stddata__2015_02_04 Samples Report
- Overview
+ Introduction
- Summary

There were 159 redactions, 3166 replicate aliquots, 23 blacklisted aliquots, and 685 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
ACC 92 92 90 0 80 0 79 0 80 46 90
BLCA 412 348 410 112 412 0 408 0 409 127 130
BRCA 1098 1070 1089 19 1081 526 1093 0 1078 410 977
CESC 307 286 295 0 307 0 304 0 307 173 194
CHOL 36 34 36 0 36 0 36 0 36 30 0
COAD 460 452 450 69 457 153 457 0 406 331 154
COADREAD 631 623 615 104 622 222 623 0 549 461 223
DLBC 58 46 48 0 48 0 28 0 47 33 0
ESCA 185 170 184 32 185 0 184 0 184 126 0
FPPP 38 38 0 0 0 0 0 0 21 0 0
GBM 613 591 577 0 420 540 160 565 0 214 290
GBMLGG 1129 1048 1090 52 936 567 676 565 512 472 576
HNSC 528 511 522 108 528 0 520 0 523 212 279
KICH 113 110 66 0 66 0 66 0 66 0 66
KIPAN 973 897 883 0 892 88 889 0 873 661 644
KIRC 537 529 528 0 535 72 533 0 516 454 417
KIRP 323 258 289 0 291 16 290 0 291 207 161
LAML 200 200 197 0 194 0 179 0 188 0 197
LGG 516 457 513 52 516 27 516 0 512 258 286
LIHC 377 360 370 0 377 0 371 0 372 0 198
LUAD 585 518 516 120 578 32 515 0 513 181 230
LUSC 504 491 501 0 503 154 501 0 478 195 178
MESO 87 72 87 0 87 0 86 0 87 0 0
OV 602 591 586 0 594 574 296 570 453 412 316
PAAD 185 170 184 0 184 0 178 0 178 106 123
PCPG 179 178 175 0 179 0 179 0 179 80 178
PRAD 499 438 492 115 498 0 497 0 494 164 425
READ 171 171 165 35 165 69 166 0 143 130 69
SARC 260 246 256 0 260 0 258 0 258 221 0
SKCM 470 438 469 118 470 0 468 0 448 204 343
STAD 443 430 442 107 443 0 274 0 442 264 221
TGCT 150 122 150 0 150 0 150 0 150 118 150
THCA 503 501 501 98 503 0 501 0 502 222 402
THYM 124 115 123 0 124 0 120 0 124 90 0
UCEC 560 532 540 106 547 54 545 0 538 200 248
UCS 57 57 56 0 57 0 57 0 56 48 57
UVM 80 71 80 0 80 0 80 0 80 12 80
Totals 11352 10693 10987 1091 10955 2217 10095 1135 10159 5268 6459
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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