Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf170	84808	bcgsc.ca	37	1	915350	915350	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1orf170-68	.	.	.	.	TGTCAGGTTGCGG	.	279	12	559	3	.	0	0	0	0	0
TNFRSF25	8718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6525618	6525618	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF25-714	NM_148966	exon2	c.G42A	p.A14A	GAGGAGCGCCTGG	.	174	141	138	0	.	2	1	1	0	0
KLHL21	9903	broad.mit.edu;bcgsc.ca	37	1	6659127	6659127	+	Silent	SNP	G	G	A	rs141078522		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KLHL21-514	NM_014851	exon2	c.C1407T	p.N469N	GAGTCCGTTTAGA	.	187	6	225	0	A|0.000;C|0.000;G|1.000	6	6	0	0	0
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	5	5	0	0	T|0.001;C|0.999	27	0	27	0	0
PRAMEF19	645414	broad.mit.edu	37	1	13474795	13474798	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001099790	exon3	c.1331_1334del	p.444_445del	GGCTCCCTTACTT	.	470	250	863	2	.	0	0	0	0	0
MFAP2	4237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17302155	17302155	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MFAP2-514	NM_017459	exon7	c.C357T	p.N119N	GACCTCGTTGAGA	.	96	73	183	0	.	1	1	0	0	0
IGSF21	84966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	18691904	18691904	+	Missense_Mutation	SNP	C	C	T	rs144142024	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IGSF21-156	NM_032880	exon6	c.C728T	p.T243M	CCTACACGGAGCG	.	154	125	274	1	C|1.000;T|0.000	3	3	0	0	0
EMC1	23065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19545802	19545802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_015047	exon23	c.C2977T	p.R993X	TTTATCGCCAGGC	.	70	41	105	0	.	33	15	18	0	0
EPHB2	2048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23222940	23222940	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB2-1381	NM_004442	exon9	c.G1737A	p.T579T	GTACACGGACAAG	.	78	62	143	0	.	12	0	12	0	0
FUCA1	2517	hgsc.bcm.edu	37	1	24194748	24194748	+	Missense_Mutation	SNP	G	G	C	rs2070956	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FUCA1-153	NM_000147	exon1	c.C29G	p.P10R	CCCGCCGGCCGCG	.	11	8	0	0	G|0.177;C|0.823	1	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24407850	24407853	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYOM3-93	NM_152372	exon19	c.2374_2377del	p.792_793del	TGCACTCAAACAG	.	322	11	504	0	.	0	0	0	0	0
SEPN1	57190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26139207	26139207	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEPN1-92	.	.	.	.	GGCCTTCGACCGA	.	62	50	90	0	.	12	1	11	0	0
CATSPER4	378807	broad.mit.edu	37	1	26527381	26527381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CATSPER4-91	NM_198137	exon8	c.C1048T	p.R350C	GTCGCCCGCTCGG	.	147	5	210	1	.	0	0	0	0	0
C1orf172	126695	bcgsc.ca	37	1	27277925	27277925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1orf172-154	NM_152365	exon2	c.C947T	p.S316L	CCCTCCGAGGTCT	.	199	7	265	0	.	0	0	0	0	0
RBBP4	5928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33134949	33134949	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RBBP4-227	NM_005610	exon7	c.A879G	p.S293S	AGGATCAGCTGAC	.	100	87	143	2	.	0	0	0	0	0
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	35365799	35365799	+	Missense_Mutation	SNP	C	C	T	rs140339373		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLGAP3-71	NM_001080418	exon2	c.G1183A	p.G395S	AGCTGCCGCTCCG	.	95	7	125	0	C|0.999;T|0.000	4	3	1	0	0
KIAA0754	643314	broad.mit.edu	37	1	39879079	39879079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_015038	exon1	c.3142delA	p.T1048fs	GTGCCCACCCCAG	.	22	9	16	0	.	0	0	0	0	0
BMP8B	656	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	40230376	40230376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP8B-91	NM_001720	exon4	c.C787T	p.R263W	CTGCCCGAGGGGT	.	996	157	1460	0	.	0	0	0	0	0
FOXJ3	22887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	42657281	42657281	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXJ3-228	NM_001198851	exon11	c.C1044G	p.S348R	GGACAGGCTGCTT	.	169	144	246	0	.	6	0	6	0	0
LRRC41	10489	broad.mit.edu;bcgsc.ca	37	1	46751559	46751559	+	Missense_Mutation	SNP	G	G	A	rs145805978		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC41-156	NM_006369	exon4	c.C970T	p.R324C	TCCGGCGTGTTAC	.	48	5	84	0	G|1.000;A|0.000	17	16	1	0	0
C1orf87	127795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	60456488	60456488	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1orf87-154	NM_152377	exon12	c.C1498T	p.R500X	TGGCTCGTTCCTT	.	64	35	125	1	.	0	0	0	0	0
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60463390	60463390	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1orf87-154	NM_152377	exon11	c.G1371C	p.Q457H	GAAGGGCTGGGAG	.	85	73	125	0	.	0	0	0	0	0
FOXD3	27022	hgsc.bcm.edu;broad.mit.edu	37	1	63789205	63789207	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXD3-226	NM_012183	exon1	c.476_478del	p.159_160del	GCCCGCAGAAGAA	.	209	20	301	0	.	0	0	0	0	0
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67155933	67155933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGIP1-93	NM_032291	exon17	c.C1504T	p.R502W	TTAGCGCGGGCTG	.	73	61	85	0	.	0	0	0	0	0
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	67195022	67195022	+	Silent	SNP	G	G	A	rs150154953	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGIP1-93	NM_032291	exon20	c.G1818A	p.P606P	CAACCCGTCCCCA	.	146	107	180	0	G|0.999;A|0.001	1	1	0	0	0
SEP15	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87369102	87369102	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEP15-68	.	.	.	.	TGCCTCCGATGAA	.	87	75	97	0	.	53	4	49	0	0
LOC339524	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87599339	87599339	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	.	.	.	.	CTATATGTGGCAG	.	144	124	205	1	.	1	0	1	0	0
LPPR5	0	broad.mit.edu	37	1	99470095	99470097	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001010861	exon1	c.131_133del	p.44_45del	CGTGGCAGAAGAA	.	234	8	290	0	.	0	0	0	0	0
KCNC4	3749	bcgsc.ca	37	1	110766454	110766454	+	Missense_Mutation	SNP	G	G	A	rs59123361	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNC4-154	NM_001039574	exon2	c.G1547A	p.R516Q	CCCCCCGGGACAG	.	93	4	200	0	G|0.919;A|0.081	4	4	0	0	0
OLFML3	56944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114524270	114524270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OLFML3-68	NM_020190	exon3	c.G1100A	p.R367H	TTCCCCGCAGATA	.	85	11	120	0	.	0	0	0	0	0
TSPAN2	10100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115615562	115615562	+	Missense_Mutation	SNP	A	A	G	rs199774469		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSPAN2-226	NM_005725	exon2	c.T136C	p.S46P	CTGATGATAACTC	.	97	75	127	2	A|0.999;G|0.001	0	0	0	0	0
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAMTSL4-92	NM_019032	exon14	c.2263delG	p.G755fs	GAATTTGGGGGGG	.	52	14	40	0	.	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	9	9	0	0	T|0.073;G|0.921	1	0	1	0	0
RPTN	126638	bcgsc.ca	37	1	152128212	152128212	+	Missense_Mutation	SNP	C	C	G	rs143744326	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RPTN-68	NM_001122965	exon3	c.G1363C	p.D455H	GTCTGTCTGTCTG	.	187	6	273	0	C|0.978;G|0.022	0	0	0	0	0
LCE2B	26239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152659333	152659333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LCE2B-92	NM_014357	exon2	c.A14G	p.Q5R	GCCAGCAAAACCA	.	80	69	86	0	.	0	0	0	0	0
HCN3	57657	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155257602	155257602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HCN3-154	NM_020897	exon8	c.G1673A	p.R558H	GGAAGCGCTCCGA	.	254	39	456	1	.	8	8	0	0	0
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155823172	155823172	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GON4L-93	NM_001037533	exon2	c.400delA	p.M134X	GTGTCATTTTTTT	.	110	33	131	0	.	0	0	0	0	0
MEF2D	4209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156437983	156437983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MEF2D-659	NM_005920	exon11	c.G1356A	p.A452A	GGGAGGCGCAGGG	.	73	63	40	0	.	16	0	16	0	0
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156640677	156640677	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NES-520	NM_006617	exon4	c.G3303A	p.P1101P	CTGCCCCGGGCCT	.	52	47	48	0	.	2	0	2	0	0
HDGF	3068	bcgsc.ca	37	1	156713558	156713558	+	Missense_Mutation	SNP	G	G	A	rs4399146	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HDGF-226	NM_001126050	exon5	c.C650T	p.P217L	TCAGAGGGGGTGC	.	36	4	52	0	G|0.789;A|0.211	63	63	0	0	0
CD5L	922	bcgsc.ca;mdanderson.org	37	1	157805632	157805632	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CD5L-91	NM_005894	exon3	c.G369A	p.S123S	CTCACACGATGCC	.	42	31	57	2	.	0	0	0	0	0
NHLH1	4807	hgsc.bcm.edu	37	1	160340658	160340658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NHLH1-69	NM_005598	exon2	c.G137A	p.R46Q	AGGCCCGAGGCCC	.	24	21	2	0	.	0	0	0	0	0
UCK2	7371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165865482	165865482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UCK2-91	NM_012474	exon4	c.C412A	p.L138M	GGGATCCTGGCCT	.	145	19	190	0	.	7	7	0	0	0
ILDR2	387597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166891885	166891885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ILDR2-91	NM_199351	exon8	c.C1156T	p.R386C	GCCCGCGGCTTGC	.	61	45	114	0	.	0	0	0	0	0
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169559391	169559391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SELP-94	NM_003005	exon16	c.C2488T	p.P830S	CTTAAGGACTCGG	.	43	35	63	0	.	0	0	0	0	0
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	178412191	178412191	+	Missense_Mutation	SNP	C	C	T	rs200438546		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RASAL2-155	NM_170692	exon8	c.C1309T	p.R437C	AAATCACGTTTCC	.	107	29	145	0	.	1	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181702849	181702849	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CACNA1E-95	NM_000721	exon21	c.C3225T	p.P1075P	CATCCCCGACGTG	.	342	7	436	0	.	0	0	0	0	0
LGR6	59352	broad.mit.edu	37	1	202287206	202287206	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LGR6-160	NM_001017403	exon18	c.1775delT	p.V592fs	GGCCTGTCCCCCT	.	101	10	104	0	.	0	0	0	0	0
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203025515	203025515	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PPFIA4-230	NM_015053	exon5	c.C601A	p.R201R	GTGTCTCGGGAAG	.	147	118	262	1	.	0	0	0	0	0
KCNK2	3776	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215408439	215408439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNK2-90	NM_001017425	exon7	c.C1232T	p.T411M	GTTTGACGCCACA	.	46	36	87	1	.	11	0	11	0	0
ACBD3	64746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	226342403	226342403	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ACBD3-226	NM_022735	exon6	c.C1035T	p.S345S	TTTTTCGGAGCTG	.	150	134	194	0	.	12	0	12	0	0
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226555191	226555191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PARP1-727	NM_001618	exon17	c.C2396T	p.T799I	ATGTCAGTTTTGA	.	110	24	157	0	.	1	0	1	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	10	9	0	0	C|0.643;T|0.357	5	0	5	0	0
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228509610	228509610	+	Missense_Mutation	SNP	C	C	T	rs182318410		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OBSCN-403	NM_001271223	exon66	c.C17939T	p.P5980L	AAAGTCCGGCTGA	.	44	32	68	1	C|0.997;T|0.003	3	0	3	0	0
HIST3H3	8290	broad.mit.edu;bcgsc.ca	37	1	228612628	228612628	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HIST3H3-90	NM_003493	exon1	c.G399A	p.G133G	CCGCTCCCCGCGG	.	209	12	322	1	.	0	0	0	0	0
URB2	9816	broad.mit.edu;bcgsc.ca	37	1	229768022	229768022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	URB2-174	NM_014777	exon3	c.C133A	p.L45I	GTGTTACTTGATT	.	158	8	222	1	.	0	0	0	0	0
ARV1	64801	hgsc.bcm.edu	37	1	231131567	231131567	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARV1-154	NM_022786	exon4	c.510delA	p.A170fs	GACGGCAAAAAAA	.	32	23	71	1	.	0	0	0	0	0
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	234367444	234367444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC35F3-92	NM_173508	exon3	c.G565A	p.V189I	GGGCACGTCTGCA	.	216	172	338	0	.	1	0	1	0	0
FMN2	56776	hgsc.bcm.edu;bcgsc.ca	37	1	240370291	240370295	+	Frame_Shift_Del	DEL	AGGTT	AGGTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGGTT	AGGTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMN2-145	NM_020066	exon5	c.2179_2183del	p.727_728del	GCTCTCAGGTTAG	.	121	92	197	1	.	0	0	0	0	0
NET1	10276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5498113	5498113	+	Missense_Mutation	SNP	C	C	T	rs139037982		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NET1-290	NM_001047160	exon11	c.C1261T	p.R421W	AACGAACGGCACT	.	103	46	69	0	C|1.000;T|0.000	11	5	6	0	0
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	8007680	8007682	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAF3-69	NM_031923	exon3	c.2207_2209del	p.736_737del	AAAAAGAGAAGGA	.	160	65	121	0	.	0	0	0	0	0
OTUD1	220213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23729556	23729556	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OTUD1-433	NM_001145373	exon1	c.G1170C	p.V390V	GAATGTGAATATC	.	114	51	108	0	.	12	4	8	0	0
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	24873649	24873649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGAP21-235	NM_020824	exon26	c.C5569T	p.R1857C	GTAGGCGTTCCCT	.	244	102	196	0	.	45	20	25	0	0
KIAA1462	57608	hgsc.bcm.edu;bcgsc.ca	37	10	30316849	30316852	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TGTT	TGTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1462-72	NM_020848	exon3	c.2225_2228del	p.742_743del	GGCCTCTGTTTGT	.	232	92	190	1	.	0	0	0	0	0
ERCC6	2074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50691492	50691492	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC6-1153	NM_000124	exon9	c.T1892G	p.M631R	TCCTGCATCAATC	.	230	108	149	1	.	0	0	0	0	0
SGMS1	259230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	52103641	52103641	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGMS1-227	NM_147156	exon7	c.C234T	p.N78N	ATGGCCGTTCTTG	.	138	29	80	1	.	6	2	4	0	0
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55581863	55581863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDH15-193	NM_001142763	exon35	c.C5644A	p.P1882T	TCTGAGGGTCTGT	.	114	62	76	2	.	0	0	0	0	0
IPMK	253430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	59956132	59956132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IPMK-228	NM_152230	exon6	c.C956T	p.A319V	TGACGCGCATACA	.	83	34	56	0	.	2	1	1	0	0
ANK3	288	broad.mit.edu	37	10	61828580	61828580	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ANK3-107	NM_020987	exon37	c.12059delA	p.K4020fs	TGCATCTTTTTTT	.	162	7	122	0	.	0	0	0	0	0
RUFY2	55680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70105818	70105820	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTT	TTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RUFY2-91	NM_017987	exon17	c.1726_1728del	p.576_576del	TGCTTCTTTGTCT	.	65	27	56	0	.	0	0	0	0	0
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70426853	70426853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TET1-663	NM_030625	exon7	c.C4513T	p.R1505C	CGGCAGCGTACAG	.	138	59	109	0	.	0	0	0	0	0
NPFFR1	64106	hgsc.bcm.edu	37	10	72014863	72014863	+	Silent	SNP	G	G	A	rs60225321	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NPFFR1-22	NM_022146	exon4	c.C1143T	p.S381S	CAGCCCGGAGTCG	.	18	9	0	0	G|0.929;A|0.071	0	0	0	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73551036	73551036	+	Missense_Mutation	SNP	G	G	A	rs201887949		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH23-563	NM_022124	exon45	c.G6197A	p.R2066Q	ACAACCGGCCCAC	.	207	35	169	0	G|0.998;A|0.002	0	0	0	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73560424	73560424	+	Missense_Mutation	SNP	G	G	A	rs199903227		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH23-563	NM_022124	exon51	c.G7394A	p.R2465Q	TGGACCGGGAGAA	.	155	61	172	0	.	0	0	0	0	0
SYNPO2L	79933	broad.mit.edu;bcgsc.ca	37	10	75414029	75414029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SYNPO2L-91	NM_001114133	exon2	c.C115T	p.R39W	GGCTCCGTCTTCG	.	162	59	136	3	.	0	0	0	0	0
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79603319	79603319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLG5-98	NM_004747	exon6	c.G1010A	p.R337H	TCCAGGCGGCTCA	.	311	155	277	1	.	22	14	8	0	0
GRID1	2894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	87675969	87675969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRID1-142	NM_017551	exon5	c.G754A	p.D252N	GGCTGTCCTTGGA	.	65	31	55	1	.	2	1	1	0	0
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	87898579	87898579	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRID1-142	NM_017551	exon4	c.C723T	p.N241N	TACCTCGTTGATG	.	170	81	130	0	.	0	0	0	0	0
TNKS2	80351	hgsc.bcm.edu	37	10	93601946	93601946	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNKS2-541	NM_025235	exon16	c.1857delA	p.T619fs	CCCTACAAAAAAA	.	105	53	76	0	.	0	0	0	0	0
HELLS	3070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96353307	96353307	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HELLS-92	NM_018063	exon18	c.C2023T	p.R675X	AGTACACGAGCTG	.	200	99	134	1	.	0	0	0	0	0
MORN4	118812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	99376052	99376052	+	Missense_Mutation	SNP	C	C	T	rs150577682		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MORN4-90	NM_001098831	exon5	c.G409A	p.A137T	TGGAGGCGCTCTG	.	114	55	91	1	C|0.999;T|0.000	4	3	1	0	0
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	99426276	99426276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PI4K2A-226	NM_018425	exon7	c.C1166G	p.S389W	AGATATCGGACCC	.	56	15	56	0	.	14	0	14	0	0
CNNM1	26507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101124242	101124242	+	Silent	SNP	C	C	T	rs142898303		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CNNM1-68	NM_020348	exon5	c.C2097T	p.G699G	CTATGGCGTCCCA	.	83	38	61	0	C|1.000;T|0.000	0	0	0	0	0
FBXW4	6468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103371420	103371420	+	Missense_Mutation	SNP	G	G	A	rs140286143		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBXW4-226	NM_022039	exon8	c.C1084T	p.R362W	ACAGCCGTACAAC	.	206	82	204	0	G|1.000;A|0.000	122	56	66	0	0
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103716388	103716388	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C10orf76-90	NM_024541	exon22	c.C1671T	p.R557R	GTGCATGCGGATA	.	203	35	150	0	.	15	14	1	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	9	9	0	0	A|0.009;G|0.991	7	0	7	0	0
PDCD11	22984	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105177645	105177645	+	Missense_Mutation	SNP	G	G	A	rs11598673	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PDCD11-275	NM_014976	exon14	c.G1867A	p.A623T	GAGCCTGCAGGAC	.	279	134	223	2	G|0.954;T|0.046	3	2	1	0	0
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105803593	105803593	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL17A1-95	NM_000494	exon34	c.C2424T	p.I808I	AGTCACGATCTTG	.	209	93	189	0	.	0	0	0	0	0
RBM20	282996	broad.mit.edu	37	10	112541584	112541584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001134363	exon2	c.1217delC	p.A406fs	GTGTGGCCCCCCT	.	269	10	209	0	.	0	0	0	0	0
ADRA2A	150	hgsc.bcm.edu;broad.mit.edu	37	10	112838325	112838327	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GGC	GGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADRA2A-90	NM_000681	exon1	c.571_573del	p.191_191del	AAGAAGGGCGGCG	.	77	15	19	0	.	0	0	0	0	0
VWA2	340706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116049187	116049187	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VWA2-156	NM_001272046	exon12	c.C2061T	p.H687H	GATCCACGTGGCA	.	265	38	240	0	.	0	0	0	0	0
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121691801	121691803	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEC23IP-93	NM_007190	exon16	c.2729_2731del	p.910_911del	AGATCAAAGAAGA	.	109	32	83	0	.	0	0	0	0	0
MIR5694	100847064	bcgsc.ca;mdanderson.org	37	10	122358921	122358921	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	.	.	.	.	CTGAGTGCTCACT	.	140	57	105	0	.	0	0	0	0	0
FANK1	92565	hgsc.bcm.edu	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FANK1-91	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA	.	115	6	20	0	.	1	1	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000124	135000124	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNDC1-229	NM_152643	exon6	c.C1272T	p.D424D	CAGGGACGATGAG	.	19	12	1	0	.	18	9	9	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000148	135000148	+	Silent	SNP	T	T	C	rs3810965	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNDC1-229	NM_152643	exon6	c.T1296C	p.A432A	AGGAGCTAGGCAG	.	8	5	2	0	T|0.607;C|0.393	10	10	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000159	135000159	+	Missense_Mutation	SNP	A	A	G	rs3810964	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNDC1-229	NM_152643	exon6	c.A1307G	p.E436G	AGCTGGAAAGTGC	.	6	5	2	0	A|0.608;G|0.392	1	1	0	0	0
PIDD	55367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	800997	800997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PIDD-205	NM_145887	exon10	c.C1754T	p.T585I	AAGTGTGTGACCT	.	101	8	158	0	.	4	3	1	0	0
MUC5B	727897	bcgsc.ca	37	11	1271633	1271633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_002458	exon31	c.C13523A	p.P4508Q	CCCTTCCAGCACT	.	707	541	1117	7	.	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1651190	1651190	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRTAP5-5-23	NM_001001480	exon1	c.C120T	p.S40S	TGGCTCCGGCTGT	.	147	119	36	2	.	0	0	0	0	0
TH	7054	ucsc.edu;bcgsc.ca	37	11	2190951	2190951	+	Missense_Mutation	SNP	C	C	T	rs6356	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TH-90	NM_199292	exon3	c.G334A	p.V112M	TTAGCACGGCCTT	.	203	170	317	3	C|0.652;T|0.348	0	0	0	0	0
OR56A3	390083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5969261	5969261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR56A3-68	NM_001003443	exon1	c.G685T	p.V229L	CGAGCTGTGCTGA	.	90	71	96	0	.	0	0	0	0	0
FAM160A2	84067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6232915	6232915	+	Missense_Mutation	SNP	G	G	A	rs201012137		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM160A2-92	NM_032127	exon12	c.C2782T	p.R928C	CTTGGCGTTCAGG	.	54	9	78	0	G|1.000;A|0.000	11	8	3	0	0
ST5	6764	broad.mit.edu	37	11	8724250	8724250	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ST5-227	NM_005418	exon17	c.G2589A	p.R863R	CATGGGCCGCCGC	.	88	4	137	0	.	9	8	1	0	0
TEAD1	7003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	12923632	12923632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEAD1-90	NM_021961	exon10	c.845delA	p.Q282fs	GCCCTCAAAATGC	.	141	25	183	0	.	0	0	0	0	0
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19955447	19955447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NAV2-96	NM_001244963	exon8	c.A1726G	p.K576E	AGTGCCAAGAAGG	.	24	20	32	0	.	0	0	0	0	0
QSER1	79832	hgsc.bcm.edu;bcgsc.ca	37	11	32979554	32979554	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	QSER1-95	NM_001076786	exon8	c.4504delA	p.K1502fs	AAACGGAAAAAAT	.	102	79	102	1	.	0	0	0	0	0
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57077118	57077119	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNKS1BP1-91	NM_033396	exon6	c.3066_3067del	p.1022_1023del	CGGATCCTCTCTC	.	52	36	65	0	.	0	0	0	0	0
FADS2	9415	hgsc.bcm.edu	37	11	61607885	61607887	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TCC	TCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FADS2-92	NM_004265	exon3	c.398_400del	p.133_134del	TGTTCTTCCTCCT	.	193	14	292	1	.	0	0	0	0	0
SLC22A24	283238	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62850786	62850786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001136506	exon7	c.G1214A	p.R405H	ATTCGACGACCCA	.	153	129	175	2	.	0	0	0	0	0
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63276041	63276041	+	Missense_Mutation	SNP	C	C	T	rs144263194	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LGALS12-92	NM_001142535	exon2	c.C152T	p.T51M	ATGTCACGACGAT	.	70	56	139	0	C|1.000;T|0.000	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	5	5	0	0	G|0.005;C|0.995	29	0	29	0	0
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65319519	65319519	+	Silent	SNP	G	G	A	rs200551731		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LTBP3-91	NM_001130144	exon8	c.C1455T	p.D485D	TGGCCCGTCAGGG	.	132	110	185	1	G|1.000;A|0.000	27	3	24	0	0
RHOD	29984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66838933	66838933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RHOD-659	NM_014578	exon5	c.G493A	p.A165T	GTGGGCGCGGTGG	.	76	6	40	0	.	0	0	0	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68682296	68682296	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IGHMBP2-90	NM_002180	exon6	c.G717A	p.L239L	GGTTCTGTGCTGC	.	87	4	126	1	.	0	0	0	0	0
KCTD21	283219	ucsc.edu;bcgsc.ca	37	11	77885257	77885257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCTD21-69	NM_001029859	exon2	c.C344A	p.T115K	TTCAGTGTGATGT	.	70	59	141	2	.	4	0	4	0	0
PICALM	8301	broad.mit.edu	37	11	85694914	85694914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PICALM-659	NM_007166	exon14	c.C1511A	p.S504Y	CCCCCAGAATCTA	.	79	3	91	0	.	0	0	0	0	0
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616519	92616519	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAT3-73	NM_001008781	exon23	c.C12897T	p.C4299C	CGACTGCGACTCC	.	162	128	138	0	.	0	0	0	0	0
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108138056	108138056	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATM-3419	NM_000051	exon17	c.C2625T	p.S875S	AGAGAGCCAAAGT	.	74	14	129	0	.	0	0	0	0	0
DIXDC1	85458	broad.mit.edu;bcgsc.ca	37	11	111865744	111865744	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DIXDC1-91	.	.	.	.	TGTAGGCGACCAA	.	71	5	104	0	.	0	0	0	0	0
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111953573	111953576	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAAG	AAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C11orf57-155	NM_001082969	exon6	c.759_762del	p.253_254del	AAGGAAAAAGAGA	.	22	19	31	0	.	0	0	0	0	0
TIMM8B	26521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111956053	111956053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TIMM8B-90	NM_012459	exon2	c.G263A	p.R88Q	GCAAACCGACTGG	.	96	81	148	1	.	106	6	99	1	0
DSCAML1	57453	broad.mit.edu;bcgsc.ca	37	11	117303148	117303148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DSCAML1-159	NM_020693	exon30	c.C5279T	p.T1760I	ACGCCAGTACAGA	.	140	6	225	0	.	0	0	0	0	0
CD3D	915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118210583	118210583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CD3D-91	NM_000732	exon3	c.G313A	p.A105T	TGCCAGCCACGGT	.	161	134	235	0	.	6	6	0	0	0
TRIM29	23650	broad.mit.edu;bcgsc.ca	37	11	119983148	119983148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM29-291	NM_012101	exon9	c.G1741A	p.G581R	CAATCCCGTTGCC	.	334	8	497	1	.	0	0	0	0	0
GRIK4	2900	broad.mit.edu	37	11	120852883	120852883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRIK4-92	NM_014619	exon18	c.A2464G	p.M822V	ATTTTTATGGCTA	.	54	3	102	0	.	7	7	0	0	0
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6230433	6230433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VWF-163	NM_000552	exon3	c.G127A	p.V43I	TGTTGACGAAGTC	.	266	131	225	0	.	2	2	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6424203	6424203	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLEKHG6-295	NM_001144856	exon4	c.G327A	p.R109R	GGTGAGGCTGCAC	.	184	77	148	1	.	0	0	0	0	0
GPR162	27239	bcgsc.ca	37	12	6933232	6933232	+	Silent	SNP	G	G	A	rs141636256	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR162-92	NM_019858	exon2	c.G168A	p.A56A	CCTAGCGGGCACA	.	151	59	121	2	G|1.000;A|0.000	9	9	0	0	0
CSDA	8531	hgsc.bcm.edu	37	12	10875525	10875525	+	Silent	SNP	G	G	A	rs1042085	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CSDA-586	NM_003651	exon1	c.C186T	p.P62P	GGCTGCGGGGGCC	.	10	5	0	0	G|0.824;A|0.176	4	2	2	0	0
KIAA1467	57613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13229066	13229066	+	Missense_Mutation	SNP	C	C	T	rs142863695	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1467-92	NM_020853	exon11	c.C1631T	p.T544M	CAGTGACGGCTTC	.	186	84	174	0	C|0.999;T|0.001	0	0	0	0	0
EPS8	2059	broad.mit.edu	37	12	15814975	15814975	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPS8-94	NM_004447	exon9	c.C795T	p.R265R	GTCAATGCGGGCT	.	118	4	83	0	.	1	1	0	0	0
TM7SF3	51768	bcgsc.ca	37	12	27152534	27152534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TM7SF3-92	NM_016551	exon3	c.T322C	p.C108R	AAGTGCATGTACT	.	236	7	157	1	.	4	4	0	0	0
CCNT1	904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49086936	49086936	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCNT1-418	NM_001240	exon9	c.T2061C	p.Y687Y	GTCACTATAAGGA	.	226	84	149	0	.	5	4	1	0	0
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49170332	49170332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADCY6-90	NM_020983	exon7	c.C1414T	p.R472C	CCACGCGCATGTT	.	95	37	85	0	.	11	7	4	0	0
FKBP11	51303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49318027	49318028	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FKBP11-226	NM_016594	exon4	c.295_296del	p.99_99del	AGAAGACTCTGCT	.	158	69	121	0	.	0	0	0	0	0
ARF3	377	bcgsc.ca	37	12	49333524	49333524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARF3-227	NM_001659	exon4	c.G298A	p.V100I	CATTTACTCGCTC	.	248	7	211	0	.	133	128	5	0	0
C1QL4	338761	broad.mit.edu	37	12	49729769	49729769	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1QL4-90	NM_001008223	exon1	c.C492T	p.G164G	GTCGCCGCCGCGC	.	165	6	123	0	.	0	0	0	0	0
CSRNP2	81566	broad.mit.edu;bcgsc.ca	37	12	51457707	51457707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CSRNP2-90	NM_030809	exon5	c.T1454C	p.L485S	TCGGGCAATAGAG	.	157	7	96	0	.	47	46	1	0	0
KRT71	112802	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52946699	52946699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRT71-92	NM_033448	exon1	c.C163T	p.R55W	GGCTCCGGACACC	.	96	9	70	1	.	0	0	0	0	0
KRT76	51350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53170942	53170942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRT76-154	NM_015848	exon1	c.G134A	p.G45D	CTGAAGCCACAGG	.	124	56	124	0	.	0	0	0	0	0
SOAT2	8435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53497419	53497419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SOAT2-91	NM_003578	exon1	c.C58T	p.R20W	GGGGAGCGGGAGC	.	101	8	40	0	.	0	0	0	0	0
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53876621	53876621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAP3K12-604	NM_001193511	exon11	c.C1966T	p.R656W	CCCCCCGGCCCCG	.	54	8	26	0	.	17	12	5	0	0
ATF7	11016	bcgsc.ca	37	12	53946410	53946410	+	Silent	SNP	G	G	A	rs33921258	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATF7-455	NM_001130060	exon3	c.C60T	p.N20N	GTCCTCGTTTGTA	.	125	56	80	2	G|0.934;A|0.066	0	0	0	0	0
SMARCC2	6601	hgsc.bcm.edu;bcgsc.ca	37	12	56559113	56559113	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMARCC2-229	NM_139067	exon27	c.3221delC	p.P1074fs	GGTCCAGGGGGGG	.	36	16	41	0	.	0	0	0	0	0
NACA	4666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57113563	57113564	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NACA-254	NM_001113203	exon3	c.1750_1751del	p.584_584del	GGAGAAAGAGGTA	.	104	42	82	0	.	0	0	0	0	0
TAC3	6866	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57409529	57409530	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAC3-92	NM_013251	exon2	c.52_53del	p.18_18del	CCAAAGCTCTGAG	.	111	52	88	0	.	0	0	0	0	0
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57963112	57963112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIF5A-517	NM_004984	exon10	c.C893T	p.T298M	GCCGGACGACTAT	.	156	69	120	0	.	1	0	1	0	0
SLC16A7	9194	broad.mit.edu	37	12	60173233	60173233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC16A7-91	NM_001270622	exon6	c.A1210G	p.K404E	GAATATAAATACA	.	56	5	36	0	.	1	1	0	0	0
BEST3	144453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70049362	70049362	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BEST3-248	NM_032735	exon10	c.1332delC	p.P444fs	GGCCCTGGGGGGG	.	59	17	46	0	.	0	0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78400316	78400316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NAV3-279	NM_014903	exon8	c.G998A	p.R333H	CCTGGCGCAGCAA	.	214	6	174	1	.	0	0	0	0	0
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	88508192	88508210	+	Frame_Shift_Del	DEL	CTTACATTAACTAGTCTTT	CTTACATTAACTAGTCTTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTTACATTAACTAGTCTTT	CTTACATTAACTAGTCTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CEP290-96	NM_025114	exon20	c.2039_2052del	p.680_684del	AAATAACTTACAT	.	41	9	40	0	.	0	0	0	0	0
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102158675	102158675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GNPTAB-92	NM_024312	exon13	c.C2020T	p.R674C	GGAAGCGTTTTTC	.	35	16	23	0	.	3	1	2	0	0
IFT81	28981	bcgsc.ca	37	12	110630488	110630488	+	Nonsense_Mutation	SNP	C	C	T	rs200335504		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IFT81-91	NM_014055	exon14	c.C1534T	p.R512X	GAGCTACGACAGT	.	201	64	156	4	.	7	7	0	0	0
ATP2A2	488	hgsc.bcm.edu;bcgsc.ca	37	12	110784062	110784064	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP2A2-94	NM_001681	exon20	c.2916_2918del	p.972_973del	GAAAATCTCCTTG	.	268	107	200	0	.	0	0	0	0	0
OAS3	4940	bcgsc.ca	37	12	113400607	113400607	+	Missense_Mutation	SNP	G	G	A	rs201723513		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OAS3-1	NM_006187	exon9	c.G1984A	p.V662M	GGGCTCGTGCAAC	.	280	129	245	4	.	4	1	3	0	0
MLEC	9761	hgsc.bcm.edu;bcgsc.ca	37	12	121132922	121132923	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLEC-91	NM_014730	exon4	c.616_617del	p.206_206del	AAGGTCTGTGCAC	.	61	49	119	1	.	0	0	0	0	0
P2RX7	5027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121622497	121622497	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	P2RX7-268	NM_002562	exon13	c.C1680A	p.S560S	CGGCTCCCAGGAC	.	132	41	184	0	.	4	3	1	0	0
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123089580	123089580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNTC1-543	NM_014708	exon50	c.G5332A	p.E1778K	CTCTACGAACATC	.	95	50	89	0	.	4	1	3	0	0
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123466588	123466588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARL6IP4-90	NM_018694	exon4	c.G923A	p.R308H	TCATCCGCAAGGT	.	114	12	167	0	.	404	356	47	0	1
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130912861	130912861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RIMBP2-142	NM_015347	exon12	c.G2224A	p.E742K	GGTACTCGTCTCC	.	74	68	106	0	.	5	0	5	0	0
EP400	57634	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132504663	132504663	+	Silent	SNP	G	G	A	rs150248915	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EP400-520	NM_015409	exon22	c.G4347A	p.P1449P	TCACCCGCCCCGG	.	80	62	22	0	G|0.999;A|0.001	11	0	11	0	0
ATP12A	479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25262636	25262636	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP12A-137	NM_001185085	exon4	c.C408T	p.S136S	CTCCAGCGACAAG	.	37	32	62	0	.	0	0	0	0	0
PABPC3	5042	ucsc.edu	37	13	25671755	25671755	+	Silent	SNP	G	G	A	rs116223079	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PABPC3-72	NM_030979	exon1	c.G1419A	p.T473T	GTCAACGCAGCGT	.	99	18	154	3	G|0.977;A|0.023	2358	1	2353	4	0
PABPC3	5042	ucsc.edu	37	13	25671786	25671786	+	Missense_Mutation	SNP	G	G	A	rs113301206	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PABPC3-72	NM_030979	exon1	c.G1450A	p.V484M	CAGACAGTGGGTC	.	95	17	142	4	G|0.994;A|0.006	1207	1	1206	0	0
AMER2	219287	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	25744555	25744555	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_152704	exon1	c.C1203T	p.P401P	TGGCCCGGGGACA	.	91	73	118	1	.	0	0	0	0	0
RASL11A	387496	broad.mit.edu;bcgsc.ca	37	13	27847563	27847563	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RASL11A-522	NM_206827	exon4	c.C661T	p.Q221X	AACATGCAGGACC	.	181	7	245	0	.	12	12	0	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39264775	39264775	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FREM2-100	NM_207361	exon1	c.G3294T	p.L1098L	CTCCCTGAATGAT	.	22	6	40	0	.	0	0	0	0	0
LHFP	10186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39952603	39952603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LHFP-683	NM_005780	exon3	c.G446A	p.R149Q	GTCTGCCGGACTT	.	61	46	80	0	.	12	8	4	0	0
EBPL	84650	broad.mit.edu	37	13	50235138	50235138	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EBPL-90	NM_032565	exon4	c.A587C	p.Q196P	TCTTTCTGATGCA	.	105	3	137	0	.	84	84	0	0	0
PCDH8	5100	hgsc.bcm.edu	37	13	53420056	53420056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDH8-153	NM_002590	exon1	c.C2516T	p.A839V	GGAGGCGCGTCCG	.	5	5	0	0	.	0	0	0	0	0
SCEL	8796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	78211275	78211275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCEL-95	NM_144777	exon30	c.A1784T	p.Y595F	ATGGATATCAGGA	.	42	7	39	0	.	0	0	0	0	0
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95830011	95830011	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC4-515	NM_005845	exon13	c.C1677T	p.D559D	AGGATCGTCCAGG	.	127	35	172	0	.	0	0	0	0	0
PCCA	5095	broad.mit.edu;bcgsc.ca	37	13	100925452	100925452	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCCA-227	NM_001178004	exon12	c.917delT	p.I306fs	GTAGCATTTTTTT	.	56	9	66	0	.	0	0	0	0	0
COL4A1	1282	hgsc.bcm.edu;broad.mit.edu	37	13	110804812	110804812	+	Silent	SNP	C	C	T	rs146638269	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL4A1-654	NM_001845	exon51	c.G4797A	p.A1599A	GGGGGACGCCAGG	.	89	4	142	0	C|1.000;T|0.000	60	60	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	51	5	30	0	.	13	13	0	0	0
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	20216029	20216029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4Q3-71	NM_172194	exon1	c.C443T	p.A148V	TTCTTGCCTGCTG	.	342	26	508	0	.	0	0	0	0	0
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20345046	20345046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4K2-72	NM_001005501	exon1	c.C620T	p.A207V	TAATTGCGTTGTC	.	206	57	254	0	.	0	0	0	0	0
CMA1	1215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24976583	24976583	+	Missense_Mutation	SNP	G	G	A	rs13306251		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CMA1-90	NM_001836	exon2	c.C188T	p.T63M	GCAGCCGTCAGCA	.	101	75	109	1	G|0.163;T|0.000	0	0	0	0	0
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45675328	45675328	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MIS18BP1-90	NM_018353	exon15	c.A3198T	p.K1066N	ATTACTTTTATGA	.	182	145	242	1	.	17	1	16	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	9	9	0	0	C|0.569;G|0.431	2	0	2	0	0
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74193665	74193665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_194278	exon6	c.G2173A	p.V725M	AGCCCACGTTGAT	.	137	40	283	0	.	3	2	1	0	0
VSX2	338917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74711911	74711911	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VSX2-69	NM_182894	exon3	c.T499G	p.F167V	AAGGCATTCAACG	.	112	9	142	0	.	0	0	0	0	0
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90450919	90450919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TDP1-92	NM_018319	exon9	c.C944T	p.S315L	GAGAGTCGCCAAC	.	37	30	52	0	.	1	0	1	0	0
DYNC1H1	1778	bcgsc.ca	37	14	102508056	102508056	+	Missense_Mutation	SNP	C	C	A	rs10129889	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DYNC1H1-98	NM_001376	exon65	c.C12087A	p.H4029Q	GACCCACATTGTG	.	84	5	143	1	C|0.882;A|0.118	85	85	0	0	0
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104481118	104481118	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TDRD9-70	NM_153046	exon21	c.T2163C	p.V721V	GCATGTTGATTCT	.	48	39	57	0	.	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	5	5	0	0	T|0.603;C|0.397	10	0	10	0	0
AHNAK2	113146	ucsc.edu;bcgsc.ca	37	14	105409902	105409902	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AHNAK2-47	NM_138420	exon7	c.G11886A	p.T3962T	TTTGGCCGTCATG	.	164	123	355	3	.	0	0	0	0	0
OR4M2	390538	bcgsc.ca	37	15	22369046	22369046	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4M2-69	NM_001004719	exon1	c.C471T	p.I157I	TTCTATCATACAG	.	733	29	1141	2	.	0	0	0	0	0
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	23890894	23890894	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_019066	exon1	c.1996delC	p.Q666fs	CCTGCTGGGGGGG	.	31	29	5	0	.	0	0	0	0	0
MTMR10	54893	broad.mit.edu	37	15	31269078	31269078	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MTMR10-91	NM_017762	exon3	c.C202T	p.L68L	ATATCAGCTTTCC	.	102	3	129	0	.	0	0	0	0	0
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33358991	33358991	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMN1-23	NM_001103184	exon1	c.G1095A	p.S365S	CCTGGGCGACTCA	.	72	10	124	0	.	0	0	0	0	0
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42137956	42137956	+	Missense_Mutation	SNP	G	G	A	rs150220260		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JMJD7-PLA2G4B-135	NM_005090	exon20	c.G2171A	p.R724H	AGTCCCGCATCTG	.	35	26	65	0	G|1.000;A|0.000	17	1	16	0	0
SCG3	29106	broad.mit.edu	37	15	52011690	52011690	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCG3-91	NM_013243	exon12	c.C1374T	p.A458A	AGAAGCCGAGGCC	.	74	3	75	0	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	4	4	0	0	A|0.226;C|0.774	0	0	0	0	0
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65995235	65995235	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DENND4A-229	NM_001144823	exon16	c.G2199A	p.L733L	CATGGGCAAAGGG	.	34	31	67	0	.	4	0	4	0	0
CLK3	1198	bcgsc.ca	37	15	74921337	74921337	+	Silent	SNP	C	C	T	rs192164311		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CLK3-358	NM_001130028	exon12	c.C1704T	p.D568D	CTCTGACGGCCGG	.	121	5	127	1	C|0.999;T|0.000	77	76	1	0	0
FBXO22	26263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76225297	76225297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBXO22-658	NM_147188	exon7	c.G1066A	p.G356S	TTATTCGGCTTCT	.	98	23	98	0	.	27	24	3	0	0
C15orf40	123207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83679055	83679055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C15orf40-91	NM_001160116	exon2	c.G172A	p.D58N	TAGGATCAACTGC	.	183	153	262	0	.	4	0	4	0	0
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85360157	85360157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALPK3-337	NM_020778	exon1	c.C80T	p.P27L	TGGTGCCAGGAAG	.	220	21	212	0	.	0	0	0	0	0
POLG	5428	broad.mit.edu	37	15	89876828	89876830	+	In_Frame_Del	DEL	TGC	TGC	-	rs41550117	bycluster;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POLG-228	NM_002693	exon2	c.156_158del	p.52_53del	TGCTGTTGCTGCT	.	20	13	8	0	.	0	0	0	0	0
HDDC3	374659	bcgsc.ca	37	15	91475059	91475060	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HDDC3-91	NM_198527	exon3	c.283_284del	p.95_95del	TTGGGCAGAGTCT	.	33	7	60	0	.	0	0	0	0	0
ARRDC4	91947	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	98513945	98513945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARRDC4-90	NM_183376	exon7	c.G1172A	p.R391Q	AATTCCGGTTTCA	.	41	4	91	0	.	0	0	0	0	0
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100594247	100594247	+	Missense_Mutation	SNP	G	G	A	rs143817747	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAMTS17-228	NM_139057	exon16	c.C2150T	p.S717L	TTACCCGAGTCTT	.	57	43	65	0	G|0.999;A|0.001	0	0	0	0	0
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102358851	102358851	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4F15-68	NM_001001674	exon1	c.C462T	p.I154I	CCTTATCCACTCA	.	187	53	247	0	.	0	0	0	0	0
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	314146	314146	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITFG3-90	NM_032039	exon11	c.C1320T	p.H440H	CCTCCACGAGCTG	.	28	23	36	0	.	19	1	18	0	0
JMJD8	339123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	732820	732820	+	Missense_Mutation	SNP	C	C	T	rs113649865	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JMJD8-67	NM_001005920	exon9	c.G832A	p.V278I	TGAAGACGCTGGT	.	144	122	238	2	C|0.999;T|0.001	60	2	58	0	0
UBE2I	7329	bcgsc.ca	37	16	1364365	1364365	+	Silent	SNP	A	A	G	rs4610	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBE2I-290	NM_003345	exon3	c.A138G	p.P46P	CATTCCAGGAAAG	.	133	6	175	1	A|0.870;G|0.130	1	1	0	0	0
RNF151	146310	hgsc.bcm.edu	37	16	2018635	2018635	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF151-22	NM_174903	exon4	c.C447A	p.T149T	GGCCACCCTGGAC	.	25	23	4	0	.	0	0	0	0	0
PRSS41	360226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2854956	2854956	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001135086	exon5	c.G780C	p.L260L	TGGACTGTGGTAT	.	229	174	445	0	.	0	0	0	0	0
PKMYT1	9088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3024609	3024609	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PKMYT1-765	NM_182687	exon5	c.C921T	p.H307H	CCCACCGTGGGGC	.	162	122	277	1	.	23	2	21	0	0
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3340332	3340332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF263-94	NM_005741	exon6	c.G1826T	p.G609V	TTTGTGGGGAAAA	.	60	13	95	0	.	7	4	3	0	0
TVP23A	780776	hgsc.bcm.edu	37	16	10867203	10867203	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001079512	exon5	c.420delT	p.F140fs	GGTGCTAAAAAAA	.	68	50	114	1	.	0	0	0	0	0
ERCC4	2072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	14041727	14041727	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC4-665	NM_005236	exon11	c.G2274A	p.L758L	GCTTCTGATTGAG	.	79	8	76	0	.	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15168670	15168670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RRN3-91	NM_018427	exon11	c.C907A	p.L303I	GGTCGAGCCGTTC	.	59	6	87	1	.	8	8	0	0	0
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16184382	16184382	+	Missense_Mutation	SNP	G	G	A	rs45517537		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC1-94	NM_004996	exon19	c.G2581A	p.A861T	GACGGCGCCTTCG	.	64	54	130	0	G|1.000;A|0.000	11	2	9	0	0
COG7	91949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23415033	23415033	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COG7-90	NM_153603	exon13	c.G1785A	p.L595L	AATAAGCAACAGC	.	139	14	191	0	.	15	13	2	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	29997670	29997670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAOK2-521	NM_004783	exon16	c.C2077T	p.R693W	GAGCTGCGGCAGC	.	88	6	30	0	.	44	42	2	0	0
PRR14	78994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30664048	30664048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR14-90	NM_024031	exon4	c.G199A	p.V67M	GTCCCCGTGGTGC	.	175	47	242	0	.	0	0	0	0	0
RNF40	9810	broad.mit.edu;bcgsc.ca	37	16	30780607	30780607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF40-226	NM_014771	exon16	c.A2348G	p.D783G	AAAAGGATGATGC	.	216	8	334	0	.	28	27	1	0	0
ZNF646	9726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31091261	31091261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF646-153	NM_014699	exon2	c.G3616A	p.E1206K	AGCTGCGAGGTGT	.	152	26	218	1	.	6	5	1	0	0
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31473937	31473937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARMC5-24	NM_024742	exon3	c.C1069T	p.R357C	CTATGTCGTGAGG	.	39	34	67	0	.	7	0	7	0	0
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47697593	47697593	+	Missense_Mutation	SNP	G	G	A	rs56010117	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PHKB-154	NM_000293	exon24	c.G2284A	p.V762I	GGTACCGTTTCTG	.	50	33	68	0	G|0.999;A|0.001	0	0	0	0	0
NKD1	85407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50667165	50667165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NKD1-226	NM_033119	exon10	c.C886T	p.R296C	CGATCTCGCTCCC	.	221	181	312	1	.	30	0	30	0	0
DOK4	55715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57507532	57507532	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DOK4-227	NM_018110	exon8	c.C855T	p.S285S	AGCATAGCTGGAG	.	156	35	224	0	.	3	3	0	0	0
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	61761065	61761065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH8-161	NM_001796	exon9	c.A1469G	p.N490S	TTGTCATTGACAT	.	131	105	161	1	.	0	0	0	0	0
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67380244	67380244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC36-90	NM_018296	exon3	c.C284T	p.P95L	TACAACCGTTACC	.	72	59	110	0	.	0	0	0	0	0
C16orf86	388284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67701268	67701268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001012984	exon2	c.C172T	p.R58C	GACCAGCGCCCAG	.	156	135	193	1	.	1	0	1	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67859858	67859858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSNAXIP1-90	NM_018430	exon9	c.G861T	p.K287N	TCGCAAGGAGCAT	.	75	3	126	0	.	0	0	0	0	0
VPS4A	27183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	69352767	69352767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_013245	exon5	c.G385A	p.V129M	AACGACGTGGCCG	.	48	38	64	0	.	30	0	30	0	0
MLYCD	23417	hgsc.bcm.edu	37	16	83933193	83933193	+	Silent	SNP	C	C	T	rs62640904	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLYCD-90	NM_012213	exon1	c.C444T	p.D148D	GCTGGACGGCGGC	.	14	8	0	0	C|0.970;T|0.030	2	0	2	0	0
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84092913	84092913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MBTPS1-92	NM_003791	exon21	c.C2825T	p.A942V	CTGGGCGCCGTCT	.	105	15	155	0	.	1	1	0	0	0
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88706470	88706470	+	Missense_Mutation	SNP	G	G	A	rs189692693		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IL17C-90	NM_013278	exon3	c.G584A	p.R195H	TGCCCCGTTCAGT	.	92	10	115	0	G|0.999;A|0.000	0	0	0	0	0
CDT1	81620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88873021	88873021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDT1-227	NM_030928	exon7	c.C1061T	p.T354M	CCGCCACGGAGAA	.	218	59	99	0	.	18	12	6	0	0
CPNE7	27132	broad.mit.edu;bcgsc.ca	37	16	89661966	89661966	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CPNE7-90	NM_014427	exon16	c.G1719A	p.A573A	GCCCGCGCTCCGG	.	174	7	71	0	.	21	18	2	1	0
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90021667	90021667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DEF8-68	NM_207514	exon4	c.G398A	p.R133H	TCTCCCGCCCTGT	.	120	13	189	0	.	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3954155	3954155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZZEF1-93	NM_015113	exon36	c.C5783T	p.T1928M	CTGCGCGTCTGGG	.	94	72	110	0	.	4	0	4	0	0
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4071191	4071191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ANKFY1-93	NM_001257999	exon25	c.G3518A	p.R1173H	AGAAGACGTCCGC	.	49	5	70	0	.	8	7	1	0	0
SPNS3	201305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4348462	4348462	+	Missense_Mutation	SNP	G	G	C	rs141797761	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPNS3-153	NM_182538	exon3	c.G401C	p.R134P	CCCCCCGGGTACG	.	93	83	176	1	G|1.000;A|0.000	0	0	0	0	0
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5436698	5436698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NLRP1-274	NM_014922	exon10	c.C3059T	p.A1020V	GAAGCCGCCCTCT	.	28	25	33	0	.	0	0	0	0	0
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6502594	6502594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA0753-90	NM_014804	exon14	c.C2135T	p.S712L	ACTGACGAGCCAT	.	90	6	111	0	.	6	6	0	0	0
DVL2	1856	broad.mit.edu	37	17	7132483	7132483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DVL2-659	NM_004422	exon8	c.C928T	p.R310C	CAATGCGCCCGTC	.	88	4	141	0	.	7	7	0	0	0
NEURL4	84461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7224496	7224496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEURL4-46	NM_032442	exon20	c.T3295C	p.S1099P	TGGGGGAAGGAGG	.	113	20	229	0	.	10	6	4	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TP53-70225	NM_000546	exon6	c.C637T	p.R213X	TATGTCGAAAAGT	.	132	112	188	0	.	1	0	1	0	0
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7752034	7752034	+	Missense_Mutation	SNP	G	G	A	rs148573983		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KDM6B-205	NM_001080424	exon11	c.G2428A	p.V810M	GCCTCCGTGCTGG	.	61	48	105	0	G|1.000;A|0.000	3	0	3	0	0
MPRIP	23164	hgsc.bcm.edu;bcgsc.ca	37	17	17046886	17046886	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MPRIP-90	NM_015134	exon9	c.1052delC	p.A351fs	ATGAAGCCCCCCC	.	78	68	97	1	.	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18054476	18054476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO15A-97	NM_016239	exon38	c.C7526T	p.A2509V	CCCCTGCCAAACC	.	72	57	92	0	.	0	0	0	0	0
FLII	2314	broad.mit.edu	37	17	18152474	18152474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FLII-91	NM_002018	exon16	c.C1901A	p.P634H	GGCACAGGCTCCA	.	67	3	122	0	.	37	37	0	0	0
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26800779	26800779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC13A2-90	NM_001145975	exon1	c.G49A	p.V17M	CTGATCGTGTTCT	.	92	17	161	0	.	0	0	0	0	0
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26919548	26919548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPAG5-90	NM_006461	exon3	c.C714T	p.N238N	GAAGGCGTTACTT	.	71	58	119	0	.	6	0	6	0	0
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28405430	28405430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EFCAB5-70	NM_198529	exon15	c.C2935T	p.R979W	GCCAGGCGGAAAT	.	171	147	192	0	.	0	0	0	0	0
ATAD5	79915	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29204542	29204542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATAD5-93	NM_024857	exon16	c.C3893T	p.A1298V	AAAATGCAACATC	.	89	71	170	2	.	0	0	0	0	0
RFFL	117584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33338994	33338994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RFFL-90	NM_001017368	exon7	c.G1085A	p.R362Q	CAGGACCGGAAGA	.	129	25	152	1	.	4	2	2	0	0
ACACA	31	bcgsc.ca	37	17	35581989	35581989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ACACA-154	NM_198834	exon27	c.G3398A	p.R1133H	TTATGGCGAAGCT	.	218	6	283	2	.	0	0	0	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGAP23-205	NM_001199417	exon24	c.T3819C	p.D1273D	GGGGGATGAGGCG	.	7	7	0	0	C|0.823;G|0.000;T|0.177	1	0	1	0	0
GSDMA	284110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38130530	38130530	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GSDMA-90	NM_178171	exon9	c.C756T	p.D252D	AGGGGACGTACAC	.	76	61	114	0	.	0	0	0	0	0
TNS4	84951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38633890	38633890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNS4-155	NM_032865	exon13	c.C2098A	p.Q700K	TGACCTGCGAGGC	.	95	79	156	0	.	0	0	0	0	0
KRT33B	3884	broad.mit.edu	37	17	39521763	39521763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRT33B-90	NM_002279	exon4	c.G631A	p.V211M	CCTCCACGTTGAG	.	124	5	224	0	.	0	0	0	0	0
MLX	6945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40720854	40720856	+	Frame_Shift_Del	DEL	GAT	GAT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GAT	GAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLX-90	NM_170607	exon4	c.332_333del	p.111_111del	AGCGTAGATGATG	.	165	131	304	0	.	0	0	0	0	0
WNT3	7473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	44846089	44846089	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WNT3-522	NM_030753	exon4	c.A665A	p.Q222Q	TGCGCCCACCAGC	.	137	99	201	1	.	11	0	11	0	0
BZRAP1	9256	broad.mit.edu	37	17	56388998	56388998	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BZRAP1-229	NM_004758	exon18	c.C3015A	p.I1005I	AGCATCGATGGTG	.	154	5	194	0	.	2	1	1	0	0
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57754463	57754463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CLTC-835	NM_004859	exon17	c.G2710A	p.V904I	AGTCGCGTTGTTG	.	110	89	142	1	.	19	1	18	0	0
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61621675	61621675	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNH6-91	NM_030779	exon12	c.2407delC	p.P803fs	GAAATGCCCCCAA	.	65	49	120	0	.	0	0	0	0	0
DDX42	11325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61895428	61895428	+	Silent	SNP	C	C	T	rs145932119		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDX42-230	NM_203499	exon18	c.C2487T	p.S829S	GCATAGCGATAGT	.	80	9	85	0	C|1.000;T|0.000	44	43	1	0	0
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62271012	62271012	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEX2-91	NM_018469	exon4	c.C2083T	p.R695X	TTTCTCGGCCAGT	.	115	96	168	1	.	0	0	0	0	0
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66391298	66391298	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARSG-91	NM_001267727	exon10	c.C1176T	p.S392S	CGTCTCCGAGGTG	.	104	83	168	0	.	2	1	1	0	0
ABCA9	10350	bcgsc.ca	37	17	67028260	67028260	+	Silent	SNP	T	T	C	rs2302291	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCA9-95	NM_080283	exon10	c.A1434G	p.K478K	GGCTTCTTTCCCA	.	84	6	123	1	T|0.542;C|0.458	0	0	0	0	0
ABCA6	23460	hgsc.bcm.edu;bcgsc.ca	37	17	67125767	67125767	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCA6-159	NM_080284	exon7	c.917delT	p.L306fs	CCATATAAAAAAA	.	180	144	202	1	.	0	0	0	0	0
CPSF4L	642843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71257098	71257098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CPSF4L-68	NM_001129885	exon2	c.T128C	p.F43S	GTGAAGAAGTTGC	.	41	35	104	0	.	0	0	0	0	0
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	72838754	72838754	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRIN2C-228	NM_000835	exon13	c.C3522T	p.H1174H	GGAGCCGTGGCTG	.	90	22	82	0	.	11	7	4	0	0
TRIM65	201292	broad.mit.edu	37	17	73888574	73888574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM65-90	NM_001256124	exon3	c.C518A	p.A173D	ATGCAGGCCGAGT	.	55	5	133	0	.	3	3	0	0	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76424720	76424720	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DNAH17-142	NM_173628	exon77	c.C12474T	p.N4158N	CTCTGCGTTGGGG	.	122	34	226	0	.	1	1	0	0	0
SGSH	6448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78188920	78188920	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGSH-91	NM_000199	exon3	c.C267T	p.Y89Y	CAGCCCGTACATC	.	52	48	58	0	.	9	1	8	0	0
BAHCC1	57597	bcgsc.ca	37	17	79424537	79424537	+	Silent	SNP	C	C	T	rs34224936	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAHCC1-23	.	.	.	.	GCCGTGCTGGGGC	.	61	5	122	1	C|0.696;T|0.304	0	0	0	0	0
BAHCC1	57597	broad.mit.edu;bcgsc.ca	37	17	79424588	79424590	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAHCC1-23	.	.	.	.	AAGGCCAAGAAGA	.	55	8	101	0	.	0	0	0	0	0
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	6997824	6997824	+	Missense_Mutation	SNP	C	C	T	rs150510890		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LAMA1-149	NM_005559	exon33	c.G4723A	p.V1575I	AAAGAACGGCATC	.	110	34	117	0	C|1.000;T|0.000	0	0	0	0	0
PIEZO2	63895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10672692	10672692	+	Silent	SNP	G	G	A	rs146400447	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_022068	exon51	c.C8001T	p.G2667G	CCCATAGCCAGCC	.	53	16	78	1	G|0.998;A|0.002	0	0	0	0	0
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	25582999	25582999	+	Missense_Mutation	SNP	C	C	A	rs202045628	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH2-525	NM_001792	exon7	c.G982T	p.G328C	TGTCACCAGTCTC	.	173	145	271	1	.	5	0	5	0	0
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30672841	30672841	+	Missense_Mutation	SNP	G	G	A	rs148945908		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001105528	exon20	c.C2272T	p.R758C	CTAAACGCAGATT	.	43	33	89	0	G|1.000;A|0.000	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	31250678	31250678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASXL3-49	NM_030632	exon6	c.G519A	p.M173I	CTCAATGATGGTA	.	87	74	141	1	.	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	31324011	31324011	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASXL3-49	NM_030632	exon12	c.C4199G	p.S1400C	GTGATTCTGTAGC	.	137	8	150	0	.	0	0	0	0	0
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	43319234	43319234	+	Missense_Mutation	SNP	G	G	A	rs201451018	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC14A1-515	NM_001146037	exon6	c.G938A	p.C313Y	TCATGTGCCTGCA	.	88	8	145	0	G|0.999;T|0.001	0	0	0	0	0
LOXHD1	125336	broad.mit.edu;bcgsc.ca	37	18	44159642	44159642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_144612	exon13	c.G1760A	p.R587Q	AGCAGCCGTTCCC	.	256	10	393	2	.	0	0	0	0	0
LOXHD1	125336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44181267	44181267	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_144612	exon8	c.C1047T	p.I349I	CAGCTCGATGTGG	.	91	51	117	0	.	0	0	0	0	0
CXXC1	30827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47809921	47809921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CXXC1-131	NM_001101654	exon12	c.C1550T	p.T517M	AAGGACGTCTGGC	.	144	109	267	1	.	20	2	18	0	0
NEDD4L	23327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56063446	56063446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEDD4L-658	NM_001144967	exon31	c.G2873A	p.R958Q	ATTTACGAGAGAA	.	45	32	74	1	.	12	1	11	0	0
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60017106	60017106	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF11A-659	NM_001270951	exon3	c.G219A	p.P73P	TGGCCCGGATGAA	.	68	59	105	0	.	0	0	0	0	0
SERPINB2	5055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61564454	61564454	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SERPINB2-226	NM_002575	exon4	c.417+1G>A	.	CGGGAAGTAAGTG	.	35	24	43	0	.	0	0	0	0	0
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72347651	72347651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF407-92	NM_001146190	exon1	c.G4676A	p.R1559H	ACATTCGCACTCA	.	201	171	110	0	.	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	8	7	0	0	A|0.114;G|0.886	1	0	1	0	0
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1796766	1796766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_138813	exon16	c.G1697A	p.R566H	AGCAGGCGCCAGA	.	114	101	46	0	.	0	0	0	0	0
NCLN	56926	broad.mit.edu	37	19	3198895	3198895	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NCLN-90	NM_020170	exon5	c.C696T	p.P232P	GGCCCCCGTACGT	.	92	4	120	0	.	1	1	0	0	0
TBXA2R	6915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3595765	3595765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TBXA2R-90	NM_201636	exon3	c.G953A	p.R318H	TGGAGACGCCGGA	.	182	66	76	0	.	8	6	2	0	0
PLIN3	10226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4839518	4839518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLIN3-90	NM_005817	exon8	c.C991T	p.R331W	TGTCCCGGAACAT	.	89	69	132	1	.	84	3	81	0	0
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5244045	5244045	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PTPRS-357	NM_002850	exon11	c.C1437T	p.N479N	GTCCACGTTGTGC	.	61	47	46	0	.	1	0	1	0	0
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7529570	7529576	+	Frame_Shift_Del	DEL	GCAGGTG	GCAGGTG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GCAGGTG	GCAGGTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGEF18-228	NM_001130955	exon13	c.2334_2340del	p.778_780del	ATCGCCGCAGGTG	.	194	29	142	0	.	0	0	0	0	0
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8203066	8203066	+	Missense_Mutation	SNP	G	G	A	rs141919495		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBN3-100	NM_032447	exon9	c.C1160T	p.A387V	CCACGCGCATCAG	.	162	93	90	1	G|1.000;A|0.000	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399709	8399709	+	Silent	SNP	C	C	A	rs890852		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KANK3-90	NM_198471	exon3	c.G1002T	p.V334V	CGCCTCCACGGTC	.	5	4	0	0	T|0.129;G|0.871	1	0	1	0	0
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8464942	8464942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RAB11B-227	NM_004218	exon2	c.C236T	p.A79V	CCTCCGCGTGCGT	.	574	210	92	0	.	0	0	0	0	0
PIN1	5300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9959811	9959811	+	Missense_Mutation	SNP	C	C	T	rs112773610		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PIN1-227	NM_006221	exon4	c.C428T	p.T143M	TGCGGACGGGGGA	.	128	76	54	0	C|0.500;T|0.500	165	61	104	0	0
COL5A3	50509	broad.mit.edu	37	19	10088375	10088375	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL5A3-99	NM_015719	exon42	c.C3021A	p.G1007G	AGGGGAGCCCTGA	.	136	12	63	1	.	0	0	0	0	0
TYK2	7297	hgsc.bcm.edu;bcgsc.ca	37	19	10479028	10479028	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TYK2-1009	NM_003331	exon4	c.260delC	p.P87fs	TGGTTTGGGGGCA	.	509	156	285	2	.	0	0	0	0	0
ILF3	3609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10798173	10798173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ILF3-93	NM_017620	exon18	c.C2223T	p.H741H	GCCGCACGGGGGC	.	279	166	166	0	.	134	53	80	0	1
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	11218155	11218155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LDLR-94	NM_001195798	exon6	c.G905T	p.C302F	GAGACTGCCGGGA	.	351	22	253	0	.	78	75	3	0	0
ZNF563	147837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12429665	12429665	+	Missense_Mutation	SNP	G	G	A	rs201356487	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF563-90	NM_145276	exon4	c.C1174T	p.P392S	TATGAGGTCCACC	.	287	15	148	0	G|1.000;T|0.000	13	11	2	0	0
ASNA1	439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12858083	12858083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASNA1-92	NM_004317	exon5	c.G682A	p.V228I	CTGCCCGTCATCC	.	201	53	119	0	.	252	180	72	0	0
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12881872	12881872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOOK2-92	NM_001100176	exon10	c.G776T	p.R259M	TCCTCCCTGCCAC	.	215	21	118	0	.	10	6	4	0	0
MAST1	22983	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12980051	12980051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAST1-523	NM_014975	exon22	c.G2945A	p.R982H	CACTGCGTGCCAT	.	283	99	162	1	.	0	0	0	0	0
KLF1	10661	broad.mit.edu	37	19	12995769	12995769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KLF1-90	NM_006563	exon3	c.G1019A	p.R340H	TGGCAGCGGAAGG	.	265	5	119	0	.	0	0	0	0	0
FARSA	2193	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13035057	13035057	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FARSA-91	NM_004461	exon12	c.C1296T	p.V432V	GTTTCCGACCTCC	.	188	65	105	1	.	161	110	51	0	0
MIR639	693224	bcgsc.ca;mdanderson.org	37	19	14640387	14640387	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	.	.	.	.	AGGGGCGGGGCGG	.	168	63	29	0	.	2	1	1	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	10	8	1	0	C|0.671;A|0.329	0	0	0	0	0
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15292567	15292567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOTCH3-855	NM_000435	exon17	c.T2612C	p.F871S	CAGGAAAAGGAGC	.	422	31	83	0	.	1	1	0	0	0
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15355539	15355539	+	Silent	SNP	G	G	A	rs201923211		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRD4-767	NM_058243	exon12	c.C2193T	p.P731P	CCTCCCGGGGTGC	.	213	72	123	0	.	23	14	9	0	0
CYP4F8	11283	broad.mit.edu;bcgsc.ca	37	19	15740063	15740063	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYP4F8-90	.	.	.	.	CACGCTGCTGCGC	.	361	12	216	0	.	1	1	0	0	0
CHERP	10523	broad.mit.edu	37	19	16640581	16640583	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHERP-92	NM_006387	exon8	c.1005_1007del	p.335_336del	TGCTGTTGCTGCT	.	227	7	125	0	.	0	0	0	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	12	7	3	0	C|0.883;G|0.117	9	4	5	0	0
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17945987	17945987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JAK3-2418	NM_000215	exon15	c.G1952A	p.R651Q	ACCTTCCGGGCAG	.	145	13	85	0	.	6	6	0	0	0
CRTC1	23373	broad.mit.edu	37	19	18887993	18887993	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CRTC1-1361	NM_001098482	exon15	c.1754delC	p.S585fs	GAGAGTCCCCCCC	.	15	5	20	0	.	0	0	0	0	0
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19770410	19770410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP13A1-138	NM_020410	exon3	c.A677C	p.K226T	ACTCACTTGTTGC	.	192	23	94	0	.	0	0	0	0	0
PLEKHF1	79156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30165469	30165469	+	Silent	SNP	G	G	A	rs143273878	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLEKHF1-226	NM_024310	exon2	c.G723A	p.A241A	CGGAGCGTCCAGT	.	89	25	35	0	G|0.999;T|0.001	8	4	4	0	0
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31769263	31769263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSHZ3-232	NM_020856	exon2	c.C1436T	p.A479V	GTGACCGCTTTCT	.	155	25	107	0	.	3	3	0	0	0
DMKN	93099	ucsc.edu;bcgsc.ca	37	19	35991471	35991471	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DMKN-155	NM_033317	exon12	c.G1251A	p.A417A	TGATGACGCGTCC	.	174	68	126	2	.	0	0	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36218685	36218686	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLL4-697	NM_014727	exon17	c.4389_4390del	p.1463_1464del	CAAGTCTGTGGTG	.	264	39	259	0	.	0	0	0	0	0
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36229230	36229230	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLL4-697	NM_014727	exon37	c.C7920T	p.D2640D	AGTGGACGCCACG	.	229	84	161	2	.	116	60	56	0	0
KIRREL2	84063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36357214	36357214	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIRREL2-93	NM_199180	exon15	c.1947delC	p.V649fs	CATGGTCCCCCCC	.	32	18	31	0	.	0	0	0	0	0
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38028650	38028650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF793-68	NM_001013659	exon8	c.G1090C	p.E364Q	ACAGGAGAGAAGC	.	95	9	66	0	.	1	1	0	0	0
SPINT2	10653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38780794	38780794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPINT2-90	NM_021102	exon5	c.C427T	p.R143C	CCTTGCCGTGCAT	.	172	99	198	0	.	32	22	10	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39018344	39018344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RYR1-100	NM_000540	exon73	c.C10744T	p.R3582C	CCGGGTCGCGAGG	.	244	119	237	1	.	0	0	0	0	0
PLEKHG2	64857	hgsc.bcm.edu;bcgsc.ca	37	19	39905656	39905656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLEKHG2-274	NM_022835	exon3	c.134delC	p.S45fs	TGGCCTCCCCCCG	.	176	76	195	0	.	0	0	0	0	0
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40368454	40368454	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FCGBP-98	NM_003890	exon28	c.G12894A	p.V4298V	AGGTGGCACATGA	.	399	56	360	0	.	0	0	0	0	0
PSMC4	5704	bcgsc.ca	37	19	40486359	40486359	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSMC4-91	NM_006503	exon9	c.A1085T	p.D362V	TGGAAGACTGTAT	.	90	39	72	2	.	4	3	1	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LTBP4-93	.	.	.	.	CCGGGCGCCGTCG	.	60	11	9	0	.	7	6	0	0	1
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41132999	41132999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LTBP4-93	.	.	.	.	GGCCTCCCATATG	.	105	43	95	0	.	60	31	29	0	0
ADCK4	79934	broad.mit.edu	37	19	41211038	41211038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADCK4-319	NM_024876	exon7	c.G539A	p.R180H	CTCTGGCGGACCC	.	171	6	189	0	.	17	17	0	0	0
ITPKC	80271	broad.mit.edu;bcgsc.ca	37	19	41245300	41245300	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITPKC-115	NM_025194	exon7	c.C1887T	p.T629T	CCACACCGGCCTG	.	326	9	274	0	.	5	5	0	0	0
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRIK5-90	NM_002088	exon14	c.C1744T	p.R582C	GGGGGCGTGCCCG	.	74	6	61	0	.	16	15	1	0	0
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42914843	42914843	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LIPE-154	NM_005357	exon2	c.G1035A	p.A345A	CCCCAGCGCCTGC	.	171	39	37	0	.	6	5	1	0	0
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43411758	43411758	+	Missense_Mutation	SNP	G	G	A	rs200244036		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSG6-92	NM_001031850	exon4	c.C955T	p.R319C	TACTGCGGATGCC	.	156	65	137	0	.	0	0	0	0	0
PVR	5817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45157249	45157249	+	Missense_Mutation	SNP	C	C	T	rs3745145	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PVR-90	NM_001135769	exon4	c.C805T	p.R269C	GATGCTCGCAGCA	.	87	50	71	0	C|0.161;G|0.839	48	23	25	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	14	7	0	0	C|0.804;T|0.196	10	6	4	0	0
GPR4	2828	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46094248	46094248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR4-92	NM_005282	exon2	c.G877A	p.A293T	TGCGGGCGCCCTC	.	163	79	127	1	.	58	43	15	0	0
DMWD	1762	hgsc.bcm.edu	37	19	46289542	46289544	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DMWD-90	NM_004943	exon3	c.1210_1212del	p.404_404del	CTCGGGCTCCTCC	.	197	80	41	1	.	0	0	0	0	0
STRN4	29888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	47236402	47236402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STRN4-90	NM_001039877	exon5	c.G631A	p.G211R	CTGCCCCGTTGAG	.	73	6	41	0	.	40	38	2	0	0
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47423998	47423998	+	Missense_Mutation	SNP	G	G	A	rs142807428	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_004491	exon1	c.G2066A	p.R689Q	GCCGGCGGGATAA	.	119	51	64	0	G|0.999;A|0.000	5	2	3	0	0
ZC3H4	23211	broad.mit.edu;bcgsc.ca	37	19	47597799	47597799	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZC3H4-74	NM_015168	exon3	c.C228T	p.S76S	CCCTCCGGAGGTA	.	240	11	199	1	.	1	1	0	0	0
FAM83E	54854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49107038	49107038	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM83E-91	NM_017708	exon4	c.889delC	p.Q297fs	GTTTCTGGGGGGG	.	117	57	71	0	.	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49238683	49238683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RASIP1-228	NM_017805	exon4	c.C949T	p.R317C	CTGAGCGCTCCTT	.	189	92	50	0	.	29	18	11	0	0
DHDH	27294	bcgsc.ca	37	19	49445795	49445795	+	Missense_Mutation	SNP	G	G	A	rs140363616		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DHDH-90	NM_014475	exon5	c.G718A	p.V240M	GCCTCCGTGAGCG	.	264	129	247	5	G|1.000;A|0.000	5	4	1	0	0
TRPM4	54795	hgsc.bcm.edu	37	19	49699770	49699770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRPM4-91	NM_017636	exon17	c.C2284T	p.R762C	GGGGGCCGCTGCG	.	12	8	0	0	.	1	0	1	0	0
FUZ	80199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50311889	50311889	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FUZ-90	NM_025129	exon9	c.G900C	p.L300L	GAGGAGCAGCAGC	.	122	66	83	0	.	2	0	2	0	0
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	97	25	39	1	.	33	33	0	0	0
ZNF845	91664	broad.mit.edu	37	19	53856028	53856028	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_138374	exon4	c.C2100T	p.F700F	GACCTTCGGTCGA	.	98	3	70	0	.	0	0	0	0	0
LILRB4	11006	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55177714	55177714	+	Missense_Mutation	SNP	C	C	T	rs201125273		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LILRB4-93	NM_006847	exon8	c.C898T	p.R300C	TTCCAACGTCCTC	.	136	62	140	0	C|0.997;T|0.003	4	4	0	0	0
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55494012	55494012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NLRP2-120	NM_017852	exon6	c.G946A	p.V316I	GTGCCCGTCCTCC	.	129	53	88	0	.	0	0	0	0	0
TNNT1	7138	broad.mit.edu	37	19	55656925	55656925	+	Missense_Mutation	SNP	G	G	A	rs139279150	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNNT1-91	NM_001126132	exon6	c.C115T	p.R39C	TGGGGCGTTCCTC	.	47	4	35	0	G|1.000;T|0.000	0	0	0	0	0
CCDC106	29903	broad.mit.edu	37	19	56162847	56162847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC106-90	NM_013301	exon5	c.G512A	p.R171Q	AGGCCCGGGAGAG	.	330	8	195	0	.	1	1	0	0	0
ZNF470	388566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57088962	57088964	+	In_Frame_Del	DEL	TAT	TAT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TAT	TAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF470-92	NM_001001668	exon6	c.1165_1167del	p.389_389del	CGGCGATATTATC	.	161	57	104	0	.	0	0	0	0	0
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57328441	57328441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PEG3-164	NM_001146184	exon9	c.T1369C	p.C457R	TCCCACACTCATC	.	398	193	321	1	.	7	0	7	0	0
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58002904	58002904	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF419-90	NM_001098494	exon3	c.C141T	p.D47D	TGATGACGCTCAG	.	379	122	268	0	.	9	7	2	0	0
ZNF814	730051	ucsc.edu	37	19	58385033	58385033	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001144989	exon3	c.T1725C	p.S575S	CCCATAAGATCTT	.	113	1	88	0	.	6	4	2	0	0
ZSCAN22	342945	bcgsc.ca	37	19	58846516	58846516	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZSCAN22-91	NM_181846	exon2	c.C348T	p.S116S	CAAGAGCGGAGAG	.	207	86	164	3	.	1	1	0	0	0
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59028363	59028363	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZBTB45-90	NM_032792	exon2	c.C678T	p.G226G	TGGGCCGCCACCT	.	224	29	158	0	.	10	8	2	0	0
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1520736	1520736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TPO-332	NM_001206744	exon15	c.C2600T	p.S867L	TCACCTCGACGGT	.	70	57	122	1	.	0	0	0	0	0
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11960588	11960588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LPIN1-156	NM_001261428	exon21	c.G2716A	p.V906I	TTTACCGTCAACC	.	100	75	134	1	.	6	0	6	0	0
APOB	338	broad.mit.edu	37	2	21230766	21230766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	APOB-175	NM_000384	exon26	c.G8974A	p.V2992I	AATCGACTTGTGA	.	93	4	163	0	.	0	0	0	0	0
EFR3B	22979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25366724	25366724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_014971	exon18	c.G2043T	p.Q681H	TCCTCAGCTGACA	.	84	69	117	0	.	0	0	0	0	0
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32396391	32396391	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC30A6-90	NM_001193513	exon2	c.C39T	p.S13S	AAGATCCTTTTTT	.	98	42	165	0	.	1	0	1	0	0
FEZ2	9637	hgsc.bcm.edu	37	2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	rs1544655		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FEZ2-23	NM_001042548	exon1	c.C149T	p.P50L	CAGGCCGGGGCCG	.	4	4	0	0	T|0.817;C|0.180	1	0	1	0	0
SIX3	6496	hgsc.bcm.edu	37	2	45171842	45171842	+	Silent	SNP	A	A	G	rs62840660	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	5	5	0	0	A|0.059;G|0.941	0	0	0	0	0
TMEM247	388946	ucsc.edu	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	259	33	214	4	G|1.000;|0.000	0	0	0	0	0
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	47707899	47707900	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MSH2-2445	NM_000251	exon15	c.2523_2524del	p.841_842del	TGTAATAGAGTGT	.	112	91	155	0	.	0	0	0	0	0
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	61729431	61729431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	XPO1-229	NM_003400	exon5	c.G316A	p.V106I	CAACAACGTATTT	.	89	6	111	0	.	43	43	0	0	0
ARHGAP25	9938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	69049670	69049670	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGAP25-274	NM_001007231	exon10	c.1399delA	p.K467fs	ATCTTTAAAAATG	.	110	34	161	0	.	0	0	0	0	0
STAMBP	10617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74058012	74058012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STAMBP-524	NM_006463	exon3	c.C29T	p.P10L	GCCTCCCGCCCGA	.	77	65	99	0	.	19	0	19	0	0
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74763595	74763595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LOXL3-226	NM_032603	exon6	c.C916T	p.R306C	GGACACGGGCCTA	.	60	50	83	0	.	0	0	0	0	0
GNLY	10578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85922477	85922477	+	Silent	SNP	C	C	T	rs201139886		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GNLY-90	NM_006433	exon2	c.C87T	p.Y29Y	GTACTACGACCTG	.	145	128	196	0	C|0.999;T|0.000	1	0	1	0	0
GNLY	10578	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85924745	85924745	+	Silent	SNP	C	C	T	rs147680816		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GNLY-90	NM_006433	exon4	c.C372T	p.A124A	CGTGGCCGGAGAA	.	118	103	132	2	C|1.000;T|0.000	3	3	0	0	0
POU3F3	5455	hgsc.bcm.edu	37	2	105472055	105472055	+	Silent	SNP	T	T	C	rs186512421	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POU3F3-45	NM_006236	exon1	c.T87C	p.A29A	AGGGGCTGGCGGC	.	5	4	0	0	T|0.299;C|0.701	0	0	0	0	0
RGPD3	653489	bcgsc.ca	37	2	107049414	107049414	+	Missense_Mutation	SNP	G	G	A	rs199953271		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RGPD3-23	NM_001144013	exon17	c.C2446T	p.R816C	CTTGGCGAATCAT	.	551	67	675	7	.	0	0	0	0	0
RGPD3	653489	bcgsc.ca	37	2	107049425	107049425	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RGPD3-23	NM_001144013	exon17	c.T2435G	p.L812R	ATTTTCAGTAAAG	.	554	84	658	8	.	0	0	0	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459762	107459762	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ST6GAL2-191	NM_032528	exon2	c.G672A	p.A224A	CTTCATCGCCTTC	.	53	4	73	0	.	0	0	0	0	0
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109124031	109124031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GCC2-91	NM_181453	exon23	c.C5000T	p.A1667V	AAAATGCTTCCCG	.	228	191	381	1	.	1	0	1	0	0
EN1	2019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	119600797	119600799	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EN1-154	NM_001426	exon2	c.894_896del	p.298_299del	TTCTCGTTCTTCT	.	30	19	52	0	.	0	0	0	0	0
UGGT1	56886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128945079	128945079	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UGGT1-91	NM_020120	exon40	c.G4533A	p.P1511P	TGTCCCGGAGTGG	.	252	45	312	1	.	18	16	2	0	0
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	162813676	162813676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC4A10-229	NM_001178015	exon20	c.C2719T	p.R907W	GGCATTCGGGAGC	.	110	10	116	0	.	0	0	0	0	0
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu	37	2	163236465	163236465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNH7-95	NM_033272	exon14	c.C3029G	p.S1010C	AGTGCAGATGGAC	.	123	8	127	0	.	0	0	0	0	0
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	171509587	171509587	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO3B-530	NM_138995	exon35	c.3982delT	p.F1328fs	CCTTCCTTTTTTT	.	94	40	122	0	.	0	0	0	0	0
CDCA7	83879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174228042	174228042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDCA7-91	NM_031942	exon4	c.G473A	p.R158Q	CAGCGCGGAGTAC	.	214	29	337	0	.	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179543217	179543217	+	Silent	SNP	C	C	T	rs35112591	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTN-636	NM_001267550	exon144	c.G33834A	p.E11278E	GGGTACCTCTGGC	.	98	6	115	0	C|0.788;T|0.212	0	0	0	0	0
NAB1	4664	bcgsc.ca	37	2	191524587	191524587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NAB1-226	NM_005966	exon4	c.G685A	p.A229T	AAGTTGGCCAAAA	.	360	10	482	2	.	8	8	0	0	0
ALS2CR8	79800	hgsc.bcm.edu	37	2	203817288	203817288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALS2CR8-136	NM_024744	exon6	c.G313A	p.V105I	ATGATCGTTGCCA	.	43	4	55	0	.	1	1	0	0	0
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215820071	215820071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCA12-99	NM_173076	exon43	c.C6248T	p.S2083F	ATCCAGGAAAATG	.	201	161	219	0	.	0	0	0	0	0
CCDC108	255101	hgsc.bcm.edu;bcgsc.ca	37	2	219892999	219892999	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC108-94	NM_194302	exon12	c.1775delC	p.P592fs	ATGTCAGGGGGGT	.	95	78	141	1	.	0	0	0	0	0
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238617211	238617211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRFIP1-153	NM_001137550	exon2	c.C121T	p.R41W	GCAAAACGGGCGG	.	304	238	246	1	.	3	1	2	0	0
GPC1	2817	broad.mit.edu;bcgsc.ca	37	2	241401648	241401648	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPC1-153	NM_002081	exon3	c.G366A	p.L122L	GACGCTGCAGGCC	.	154	7	177	0	.	85	80	5	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZCCHC3-90	NM_033089	exon1	c.461_463del	p.154_155del	ATGAGCCGGCGGC	.	15	14	0	0	.	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	5	5	0	0	A|0.165;G|0.835	1	0	1	0	0
C20orf194	25943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3275220	3275220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C20orf194-68	NM_001009984	exon24	c.C2074T	p.R692W	AACTCCGTTTCTC	.	68	24	75	0	.	1	1	0	0	0
GFRA4	64096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3640605	3640605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GFRA4-90	NM_145762	exon5	c.G851A	p.R284H	AGGGAGCGTCTCT	.	61	25	60	0	.	0	0	0	0	0
LOC149950	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	31196470	31196470	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	.	.	.	.	TCTGTGCAGCCTC	.	38	14	23	0	.	0	0	0	0	0
BPIFB4	149954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31671498	31671498	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_182519	exon3	c.G495A	p.A165A	TGGGGCGGTGGGC	.	253	115	153	0	.	0	0	0	0	0
CEP250	11190	broad.mit.edu;bcgsc.ca	37	20	34092645	34092645	+	Missense_Mutation	SNP	C	C	T	rs147676735		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CEP250-27	NM_007186	exon30	c.C6448T	p.R2150W	CTGCAGCGGGAGC	.	191	11	179	2	C|1.000;T|0.000	8	8	0	0	0
DLGAP4	22839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35060497	35060497	+	Missense_Mutation	SNP	G	G	A	rs202172659		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLGAP4-94	NM_014902	exon2	c.G377A	p.R126H	TTCCCCGTGGCGA	.	134	62	98	0	G|0.999;A|0.001	0	0	0	0	0
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	37546897	37546897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PPP1R16B-228	NM_015568	exon11	c.C1292T	p.P431L	GGGCTCCGGTCAG	.	219	18	171	0	.	2	2	0	0	0
PLCG1	5335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39795024	39795024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLCG1-911	NM_182811	exon17	c.G1990A	p.E664K	GCCCACGAGAGCA	.	202	95	186	1	.	2	0	2	0	0
JPH2	57158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42815069	42815069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JPH2-91	NM_175913	exon1	c.C277T	p.R93C	CGTAGCGTCCCTT	.	150	8	138	0	.	1	1	0	0	0
TTPAL	79183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43118014	43118014	+	Silent	SNP	C	C	T	rs180792442		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTPAL-153	NM_001039199	exon5	c.C861T	p.N287N	CTGGAACGCGGTA	.	206	11	214	0	C|0.999;T|0.000	5	5	0	0	0
PABPC1L	80336	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43559220	43559220	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PABPC1L-47	NM_001124756	exon8	c.C1092T	p.Y364Y	ACTCTACGTGGCA	.	202	87	148	1	.	16	12	4	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	6	6	0	0	T|0.311;C|0.689	6	0	6	0	0
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45023110	45023110	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ELMO2-91	NM_182764	exon2	c.G12A	p.P4P	GTCTGACGGTGGT	.	379	156	250	0	.	0	0	0	0	0
OCSTAMP	128506	broad.mit.edu;mdanderson.org	37	20	45170427	45170427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_080721	exon3	c.G1187A	p.R396H	CGGGGACGCCGGG	.	31	12	13	0	.	0	0	0	0	0
SULF2	55959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46293982	46293982	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SULF2-293	NM_001161841	exon14	c.A1958C	p.K653T	TTTTTCTTCAGGT	.	171	79	94	1	.	148	66	82	0	0
SPATA2	9825	broad.mit.edu	37	20	48524772	48524772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPATA2-91	NM_006038	exon2	c.C256T	p.H86Y	CGCCGTGCAGAGC	.	181	6	164	0	.	2	2	0	0	0
BMP7	655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55777574	55777574	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP7-187	NM_001719	exon3	c.G717A	p.P239P	GTGCCGCGGATTG	.	107	46	84	0	.	2	0	2	0	0
RAE1	8480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55931510	55931510	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RAE1-226	NM_003610	exon4	c.C204T	p.C68C	TCGCTGCTGGGAA	.	141	61	93	0	.	0	0	0	0	0
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60499460	60499460	+	Missense_Mutation	SNP	C	C	T	rs1051676		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH4-282	NM_001794	exon11	c.C1697T	p.A566V	CCACGGCGGCAGT	.	241	96	208	0	C|1.000;T|0.000	4	1	3	0	0
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60509119	60509119	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH4-282	NM_001794	exon15	c.C2385T	p.Y795Y	GGACTACGACCTC	.	181	84	78	0	.	0	0	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60895706	60895706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LAMA5-93	NM_005560	exon50	c.T6668G	p.L2223R	GGGCCCAGGGGGC	.	98	19	21	1	.	12	11	1	0	0
OGFR	11054	broad.mit.edu	37	20	61443813	61443813	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OGFR-68	NM_007346	exon7	c.C846T	p.C282C	CCGCTGCAAGTTC	.	130	17	45	1	.	66	57	9	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OGFR-68	NM_007346	exon7	c.G1666A	p.E556K	CCAGCCGAGAGCC	.	45	8	3	0	.	275	274	1	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OGFR-68	NM_007346	exon7	c.G1670C	p.S557T	CCGAGAGCCCATC	.	45	8	3	0	.	292	292	0	0	0
SRMS	6725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62172334	62172334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRMS-521	NM_080823	exon8	c.C1304T	p.T435M	TGCAGCGTCTCGT	.	75	35	19	0	.	0	0	0	0	0
TNFRSF6B	8771	hgsc.bcm.edu;broad.mit.edu	37	20	62328346	62328346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF6B-651	NM_003823	exon1	c.C226T	p.R76C	CCACCGCGCCACT	.	154	10	23	0	.	8	8	0	0	0
PWP2	5822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45548439	45548439	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PWP2-91	NM_005049	exon20	c.G2517A	p.G839G	AGCCGGGACGCTG	.	109	98	154	0	.	2	0	2	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46931077	46931077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL18A1-90	NM_030582	exon41	c.C4277T	p.P1426L	AGGGTCCGCTGAA	.	66	17	110	0	.	236	165	71	0	0
SLC25A18	83733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18070754	18070754	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC25A18-90	NM_031481	exon9	c.C639T	p.N213N	GTTCAACGAGCTC	.	173	142	301	0	.	0	0	0	0	0
RTN4R	65078	ucsc.edu;bcgsc.ca	37	22	20230060	20230060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RTN4R-90	NM_023004	exon2	c.G596A	p.R199H	AGCCCACGGAAGG	.	184	151	153	2	.	82	0	82	0	0
AIFM3	150209	broad.mit.edu	37	22	21332292	21332292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AIFM3-280	NM_001146288	exon16	c.A1493G	p.Q498R	ATGCTCAGGGTAT	.	107	4	189	1	.	0	0	0	0	0
MYO18B	84700	broad.mit.edu	37	22	26422656	26422656	+	Missense_Mutation	SNP	C	C	T	rs192136611	by1000genomes;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO18B-142	NM_032608	exon43	c.C6716T	p.S2239L	CGCTGTCGAGGGA	.	73	4	103	0	C|0.999;G|0.000	0	0	0	0	0
SLC5A4	6527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32614516	32614516	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC5A4-90	NM_014227	exon15	c.C1965T	p.H655H	GTAGCCGTGAATA	.	75	66	119	0	.	0	0	0	0	0
TOM1	10043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35734781	35734781	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TOM1-91	NM_001135732	exon12	c.G1224A	p.A408A	TGGCGCGGTAAGC	.	37	5	33	0	.	1	1	0	0	0
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36900582	36900582	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXRED2-92	NM_001102371	exon3	c.C759A	p.T253T	GTAGTGGGTGGCC	.	87	75	135	1	.	3	0	3	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	7	7	0	0	A|0.354;G|0.646	0	0	0	0	0
EIF3L	51386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38273801	38273801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EIF3L-69	NM_016091	exon11	c.C1198T	p.R400C	ATGTTGCGCATGC	.	169	140	279	1	.	285	18	267	0	0
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40803553	40803553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGSM3-494	NM_015705	exon13	c.G1505A	p.R502H	GCTTCCGCAAGAA	.	35	34	13	0	.	30	0	30	0	0
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41572252	41572254	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EP300-2011	NM_001429	exon30	c.4781_4783del	p.1594_1595del	TTCAGGTCTTCTT	.	59	41	98	0	.	0	0	0	0	0
TOB2	10766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41832698	41832698	+	Missense_Mutation	SNP	G	G	A	rs139245662	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TOB2-227	NM_016272	exon2	c.C652T	p.R218C	CCATGCGAGGCTG	.	103	82	93	1	G|1.000;A|0.000	6	0	6	0	0
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46653903	46653903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PKDREJ-156	NM_006071	exon1	c.C5317T	p.H1773Y	CATTGTGTAACAA	.	97	20	136	2	.	2	2	0	0	0
CELSR1	9620	broad.mit.edu	37	22	46835126	46835126	+	Missense_Mutation	SNP	G	G	A	rs150197128		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CELSR1-525	NM_014246	exon3	c.C4366T	p.R1456W	GGCCCCGGAAGGT	.	140	4	198	1	G|1.000;A|0.000	0	0	0	0	0
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50899065	50899065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SBF1-90	NM_002972	exon24	c.G3044A	p.R1015Q	GGGTACCGCAGCT	.	87	67	167	1	.	12	0	12	0	0
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	447311	447311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHL1-583	NM_006614	exon28	c.A3592G	p.I1198V	TCATTTATTGGTG	.	75	62	118	0	.	4	0	4	0	0
IL17RE	132014	broad.mit.edu	37	3	9953188	9953190	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IL17RE-90	NM_153483	exon13	c.1254_1256del	p.418_419del	TCACTTCTCCTCA	.	276	15	262	0	.	0	0	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FANCD2-229	NM_001018115	exon26	c.G2406T	p.Q802H	CTGCCAGGAAACA	.	176	9	117	1	G|0.990;T|0.010	7	7	0	0	0
IRAK2	3656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	10219666	10219666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IRAK2-574	NM_001570	exon2	c.G239A	p.R80H	TGTGCCGCCTGGA	.	96	9	92	0	.	0	0	0	0	0
TMEM40	55287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12778317	12778317	+	Missense_Mutation	SNP	C	C	T	rs201284335		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMEM40-90	NM_018306	exon9	c.G490A	p.V164I	GGAGGACGAAATG	.	460	54	398	0	C|0.999;T|0.001	1	1	0	0	0
EFHB	151651	bcgsc.ca	37	3	19961331	19961331	+	Silent	SNP	T	T	C	rs2929362	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EFHB-22	NM_144715	exon3	c.A990G	p.S330S	CAGTACTGAAATT	.	164	6	120	0	T|0.442;G|0.068;C|0.104;A|0.385	0	0	0	0	0
NEK10	152110	broad.mit.edu	37	3	27346443	27346443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEK10-695	NM_199347	exon13	c.C823T	p.R275C	GTAGGCGCAGCAA	.	87	3	57	0	.	0	0	0	0	0
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	32774948	32774948	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CNOT10-91	NM_001256742	exon11	c.1429delA	p.K477fs	CCCAGCAAAAAAG	.	169	48	144	0	.	0	0	0	0	0
LRRFIP2	9209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37107722	37107722	+	Missense_Mutation	SNP	G	G	A	rs148787856	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRFIP2-91	NM_006309	exon23	c.C1559T	p.T520M	TCTCCCGTCTTCA	.	146	15	79	0	G|1.000;A|0.000	3	3	0	0	0
ITGA9	3680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37514857	37514857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITGA9-715	NM_002207	exon3	c.G326A	p.G109D	ATCGGGGCACGTC	.	274	117	184	2	.	1	1	0	0	0
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38618243	38618243	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCN5A-98	NM_198056	exon19	c.C3420T	p.S1140S	TGCTGTGCTGCCC	.	154	60	128	0	.	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	rs28931589	bycluster	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CTNNB1-24361	NM_001098209	exon3	c.G101A	p.G34E	ACTCTGGAATCCA	.	110	97	210	0	G|1.000;T|0.000	63	3	60	0	0
ZNF445	353274	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44488379	44488379	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF445-91	NM_181489	exon8	c.G2784A	p.P928P	TGCAGGCGGGCTA	.	101	84	113	1	.	1	0	1	0	0
ALS2CL	259173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46718502	46718502	+	Missense_Mutation	SNP	C	C	T	rs200208936		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALS2CL-155	NM_001190707	exon17	c.G1768A	p.V590M	CACCCACGCCCAG	.	46	35	91	0	C|0.999;T|0.000	1	0	1	0	0
SCAP	22937	broad.mit.edu	37	3	47461048	47461048	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCAP-91	NM_012235	exon13	c.1710delC	p.P570fs	GTGGCTGGGGGGC	.	139	7	212	0	.	0	0	0	0	0
NME6	10201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	48336637	48336637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NME6-115	NM_005793	exon5	c.C346T	p.R116C	CATGGCGTGCTCG	.	158	12	236	0	.	9	8	1	0	0
CELSR3	1951	broad.mit.edu;bcgsc.ca	37	3	48693263	48693263	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CELSR3-523	NM_001407	exon4	c.C4647T	p.S1549S	CAGCCCGCTCTGC	.	121	17	187	1	.	0	0	0	0	0
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49760038	49760038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GMPPB-90	NM_021971	exon5	c.G552T	p.Q184H	GATGCGCTGCAGC	.	150	42	225	0	.	0	0	0	0	0
RBM6	10180	broad.mit.edu	37	3	50097175	50097175	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RBM6-280	NM_005777	exon11	c.C2224T	p.R742X	GGAAAACGAAGGT	.	123	4	191	0	.	3	3	0	0	0
SEMA3B	7869	broad.mit.edu	37	3	50310793	50310795	+	RNA	DEL	CTT	CTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEMA3B-840	.	.	.	.	AATCTACTTCTTC	.	377	8	529	0	.	0	0	0	0	0
TLR9	54106	broad.mit.edu	37	3	52257538	52257538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TLR9-587	NM_017442	exon2	c.G794A	p.C265Y	TCCATGCAGGGGT	.	158	5	212	0	.	3	3	0	0	0
STAB1	23166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52550142	52550142	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STAB1-139	NM_015136	exon38	c.G4032A	p.G1344G	CCATGGGCAGTGC	.	122	13	106	1	.	2	2	0	0	0
STAB1	23166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554026	52554026	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STAB1-139	NM_015136	exon51	c.G5302C	p.D1768H	CCCACAGACGCCG	.	250	109	237	2	.	5	4	1	0	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52584594	52584594	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PBRM1-575	NM_018313	exon29	c.A4419T	p.P1473P	TCCAGCTGGATGT	.	71	39	51	0	.	18	10	8	0	0
ITIH1	3697	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52821065	52821065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITIH1-93	NM_002215	exon14	c.G1838T	p.G613V	TCAGGGGCATGGC	.	297	45	276	1	.	0	0	0	0	0
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52847474	52847474	+	Missense_Mutation	SNP	G	G	A	rs140372968	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITIH4-46	NM_002218	exon24	c.C2756T	p.P919L	ACTCCCGGGGGCC	.	197	92	179	1	G|1.000;A|0.000	12	5	7	0	0
ACTR8	93973	broad.mit.edu;bcgsc.ca	37	3	53911367	53911367	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ACTR8-91	NM_022899	exon5	c.C558T	p.I186I	TCTTCTGATAGGC	.	254	12	177	0	.	6	6	0	0	0
DNASE1L3	1776	ucsc.edu;bcgsc.ca	37	3	58196552	58196552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DNASE1L3-153	NM_004944	exon1	c.G82A	p.V28I	ACCTGACGTTGAA	.	258	110	275	2	.	2	2	0	0	0
FEZF2	55079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	62355881	62355881	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FEZF2-278	NM_018008	exon5	c.C1257T	p.C419C	AGTGGCGCACGTG	.	407	21	367	0	.	0	0	0	0	0
MAGI1	9223	hgsc.bcm.edu;bcgsc.ca	37	3	65372850	65372851	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAGI1-661	NM_015520	exon15	c.2467_2468del	p.823_823del	TTGATTTCTCTCT	.	147	62	87	1	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	7	7	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	10	10	0	0	G|0.252;C|0.748	0	0	0	0	0
FOXP1	27086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	71027087	71027087	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXP1-415	NM_001244815	exon10	c.1246delC	p.L416X	GAGTCAGGGGGGC	.	135	18	72	0	.	0	0	0	0	0
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	77623681	77623681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ROBO2-328	NM_002942	exon14	c.A2003G	p.Y668C	AAGGCTACCGAGT	.	244	14	152	0	.	0	0	0	0	0
GABRR3	200959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97744481	97744481	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GABRR3-68	.	.	.	.	AGGCCGCGCTTTG	.	151	65	97	0	.	0	0	0	0	0
TFG	10342	bcgsc.ca	37	3	100451359	100451359	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TFG-861	NM_006070	exon5	c.G423T	p.V141V	TACTGTGGATGGT	.	148	6	114	0	.	0	0	0	0	0
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108219012	108219012	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYH15-73	NM_014981	exon5	c.509delC	p.P170fs	ATGTGAGGGGGAG	.	150	16	91	0	.	0	0	0	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111766778	111766778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMPRSS7-70	NM_001042575	exon5	c.A545T	p.D182V	TTTACGACTCCCT	.	198	6	186	2	.	0	0	0	0	0
DRD3	1814	broad.mit.edu	37	3	113890760	113890760	+	Missense_Mutation	SNP	C	C	A	rs201554805	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DRD3-93	NM_000796	exon2	c.G80T	p.R27L	TGTGGGCGGGCCT	.	200	4	158	0	.	0	0	0	0	0
POPDC2	64091	broad.mit.edu	37	3	119379040	119379040	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POPDC2-90	NM_022135	exon1	c.T231C	p.I77I	AAGAACAATGTCC	.	280	7	238	0	.	0	0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124175505	124175505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KALRN-738	NM_003947	exon23	c.C3778T	p.R1260W	TCGGATCGGGAGG	.	396	9	306	0	.	1	1	0	0	0
CHST13	166012	hgsc.bcm.edu	37	3	126261180	126261180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHST13-90	NM_152889	exon3	c.A785G	p.D262G	GCTACGACGTCGT	.	14	5	0	0	.	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126726724	126726724	+	Missense_Mutation	SNP	G	G	A	rs149327396		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLXNA1-93	NM_032242	exon8	c.G2080A	p.A694T	GACTGCGCCTTCC	.	191	80	192	0	G|1.000;A|0.000	4	2	2	0	0
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126752807	126752807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLXNA1-93	NM_032242	exon31	c.C5638T	p.R1880W	CGGCAGCGGCTGC	.	467	98	266	0	.	58	49	9	0	0
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	131219274	131219274	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MRPL3-90	NM_007208	exon3	c.G369A	p.Q123Q	TCTTACCTGAAGT	.	115	48	91	0	.	1	0	1	0	0
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134911554	134911554	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB1-1492	NM_004441	exon11	c.C2019T	p.G673G	CATGGGCCAGTTC	.	404	171	337	1	.	0	0	0	0	0
PRR23B	389151	hgsc.bcm.edu	37	3	138739402	138739402	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR23B-135	NM_001013650	exon1	c.C102T	p.P34P	GCCCGCGGGCTCC	.	7	4	0	0	.	0	0	0	0	0
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140407267	140407267	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM42-227	NM_152616	exon3	c.C1743T	p.S581S	AGACAGCCAGTCT	.	215	76	140	0	.	0	0	0	0	0
ANKUB1	389161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	149485286	149485286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001144960	exon5	c.A1163C	p.K388T	ACAGGTTTGCTGC	.	190	14	131	0	.	0	0	0	0	0
GPR87	53836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151011993	151011993	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR87-153	NM_023915	exon3	c.G1041A	p.S347S	AACTTCCGATCTT	.	381	182	276	1	.	0	0	0	0	0
ARHGEF26	26084	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	153970947	153970947	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGEF26-47	NM_001251962	exon13	c.C2343T	p.S781S	CAGCAGCGGGAAG	.	481	62	349	1	.	0	0	0	0	0
SI	6476	broad.mit.edu	37	3	164712168	164712168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SI-104	NM_001041	exon41	c.A4718G	p.E1573G	AAAGTTTCATTCC	.	325	8	236	0	.	0	0	0	0	0
LRRC34	151827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169511575	169511575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC34-90	NM_001172779	exon11	c.G1243A	p.V415M	GCTCCACATCTGT	.	195	21	108	0	.	1	1	0	0	0
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169985778	169985778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRKCI-1378	NM_002740	exon5	c.G440A	p.R147H	CCAAGCGTTTCAA	.	93	33	56	0	.	0	0	0	0	0
FNDC3B	64778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172070715	172070715	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FNDC3B-155	NM_001135095	exon22	c.T2637C	p.P879P	CTACCCTGATTCA	.	177	69	133	2	.	12	6	6	0	0
USP13	8975	bcgsc.ca	37	3	179437819	179437819	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP13-659	NM_003940	exon7	c.T897C	p.H299H	TATGCATGGGGTG	.	126	6	70	1	.	0	0	0	0	0
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183732094	183732094	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC5-137	NM_005688	exon2	c.G87A	p.T29T	TCTGTGCGTCCCA	.	130	14	93	0	.	16	14	2	0	0
ECE2	9718	broad.mit.edu	37	3	183994339	183994339	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ECE2-94	NM_001100121	exon2	c.110delC	p.S37fs	GGGCCTCCCCGGA	.	198	13	147	0	.	0	0	0	0	0
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184042024	184042025	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EIF4G1-344	NM_001194946	exon18	c.2529_2530del	p.843_844del	AGTGACTGTGAAC	.	376	92	298	0	.	0	0	0	0	0
EPHB3	2049	ucsc.edu;bcgsc.ca	37	3	184290407	184290407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB3-1455	NM_004443	exon3	c.G299A	p.R100Q	GGCGGCGGGATGT	.	310	156	249	3	.	4	2	2	0	0
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184297350	184297350	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB3-1455	NM_004443	exon10	c.C1887T	p.D629D	GATCGACGTGTCC	.	441	47	390	0	.	10	9	1	0	0
FETUB	26998	hgsc.bcm.edu;broad.mit.edu	37	3	186362544	186362544	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FETUB-92	NM_014375	exon4	c.429delA	p.S143fs	AGTTTCAAAAAAA	.	60	29	49	0	.	0	0	0	0	0
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194080702	194080702	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC15-71	NM_001135057	exon3	c.C1089T	p.D363D	GTTCCCGTCCAGG	.	227	108	231	0	.	0	0	0	0	0
APOD	347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195306326	195306326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	APOD-516	NM_001647	exon2	c.A7C	p.M3L	GCAGCATCACCAT	.	71	27	56	0	.	11	11	0	0	0
MUC20	200958	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195453329	195453329	+	Nonsense_Mutation	SNP	C	C	T	rs73203946	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_152673	exon3	c.C1342T	p.R448X	AGCAGCCGAGGGA	.	682	162	575	0	C|0.967;A|0.033	41	32	9	0	0
MUC4	4585	ucsc.edu;bcgsc.ca	37	3	195516022	195516022	+	Missense_Mutation	SNP	G	G	A	rs148722108	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MUC4-90	NM_018406	exon2	c.C2429T	p.A810V	CCACTCGCCCCGG	.	213	84	193	2	G|0.999;A|0.001	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195516579	195516579	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MUC4-90	NM_018406	exon2	c.A1872G	p.T624T	GGTGCTTGTGGAA	.	282	117	246	0	.	0	0	0	0	0
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197598289	197598289	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRCH3-91	NM_032773	exon19	c.C2086T	p.R696X	CATGTGCGACCTC	.	334	161	249	1	.	9	7	2	0	0
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197702954	197702954	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LMLN-91	NM_001136049	exon4	c.C403T	p.R135X	GTCCGTCGACCTG	.	153	69	119	0	.	1	1	0	0	0
RGS12	6002	broad.mit.edu	37	4	3432439	3432439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RGS12-226	NM_002926	exon17	c.G3871A	p.G1291R	CCCCCCGGGCAGA	.	40	3	34	0	.	24	23	1	0	0
HGFAC	3083	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3444827	3444827	+	Missense_Mutation	SNP	C	C	T	rs140691145		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HGFAC-514	NM_001528	exon3	c.C349T	p.R117C	GGGGGCCGCATGC	.	38	31	26	0	C|1.000;T|0.000	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	45	10	4	0	.	0	0	0	0	0
PSAPL1	768239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7436430	7436430	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSAPL1-68	NM_001085382	exon1	c.G177A	p.A59A	AGACTTCGCGGTG	.	179	47	314	1	.	4	3	1	0	0
FAM184B	27146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17711136	17711136	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM184B-23	NM_015688	exon2	c.C273T	p.C91C	CTCTGCGCAGCCC	.	66	50	91	0	.	0	0	0	0	0
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	36069850	36069851	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARAP2-93	NM_015230	exon33	c.4793_4794del	p.1598_1598del	GGACTCTTTATCA	.	38	34	56	0	.	0	0	0	0	0
TMEM165	55858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56283354	56283354	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMEM165-514	NM_018475	exon3	c.T549C	p.P183P	GAGCCCTGATGAG	.	52	43	100	0	.	35	2	33	0	0
CXCL9	4283	broad.mit.edu	37	4	76924817	76924817	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CXCL9-227	NM_002416	exon4	c.312delA	p.K104fs	TTGATGTTTTTTC	.	14	5	24	0	.	0	0	0	0	0
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	78987147	78987147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FRAS1-68	NM_001166133	exon2	c.G85A	p.V29I	GCTTGTGTCTATC	.	53	41	95	0	.	0	0	0	0	0
BMP3	651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	81967503	81967503	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP3-518	NM_001201	exon2	c.928delA	p.K310fs	CAGTATAAAAAGG	.	79	69	108	0	.	0	0	0	0	0
BMP3	651	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	81967507	81967507	+	Missense_Mutation	SNP	A	A	T	rs138325448	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP3-518	NM_001201	exon2	c.A932T	p.K311M	ATAAAAAGGATGA	.	80	73	103	0	A|1.000;G|0.000	0	0	0	0	0
METAP1	23173	bcgsc.ca	37	4	99982342	99982342	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_015143	exon11	c.T1035G	p.T345T	TTGGACTGCGGTG	.	101	44	180	4	.	10	5	5	0	0
ADH7	131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100349278	100349278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADH7-227	NM_001166504	exon4	c.C373T	p.R125C	GGTTGCGACAAGC	.	133	106	157	0	.	0	0	0	0	0
DDIT4L	115265	bcgsc.ca	37	4	101108877	101108877	+	Missense_Mutation	SNP	T	T	C	rs201713115		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDIT4L-91	NM_145244	exon3	c.A539G	p.K180R	TAAAGTTTTTTCT	.	104	5	146	1	.	7	7	0	0	0
TET2	54790	broad.mit.edu;bcgsc.ca	37	4	106196951	106196951	+	Missense_Mutation	SNP	A	A	G	rs2454206	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TET2-4618	NM_001127208	exon11	c.A5284G	p.I1762V	TCTCACATAATCC	.	57	5	83	0	A|0.768;G|0.232	1	1	0	0	0
QRFPR	84109	hgsc.bcm.edu;bcgsc.ca	37	4	122301511	122301513	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	QRFPR-90	NM_198179	exon1	c.290_292del	p.97_98del	GAATGCAGAAGAA	.	134	110	142	1	.	0	0	0	0	0
FBXW7	55294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153249473	153249473	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBXW7-6296	NM_033632	exon9	c.T1305C	p.I435I	TCCACTAATGATG	.	130	111	170	2	.	3	0	3	0	0
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	159092445	159092445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM198B-90	NM_016613	exon2	c.G83C	p.S28T	CGGCTGCTCCAGA	.	123	105	138	0	.	6	0	6	0	0
SNX25	83891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186272686	186272686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SNX25-273	NM_031953	exon14	c.G1897A	p.V633M	ATCGACGTGCAGG	.	68	49	98	0	.	4	0	4	0	0
FAT1	2195	broad.mit.edu	37	4	187539571	187539574	+	Frame_Shift_Del	DEL	ATCT	ATCT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAT1-34	NM_005245	exon10	c.8166_8169del	p.2722_2723del	GATGAGATCTATC	.	111	8	193	0	.	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu	37	5	192355	192355	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC14B-69	NM_001080478	exon1	c.C702A	p.A234A	TCTGGCCCAGGTG	.	159	12	13	0	.	0	0	0	0	0
DAP	1611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10681252	10681252	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAP-90	NM_004394	exon4	c.G225A	p.A75A	CACCTGCGCAGCC	.	94	35	64	1	.	52	24	28	0	0
IL7R	3575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	35867541	35867541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IL7R-157	NM_002185	exon3	c.355delA	p.K119fs	ACCTGCAAAAAAA	.	70	20	37	0	.	0	0	0	0	0
DDX4	54514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55056049	55056049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDX4-227	NM_001166533	exon4	c.G149A	p.R50Q	CTTCTCGAAGAGA	.	150	68	97	1	.	0	0	0	0	0
DDX4	54514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55063742	55063742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDX4-227	NM_001142549	exon7	c.G368T	p.R123L	CAACACGGAACAG	.	220	108	173	1	.	0	0	0	0	0
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	60224762	60224765	+	Frame_Shift_Del	DEL	TTTA	TTTA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTTA	TTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC8-227	NM_000082	exon2	c.99_102del	p.33_34del	TCTGTCTTTATTT	.	107	44	75	0	.	0	0	0	0	0
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	70858262	70858262	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BDP1-92	NM_018429	exon38	c.7658delA	p.E2553fs	GCCAGGAAAAAAA	.	111	13	66	0	.	0	0	0	0	0
NSA2	10412	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	74066537	74066539	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NSA2-91	NM_001271665	exon4	c.424_426del	p.142_142del	AAGAGAAAGAAGA	.	608	256	392	0	.	0	0	0	0	0
PDE8B	8622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76709039	76709039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PDE8B-90	NM_003719	exon17	c.G1816A	p.A606T	ATCGAAGCCAACT	.	232	25	161	1	.	35	35	0	0	0
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	92929487	92929487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NR2F1-227	NM_005654	exon3	c.G1211A	p.R404H	TCATCCGCGATAT	.	332	165	332	1	.	1	1	0	0	0
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	93807171	93807171	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA0825-91	NM_001145678	exon9	c.1721delA	p.K574fs	ACTCACTTTTTAG	.	136	70	107	0	.	0	0	0	0	0
WDR36	134430	broad.mit.edu	37	5	110428267	110428267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WDR36-92	NM_139281	exon1	c.G281T	p.R94L	TCAAGCGCCGGTT	.	116	10	59	2	.	0	0	0	0	0
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115813772	115813772	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEMA6A-92	NM_020796	exon14	c.G1506A	p.A502A	AGAGAACGCAACA	.	260	29	207	0	.	7	7	0	0	0
SEPT8	23176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132097247	132097247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEPT8-70	NM_015146	exon7	c.C865T	p.R289C	GCTCGCGGAGGTC	.	156	72	104	0	.	74	41	33	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	10	10	0	0	G|0.980;C|0.020	0	0	0	0	0
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132569152	132569152	+	Silent	SNP	G	G	A	rs190908572		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FSTL4-91	NM_015082	exon8	c.C972T	p.S324S	GTGGCCGGAAGCA	.	290	133	276	1	G|0.999;A|0.000	19	10	9	0	0
BRD8	10902	broad.mit.edu;bcgsc.ca	37	5	137502305	137502305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRD8-91	NM_006696	exon11	c.C1118A	p.P373H	TCTACAGGGGGTG	.	266	8	208	1	.	13	11	2	0	0
KDM3B	51780	broad.mit.edu	37	5	137708468	137708468	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KDM3B-542	NM_016604	exon2	c.298delC	p.P100fs	TGGGCGCCCCGTG	.	194	7	143	0	.	0	0	0	0	0
EGR1	1958	broad.mit.edu	37	5	137803250	137803250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EGR1-227	NM_001964	exon2	c.G1112A	p.R371H	AGTGCCGCATCTG	.	237	7	188	0	.	4	4	0	0	0
APBB3	10307	broad.mit.edu;bcgsc.ca	37	5	139939977	139939977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	APBB3-92	NM_006051	exon11	c.G1166A	p.R389H	CTCTGACGGCCCA	.	430	12	337	0	.	117	111	6	0	0
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140174695	140174695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHA2-94	NM_031495	exon1	c.C146T	p.A49V	GCATCGCGCAGGA	.	158	78	46	0	.	3	3	0	0	0
PCDHA12	56137	broad.mit.edu;bcgsc.ca	37	5	140256782	140256782	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_018903	exon1	c.C1725T	p.G575G	AGGAGGCGCAGTT	.	672	332	57	2	.	0	0	0	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573347	140573347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHB10-92	NM_018930	exon1	c.G1222A	p.A408T	GAAGGCGCGCTGG	.	227	6	155	0	.	2	2	0	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574170	140574175	+	In_Frame_Del	DEL	AGGCCG	AGGCCG	-	rs58244182	bycluster;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHB10-92	NM_018930	exon1	c.2045_2050del	p.682_684del	AGGCCCAGGCCGA	.	92	20	13	0	-|0.750;GGCCGA|0.250	0	0	0	0	0
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140725147	140725147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_032011	exon1	c.C1547T	p.A516V	TATACGCGCTGAG	.	527	178	340	0	.	4	2	2	0	0
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140725295	140725295	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_032011	exon1	c.C1695T	p.P565P	GTACCCCGCCCTC	.	468	99	190	0	.	6	6	0	0	0
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140725299	140725299	+	Missense_Mutation	SNP	C	C	T	rs201819603	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_032011	exon1	c.C1699T	p.L567F	CCCGCCCTCCCCA	.	454	92	183	0	C|0.999;T|0.001	8	8	0	0	0
PCDHGA12	26025	hgsc.bcm.edu	37	5	140812776	140812776	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA12-27	NM_032094	exon1	c.2450delT	p.L817fs	TCTTTCTTTTTTT	.	70	34	51	4	.	0	0	0	0	0
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156746911	156746911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYFIP2-22	NM_001037332	exon14	c.C1498T	p.R500W	GCGGTACGGAAGA	.	210	86	197	0	.	10	5	5	0	0
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169685169	169685169	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LCP2-23	NM_005565	exon16	c.G972A	p.V324V	CTGATGCACTGTG	.	155	18	120	0	.	0	0	0	0	0
STC2	8614	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	172744904	172744904	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STC2-93	NM_003714	exon4	c.C855T	p.S285S	GCTTCCGGAAGGT	.	160	10	119	0	.	28	28	0	0	0
KIAA1191	57179	hgsc.bcm.edu;bcgsc.ca	37	5	175775319	175775320	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1191-91	NM_020444	exon7	c.499_500del	p.167_167del	GGCTGCCTCTCTT	.	155	78	117	2	.	0	0	0	0	0
RNF44	22838	broad.mit.edu;bcgsc.ca	37	5	175959061	175959061	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF44-658	NM_014901	exon3	c.C241T	p.R81X	GCATTCGGGGGCT	.	225	10	107	0	.	34	32	2	0	0
PROP1	5626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177420005	177420005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PROP1-90	NM_006261	exon3	c.G386A	p.R129H	AGTGAGCGCTCTT	.	141	49	101	0	.	0	0	0	0	0
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178567010	178567010	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAMTS2-228	NM_014244	exon11	c.G1656A	p.W552X	TGTCAGCCAGATG	.	281	147	187	0	.	0	0	0	0	0
RIOK1	83732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7393387	7393387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RIOK1-336	NM_031480	exon2	c.C127T	p.L43F	GAAGACCTTCAAG	.	84	69	130	1	.	6	0	6	0	0
NEDD9	4739	broad.mit.edu	37	6	11192636	11192636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEDD9-226	NM_001142393	exon5	c.C605T	p.S202L	GGAACTGAAAACA	.	105	4	130	0	.	2	2	0	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12162023	12162023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HIVEP1-139	NM_002114	exon8	c.G6839A	p.R2280H	GGCAGCGTGCTGC	.	121	92	183	0	.	18	0	18	0	0
MYLIP	29116	broad.mit.edu	37	6	16145408	16145408	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYLIP-91	NM_013262	exon6	c.C1108T	p.Q370X	TGCCAGCAGACCC	.	174	5	242	0	.	2	2	0	0	0
ATXN1	6310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	16306908	16306908	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATXN1-93	NM_001128164	exon8	c.C2100T	p.P700P	ATCCACGGGCTGG	.	97	81	144	1	.	0	0	0	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327924	16327924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATXN1-93	NM_001128164	exon7	c.G618T	p.Q206H	CTGCTGCTGCTGC	.	47	4	20	0	.	2	2	0	0	0
PRL	5617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	22294740	22294740	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRL-90	NM_001163558	exon3	c.C102A	p.G34G	AGCCCCGCCGGGA	.	238	72	314	0	.	0	0	0	0	0
HFE	3077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26093089	26093089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HFE-90	NM_000410	exon4	c.C793A	p.Q265K	ACCTACCAGGGCT	.	286	74	439	2	.	1	1	0	0	0
BTN2A2	10385	hgsc.bcm.edu;bcgsc.ca	37	6	26384116	26384118	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BTN2A2-90	NM_181531	exon2	c.67_69del	p.23_23del	CTCCTCCTTCTCA	.	114	95	169	1	.	0	0	0	0	0
BAG6	7917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31615616	31615617	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAG6-154	NM_004639	exon7	c.557_558del	p.186_186del	GTAGGGGAGAGTC	.	17	10	34	0	.	0	0	0	0	0
VARS	7407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31747038	31747038	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VARS-93	NM_006295	exon29	c.C3432T	p.G1144G	CAGGGCGCCCGTG	.	65	59	36	0	.	94	8	82	4	0
EHMT2	10919	ucsc.edu;bcgsc.ca	37	6	31860337	31860337	+	Silent	SNP	T	T	C	rs535586	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EHMT2-91	NM_025256	exon7	c.A711G	p.S237S	CTCCTCTGACTAG	.	62	7	95	1	T|0.179;G|0.170	0	0	0	0	0
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32037421	32037421	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNXB-90	NM_019105	exon15	c.G5496A	p.P1832P	CAGGCCCGGCACG	.	85	7	80	0	.	0	0	0	0	0
ZBTB9	221504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33423520	33423522	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GAG	GAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZBTB9-90	NM_152735	exon2	c.643_645del	p.215_215del	GAAGAAGAGGAGG	.	61	16	79	0	.	0	0	0	0	0
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33638975	33638975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITPR3-1085	NM_002224	exon21	c.G2620A	p.G874S	TACTTCGGCTTCT	.	152	35	181	0	.	1	0	1	0	0
BRPF3	27154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36179103	36179103	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRPF3-92	NM_015695	exon7	c.G2248T	p.E750X	CTGCTGGAGAAAC	.	51	47	77	0	.	3	0	3	0	0
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40400435	40400435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRFN2-93	NM_020737	exon2	c.G418A	p.A140T	CATCTGCGATGCC	.	68	56	77	0	.	0	0	0	0	0
UBR2	23304	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42627467	42627467	+	Missense_Mutation	SNP	G	G	A	rs147922807	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBR2-94	NM_015255	exon30	c.G3316A	p.V1106I	CAATTCGTTACAT	.	110	88	142	0	G|0.999;A|0.001	13	0	13	0	0
RRP36	88745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42992729	42992729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RRP36-90	NM_033112	exon2	c.C137T	p.S46F	GCACATCTAACAT	.	71	26	101	0	.	0	0	0	0	0
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43230559	43230559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTBK1-353	NM_032538	exon13	c.G1457A	p.R486H	CCTCGCGCCAGGC	.	112	26	50	0	.	0	0	0	0	0
ABCC10	89845	broad.mit.edu;bcgsc.ca	37	6	43415084	43415084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC10-96	NM_001198934	exon17	c.G3643A	p.V1215I	GTGAGCGTCGAGC	.	59	4	91	1	.	13	13	0	0	0
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44144037	44144037	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CAPN11-136	NM_007058	exon9	c.C963A	p.P321P	GAATCCCTGGGGC	.	125	32	147	0	.	0	0	0	0	0
TINAG	27283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54185431	54185431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TINAG-93	NM_014464	exon2	c.G410T	p.C137F	AAAACTGCAACTC	.	27	17	47	0	.	0	0	0	0	0
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	64395054	64395054	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PHF3-229	NM_015153	exon3	c.C1431T	p.S477S	AAGTAGCGTTTCT	.	136	112	187	1	.	6	0	6	0	0
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70873275	70873275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL19A1-156	NM_001858	exon36	c.C2387T	p.A796V	CAGGAGCAAAAGG	.	82	61	108	0	.	0	0	0	0	0
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109249377	109249377	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARMC2-68	NM_032131	exon11	c.G1437A	p.T479T	CTGCACGGCAATG	.	117	59	211	0	.	1	1	0	0	0
SESN1	27244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109308793	109308793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SESN1-227	NM_014454	exon10	c.C1610T	p.A537V	AGTTCTGCTTGCA	.	50	32	62	0	.	6	2	4	0	0
GPR6	2830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110300812	110300812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR6-90	NM_005284	exon1	c.G497A	p.R166H	TGGACCGCTACCT	.	75	60	102	0	.	0	0	0	0	0
C6orf170	221322	broad.mit.edu;bcgsc.ca	37	6	121655474	121655474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C6orf170-92	NM_152730	exon1	c.T103G	p.C35G	CGGCACACTCCAG	.	312	21	357	1	.	0	0	0	0	0
MED23	9439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	131944491	131944491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MED23-24	NM_015979	exon5	c.G396T	p.K132N	ATATACCTTGTAA	.	20	6	30	0	.	0	0	0	0	0
TCF21	6943	broad.mit.edu;bcgsc.ca	37	6	134210849	134210849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TCF21-90	NM_003206	exon1	c.C314T	p.T105I	AGACCACCCTGCC	.	181	9	192	1	.	1	1	0	0	0
NHSL1	57224	broad.mit.edu;bcgsc.ca	37	6	138817392	138817392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NHSL1-68	NM_020464	exon2	c.C319T	p.R107C	CTTGGCGGTGCAG	.	95	6	129	0	.	0	0	0	0	0
PLAGL1	5325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	144269185	144269185	+	Missense_Mutation	SNP	C	C	T	rs201696236		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLAGL1-91	NM_001080953	exon6	c.G89A	p.R30Q	TACGGCCGCTCCC	.	272	232	310	1	.	0	0	0	0	0
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158349722	158349722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SNX9-226	NM_016224	exon12	c.C1276T	p.R426C	TGGAAGCGCTGCA	.	55	48	80	0	.	0	0	0	0	0
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159660704	159660704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FNDC1-138	NM_032532	exon14	c.C4336T	p.P1446S	ACCCATCCCCCTA	.	51	31	87	0	.	0	0	0	0	0
SLC22A3	6581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160864677	160864677	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC22A3-517	NM_021977	exon9	c.G1413A	p.S471S	AGTTTCGCTCTGT	.	42	35	55	0	.	19	0	19	0	0
PLG	5340	broad.mit.edu;bcgsc.ca	37	6	161139344	161139344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLG-94	NM_000301	exon8	c.C806A	p.S269Y	CATCTTCTGGTCC	.	129	6	182	0	.	0	0	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	5	5	0	0	G|0.796;C|0.204	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	25	20	5	0	T|0.654;G|0.346	0	0	0	0	0
CYP2W1	54905	hgsc.bcm.edu	37	7	1027032	1027032	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYP2W1-90	NM_017781	exon7	c.C1008G	p.P336P	GACTCCCCGGCTG	.	45	20	7	0	.	6	0	6	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	13	6	0	0	G|0.456;C|0.544	3	1	2	0	0
USP42	84132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	6193968	6193968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP42-659	NM_032172	exon15	c.C2783T	p.A928V	ACGCCGCGGCGCC	.	116	73	34	0	.	4	1	3	0	0
GRID2IP	392862	broad.mit.edu;bcgsc.ca	37	7	6550278	6550278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001145118	exon10	c.G1615A	p.D539N	TGCCGTCGCCTGC	.	81	38	75	2	.	0	0	0	0	0
SP8	221833	broad.mit.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	46	10	18	0	.	0	0	0	0	0
HOXA3	3200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	27147667	27147667	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOXA3-153	NM_030661	exon3	c.1199delG	p.G400fs	CCGGCACCCCCAT	.	76	37	23	0	.	0	0	0	0	0
PRR15	222171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	29606205	29606205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR15-46	NM_175887	exon2	c.G260A	p.R87H	GCCGCCGCAATTT	.	88	14	57	0	.	14	11	3	0	0
NOD1	10392	hgsc.bcm.edu;bcgsc.ca	37	7	30491510	30491510	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOD1-229	NM_006092	exon6	c.1523delG	p.G508fs	TGGTCACCCCCGG	.	94	40	92	1	.	0	0	0	0	0
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45014805	45014805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO1G-137	NM_033054	exon5	c.G586A	p.V196M	CACCCACGTGCTG	.	179	80	161	0	.	0	0	0	0	0
TNS3	64759	broad.mit.edu	37	7	47331569	47331569	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNS3-94	NM_022748	exon27	c.G3912C	p.L1304L	CTTCAACAGCTCA	.	88	3	67	0	.	1	1	0	0	0
EGFR	1956	broad.mit.edu;bcgsc.ca	37	7	55273030	55273030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EGFR-44910	NM_005228	exon28	c.C3353T	p.A1118V	ACCCCGCGCCCAG	.	162	6	119	0	.	3	2	1	0	0
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	73008706	73008709	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAAA	CAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLXIPL-91	NM_032951	exon16	c.2335_2338del	p.779_780del	AGGACTCAAACAG	.	61	29	61	0	.	0	0	0	0	0
GTF2IRD2B	389524	bcgsc.ca	37	7	74538966	74538966	+	Missense_Mutation	SNP	C	C	T	rs2539083	bycluster;byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GTF2IRD2B-45	NM_001003795	exon5	c.C388T	p.P130S	ATGGTGCCTGTTC	.	1350	30	1243	1	C|0.500;T|0.500	9	9	0	0	0
DTX2	113878	broad.mit.edu	37	7	76111983	76111983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DTX2-524	NM_001102596	exon2	c.G427A	p.V143M	CAGCTCGTGGACT	.	506	14	362	0	.	3	3	0	0	0
CCDC146	57639	broad.mit.edu	37	7	76888378	76888378	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC146-70	NM_020879	exon7	c.751delA	p.K251fs	ACACGCAAAAAAG	.	104	10	95	0	.	0	0	0	0	0
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu	37	7	86556094	86556096	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1324L-97	NM_001142749	exon9	c.1226_1228del	p.409_410del	GATGGCAAGAAGA	.	154	12	86	0	.	0	0	0	0	0
DBF4	10926	hgsc.bcm.edu	37	7	87514295	87514295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DBF4-253	NM_006716	exon3	c.G221A	p.R74Q	TCTAGCGAGTTGA	.	70	4	43	0	.	0	0	0	0	0
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	88964603	88964603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF804B-101	NM_181646	exon4	c.A2307G	p.I769M	TGATATAACAAAG	.	273	22	215	0	.	0	0	0	0	0
AKAP9	10142	broad.mit.edu	37	7	91659279	91659279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AKAP9-755	NM_005751	exon15	c.4219delA	p.K1407fs	TGTGTGAAAAAGA	.	186	9	106	0	.	0	0	0	0	0
AP4M1	9179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99701292	99701292	+	Missense_Mutation	SNP	G	G	A	rs201065427		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AP4M1-90	NM_004722	exon6	c.G520A	p.V174I	CGCCCCGTCCTGT	.	96	44	90	0	G|0.999;A|0.000	20	6	14	0	0
NYAP1	222950	broad.mit.edu	37	7	100086933	100086933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_173564	exon4	c.G1589T	p.C530F	GCGGCTGCCTGGC	.	82	8	22	0	.	1	1	0	0	0
AP1S1	1174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100802405	100802405	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AP1S1-226	NM_001283	exon4	c.357delG	p.M119fs	TTTGATGGGGGGG	.	162	76	133	0	.	0	0	0	0	0
PLOD3	8985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100853911	100853911	+	Missense_Mutation	SNP	G	G	A	rs75592752	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLOD3-92	NM_001084	exon13	c.C1402T	p.R468W	CACCCCGGATCAC	.	132	57	114	0	A|0.000;C|0.010;G|0.990	197	82	115	0	0
PRKRIP1	79706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102038071	102038071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRKRIP1-91	NM_024653	exon2	c.A131G	p.K44R	AGGACAAAGCAGT	.	169	83	138	0	.	2	2	0	0	0
ALKBH4	54784	bcgsc.ca	37	7	102098305	102098305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALKBH4-90	NM_017621	exon3	c.C445T	p.R149W	CGGGCCGGAAGCC	.	76	23	38	1	.	14	8	6	0	0
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	103006564	103006564	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSMC2-90	NM_002803	exon9	c.798delA	p.T266fs	CAGAACAAAAAAA	.	78	34	52	0	.	0	0	0	0	0
MLL5	55904	ucsc.edu;bcgsc.ca	37	7	104717504	104717504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLL5-93	NM_018682	exon9	c.A863G	p.N288S	AAGCAAATAACAA	.	350	151	222	3	.	14	5	9	0	0
SRPK2	6733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	104767476	104767479	+	Frame_Shift_Del	DEL	CAAA	CAAA	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAAA	CAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRPK2-805	NM_182692	exon14	c.1783_1786del	p.595_596del	GTGGTTCAAACAA	.	166	62	161	0	.	0	0	0	0	0
BCAP29	55973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107253834	107253834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BCAP29-136	NM_018844	exon7	c.C647T	p.S216L	GACTTTCGAAAGA	.	232	101	208	1	.	72	39	33	0	0
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107820770	107820770	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NRCAM-156	NM_001037132	exon22	c.G2748A	p.P916P	TAGCCCCGGCAAC	.	187	100	129	0	.	35	24	11	0	0
WNT16	51384	broad.mit.edu;bcgsc.ca	37	7	120971850	120971850	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WNT16-1011	NM_057168	exon3	c.C465T	p.N155N	GCAGAACGGCGGC	.	245	11	175	0	.	0	0	0	0	0
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128843243	128843243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMO-2451	NM_005631	exon2	c.G350A	p.R117H	CCCCCCGCTGCTG	.	120	55	79	0	.	1	0	1	0	0
TMEM209	84928	broad.mit.edu;bcgsc.ca	37	7	129832631	129832631	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMEM209-92	NM_032842	exon6	c.G606A	p.P202P	AGGGTACGGAGAA	.	207	8	149	0	.	18	18	0	0	0
AKR1D1	6718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	137761290	137761290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AKR1D1-91	NM_001190907	exon1	c.G26A	p.R9H	GTCACCGCATACC	.	165	87	148	0	.	0	0	0	0	0
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139796487	139796487	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JHDM1D-91	NM_030647	exon17	c.A2242T	p.T748S	AACACGTGGAATA	.	192	75	155	0	.	1	1	0	0	0
ZYX	7791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143087734	143087734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZYX-90	NM_003461	exon10	c.G1678A	p.V560M	GGTCACGTGCTCT	.	180	17	165	0	.	198	174	24	0	0
OR2A14	135941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143826996	143826996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR2A14-90	NM_001001659	exon1	c.G791A	p.R264H	AGTCCCGCCATCC	.	224	85	187	1	.	0	0	0	0	0
OR2A7	401427	hgsc.bcm.edu;broad.mit.edu	37	7	143955878	143955878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR2A7-23	NM_001005328	exon1	c.C844A	p.P282T	GCATGGGATTAAA	.	433	23	469	0	.	1	1	0	0	0
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	144096190	144096190	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOBOX-69	NM_001080413	exon8	c.1322delC	p.P441fs	AAGAGTGGGGGGG	.	89	49	69	0	.	0	0	0	0	0
SSPO	23145	broad.mit.edu	37	7	149474770	149474770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_198455	exon5	c.G569A	p.R190H	ACCAGCGTCCCTC	.	73	3	37	0	.	0	0	0	0	0
NOS3	4846	hgsc.bcm.edu;mdanderson.org	37	7	150706627	150706627	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOS3-1011	NM_000603	exon20	c.G2466A	p.A822A	GCCGGCGCCCACT	.	85	41	10	0	.	18	17	1	0	0
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150920935	150920935	+	Missense_Mutation	SNP	G	G	A	rs138611892		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCF2-90	NM_005692	exon5	c.C551T	p.A184V	CACTCCGCTGTGG	.	95	40	67	0	G|1.000;A|0.000	0	0	0	0	0
RNF32	140545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	156469120	156469120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF32-226	NM_001184996	exon9	c.G860A	p.R287H	CTCTGCGCCGGGA	.	176	94	57	0	.	9	3	6	0	0
ANGPT2	285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6371316	6371316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ANGPT2-91	NM_001147	exon7	c.C1082T	p.S361L	AGTTGCGAAACAA	.	56	45	86	0	.	7	7	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	6	6	0	0	G|0.907;A|0.093	2	0	2	0	0
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22447189	22447189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PDLIM2-90	NM_021630	exon8	c.G1448A	p.R483Q	AGGGACGGGCGGC	.	183	152	295	2	.	30	1	29	0	0
CDCA2	157313	bcgsc.ca	37	8	25365209	25365209	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDCA2-90	NM_152562	exon15	c.G3027T	p.L1009L	CTCTCTGACTGCC	.	60	4	76	0	.	7	7	0	0	0
CHRNA2	1135	bcgsc.ca	37	8	27328511	27328511	+	Missense_Mutation	SNP	G	G	A	rs2472553	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHRNA2-91	NM_000742	exon2	c.C65T	p.T22I	GCTGGGGTCAGAA	.	209	8	245	0	G|0.819;A|0.181	0	0	0	0	0
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35608159	35608159	+	Silent	SNP	G	G	A	rs145027081	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UNC5D-96	NM_080872	exon13	c.G1995A	p.A665A	CTTTGCGTGTCAT	.	186	145	248	0	G|1.000;C|0.000	0	0	0	0	0
BRF2	55290	broad.mit.edu;bcgsc.ca	37	8	37702689	37702689	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRF2-90	NM_018310	exon4	c.C579T	p.Y193Y	TTCCACGTATTTG	.	147	8	234	1	.	10	10	0	0	0
BAG4	9530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38067995	38067995	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAG4-228	NM_004874	exon5	c.1358delA	p.E453fs	AATTAGAAAAAAA	.	54	29	74	0	.	0	0	0	0	0
WHSC1L1	54904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38162210	38162210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WHSC1L1-658	NM_023034	exon14	c.G2506A	p.G836R	TGCTTCCGGCCGC	.	57	45	76	0	.	1	0	1	0	0
HOOK3	84376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42823193	42823193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOOK3-154	NM_032410	exon11	c.G958C	p.V320L	GGTCAAGTAGAAT	.	153	27	258	0	.	4	4	0	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	61743055	61743055	+	Missense_Mutation	SNP	G	G	A	rs190548814		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHD7-141	NM_017780	exon15	c.G3697A	p.G1233S	AAAGGCGGTGGTC	.	115	33	186	0	G|0.999;A|0.001	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	8	8	0	0	T|0.935;A|0.065	0	0	0	0	0
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67049359	67049359	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM55-230	NM_184086	exon4	c.C537T	p.L179L	CATCCTCGTGGGC	.	92	19	127	0	.	0	0	0	0	0
CA3	761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	86354416	86354416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CA3-514	NM_005181	exon3	c.C347T	p.A116V	ATGCAGCGGAGGT	.	114	15	91	0	.	0	0	0	0	0
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99146235	99146235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POP1-154	NM_001145860	exon6	c.C794T	p.A265V	TAAAGGCGCTTTC	.	140	66	124	0	.	1	0	1	0	0
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBR5-761	NM_015902	exon45	c.6360delA	p.K2120fs	CCCTTCTTTTTTT	.	55	25	45	0	.	0	0	0	0	0
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	103297999	103297999	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBR5-761	NM_015902	exon39	c.G5226A	p.A1742A	CAAACCCGCTGAA	.	75	33	63	0	.	2	0	2	0	0
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106813889	106813889	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZFPM2-139	NM_012082	exon8	c.C1579T	p.R527X	CATCGGCGACTGA	.	54	27	35	0	.	0	0	0	0	0
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	116616259	116616259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRPS1-229	NM_014112	exon4	c.A1937G	p.Y646C	CTTTCATAGTGAA	.	268	15	168	0	.	2	2	0	0	0
COLEC10	10584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	120101975	120101975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COLEC10-229	NM_006438	exon2	c.C205T	p.R69C	GTGGGACGCATGG	.	270	18	212	0	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	14	14	0	0	.	0	0	0	0	0
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121458716	121458716	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MTBP-228	NM_022045	exon2	c.T162C	p.I54I	AAGCATTAGTGCT	.	74	10	55	0	.	2	2	0	0	0
FER1L6	654463	ucsc.edu;bcgsc.ca	37	8	125015418	125015418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FER1L6-100	NM_001039112	exon13	c.A1531G	p.N511D	TTTGGAAACCTGA	.	408	199	343	2	.	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133913766	133913766	+	Missense_Mutation	SNP	C	C	T	rs201453011		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TG-145	NM_003235	exon16	c.C3602T	p.T1201M	CTGGGACGCGCGT	.	210	106	196	0	C|0.999;T|0.001	0	0	0	0	0
FAM135B	51059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139164439	139164439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM135B-31	NM_015912	exon13	c.G2279A	p.R760Q	ACCTCCCGCTCAT	.	62	15	72	1	.	0	0	0	0	0
TRAPPC9	83696	broad.mit.edu;bcgsc.ca	37	8	140898200	140898200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRAPPC9-228	NM_031466	exon21	c.G3272A	p.R1091H	CCACTGCGCTTCA	.	331	14	472	0	.	0	0	0	0	0
CYP11B1	1584	broad.mit.edu	37	8	143960582	143960582	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYP11B1-94	NM_000497	exon2	c.C261G	p.G87G	CACCATGCCTGCT	.	115	4	197	0	.	4	4	0	0	0
GRINA	2907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145066998	145066998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRINA-90	NM_001009184	exon7	c.G1105A	p.A369T	GGCCGCGCCAAGG	.	115	89	144	1	.	407	3	403	1	0
ZNF251	90987	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145947714	145947714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF251-68	NM_138367	exon5	c.G1331A	p.R444Q	GAACTCCGACGAA	.	70	63	97	1	.	9	1	8	0	0
WASH1	100287171	bcgsc.ca	37	9	14909	14909	+	Missense_Mutation	SNP	C	C	G	rs2974795	bycluster;by2hit2allele;byhapmap	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_182905	exon11	c.G1296C	p.E432D	GGGCCCCTCACCA	.	457	40	611	1	.	230	230	0	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214719	214719	+	Silent	SNP	C	C	T	rs115610637	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C9orf66-514	NM_152569	exon1	c.G678A	p.A226A	CAGTTCCGCGCTG	.	6	4	0	0	C|0.983;T|0.017	0	0	0	0	0
SMARCA2	6595	hgsc.bcm.edu	37	9	2039777	2039791	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-	rs113070757	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMARCA2-653	NM_139045	exon4	c.667_681del	p.223_227del	CAGCAACAGCAGC	.	141	48	89	0	-|0.500;CAG|0.500	0	0	0	0	0
RFX3	5991	broad.mit.edu;bcgsc.ca	37	9	3263055	3263055	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RFX3-93	NM_134428	exon14	c.T1485G	p.T495T	TCGCAGAGTCTGG	.	225	9	206	0	.	1	1	0	0	0
MPDZ	8777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	13119542	13119542	+	Missense_Mutation	SNP	C	C	T	rs202112833		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MPDZ-231	NM_003829	exon39	c.G5338A	p.V1780I	TACGAACGTCTTC	.	132	61	117	1	.	10	5	5	0	0
FOCAD	54914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20881923	20881923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_017794	exon22	c.C2371T	p.R791C	ATGCCTCGTGGGA	.	80	42	58	0	.	13	4	9	0	0
MTAP	4507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	21854738	21854738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MTAP-651	NM_002451	exon6	c.C559T	p.R187C	ATGTTCCGCACCT	.	217	42	142	3	.	17	14	3	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	33	16	0	0	G|0.807;C|0.193	12	8	4	0	0
CAAP1	79886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	26842344	26842344	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_024828	exon6	c.G1041A	p.A347A	TTTAATCGCTCTT	.	103	48	93	0	.	13	7	6	0	0
SMU1	55234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33056173	33056173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMU1-91	NM_018225	exon9	c.G1060A	p.E354K	TTGCTTCGTTAAC	.	85	41	71	0	.	68	39	29	0	0
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	34306345	34306345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIF24-22	NM_194313	exon3	c.C718T	p.R240C	CTCCACGACGTAC	.	123	8	86	0	.	0	0	0	0	0
UNC13B	10497	broad.mit.edu	37	9	35399222	35399222	+	Missense_Mutation	SNP	C	C	T	rs140628524		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UNC13B-157	NM_006377	exon33	c.C3892T	p.R1298C	CTCTGGCGCGTGG	.	473	8	393	1	C|1.000;T|0.000	31	27	3	0	1
RUSC2	9853	hgsc.bcm.edu;bcgsc.ca	37	9	35560687	35560688	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RUSC2-91	NM_014806	exon10	c.4050_4051del	p.1350_1351del	CCCTGACTCTGTG	.	69	31	53	1	.	0	0	0	0	0
CEP78	84131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	80854984	80854984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CEP78-69	NM_001098802	exon2	c.G299A	p.R100K	CGATAAGATACAA	.	105	9	91	0	.	3	3	0	0	0
DAPK1	1612	broad.mit.edu;bcgsc.ca	37	9	90321154	90321154	+	Silent	SNP	G	G	A	rs193150601	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAPK1-359	NM_004938	exon26	c.G3168A	p.A1056A	ACGGGCGCTGCAC	.	327	15	160	0	G|0.999;A|0.000	2	2	0	0	0
SPTLC1	10558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	94794822	94794822	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPTLC1-154	NM_006415	exon15	c.G1347A	p.T449T	TTCCACCGTGACC	.	193	81	193	1	.	106	49	57	0	0
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	98231105	98231105	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PTCH1-3532	NM_000264	exon14	c.2178delC	p.P726fs	CGTACAGGGGGGC	.	184	76	176	0	.	0	0	0	0	0
MSANTD3	91283	broad.mit.edu	37	9	103204598	103204598	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001198805	exon2	c.G378A	p.P126P	CCCCCCGGAGGAG	.	77	5	40	0	.	19	19	0	0	0
FRRS1L	23732	broad.mit.edu	37	9	111909469	111909469	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_014334	exon3	c.A477G	p.R159R	GCCATATCTAGAA	.	146	4	123	0	.	0	0	0	0	0
MUSK	4593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113562990	113562990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MUSK-1379	NM_005592	exon14	c.C2332T	p.R778C	TATAACCGCTACA	.	209	90	169	1	.	0	0	0	0	0
ASTN2	23245	broad.mit.edu	37	9	119625887	119625887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASTN2-161	NM_014010	exon10	c.G1862A	p.R621Q	ACCTGCCGGTCAG	.	154	5	138	0	.	0	0	0	0	0
DBC1	1620	ucsc.edu;bcgsc.ca	37	9	121929614	121929614	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DBC1-582	NM_014618	exon8	c.G2034A	p.Q678Q	GTAGGACTGGTTG	.	269	97	228	3	.	1	1	0	0	0
PSMD5	5711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123586958	123586958	+	Missense_Mutation	SNP	C	C	T	rs149552567		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSMD5-90	NM_005047	exon7	c.G820A	p.V274M	ACTTCACGAATCC	.	64	33	63	0	C|1.000;T|0.000	0	0	0	0	0
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	124519406	124519406	+	Silent	SNP	C	C	T	rs35510547	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAB2IP-91	NM_032552	exon4	c.C393T	p.P131P	CAAGCCCGTGCAC	.	376	165	330	1	C|0.994;G|0.006	0	0	0	0	0
HSPA5	3309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	127998973	127998973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HSPA5-230	NM_005347	exon8	c.G1863T	p.K621N	CAGTTCCTTCTTC	.	140	8	122	0	.	593	570	22	0	1
TTC16	158248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130479967	130479967	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTC16-90	NM_144965	exon4	c.C342T	p.A114A	CTCGGCCGCCCAG	.	197	90	190	1	.	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	6	6	0	0	A|0.235;G|0.765	2	0	2	0	0
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134340407	134340407	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRRC2B-24	NM_013318	exon11	c.C1662A	p.P554P	AGTGCCCTGGTCT	.	293	18	265	0	.	9	9	0	0	0
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137623934	137623934	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL5A1-524	NM_000093	exon9	c.C1350T	p.G450G	TCGGGGCGAGAAA	.	177	68	160	1	.	5	3	2	0	0
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137716657	137716657	+	Missense_Mutation	SNP	G	G	A	rs199998065		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL5A1-524	NM_000093	exon62	c.G4910A	p.R1637H	CCGCCCGCACCTG	.	173	85	114	1	G|0.999;A|0.001	12	7	5	0	0
RNF208	727800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140115250	140115250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_031297	exon1	c.G415A	p.E139K	GGGGCTCGCCTGC	.	104	18	21	0	.	15	12	3	0	0
RNF208	727800	hgsc.bcm.edu;broad.mit.edu	37	9	140115251	140115251	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_031297	exon1	c.C414T	p.G138G	GGGCTCGCCTGCC	.	100	10	18	0	.	22	13	7	2	0
EXD3	54932	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140243597	140243597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EXD3-90	NM_017820	exon16	c.C1795A	p.L599M	TCTGCAGGCCGGG	.	91	44	56	1	.	0	0	0	0	0
EXD3	54932	broad.mit.edu	37	9	140262422	140262422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EXD3-90	NM_017820	exon6	c.C482T	p.T161M	TTCAACGTCGCGC	.	113	5	119	0	.	1	1	0	0	0
ARRDC1	92714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140508572	140508572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARRDC1-90	NM_152285	exon5	c.G524A	p.R175H	ATCTCCGCGGCTA	.	192	15	156	0	.	99	92	7	0	0
EHMT1	79813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140676778	140676778	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EHMT1-154	NM_001145527	exon15	c.C2311T	p.Q771X	GAGCACCAGAATA	.	95	43	87	0	.	24	18	6	0	0
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	1546767	1546767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASMTL-62	NM_004192	exon7	c.G757A	p.A253T	TGCCCGCGTCCCT	.	98	82	25	0	.	55	3	52	0	0
PNPLA4	8228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	7890071	7890071	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PNPLA4-130	NM_004650	exon3	c.C249T	p.P83P	ATAACCGGGCGTT	.	242	202	263	1	.	37	1	36	0	0
KAL1	3730	broad.mit.edu;bcgsc.ca	37	X	8538724	8538724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KAL1-134	NM_000216	exon7	c.C878T	p.P293L	TTAGCCGGTGCTG	.	237	9	321	0	.	0	0	0	0	0
KAL1	3730	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8553424	8553424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KAL1-134	NM_000216	exon6	c.G740A	p.R247Q	TGAACTCGCTCGT	.	144	112	164	2	.	0	0	0	0	0
MAP3K15	389840	broad.mit.edu	37	X	19390842	19390842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAP3K15-335	NM_001001671	exon22	c.G3037A	p.A1013T	GGATGGCACGGCG	.	229	6	323	0	.	19	18	1	0	0
MAGEB1	4112	broad.mit.edu	37	X	30268991	30268991	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAGEB1-130	NM_177415	exon3	c.G381A	p.E127E	GAGAGAGCCCATT	.	141	4	189	0	.	0	0	0	0	0
TSPAN7	7102	hgsc.bcm.edu;bcgsc.ca	37	X	38535027	38535027	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSPAN7-63	NM_004615	exon5	c.510delC	p.I170fs	TGGCATCCCCCCC	.	170	136	206	1	.	0	0	0	0	0
MED14	9282	broad.mit.edu;bcgsc.ca	37	X	40518765	40518765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MED14-289	NM_004229	exon27	c.C3779T	p.T1260M	TGAAGCGTTTGGT	.	109	5	109	0	.	32	28	4	0	0
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	41075161	41075161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP9X-563	NM_001039591	exon35	c.G5341A	p.V1781I	GATACCGTAAAGC	.	119	9	143	0	.	1	1	0	0	0
SSX5	6758	ucsc.edu;bcgsc.ca	37	X	48053647	48053647	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SSX5-90	NM_021015	exon5	c.C321A	p.T107T	TGGGAGGGTGGCC	.	786	631	1273	4	.	0	0	0	0	0
KCND1	3750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48826543	48826543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCND1-133	NM_004979	exon1	c.G136A	p.V46M	CGCTCACGTTCAC	.	126	109	225	1	.	2	0	2	0	0
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	50350688	50350690	+	In_Frame_Del	DEL	CCT	CCT	-	rs143151534	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CCT	CCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SHROOM4-131	NM_020717	exon6	c.3452_3454del	p.1151_1152del	CCTCTGCCTCCTC	.	92	65	106	0	-|0.701;TCC|0.299	0	0	0	0	0
HEPH	9843	broad.mit.edu;bcgsc.ca	37	X	65486456	65486456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HEPH-135	NM_138737	exon21	c.G3581A	p.R1194Q	AGCTACGACGCAA	.	240	10	327	0	.	1	1	0	0	0
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69774510	69774510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEX11-178	NM_001003811	exon27	c.A2326G	p.T776A	CAATTGTTTCAAA	.	161	32	246	0	.	0	0	0	0	0
MED12	9968	ucsc.edu;bcgsc.ca	37	X	70356163	70356163	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MED12-272	NM_005120	exon37	c.G5058A	p.S1686S	GATCTCGCCCTGG	.	175	143	239	2	.	45	0	45	0	0
CXCR3	2833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	70836820	70836820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CXCR3-660	NM_001142797	exon2	c.G643A	p.V215M	GGGTCACGCGGGC	.	171	15	198	0	.	6	6	0	0	0
ZDHHC15	158866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	74636938	74636938	+	Silent	SNP	G	G	A	rs192529997		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZDHHC15-132	NM_144969	exon10	c.C951T	p.N317N	ATCCTCGTTGTCT	.	100	76	200	0	G|0.998;A|0.002	1	0	1	0	0
ATRX	546	hgsc.bcm.edu	37	X	76938582	76938585	+	Frame_Shift_Del	DEL	TGAT	TGAT	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TGAT	TGAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATRX-248	NM_000489	exon9	c.2163_2166del	p.721_722del	AGTCTCTGATTGC	.	28	22	39	2	.	0	0	0	0	0
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	84510411	84510413	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF711-134	NM_021998	exon4	c.226_228del	p.76_76del	CCTGATATCATCA	.	285	47	396	0	.	0	0	0	0	0
PCDH11X	27328	hgsc.bcm.edu;bcgsc.ca	37	X	91132408	91132408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDH11X-193	NM_001168363	exon2	c.C1169T	p.A390V	AGGATGCGGACCA	.	313	261	413	2	.	0	0	0	0	0
SRPX2	27286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99905848	99905848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRPX2-132	NM_014467	exon3	c.C149T	p.A50V	CTCCTGCCCTGGA	.	89	79	118	0	.	0	0	0	0	0
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	109695052	109695052	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RGAG1-132	NM_020769	exon3	c.G1207C	p.V403L	CCACCAGTAAGAG	.	98	6	177	0	.	0	0	0	0	0
SLITRK4	139065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	142717897	142717897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLITRK4-193	NM_001184750	exon2	c.C1028T	p.P343L	GGTGCCGGGCAAG	.	212	177	272	1	.	0	0	0	0	0
FMR1NB	158521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147090160	147090160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMR1NB-131	NM_152578	exon4	c.G561T	p.M187I	GCAAATGTTTGGG	.	90	75	129	0	.	0	0	0	0	0
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	147733548	147733548	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AFF2-135	NM_002025	exon2	c.76delA	p.K26fs	GCACTTAAAAAAA	.	277	157	315	0	.	0	0	0	0	0
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148797592	148797592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAGEA11-132	NM_005366	exon5	c.C446T	p.A149V	AGGCTGCCTTCTT	.	198	163	301	0	.	0	0	0	0	0
CD99L2	83692	broad.mit.edu	37	X	149999704	149999704	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CD99L2-195	NM_001242614	exon2	c.C130T	p.Q44X	ACTCACGCTTTAC	.	25	3	47	0	.	0	0	0	0	0
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152815531	152815531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP2B3-109	NM_001001344	exon10	c.G1610A	p.R537H	TCCCACGCCAGGT	.	102	86	151	0	.	25	0	24	1	0
GDI1	2664	broad.mit.edu;bcgsc.ca	37	X	153669455	153669455	+	Silent	SNP	C	C	A	rs201655775	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GDI1-90	NM_001493	exon7	c.C732A	p.I244I	TGCCATCTATGGG	.	66	9	125	0	.	6	4	2	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu	37	11	64572092	64572093	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MEN1-3017	NM_130803	exon10	c.1562_1563insC	p.R521fs	GGCTTCCGGGGGG	.	33	16	13	0	.	0	0	0	0	0
NEUROD4	58158	hgsc.bcm.edu;broad.mit.edu	37	12	55421127	55421128	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEUROD4-94	NM_021191	exon2	c.904_905insC	p.T302fs	GCTGGTACCCCCC	.	161	15	118	0	.	0	0	0	0	0
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	77222254	77222255	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_015336	exon10	c.1125_1126insT	p.F375fs	GTGGTTCTTCTGG	.	108	41	114	0	.	0	0	0	0	0
ZFYVE19	84936	broad.mit.edu;bcgsc.ca	37	15	41106184	41106185	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZFYVE19-91	NM_001077268	exon10	c.1253_1254insC	p.L418fs	AGGAGCTCCCCTG	.	72	8	156	0	.	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38609984	38609985	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SIPA1L3-91	NM_015073	exon9	c.2330_2331insC	p.G777fs	CTTTCGGCCCCCC	.	85	35	86	0	.	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50098807	50098808	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR12-70	NM_020719	exon4	c.1215_1216insC	p.R405fs	CACCAGGCCCCCC	.	56	18	43	0	.	0	0	0	0	0
ASXL2	55252	hgsc.bcm.edu;bcgsc.ca	37	2	25966872	25966873	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASXL2-23	NM_018263	exon12	c.2334_2335insC	p.P778fs	AGGCACTGGGGGG	.	60	43	69	1	.	0	0	0	0	0
TNS1	7145	hgsc.bcm.edu	37	2	218712886	218712887	+	In_Frame_Ins	INS	-	-	GCT	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNS1-156	NM_022648	exon17	c.1979_1980insAGC	p.P660delinsQP	GGGCGAGGCTGCT	.	66	37	35	0	.	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	84	7	34	0	.	0	0	0	0	0
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	79366741	79366742	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FRAS1-68	NM_025074	exon42	c.5731_5732insA	p.E1911fs	GTCCTGGAAAACT	.	108	13	125	0	.	0	0	0	0	0
DAB2	1601	hgsc.bcm.edu;bcgsc.ca	37	5	39390566	39390567	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAB2-227	NM_001343	exon5	c.442_443insT	p.A148fs	TTATGGCAAAAAA	.	122	37	93	1	.	0	0	0	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263345	140263346	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHA13-75	NM_031865	exon1	c.1492_1493insG	p.R498fs	GAGCGGCGGGTGG	.	513	9	96	0	.	0	0	0	0	0
TRIM41	90933	hgsc.bcm.edu;bcgsc.ca	37	5	180651181	180651182	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM41-226	NM_033549	exon1	c.182_183insGGA	p.R61delinsRE	TAGATCGGGAGGA	.	208	54	161	0	.	0	0	0	0	0
IQCE	23288	hgsc.bcm.edu;broad.mit.edu	37	7	2641074	2641075	+	Splice_Site	INS	-	-	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IQCE-226	NM_001100390	exon17	c.1561-1->A	.	TTTCCAGAAAAAA	.	82	13	52	0	.	0	0	0	0	0
POM121	9883	broad.mit.edu	37	7	72413723	72413724	+	In_Frame_Ins	INS	-	-	CTC	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POM121-226	NM_172020	exon11	c.2396_2397insCTC	p.F799delinsFS	CTGTCTTCTTCGG	.	282	9	119	0	.	0	0	0	0	0
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24167472	24167473	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAM28-228	NM_021777	exon3	c.216_217insA	p.L72fs	TTATTTGAAAAAA	.	129	92	151	0	.	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	7	0	2	0	T|0.470;C|0.530	0	0	0	0	0
