Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9118302	9118302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC2A5-517	NM_003039	exon2	c.C41T	p.T14M	ACAAGCGTCAGCC	.	242	92	321	1	.	0	0	0	0	0
PTCHD2	57540	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11574461	11574461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PTCHD2-209	NM_020780	exon4	c.T1331C	p.L444P	AGGTTCTCTATGG	.	50	21	90	1	.	0	0	0	0	0
FAM131C	348487	ucsc.edu	37	1	16385007	16385007	+	Silent	SNP	C	C	T	rs28667975		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FAM131C-514	NM_182623	exon7	c.G768A	p.G256G	GTGGGTCCCACCC	.	31	9	11	0	C|1.000;|0.000	35	35	0	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19455563	19455563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	UBR4-612	NM_020765	exon61	c.A8912T	p.H2971L	ACCATGTGCAGCC	.	88	30	131	0	.	0	0	0	0	0
RNF19B	127544	bcgsc.ca	37	1	33407925	33407925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RNF19B-68	NM_153341	exon7	c.C1541T	p.A514V	AAGCTGGCCGTTT	.	111	6	157	0	.	3	3	0	0	0
PRDX1	5052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45980288	45980290	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PRDX1-514	NM_181696	exon5	c.403_405del	p.135_135del	ACCCTTATCATCA	.	107	35	169	0	.	0	0	0	0	0
PDE4B	5142	ucsc.edu;bcgsc.ca	37	1	66384376	66384376	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PDE4B-92	NM_002600	exon3	c.T139A	p.S47T	TGTTGCTCAGGAA	.	225	99	269	3	.	0	0	0	0	0
IFI44L	10964	ucsc.edu	37	1	79095482	79095482	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IFI44L-90	NM_006820	exon4	c.T605A	p.L202X	TTCTTTTGGTGGG	.	42	4	65	0	.	0	0	0	0	0
GBP4	115361	ucsc.edu	37	1	89658754	89658754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GBP4-90	NM_052941	exon5	c.G503T	p.R168M	TTTGCCCTGATTA	.	42	4	85	0	.	0	0	0	0	0
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	107691233	107691233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NTNG1-140	NM_001113228	exon2	c.C18A	p.F6L	AAGATTCCTGTCG	.	119	55	145	0	.	0	0	0	0	0
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150532560	150532560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ADAMTSL4-92	NM_019032	exon19	c.C3113T	p.P1038L	GCTCTCCACATTG	.	262	47	137	0	.	2	2	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158632609	158632609	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SPTA1-142	NM_003126	exon17	c.G2347C	p.A783P	GGGTGGCCAGTGG	.	209	44	150	0	.	0	0	0	0	0
DUSP12	11266	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161722196	161722196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DUSP12-226	NM_007240	exon4	c.C616T	p.P206S	GTTGACCCAACTA	.	319	135	261	2	.	20	13	7	0	0
PTPN7	5778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202122941	202122941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PTPN7-227	NM_002832	exon7	c.C944A	p.T315K	TCTTCTGTGGGCC	.	144	22	100	0	.	0	0	0	0	0
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210857405	210857405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KCNH1-94	NM_172362	exon11	c.A2188C	p.I730L	GCAAGATCAGGGG	.	45	10	22	0	.	0	0	0	0	0
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215821063	215821063	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	USH2A-115	NM_206933	exon67	c.C14592A	p.L4864L	GAATTGGAGTTCA	.	50	10	29	0	.	0	0	0	0	0
TRIM11	81559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228582932	228582932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TRIM11-658	NM_145214	exon6	c.A881G	p.D294G	GCGGTGTCCGGGT	.	43	9	25	0	.	30	20	10	0	0
CCDC3	83643	bcgsc.ca	37	10	12940564	12940564	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC3-91	NM_031455	exon3	c.A665T	p.K222M	ACCTTCTTCACTC	.	137	6	133	0	.	0	0	0	0	0
HSPA14	51182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	14909858	14909859	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HSPA14-291	NM_016299	exon12	c.1330_1331del	p.444_444del	GAACTCTATGAGT	.	158	60	120	0	.	0	0	0	0	0
OLAH	55301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15103749	15103749	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OLAH-68	NM_018324	exon5	c.G349C	p.E117Q	GGAAGAGAAAGCA	.	150	35	144	0	.	0	0	0	0	0
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49440201	49440201	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FRMPD2-153	NM_001018071	exon10	c.C1125T	p.A375A	GAGGTTGGCAAAG	.	138	47	124	0	.	0	0	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61835910	61835910	+	Missense_Mutation	SNP	T	T	A	rs201650334	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANK3-107	NM_020987	exon37	c.A4729T	p.M1577L	AAGACATTGTCCG	.	340	72	255	0	.	0	0	0	0	0
CYP26C1	340665	broad.mit.edu	37	10	94828150	94828150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CYP26C1-90	NM_183374	exon6	c.G1265A	p.R422H	TGTACCGCAGCCC	.	85	4	73	0	.	0	0	0	0	0
C11orf35	256329	hgsc.bcm.edu	37	11	560710	560710	+	Missense_Mutation	SNP	A	A	G	rs200922487		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C11orf35-69	NM_173573	exon1	c.T7C	p.W3R	GCAGCCACCGCAT	.	12	8	3	0	.	0	0	0	0	0
DCDC1	341019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	31349747	31349747	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DCDC1-91	NM_181807	exon3	c.A81G	p.V27V	CTGTAATACTTCC	.	50	6	59	0	.	0	0	0	0	0
WT1-AS	51352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32461206	32461206	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	WT1-AS-68	.	.	.	.	TCTCCCCCAGTTC	.	82	32	99	0	.	0	0	0	0	0
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371204	55371204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OR4C11-69	NM_001004700	exon1	c.T646C	p.Y216H	CAATATATGAAAT	.	95	35	96	0	.	0	0	0	0	0
CD248	57124	broad.mit.edu;bcgsc.ca	37	11	66084195	66084195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CD248-154	NM_020404	exon1	c.G304A	p.G102S	TGAAGCCGCGCAG	.	49	8	21	0	.	1	1	0	0	0
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73441848	73441848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RAB6A-227	NM_002869	exon2	c.A91G	p.T31A	ATCTGGTGATCAA	.	227	60	226	0	.	9	4	5	0	0
TAF1D	79101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93471576	93471576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TAF1D-90	NM_024116	exon3	c.T158G	p.V53G	GTACGAACAAATT	.	79	42	69	1	.	45	23	22	0	0
MRE11A	4361	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94201026	94201026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MRE11A-722	NM_005591	exon10	c.C1051T	p.R351C	CCAGACGTTCCCG	.	139	28	169	1	.	11	10	1	0	0
VWF	7450	broad.mit.edu;bcgsc.ca	37	12	6128740	6128740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	VWF-163	NM_000552	exon28	c.C3844G	p.L1282V	CATCCAGCAGGAA	.	221	9	241	0	.	8	8	0	0	0
C12orf57	113246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7053766	7053766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C12orf57-90	NM_138425	exon2	c.G180T	p.Q60H	CACGCAGATCCAG	.	358	93	248	0	.	193	171	22	0	0
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18491453	18491453	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PIK3C2G-1312	NM_004570	exon9	c.C1366T	p.L456L	AATGAACTAAGTC	.	139	29	192	0	.	0	0	0	0	0
SLCO1C1	53919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20864373	20864373	+	Missense_Mutation	SNP	C	C	T	rs181627657		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLCO1C1-97	NM_017435	exon5	c.C458T	p.P153L	TCTCTCCGTGTCT	.	109	36	120	1	C|0.999;T|0.000	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	430	18	220	8	G|0.998;A|0.002	749	505	244	0	0
ATF1	466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51207830	51207830	+	Silent	SNP	T	T	C	rs186674535	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ATF1-685	NM_005171	exon5	c.T366C	p.S122S	GGCAAGTCCAGGC	.	302	75	189	0	T|0.999;G|0.000	32	25	7	0	0
OR6C2	341416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55846356	55846356	+	Missense_Mutation	SNP	G	G	A	rs187562104		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OR6C2-70	NM_054105	exon1	c.G359A	p.R120H	ATGACCGCTATGT	.	103	19	85	0	G|0.999;A|0.001	0	0	0	0	0
NABP2	79035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56622965	56622965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_024068	exon7	c.G604A	p.G202S	AGTAACGGCAAAG	.	155	20	102	0	.	38	29	9	0	0
AVPR1A	552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63544072	63544072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	AVPR1A-946	NM_000706	exon1	c.G545T	p.S182I	GGCGTGCTCAGCA	.	282	59	161	0	.	0	0	0	0	0
LLPH	84298	broad.mit.edu	37	12	66517671	66517671	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LLPH-514	NM_032338	exon3	c.G339A	p.K113K	TTTCCCCTTTCTT	.	135	5	69	0	.	273	258	15	0	0
HCFC2	29915	hgsc.bcm.edu;bcgsc.ca	37	12	104459979	104459990	+	In_Frame_Del	DEL	AGATATCCCTCC	AGATATCCCTCC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	AGATATCCCTCC	AGATATCCCTCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HCFC2-92	NM_013320	exon2	c.198_209del	p.66_70del	TAGAGGAGATATC	.	134	5	98	0	.	0	0	0	0	0
FAM222A	84915	hgsc.bcm.edu	37	12	110206245	110206245	+	Missense_Mutation	SNP	G	G	A	rs201640109		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_032829	exon3	c.G511A	p.G171S	CCACCCGGCCTGC	.	30	18	0	0	.	16	8	8	0	0
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114529971	114529971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GAS6-650	NM_000820	exon12	c.A1475G	p.Y492C	TTACTGTAGTCCA	.	125	53	149	0	.	0	0	0	0	0
EFS	10278	bcgsc.ca	37	14	23834217	23834217	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EFS-153	NM_032459	exon1	c.G18A	p.S6S	ACTCACCGACGTG	.	186	70	198	4	.	0	0	0	0	0
PCK2	5106	ucsc.edu	37	14	24568382	24568382	+	Silent	SNP	C	C	T	rs200826292		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCK2-227	NM_004563	exon5	c.C789T	p.C263C	GAAGTGCTTTGCC	.	45	4	48	0	C|0.999;T|0.001	24	24	0	0	0
NPAS3	64067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	33684463	33684463	+	Silent	SNP	T	T	C	rs138614075		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NPAS3-93	NM_001164749	exon3	c.T216C	p.Y72Y	GTTCTATGAATTG	.	97	30	141	1	T|1.000;C|0.000	0	0	0	0	0
ARID4A	5926	broad.mit.edu	37	14	58831394	58831394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARID4A-231	NM_002892	exon20	c.T2587A	p.S863T	GGACAATCATCGC	.	104	3	109	0	.	3	3	0	0	0
PAPLN	89932	broad.mit.edu	37	14	73712814	73712814	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PAPLN-70	NM_173462	exon5	c.G265T	p.E89X	CGGGCCGAGCAGT	.	105	6	49	0	.	0	0	0	0	0
ABCD4	5826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74763089	74763089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ABCD4-292	NM_005050	exon5	c.G489T	p.K163N	GATGAGCTTGCTG	.	78	23	77	0	.	4	3	1	0	0
TMEM63C	57156	broad.mit.edu	37	14	77685876	77685876	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_020431	exon4	c.T186A	p.A62A	GAAAGCTGCGTGG	.	115	4	138	0	.	1	1	0	0	0
UNC13C	440279	broad.mit.edu	37	15	54586242	54586242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	UNC13C-51	NM_001080534	exon9	c.T3968A	p.M1323K	GAGAAATGGATGT	.	73	4	84	0	.	0	0	0	0	0
RORA	6095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	60797800	60797800	+	Silent	SNP	C	C	T	rs199818399		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RORA-290	NM_134260	exon7	c.G948A	p.S316S	CAGATGCGATTTA	.	99	31	109	0	.	18	12	6	0	0
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65703500	65703500	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IGDCC4-93	NM_020962	exon2	c.G279T	p.L93L	CAGCCACAGGGAA	.	195	62	157	0	.	0	0	0	0	0
ARIH1	25820	broad.mit.edu	37	15	72873082	72873082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARIH1-226	NM_005744	exon12	c.C1226A	p.A409E	CTAGGGCAGCCCT	.	90	6	93	1	.	0	0	0	0	0
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85438269	85438269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC28A1-93	NM_201651	exon6	c.C376T	p.R126C	GGCCACCGCCTGC	.	151	40	122	0	.	0	0	0	0	0
MSLN	10232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	818658	818658	+	Silent	SNP	G	G	A	rs201197109		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MSLN-91	NM_013404	exon17	c.G1818A	p.S606S	CCTCTCGGGGACG	.	63	19	43	0	G|0.999;A|0.001	0	0	0	0	0
SPNS1	83985	broad.mit.edu	37	16	28992830	28992830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SPNS1-90	NM_001142451	exon6	c.T703C	p.F235L	CTGCTGTTCCTGG	.	128	3	99	0	.	86	85	1	0	0
LONP2	83752	ucsc.edu	37	16	48295433	48295433	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LONP2-90	NM_031490	exon5	c.G822A	p.E274E	GCTAGAGAAAAAA	.	260	2	223	0	.	20	14	6	0	0
SALL1	6299	broad.mit.edu	37	16	51171231	51171231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SALL1-98	NM_002968	exon3	c.A3767C	p.Q1256P	CCGTTCTGAATGA	.	95	4	87	0	.	0	0	0	0	0
EDC4	23644	broad.mit.edu	37	16	67917881	67917881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EDC4-92	NM_014329	exon29	c.C4036A	p.H1346N	GTGATGCACCTGG	.	114	8	54	2	.	213	202	10	0	1
NTN1	9423	broad.mit.edu;bcgsc.ca	37	17	9143050	9143050	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NTN1-90	NM_004822	exon7	c.G1580C	p.R527P	CGAGCCGCATCCG	.	128	60	163	3	.	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18062646	18062646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MYO15A-97	NM_016239	exon53	c.A9214G	p.T3072A	ATGGCCACCGACA	.	83	33	101	0	.	0	0	0	0	0
LRRC37B	114659	broad.mit.edu	37	17	30348897	30348897	+	Silent	SNP	C	C	T	rs200519924		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LRRC37B-92	NM_052888	exon1	c.C732T	p.N244N	GGTGAACGCAGAT	.	105	4	118	0	C|0.999;T|0.000	1	1	0	0	0
LASP1	3927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37070576	37070576	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LASP1-522	NM_006148	exon5	c.358-2A>C	.	CCTTGCAGATAAA	.	385	90	259	0	.	0	0	0	0	0
ARL4D	379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41477602	41477602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARL4D-228	NM_001661	exon2	c.T502C	p.C168R	CAAGGCTGCAGCG	.	68	24	60	0	.	3	2	1	0	0
HEXIM2	124790	broad.mit.edu;bcgsc.ca	37	17	43247039	43247039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HEXIM2-90	NM_144608	exon4	c.G724A	p.G242S	TGCACCGGCCAGC	.	138	7	119	1	.	12	11	1	0	0
KANSL1	284058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44249233	44249233	+	Missense_Mutation	SNP	T	T	C	rs149661150		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001193466	exon2	c.A277G	p.K93E	ACTCCTTTGAGGG	.	206	54	216	1	T|1.000;C|0.000	7	6	1	0	0
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74004100	74004100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EVPL-93	NM_001988	exon22	c.C5186T	p.S1729L	GGCCCCGAGGTGG	.	119	33	81	0	.	0	0	0	0	0
ST6GALNAC1	55808	ucsc.edu;bcgsc.ca	37	17	74625598	74625598	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ST6GALNAC1-90	NM_018414	exon2	c.G327A	p.P109P	CTCCTCCGGCGGT	.	240	55	212	2	.	1	0	1	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625786	74625786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ST6GALNAC1-90	NM_018414	exon2	c.C139A	p.R47S	CTGTGCGTTGATG	.	49	8	66	0	.	0	0	0	0	0
B3GNTL1	146712	hgsc.bcm.edu	37	17	80915250	80915257	+	Frame_Shift_Del	DEL	GGCAGTCA	GGCAGTCA	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	GGCAGTCA	GGCAGTCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	B3GNTL1-92	NM_001009905	exon9	c.839_846del	p.280_282del	GCTGCCGGCAGTC	.	202	0	71	2	.	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	17	5	0	0	T|0.403;C|0.597	18	18	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	20	14	2	0	C|0.752;G|0.248	26	13	13	0	0
EVI5L	115704	broad.mit.edu	37	19	7911501	7911501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EVI5L-91	NM_001159944	exon1	c.T73C	p.S25P	CCAACCTCTGACT	.	104	4	87	0	.	6	6	0	0	0
CD320	51293	hgsc.bcm.edu	37	19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	rs2232775	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CD320-90	NM_001165895	exon1	c.A23G	p.Q8R	CCAACCTGCGCCA	.	59	23	1	0	T|0.852;C|0.148	44	29	15	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	6	6	0	0	A|0.411;G|0.589	0	0	0	0	0
PRAM1	84106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8555234	8555236	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CAT	CAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_032152	exon9	c.1961_1963del	p.654_655del	AGTCGACATCATC	.	185	35	126	0	.	0	0	0	0	0
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13246265	13246265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NACC1-90	NM_052876	exon2	c.C244G	p.L82V	CAGATCCTCAGCT	.	344	51	202	0	.	14	9	5	0	0
JAK3	3718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17954268	17954268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	JAK3-2418	NM_000215	exon4	c.A341G	p.K114R	TGGCACTTCTCCA	.	350	57	212	0	.	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	7	7	0	0	G|0.540;T|0.460	0	0	0	0	0
NUMBL	9253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41175846	41175846	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NUMBL-637	NM_004756	exon9	c.C1116T	p.A372A	AGCACTGGCAAAA	.	175	34	104	0	.	6	6	0	0	0
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43772123	43772123	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PSG9-92	NM_002784	exon2	c.G243A	p.S81S	TATATACGATATA	.	167	28	161	0	.	0	0	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	23	14	0	0	C|0.804;T|0.196	15	6	9	0	0
PNMAL2	57469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46997223	46997223	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PNMAL2-1	NM_020709	exon1	c.C1500T	p.N500N	CCCCTCGTTGGAC	.	83	11	76	0	.	7	5	2	0	0
TMEM143	55260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48866617	48866617	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TMEM143-90	NM_018273	exon2	c.C195G	p.D65E	GGCCCAGTCGCGG	.	90	19	66	0	.	7	4	3	0	0
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50865552	50865552	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NAPSA-90	NM_004851	exon2	c.C102G	p.V34V	AGGTTGGACTCGA	.	82	17	67	0	.	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	14	14	0	0	T|0.228;C|0.772	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	rs61751957		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LRRC4B-205	NM_001080457	exon3	c.T1913C	p.V638A	CTGGCCACGGCGG	.	25	6	1	0	A|0.777;G|0.223	0	0	0	0	0
ZNF616	90317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52620097	52620098	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF616-90	NM_178523	exon4	c.319_320del	p.107_107del	TTATCATTTGTTT	.	196	37	136	0	.	0	0	0	0	0
LILRA3	11026	ucsc.edu	37	19	54803750	54803750	+	Missense_Mutation	SNP	G	G	T	rs149807835	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LILRA3-91	NM_001172654	exon3	c.C74A	p.P25H	GGGAGGGGCCCTG	.	66	6	58	0	G|0.970;T|0.030	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	11	11	0	0	A|0.270;G|0.730	0	0	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	207	70	110	0	.	2	2	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	176	50	96	1	.	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	15	15	0	0	A|0.003;G|0.997	0	0	0	0	0
RAD51AP2	729475	broad.mit.edu;bcgsc.ca	37	2	17699028	17699028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RAD51AP2-23	NM_001099218	exon1	c.C655A	p.P219T	TTGATGGCACAAC	.	79	5	66	0	.	0	0	0	0	0
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24522788	24522788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ITSN2-539	NM_147152	exon12	c.A1334G	p.E445G	CGTCTTTCTATGT	.	75	19	55	0	.	0	0	0	0	0
OTOF	9381	hgsc.bcm.edu;bcgsc.ca	37	2	26684681	26684683	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OTOF-135	NM_194248	exon43	c.5414_5416del	p.1805_1806del	TGACGATCTTCTC	.	341	75	224	0	.	0	0	0	0	0
OTOF	9381	broad.mit.edu	37	2	26696027	26696027	+	Missense_Mutation	SNP	G	G	C	rs199904558		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OTOF-135	NM_194248	exon29	c.C3706G	p.R1236G	CCGAGCGGTCTGG	.	137	5	92	1	G|0.999;C|0.001	0	0	0	0	0
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36739479	36739479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CRIM1-118	NM_016441	exon10	c.G1722T	p.K574N	CAGTAAGATCTGC	.	290	82	205	0	.	0	0	0	0	0
CCDC142	84865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74701812	74701812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC142-68	NM_032779	exon9	c.G2093C	p.S698T	AGTGTGCTTTGCA	.	117	19	89	0	.	8	7	1	0	0
SLC35F5	80255	broad.mit.edu	37	2	114512866	114512869	+	Frame_Shift_Del	DEL	ACAC	ACAC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC35F5-90	NM_025181	exon3	c.146_149del	p.49_50del	ACAAATACACACA	.	78	7	65	0	.	0	0	0	0	0
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118575133	118575133	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DDX18-290	NM_006773	exon2	c.G199T	p.E67X	TTATCAGAAACTC	.	155	31	135	0	.	4	4	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125285031	125285031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CNTNAP5-524	NM_130773	exon10	c.C1644A	p.D548E	CAAAGACAGGTAA	.	97	23	108	0	.	0	0	0	0	0
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	144245049	144245049	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARHGAP15-653	NM_018460	exon9	c.A811C	p.K271Q	CAAGAAAAAGGAC	.	48	14	35	0	.	1	1	0	0	0
FMNL2	114793	hgsc.bcm.edu;bcgsc.ca	37	2	153476031	153476031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FMNL2-516	NM_052905	exon15	c.G1636A	p.G546S	CAAAATGGTCCAG	.	52	10	59	0	.	0	0	0	0	0
KCNH7	90134	broad.mit.edu;bcgsc.ca	37	2	163241222	163241222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KCNH7-95	NM_033272	exon13	c.G2938C	p.D980H	TTTTATCTATGTG	.	201	8	132	0	.	0	0	0	0	0
CCDC141	285025	broad.mit.edu	37	2	179721022	179721022	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC141-78	NM_173648	exon18	c.C2827T	p.Q943X	GAATTTGATATTT	.	101	6	77	0	.	0	0	0	0	0
CASP8	841	broad.mit.edu	37	2	202137439	202137440	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CASP8-660	NM_001080125	exon4	c.667_668del	p.223_223del	AGAGTCTGTGCCC	.	107	11	68	0	.	0	0	0	0	0
CYP20A1	57404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204143326	204143326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CYP20A1-90	NM_177538	exon7	c.A710G	p.N237S	TAAGGAACATCAT	.	342	62	313	0	.	19	13	6	0	0
VWC2L	402117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215279234	215279234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001080500	exon2	c.G317T	p.C106F	GATGCTGTCCTGA	.	112	33	80	0	.	0	0	0	0	0
ZNF142	7701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219508012	219508012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF142-137	NM_001105537	exon8	c.C3227T	p.S1076F	GGAGCAGAGTCCC	.	222	46	154	1	.	1	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219896232	219896232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC108-94	NM_194302	exon7	c.T794C	p.F265S	CAGAAAAAGGCCT	.	588	12	403	1	.	0	0	0	0	0
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230656613	230656613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TRIP12-572	NM_004238	exon28	c.G4159A	p.A1387T	TACCAGCTCTGCC	.	255	126	161	0	.	14	9	5	0	0
NMUR1	10316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	232393591	232393591	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NMUR1-523	NM_006056	exon2	c.G141T	p.L47L	GAGTCTCAGTGCC	.	209	22	162	1	.	0	0	0	0	0
DIS3L2	129563	broad.mit.edu	37	2	233194545	233194545	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DIS3L2-136	NM_152383	exon15	c.T1762A	p.L588M	ATGCTCTTGGCCA	.	74	3	57	0	.	28	28	0	0	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	227	12	165	0	.	0	0	0	0	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3214626	3214626	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC4A11-91	NM_001174090	exon6	c.C675T	p.I225I	CCCTTGGATGGTA	.	100	36	92	0	.	0	0	0	0	0
PCSK2	5126	broad.mit.edu	37	20	17341187	17341187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCSK2-157	NM_002594	exon4	c.G407T	p.G136V	ATACTGGGCAAGC	.	201	7	176	0	.	0	0	0	0	0
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43057001	43057001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HNF4A-227	NM_178849	exon9	c.C1156A	p.H386N	CATGCCCACCACC	.	119	48	89	0	.	1	1	0	0	0
KCNS1	3787	bcgsc.ca	37	20	43727108	43727108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KCNS1-90	NM_002251	exon4	c.T305C	p.F102S	AAGTAGAATTCGC	.	146	6	91	0	.	0	0	0	0	0
SLMO2	51012	broad.mit.edu	37	20	57613555	57613555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLMO2-45	NM_001256403	exon2	c.G167A	p.S56N	TCTGTGCTGAGAA	.	74	3	76	0	.	23	23	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	70	13	25	0	A|0.979;G|0.021	211	168	43	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OGFR-68	NM_007346	exon7	c.G1666A	p.E556K	CCAGCCGAGAGCC	.	47	12	3	0	.	146	146	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OGFR-68	NM_007346	exon7	c.G1670C	p.S557T	CCGAGAGCCCATC	.	42	10	3	0	.	140	140	0	0	0
DSCAM	1826	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41539177	41539177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSCAM-101	NM_001271534	exon16	c.A2986G	p.I996V	ATGATATAGGCTC	.	116	30	131	1	.	0	0	0	0	0
SLC25A18	83733	broad.mit.edu	37	22	18070006	18070006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC25A18-90	NM_031481	exon8	c.G514C	p.E172Q	GCCTGGGAGCTGC	.	54	4	67	0	.	0	0	0	0	0
PRRT3	285368	bcgsc.ca	37	3	9990800	9990800	+	Missense_Mutation	SNP	G	G	C	rs59465469	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PRRT3-90	NM_207351	exon2	c.C1000G	p.R334G	ACGGCCGATCAGG	.	7	6	13	0	G|0.674;C|0.326	4	1	3	0	0
FANCD2	2177	bcgsc.ca	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FANCD2-229	NM_001018115	exon26	c.A2391G	p.V797V	GATTGTAAATGCC	.	96	6	89	0	A|0.909;G|0.091	0	0	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FANCD2-229	NM_001018115	exon26	c.G2406T	p.Q802H	CTGCCAGGAAACA	.	128	6	108	0	G|0.990;T|0.010	3	3	0	0	0
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37396592	37396592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GOLGA4-93	NM_001172713	exon22	c.A6622C	p.T2208P	TTGTAGACCATGG	.	75	13	58	0	.	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CTNNB1-24361	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	218	74	205	1	G|1.000;T|0.000	70	51	19	0	0
COL7A1	1294	broad.mit.edu	37	3	48621170	48621170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	COL7A1-160	NM_000094	exon39	c.C4322T	p.P1441L	TTTCCAGGGGGGC	.	64	4	55	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	7	7	0	0	G|0.252;C|0.748	0	0	0	0	0
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	113697118	113697120	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIAA1407-92	NM_020817	exon16	c.2519_2521del	p.840_841del	TGAAAATCTTCTT	.	99	21	74	0	.	0	0	0	0	0
OSBPL11	114885	broad.mit.edu;bcgsc.ca	37	3	125257453	125257453	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OSBPL11-135	NM_022776	exon11	c.C1866T	p.N622N	GGTGATGTTGTGC	.	140	9	131	0	.	4	3	1	0	0
PLXND1	23129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129290586	129290586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLXND1-90	NM_015103	exon16	c.A3179G	p.N1060S	GTGAGGTTGCCGT	.	422	84	279	2	.	24	21	3	0	0
TMCC1	23023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129370603	129370603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TMCC1-91	NM_001017395	exon6	c.G1683C	p.K561N	CTCCATCTTGGAG	.	82	17	78	1	.	23	17	5	0	1
RYK	6259	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133896850	133896850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RYK-1379	.	.	.	.	AATTCATGTAAGG	.	167	86	142	0	.	23	17	6	0	0
COPB2	9276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139077931	139077931	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	COPB2-92	NM_004766	exon19	c.T2393A	p.F798Y	CCAGGGAACAGGT	.	105	21	85	0	.	230	177	52	0	1
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141162487	141162487	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZBTB38-25	NM_001080412	exon8	c.A1257T	p.G419G	AAATGGAGGTTCA	.	171	48	138	0	.	0	0	0	0	0
CCNL1	57018	hgsc.bcm.edu;bcgsc.ca	37	3	156868131	156868134	+	Frame_Shift_Del	DEL	AACA	AACA	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	AACA	AACA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCNL1-659	NM_020307	exon6	c.711_714del	p.237_238del	AAATCGAACAAAC	.	204	39	174	1	.	0	0	0	0	0
CCDC39	339829	ucsc.edu	37	3	180337128	180337128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC39-72	NM_181426	exon16	c.A2184T	p.Q728H	TTCTAGTTGAATT	.	34	4	33	0	.	0	0	0	0	0
MCCC1	56922	mdanderson.org	37	3	182733294	182733294	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MCCC1-92	NM_020166	exon19	c.C2110T	p.Q704X	TGGCCTGAGCACC	.	258	45	150	4	.	32	29	3	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959508	183959508	+	Silent	SNP	A	A	C	rs28606531	byfrequency;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_138345	exon19	c.A3411C	p.P1137P	GGGGCCAGGCCAG	.	27	12	2	0	A|0.927;C|0.073	4	2	2	0	0
IGF2BP2	10644	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185407396	185407396	+	Missense_Mutation	SNP	C	C	G	rs148304949	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IGF2BP2-226	NM_001007225	exon6	c.G424C	p.G142R	GATGCCCGCTTAG	.	319	41	221	2	C|1.000;T|0.000	17	14	3	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	63	11	12	0	.	0	0	0	0	0
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36130245	36130245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARAP2-93	NM_015230	exon21	c.G3550C	p.D1184H	TCACATCTTCAAG	.	209	72	222	0	.	0	0	0	0	0
KIAA1211	57482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57180955	57180955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIAA1211-70	NM_020722	exon8	c.G1287T	p.R429S	GGAGAGGCTCGAA	.	220	52	221	1	.	0	0	0	0	0
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62936396	62936396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LPHN3-508	NM_015236	exon23	c.G4180A	p.V1394I	GAGAGTGTTACCA	.	72	31	114	0	.	8	6	2	0	0
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71510144	71510144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ENAM-93	NM_031889	exon9	c.G3001T	p.V1001F	GAACAAGTTTTTG	.	320	78	296	0	.	0	0	0	0	0
WDFY3	23001	broad.mit.edu	37	4	85623617	85623617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	WDFY3-93	NM_014991	exon56	c.C8485T	p.R2829C	CCTCGCGCACACT	.	135	5	126	1	.	3	3	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSPP-90	NM_014208	exon5	c.C3456T	p.D1152D	CAGCGACAGCAGT	.	591	40	610	3	.	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537435	88537435	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSPP-90	NM_014208	exon5	c.C3621T	p.S1207S	TGATAGCAGTGAC	.	621	86	643	4	.	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537441	88537441	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSPP-90	NM_014208	exon5	c.C3627T	p.D1209D	CAGTGACAGCAGT	.	624	139	651	4	.	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537456	88537456	+	Silent	SNP	C	C	T	rs111240022	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSPP-90	NM_014208	exon5	c.C3642T	p.S1214S	CAGCAGCGACAGC	.	655	311	639	4	.	0	0	0	0	0
NDST4	64579	ucsc.edu	37	4	115769495	115769495	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NDST4-94	NM_022569	exon10	c.1817-1G>T	.	TTGTTCCTGTTAC	.	30	4	24	0	.	0	0	0	0	0
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125592202	125592202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANKRD50-90	NM_020337	exon4	c.T2230C	p.C744R	TATCACAATGATC	.	98	21	95	0	.	0	0	0	0	0
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11082866	11082866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CTNND2-293	NM_001332	exon16	c.C2730G	p.C910W	CACCGCGCACACC	.	135	38	116	1	.	0	0	0	0	0
DROSHA	29102	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31526222	31526222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DROSHA-227	NM_013235	exon4	c.G818T	p.R273I	GGTGTTCTCCCTC	.	205	62	136	1	.	0	0	0	0	0
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43161463	43161463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF131-90	NM_003432	exon5	c.G484C	p.E162Q	TCTGCAGAATCAG	.	243	67	214	0	.	3	3	0	0	0
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50680462	50680462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ISL1-515	NM_002202	exon2	c.A116C	p.H39P	AATGGCATGCGGC	.	259	43	233	0	.	43	27	16	0	0
ANKRD34B	340120	ucsc.edu	37	5	79854554	79854554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANKRD34B-69	NM_001004441	exon5	c.A1285T	p.R429W	CTCGCCTTTCTAA	.	29	4	25	0	.	0	0	0	0	0
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215777	140215777	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCDHA7-94	NM_031852	exon1	c.C1809T	p.Y603Y	AGGCTACAACGCG	.	561	140	294	0	.	0	0	0	0	0
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140389355	140389355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCDHAC2-26	NM_018899	exon4	c.A2857G	p.I953V	CCTGCAATCATCT	.	156	42	136	0	.	0	0	0	0	0
ADRA1B	147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159344848	159344848	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ADRA1B-522	NM_000679	exon1	c.C936T	p.I312I	CTTCATCGCTCTA	.	139	31	92	0	.	0	0	0	0	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169097591	169097591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DOCK2-97	NM_004946	exon4	c.G214C	p.E72Q	ACAGTTGAGAAAA	.	97	19	68	0	.	0	0	0	0	0
FLT4	2324	broad.mit.edu	37	5	180048764	180048764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FLT4-1490	NM_182925	exon13	c.G1798A	p.D600N	GCGCATCGTGCAG	.	425	8	242	0	.	0	0	0	0	0
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4037635	4037635	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PRPF4B-1308	NM_003913	exon3	c.C1243T	p.R415X	AGAACACGACCTC	.	74	26	82	0	.	0	0	0	0	0
HIST1H3E	8353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26225400	26225400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HIST1H3E-68	NM_003532	exon1	c.G18C	p.Q6H	TAAGCAGACGGCT	.	310	88	300	0	.	0	0	0	0	0
EHMT2	10919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31854777	31854777	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EHMT2-91	NM_006709	exon16	c.C2113T	p.L705L	CCTGCAGCAGCAC	.	61	15	52	1	.	0	0	0	0	0
DAAM2	23500	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39867948	39867948	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DAAM2-228	NM_001201427	exon23	c.C2775A	p.S925S	CTTCTCCGAGCTG	.	108	33	92	1	.	12	6	6	0	0
CUL7	9820	broad.mit.edu	37	6	43020160	43020160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CUL7-229	NM_001168370	exon2	c.C523T	p.R175W	GCTGCCGAAGGGC	.	110	4	107	1	.	5	5	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51774212	51774212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PKHD1-603	NM_170724	exon40	c.G6551T	p.G2184V	CTGGCTCCCATAT	.	177	52	165	0	.	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56336987	56336987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DST-523	NM_015548	exon75	c.C14159T	p.S4720F	GACCCAGAGGGAT	.	182	56	178	0	.	20	16	4	0	0
SYNCRIP	10492	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	86324650	86324650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SYNCRIP-92	NM_006372	exon11	c.A1696G	p.K566E	CAGCTTTGCGCTT	.	80	22	122	1	.	53	30	23	0	0
GABRR2	2570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	89978901	89978901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GABRR2-68	NM_002043	exon4	c.C341G	p.A114G	GAGAAAGCTAGCC	.	154	41	161	0	.	1	1	0	0	0
RNF217	154214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	125404012	125404012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RNF217-68	NM_152553	exon9	c.T797G	p.F266C	CTAGGTTTATTTG	.	71	18	59	0	.	0	0	0	0	0
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	136582461	136582461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	BCLAF1-228	NM_014739	exon12	c.A2699T	p.D900V	TCTTCATCTTCAA	.	125	15	90	0	.	40	40	0	0	0
MTHFD1L	25902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151281517	151281517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MTHFD1L-292	NM_001242767	exon18	c.A1913T	p.D638V	CCAGTGACAAAAG	.	226	66	194	0	.	4	3	1	0	0
SCAF8	22828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	155126521	155126522	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SCAF8-91	NM_014892	exon9	c.882_883del	p.294_295del	AGAATCTGTGAAC	.	91	25	90	0	.	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	62	8	56	0	.	11	11	0	0	0
TBP	6908	mdanderson.org	37	6	170871043	170871043	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TBP-91	NM_003194	exon3	c.G219A	p.Q73Q	GCAACAGCAACAG	.	64	15	47	1	.	73	61	12	0	0
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11485690	11485690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	THSD7A-71	NM_015204	exon13	c.A3062G	p.H1021R	TTACCATGGCTGT	.	213	42	159	0	.	0	0	0	0	0
BZW2	28969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16734601	16734601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	BZW2-92	NM_014038	exon8	c.G794A	p.R265H	AGGAGCGTCTTTC	.	63	15	51	0	.	99	75	24	0	0
SP8	221833	hgsc.bcm.edu;mdanderson.org	37	7	20824953	20824953	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SP8-91	NM_182700	exon2	c.C483G	p.G161G	GCCGCCGCCCCCG	.	29	16	11	0	.	0	0	0	0	0
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21469550	21469550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SP4-95	NM_003112	exon3	c.C767T	p.T256I	TAACAACCCTACC	.	261	60	193	0	.	0	0	0	0	0
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23163401	23163401	+	Silent	SNP	G	G	A	rs150640353		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KLHL7-90	NM_001172428	exon2	c.G126A	p.T42T	GAAAACGTTGTGT	.	98	18	103	0	G|1.000;A|0.000	1	0	1	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47897371	47897371	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PKD1L1-145	NM_138295	exon28	c.T4422C	p.H1474H	GTTGTAATGAAGA	.	127	26	81	0	.	0	0	0	0	0
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48327569	48327569	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ABCA13-521	NM_152701	exon20	c.G8849A	p.W2950X	CTTCCTGGACCAA	.	87	25	63	1	.	0	0	0	0	0
GRB10	2887	bcgsc.ca	37	7	50682537	50682537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GRB10-1272	NM_005311	exon9	c.G1025A	p.S342N	ATGTTGCTGTCCT	.	126	6	86	0	.	0	0	0	0	0
CROT	54677	ucsc.edu	37	7	86988623	86988623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CROT-280	NM_001143935	exon5	c.A301G	p.R101G	CTTGAAAGAGCAA	.	40	4	63	0	.	8	8	0	0	0
AKAP9	10142	broad.mit.edu	37	7	91667778	91667778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	AKAP9-755	NM_005751	exon17	c.T4384C	p.S1462P	GAACTGTCTAGAA	.	95	3	130	0	.	1	1	0	0	0
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121769438	121769438	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	AASS-92	NM_005763	exon3	c.T364C	p.L122L	CCAACAAGCCCAT	.	24	8	34	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	33	7	2	0	.	0	0	0	0	0
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	rs79377053		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001100592	exon1	c.G88A	p.A30T	GGACCCGCGCACC	.	23	10	2	0	G|0.870;A|0.130	6	3	3	0	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2857496	2857496	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CSMD1-86	NM_033225	exon53	c.A8187G	p.Q2729Q	AGGCGTTTGTCCA	.	129	21	137	0	.	0	0	0	0	0
ANGPT2	285	broad.mit.edu	37	8	6378801	6378801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANGPT2-91	NM_001118887	exon4	c.A697G	p.K233E	CTATTTTTTTTTC	.	129	4	107	0	.	3	3	0	0	0
GOT1L1	137362	broad.mit.edu	37	8	37794838	37794838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GOT1L1-23	NM_152413	exon4	c.A476G	p.K159R	AGCTTCTTGGGGT	.	123	4	73	0	.	0	0	0	0	0
LSM1	27257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38021296	38021298	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LSM1-90	NM_014462	exon4	c.292_294del	p.98_98del	CCTTTGTTCTTCT	.	112	26	74	0	.	0	0	0	0	0
SLCO5A1	81796	ucsc.edu	37	8	70617290	70617290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLCO5A1-94	NM_001146008	exon5	c.G1598A	p.G533D	TTTATGCCCCCTA	.	24	4	20	0	.	0	0	0	0	0
ANGPT1	284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	108334173	108334173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANGPT1-521	NM_001199859	exon4	c.G759A	p.E253E	CATCAGCTCCAGT	.	209	39	182	2	.	1	1	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113323220	113323220	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CSMD3-1132	NM_198123	exon50	c.C7872A	p.V2624V	GGCAGGGACTGGC	.	127	30	88	0	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	18	18	2	2	.	0	0	0	0	0
SQLE	6713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126019726	126019726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SQLE-523	NM_003129	exon4	c.C819G	p.I273M	AGATATCAAGGTG	.	120	28	87	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	10	0	0	A|0.118;G|0.882	3	0	3	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	8	8	0	0	C|0.740;T|0.260	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	19	18	0	0	A|0.738;G|0.262	4	0	4	0	0
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144998369	144998369	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLEC-141	NM_201380	exon31	c.A6139T	p.K2047X	GCCCCTTCTGCCG	.	110	40	29	0	.	4	4	0	0	0
MROH1	727957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145247210	145247210	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001099281	exon9	c.856-2A>C	.	CGGAGCAGAGCCT	.	46	14	48	0	.	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	14	14	0	0	G|0.992;C|0.006	2	0	2	0	0
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34627865	34627865	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARID3C-91	NM_001017363	exon1	c.G147T	p.G49G	CTCAGCCCCAACA	.	92	51	71	0	.	0	0	0	0	0
C9orf131	138724	broad.mit.edu	37	9	35045280	35045280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C9orf131-90	NM_203299	exon2	c.A2654G	p.Q885R	GGTCTCAGAGAGG	.	103	4	88	0	.	0	0	0	0	0
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74347358	74347358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TMEM2-92	NM_013390	exon7	c.A1472G	p.N491S	ACAATATTCCGGG	.	100	28	88	0	.	8	8	0	0	0
C9orf57	138240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	74674243	74674243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001128618	exon2	c.G71A	p.R24K	ATCCTTCTCATTC	.	91	18	82	0	.	0	0	0	0	0
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86518378	86518378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIF27-523	NM_017576	exon4	c.A1055C	p.E352A	TCTGACTCGGGGC	.	32	6	35	0	.	0	0	0	0	0
PTPDC1	138639	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96859984	96859984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PTPDC1-227	NM_001253829	exon6	c.C1136T	p.S379F	CAATGTCTGAGAT	.	132	38	124	0	.	0	0	0	0	0
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117169063	117169063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DFNB31-95	NM_001173425	exon9	c.G1808C	p.G603A	TCTCTCCCCAGCT	.	151	30	105	0	.	10	8	2	0	0
TNC	3371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117792645	117792645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TNC-517	NM_002160	exon24	c.C5960T	p.A1987V	AGCATTGCTTGGG	.	169	46	113	0	.	1	1	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	8	8	0	0	A|0.235;G|0.765	2	0	2	0	0
GLE1	2733	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131271255	131271255	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GLE1-22	NM_001499	exon2	c.C200G	p.S67C	CTCTGTCTGAGAC	.	331	58	215	1	.	9	8	0	1	0
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131271329	131271329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GLE1-22	NM_001499	exon2	c.A274G	p.S92G	GACGCAAGCTCTG	.	335	53	202	0	.	7	7	0	0	0
SAT1	6303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	23803871	23803873	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SAT1-554	NM_002970	exon6	c.414_416del	p.138_139del	CATCAACTTCTAT	.	220	55	254	0	.	0	0	0	0	0
PCYT1B	9468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24593415	24593415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCYT1B-130	NM_004845	exon7	c.G729C	p.Q243H	TTGGTTCTGGAAA	.	97	22	103	0	.	0	0	0	0	0
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	26212978	26212978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MAGEB6-133	NM_173523	exon2	c.G1015C	p.D339H	GTGCAAGATAAGT	.	456	102	367	0	.	0	0	0	0	0
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41587121	41587121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GPR82-110	NM_080817	exon3	c.G842T	p.C281F	ATAACTGTCAGCA	.	164	31	164	0	.	0	0	0	0	0
DGKK	139189	broad.mit.edu	37	X	50213274	50213274	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DGKK-227	.	.	.	.	GGCTCTGGGACCG	.	15	4	19	0	.	0	0	0	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53410124	53410124	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SMC1A-232	NM_006306	exon20	c.G3024A	p.Q1008Q	CAGCTTCTGCTGC	.	113	33	95	0	.	7	6	1	0	0
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53591626	53591626	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HUWE1-280	NM_031407	exon51	c.T6938G	p.V2313G	TCTGCCACCTCTG	.	128	21	132	2	.	0	0	0	0	0
SATL1	340562	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84362926	84362926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SATL1-175	NM_001012980	exon1	c.G1049T	p.G350V	GGTGGACCTGGTT	.	363	84	312	1	.	0	0	0	0	0
DACH2	117154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85950071	85950071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DACH2-136	NM_053281	exon5	c.G820T	p.A274S	CCATTTGCTGCAC	.	328	79	341	0	.	0	0	0	0	0
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	107979446	107979446	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IRS4-623	NM_003604	exon1	c.C129A	p.L43L	CCCAATGAGTGCG	.	111	23	115	0	.	0	0	0	0	0
PAQR4	124222	broad.mit.edu	37	16	3019781	3019782	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PAQR4-68	NM_152341	exon1	c.106_107insC	p.S36fs	AGCGGCTCGGGCT	.	204	7	65	0	.	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	TGCTGCCAGCCTT	.	136	0	134	0	.	0	0	0	0	0
FLJ45079	0	hgsc.bcm.edu;bcgsc.ca	37	17	75879202	75879203	+	RNA	INS	-	-	CCCA	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	.	.	.	.	GAGAGACCCCACA	.	62	13	57	0	.	0	0	0	0	0
ME2	4200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	48434497	48434498	+	Frame_Shift_Ins	INS	-	-	AGAG	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ME2-90	NM_001168335	exon3	c.173_174insAGAG	p.I58fs	CCAAAATAGAGAC	.	118	25	96	0	.	0	0	0	0	0
DCAF15	90379	broad.mit.edu	37	19	14071333	14071334	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DCAF15-90	NM_138353	exon12	c.1688_1689insG	p.L563fs	AGTGGCTGGTGCC	.	542	7	222	0	.	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	241715297	241715298	+	Frame_Shift_Ins	INS	-	-	CGGAATCT	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIF1A-91	NM_001244008	exon11	c.929_930insAGATTCCG	p.V310fs	GTCAACACGGAAT	.	105	8	90	0	.	0	0	0	0	0
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	183035998	183035999	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MCF2L2-293	NM_015078	exon7	c.611_612insG	p.E204fs	AAGTTTTCGATGG	.	199	36	142	0	.	0	0	0	0	0
