Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1016412	1016414	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_005961	exon31	c.6388_6390del	p.2130_2130del	GAAAATGAGGAGG	.	43	14	27	0	.	.
MAP7D2	256714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	20030593	20030593	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001168465	exon15	c.1947delT	p.T649fs	GGATAAGTTTCTG	.	72	23	70	0	.	.
ONECUT2	9480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	55103945	55103947	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_004852	exon1	c.996_998del	p.332_333del	GAAGAAATCAACA	.	28	15	38	0	.	.
ENC1	8507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	73931139	73931139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001256575	exon3	c.1173delT	p.Y391X	ACCACATACAGGC	.	19	12	20	0	.	.
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10434992	10434992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_015074	exon45	c.G5039A	p.R1680H	TCGTCCGTCGGCC	.	53	27	63	0	.	.
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10385609	10385609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_000201	exon2	c.A236G	p.Y79C	AGGTGTATGAACT	.	33	8	29	0	.	.
PRUNE2	158471	hgsc.bcm.edu	37	9	79270373	79270373	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PRUNE2_ENST00000376718,colon,carcinoma,0,4	PRUNE2_ENST00000376718	NM_015225	exon10	c.C8322A	p.G2774G	CAGCACGCCCTCT	.	23	3	33	0	.	0
OR1S1	219959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57982413	57982413	+	Missense_Mutation	SNP	C	C	T	rs140365237	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	OR1S1,NS,carcinoma,-1,3	OR1S1	NM_001004458	exon1	c.C197T	p.T66M	TGGATACGTACCT	.	62	35	89	0	0.000	-1
MOV10	4343	hgsc.bcm.edu	37	1	113241378	113241378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020963	exon17	c.G2550T	p.E850D	CAGGGAGCTTCGA	.	24	3	27	0	.	.
SLC6A12	6539	hgsc.bcm.edu	37	12	307123	307123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SLC6A12,NS,carcinoma,0,1	SLC6A12	NM_001122848	exon9	c.G893A	p.C298Y	CCCTGGCAGATGG	.	34	2	34	0	.	0
ZKSCAN2	342357	hgsc.bcm.edu	37	16	25258433	25258433	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001012981	exon5	c.G1084T	p.E362X	GTGTTTCATAAAA	.	66	4	66	0	.	.
SKA3	221150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21742376	21742376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SKA3,NS,carcinoma,0,1	SKA3	NM_145061	exon4	c.G494A	p.R165Q	ATGTACCGCTCAA	.	58	18	60	0	.	0
RXRG	6258	hgsc.bcm.edu;bcgsc.ca	37	1	165414094	165414094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_006917	exon1	c.G37A	p.A13T	AGCCTGCGGGAAA	.	77	4	84	0	.	.
SUPT6H	6830	hgsc.bcm.edu	37	17	27001323	27001323	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SUPT6H,NS,carcinoma,0,1	SUPT6H	NM_003170	exon3	c.C132T	p.N44N	GGAGAACCTAGAT	.	40	2	59	0	.	0
PRCC	5546	hgsc.bcm.edu;bcgsc.ca	37	1	156756845	156756845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_005973	exon3	c.T962A	p.L321H	CCCCCCTTGAATT	.	65	4	36	0	.	.
SH3GL1	6455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	4362634	4362634	+	Silent	SNP	G	G	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_003025	exon8	c.C828G	p.P276P	GGTGCAGGGGAAG	.	42	24	42	0	.	.
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	28122525	28122525	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_153371	exon10	c.C2020T	p.Q674X	TCCTCTGCTCCTT	.	41	9	41	0	.	.
SMARCD2	6603	hgsc.bcm.edu	37	17	61914839	61914839	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001098426	exon2	c.G363A	p.V121V	CTGGGGCACAAGC	.	72	4	82	0	.	.
DLEC1	9940	hgsc.bcm.edu	37	3	38135138	38135138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	DLEC1_ENST00000346219,NS,carcinoma,-1,2	DLEC1_ENST00000346219	NM_007337	exon12	c.G1799T	p.G600V	TTTCTGGTGAAAA	.	40	2	73	0	.	-1
EPYC	1833	hgsc.bcm.edu	37	12	91371911	91371911	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	EPYC,NS,carcinoma,0,1	EPYC	NM_004950	exon3	c.C294A	p.P98P	CTCCTGGGGAGAA	.	53	2	49	0	.	0
HECTD4	283450	hgsc.bcm.edu	37	12	112605160	112605160	+	Silent	SNP	C	C	A	rs201036210	bycluster;alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	C12orf51_ENST00000377560,right_lower_lobe,carcinoma,0,2	C12orf51_ENST00000377560	NM_001109662	exon72	c.G12093T	p.A4031A	GATATCCGCTTCC	.	39	2	49	0	.	0
CCDC138	165055	hgsc.bcm.edu	37	2	109463227	109463227	+	Missense_Mutation	SNP	G	G	A	rs145643143		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_144978	exon12	c.G1357A	p.G453S	AGATTGGGTGAAG	.	44	4	44	0	0.000	.
TAF2	6873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120795791	120795791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_003184	exon16	c.A1942G	p.M648V	GCCACATAAAATC	.	39	28	35	0	.	.
GNA12	2768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2771312	2771312	+	Missense_Mutation	SNP	C	C	T	rs201475988	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_007353	exon4	c.G649A	p.V217I	TAATAACGAAGTC	.	39	18	49	0	.	.
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152191793	152191793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001009931	exon3	c.G2312C	p.G771A	CCAGATCCAGACC	.	55	27	41	0	.	.
RFESD	317671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94991955	94991955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001131066	exon6	c.A575G	p.K192R	CTTTTAAGTGTGA	.	47	9	53	0	.	.
TSGA10	80705	hgsc.bcm.edu	37	2	99636892	99636892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	TSGA10,NS,carcinoma,0,1	TSGA10	NM_182911	exon17	c.G1668T	p.Q556H	TGCCATCTGACTC	.	26	2	17	0	.	0
KCNB1	3745	hgsc.bcm.edu	37	20	47990628	47990628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	KCNB1,colon,carcinoma,0,1	KCNB1	NM_004975	exon2	c.G1469T	p.W490L	TTTGTCCATTTCC	.	62	2	41	0	.	0
USP29	57663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57642416	57642416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020903	exon4	c.C2373A	p.N791K	TGACAACCCAGGA	.	46	5	54	0	.	.
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54556494	54556494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001080534	exon7	c.T3577C	p.F1193L	GAAATGTTTCAGA	.	99	42	111	0	.	.
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651115	1651115	+	Silent	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	KRTAP5-5,NS,carcinoma,0,1	KRTAP5-5	NM_001001480	exon1	c.A45G	p.G15G	CTGTGGAGGCCGT	.	69	4	71	0	.	0
BNC1	646	hgsc.bcm.edu	37	15	83935682	83935682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	BNC1,NS,carcinoma,0,2	BNC1	NM_001717	exon3	c.G341A	p.R114Q	AAGAGCCGGTCCA	.	50	2	54	0	.	0
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	86057705	86057705	+	Missense_Mutation	SNP	C	C	A	rs372350812	alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_033402	exon19	c.C3058A	p.Q1020K	ATTAAGCAACTTG	.	172	103	68	0	.	.
TRIM9	114088	hgsc.bcm.edu	37	14	51492033	51492033	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_052978	exon2	c.G868T	p.E290X	TGGCTTCTTTGGC	.	62	4	60	0	.	.
ZBTB24	9841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	109787628	109787628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_014797	exon7	c.C1520T	p.A507V	AAGTGAGCCTTCA	.	47	8	38	0	.	.
LMNA	4000	hgsc.bcm.edu;broad.mit.edu	37	1	156106775	156106775	+	Missense_Mutation	SNP	C	C	T	rs57920071	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	LMNA,NS,carcinoma,0,1	LMNA	NM_170707	exon8	c.C1444T	p.R482W	ACTTACCGGTTCC	.	52	3	35	0	.	0
PCDHGA3	56112	hgsc.bcm.edu	37	5	140725274	140725274	+	Silent	SNP	C	C	T	rs200612120		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PCDHGA3_ENST00000253812,NS,carcinoma,0,3	PCDHGA3_ENST00000253812	NM_032011	exon1	c.C1674T	p.N558N	CGACAACGCGCCC	.	45	3	59	2	0.001	0
BEND7	222389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13541852	13541852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001100912	exon2	c.G218C	p.G73A	AACTGTCCACTCT	.	43	16	51	0	.	.
EDNRB	1910	hgsc.bcm.edu	37	13	78492579	78492579	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	EDNRB_ENST00000446573,NS,malignant_melanoma,0,3	EDNRB_ENST00000446573	NM_001201397	exon2	c.G400T	p.E134X	TTATCTCTGCGGT	.	43	3	49	0	.	0
ABCA13	154664	hgsc.bcm.edu	37	7	48284188	48284188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ABCA13,bladder,carcinoma,0,1	ABCA13	NM_152701	exon11	c.G1278T	p.W426C	TCTGTGGAAATTG	.	43	2	39	0	.	0
NT5DC2	64943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52561903	52561903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001134231	exon8	c.C877T	p.R293C	CCAGGCGGCTCAG	.	16	4	38	0	.	.
ZCWPW2	152098	hgsc.bcm.edu	37	3	28562602	28562602	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZCWPW2,caecum,carcinoma,0,1	ZCWPW2	NM_001040432	exon8	c.G904T	p.E302X	ATGGGAGAAAAGG	.	39	2	61	0	.	0
MIR548AI	100616347	hgsc.bcm.edu	37	14	30100276	30100276	+	RNA	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	TGTAAACTTTCAA	.	92	4	62	0	.	.
LRBA	987	hgsc.bcm.edu	37	4	151242369	151242369	+	Missense_Mutation	SNP	G	G	A	rs377257515		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	LRBA,colon,carcinoma,0,1	LRBA	NM_006726	exon51	c.C7637T	p.A2546V	TTCACCGCAAATA	.	56	3	51	0	.	0
NAE1	8883	hgsc.bcm.edu	37	16	66839907	66839907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_003905	exon18	c.A1353T	p.E451D	ATCTTCTTCAACT	.	104	2	60	0	.	.
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201618049	201618049	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020443	exon1	c.C253G	p.L85V	TCCAACCTGCGCA	.	36	12	45	0	.	.
B3GNT2	10678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62449365	62449365	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_006577	exon2	c.G10C	p.G4R	AGTGTTGGACGTC	.	34	12	35	0	.	.
CPNE1	8904	hgsc.bcm.edu	37	20	34215234	34215234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.,1	.	NM_003915	exon14	c.G1219T	p.A407S	GGGCTGCAAACCT	.	45	4	39	0	.	44
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	119295656	119295656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_024581	exon14	c.T2852C	p.M951T	GCCCGCATGATAT	.	49	7	57	0	.	.
XPOT	11260	hgsc.bcm.edu	37	12	64823857	64823857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	XPOT,caecum,carcinoma,-1,1	XPOT	NM_007235	exon17	c.G1766T	p.S589I	TGAGCAGCGATGA	.	41	2	51	0	.	-1
APOBEC4	403314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	183617622	183617622	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_203454	exon2	c.T295A	p.F99I	TTTCAAAGAGCAT	.	39	5	37	0	.	.
PLXNA4	91584	hgsc.bcm.edu	37	7	132174138	132174138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PLXNA4_ENST00000423507,NS,carcinoma,0,7	PLXNA4_ENST00000423507	NM_001105543	exon3	c.C1284A	p.D428E	GTCCCTGTCCTCC	.	30	2	36	0	.	0
POM121	9883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	72416719	72416719	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_172020	exon13	c.C2901T	p.T967T	CAAGACCCCAGGG	.	100	42	120	0	.	.
CAD	790	hgsc.bcm.edu	37	2	27464966	27464966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CAD,colon,carcinoma,0,1	CAD	NM_004341	exon39	c.G6071T	p.R2024L	TGCTCCGGCACCC	.	19	2	19	0	.	0
FHOD3	80206	hgsc.bcm.edu	37	18	34335227	34335227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	FHOD3,right_upper_lobe,carcinoma,0,1	FHOD3	NM_025135	exon22	c.G3853A	p.A1285T	AAACGGGCCAACC	.	47	2	61	0	.	0
FCGR3B	2215	hgsc.bcm.edu	37	1	161595956	161595956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001244753	exon4	c.G664A	p.V222M	TGTTCACAGTCTC	.	79	4	75	0	.	.
SACS	26278	hgsc.bcm.edu	37	13	23911856	23911856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_014363	exon10	c.G6159T	p.E2053D	CTGTTTCTCTGAA	.	98	4	62	0	.	.
BMP2K	55589	hgsc.bcm.edu	37	4	79792166	79792166	+	Missense_Mutation	SNP	C	C	G	rs200441916	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	BMP2K_ENST00000502871,caecum,carcinoma,0,4	BMP2K_ENST00000502871	NM_017593	exon11	c.C1461G	p.H487Q	GCAGCACCACCAC	.	29	5	26	1	.	0
C12orf10	60314	hgsc.bcm.edu	37	12	53700882	53700882	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_021640	exon7	c.C1080T	p.S360S	CTTGAGCATGGCC	.	38	3	57	0	.	.
TUBB4A	10382	hgsc.bcm.edu	37	19	6495789	6495789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	TUBB4,NS,carcinoma,0,1	TUBB4	NM_006087	exon4	c.C721T	p.R241C	GGAAGCGCAGGCA	.	46	2	76	0	.	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13811890	13811890	+	Missense_Mutation	SNP	G	G	T	rs376707969	alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	DNAH5,NS,malignant_melanoma,0,3	DNAH5	NM_001369	exon44	c.C7273A	p.R2425S	GCTGACGAAGAAT	.	61	7	61	0	.	0
PAFAH1B1	5048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2570445	2570445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_000430	exon5	c.C352T	p.P118S	TTCCATCCTGTGT	.	38	8	57	0	.	.
WDR93	56964	hgsc.bcm.edu	37	15	90245237	90245237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020212	exon2	c.G260A	p.S87N	AGAGCAGCCAGAT	.	64	4	59	0	.	.
BRCA2	675	hgsc.bcm.edu;bcgsc.ca	37	13	32914379	32914379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_000059	exon11	c.G5887T	p.G1963W	AGTATAGGGAAGC	.	81	4	65	0	.	.
ZNF250	58500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	146107584	146107584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_021061	exon6	c.C999A	p.H333Q	CCCAGTGTGTACC	.	30	5	25	0	.	.
SLC12A2	6558	hgsc.bcm.edu;bcgsc.ca	37	5	127483404	127483404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001046	exon11	c.G1864A	p.A622T	GTGAGTGCTCCCA	.	33	4	35	0	.	.
PPM1E	22843	hgsc.bcm.edu	37	17	57046944	57046944	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PPM1E,right_lower_lobe,carcinoma,0,1	PPM1E	NM_014906	exon4	c.G828T	p.G276G	CCATGGGGGAGTA	.	69	3	58	0	.	0
CDH5	1003	hgsc.bcm.edu	37	16	66424368	66424368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CDH5,NS,lymphoid_neoplasm,0,1	CDH5	NM_001795	exon6	c.G844T	p.V282F	CTGTTTGTTGAGG	.	47	2	36	0	.	0
ZNF721	170960	hgsc.bcm.edu	37	4	466365	466365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF721_ENST00000511833,NS,carcinoma,0,1	ZNF721_ENST00000511833	NM_133474	exon2	c.C33G	p.I11M	CTCACCTAGGGAG	.	88	4	68	1	.	0
BCO2	83875	hgsc.bcm.edu	37	11	112071442	112071442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_031938	exon7	c.C972A	p.S324R	GATAAGCTGGGAA	.	78	4	61	0	.	.
CR2	1380	hgsc.bcm.edu	37	1	207643300	207643300	+	Silent	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CR2,NS,carcinoma,0,1	CR2	NM_001006658	exon6	c.C1078A	p.R360R	AGAGGCCGAATGG	.	67	3	62	0	.	0
TMEM260	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	57046731	57046731	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_017799	exon1	c.C99T	p.F33F	GGTGTTCGCCGCC	.	42	7	35	0	.	.
KCNH7	90134	hgsc.bcm.edu	37	2	163279884	163279884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_033272	exon9	c.C2116T	p.H706Y	ATGCGTGCTGGAA	.	85	4	63	0	.	.
DSC1	1823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28710755	28710755	+	Splice_Site	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_004948	exon17	c.2533+1G>A	.	GATTTACCTTTTA	.	65	39	64	0	.	.
PRPF39	55015	hgsc.bcm.edu	37	14	45571897	45571897	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PRPF39,NS,carcinoma,0,1	PRPF39	NM_017922	exon5	c.G735A	p.Q245Q	TTTTCAGAGGTAG	.	50	2	43	0	.	0
CSRP2BP	57325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18143422	18143422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020536	exon6	c.A1504G	p.R502G	GCGAAAAGGGATA	.	32	4	55	0	.	.
CD59	966	hgsc.bcm.edu	37	11	33731761	33731761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_203331	exon5	c.C298T	p.L100F	TTTCAAGCTGTTC	.	65	4	95	0	.	.
NPLOC4	55666	hgsc.bcm.edu;bcgsc.ca	37	17	79526288	79526288	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_017921	exon17	c.C1824A	p.T608T	GCCCTAGGTCCTG	.	56	4	73	0	.	.
CCDC129	223075	hgsc.bcm.edu	37	7	31617905	31617905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CCDC129,NS,carcinoma,0,1	CCDC129	NM_001257968	exon8	c.C1105T	p.P369S	TCTATGCCGGCCA	.	25	2	34	0	.	0
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161130441	161130441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_012475	exon2	c.C11T	p.A4V	CCCAGGCCTCTGA	.	43	15	28	0	.	.
IL6ST	3572	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	55243387	55243387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_002184	exon15	c.C1871A	p.P624H	CAAACAGGCACGA	.	36	4	45	0	.	.
ITGA4	3676	hgsc.bcm.edu;bcgsc.ca	37	2	182359521	182359521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_000885	exon12	c.G1321T	p.D441Y	GATGCAGATAATA	.	69	4	58	0	.	.
TTC21A	199223	hgsc.bcm.edu	37	3	39154059	39154059	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	TTC21A,NS,carcinoma,0,1	TTC21A	NM_145755	exon5	c.G546T	p.G182G	GCTGGGGCTGATG	.	30	2	30	0	.	0
GALNT11	63917	hgsc.bcm.edu;bcgsc.ca	37	7	151802439	151802439	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_022087	exon5	c.C696T	p.G232G	GATTGGCGCGGCC	.	69	4	78	0	.	.
DNASE1L1	1774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153631921	153631921	+	Silent	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_006730	exon5	c.T354C	p.D118D	ATCCTCATCGTTG	.	42	14	42	0	.	.
VPS26A	9559	hgsc.bcm.edu	37	10	70916899	70916899	+	Silent	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	VPS26A,rectum,carcinoma,0,1	VPS26A	NM_004896	exon4	c.C366A	p.I122I	TTACATCGGTGCC	.	50	2	68	0	.	0
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95539408	95539408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_015496	exon8	c.A1064G	p.Y355C	GTCTTGTATGGAC	.	46	27	22	0	.	.
MLLT3	4300	hgsc.bcm.edu;bcgsc.ca	37	9	20414313	20414313	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_004529	exon5	c.C531T	p.S177S	GCTACTGCTGCTG	.	48	4	44	0	.	.
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238296453	238296453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_004369	exon4	c.A1084G	p.I362V	AGCGAATCTCGTC	.	29	15	20	0	.	.
LRP1B	53353	hgsc.bcm.edu	37	2	141004670	141004670	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	LRP1B,NS,carcinoma,+2,1	LRP1B	NM_018557	exon87	c.G13309C	p.D4437H	TATGATCAGACTT	.	42	2	48	0	.	+2
MUC17	140453	hgsc.bcm.edu	37	7	100682156	100682156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	MUC17,bladder,carcinoma,-2,1	MUC17	NM_001040105	exon3	c.A7459G	p.M2487V	ACACCTATGACCA	.	72	3	46	1	.	-2
WDR34	89891	hgsc.bcm.edu	37	9	131396553	131396553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	WDR34,caecum,carcinoma,0,1	WDR34	NM_052844	exon8	c.C1324T	p.R442C	ACCAGCGCACAGC	.	28	3	42	0	.	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	76440749	76440749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_173628	exon71	c.C11465T	p.T3822M	AGGGCCGTCTTGT	.	19	4	14	0	.	.
NOTCH2	4853	hgsc.bcm.edu	37	1	120539668	120539668	+	Missense_Mutation	SNP	T	T	A	rs200464440	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	NOTCH2_ENST00000369342,NS,carcinoma,0,2	NOTCH2_ENST00000369342	NM_001200001	exon4	c.A703T	p.T235S	GACAGGTGCCTCC	.	25	3	32	0	.	0
YTHDF1	54915	hgsc.bcm.edu	37	20	61834909	61834909	+	Missense_Mutation	SNP	G	G	A	rs146457378		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_017798	exon4	c.C383T	p.A128V	GAGAACGCAGGGT	.	55	4	70	0	0.000	.
CHRM3	1131	hgsc.bcm.edu	37	1	240070932	240070932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CHRM3,NS,carcinoma,0,1	CHRM3	NM_000740	exon5	c.G181A	p.G61R	CCTCTGGGAGGTC	.	40	2	31	0	.	0
CPS1	1373	hgsc.bcm.edu	37	2	211460258	211460258	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CPS1_ENST00000430249,NS,carcinoma,0,3	CPS1_ENST00000430249	NM_001122633	exon14	c.G1329A	p.Q443Q	TGGTCAGGCTGGA	.	45	2	80	0	.	0
LAMTOR2	28956	hgsc.bcm.edu;bcgsc.ca	37	1	156024684	156024684	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001145264	exon1	c.C4T	p.L2L	GGCATGCTGCGCC	.	61	4	48	0	.	.
ZNF628	89887	hgsc.bcm.edu	37	19	55994920	55994920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF628_ENST00000391718,colon,carcinoma,0,2	ZNF628_ENST00000391718	NM_033113	exon3	c.C2360T	p.A787V	AGGGAGCGGCCAG	.	25	2	19	0	.	0
FIP1L1	81608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	54257252	54257252	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_030917	exon8	c.G582A	p.R194R	AAAGAGGATACGA	.	107	50	102	0	.	.
ZNF677	342926	hgsc.bcm.edu	37	19	53740544	53740544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF677,colon,carcinoma,0,1	ZNF677	NM_182609	exon5	c.G1436T	p.R479I	TGAGTTCTCTGAT	.	46	2	50	0	.	0
SLC38A1	81539	hgsc.bcm.edu	37	12	46633559	46633559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SLC38A1,NS,carcinoma,0,1	SLC38A1	NM_030674	exon3	c.G25A	p.E9K	TTAATTCGAGTCC	.	48	2	45	0	.	0
SPIRE2	84501	hgsc.bcm.edu	37	16	89920723	89920723	+	Silent	SNP	G	G	T	rs148030912	alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	SPIRE2,caecum,carcinoma,0,1	SPIRE2	NM_032451	exon4	c.G675T	p.P225P	CGAGCCGCATCTG	.	74	3	61	0	.	0
FAM71A	149647	hgsc.bcm.edu	37	1	212798867	212798867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_153606	exon1	c.G648T	p.Q216H	GGATCAGGACCAG	.	38	4	40	0	.	.
CYP3A43	64816	hgsc.bcm.edu	37	7	99459440	99459440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CYP3A43,NS,carcinoma,0,1	CYP3A43	NM_057096	exon11	c.C1231T	p.P411S	ACAGAGCCTGAGA	.	70	3	78	0	.	0
CNOT3	4849	hgsc.bcm.edu	37	19	54649452	54649452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CNOT3_ENST00000358389,NS,malignant_melanoma,0,2	CNOT3_ENST00000358389	NM_014516	exon8	c.G602A	p.R201H	CCATCCGCAAGAT	.	19	2	27	0	.	0
ZFP57	346171	hgsc.bcm.edu	37	6	29640988	29640988	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZFP57,bladder,carcinoma,0,2	ZFP57	NM_001109809	exon4	c.C900A	p.T300T	AGCCTGGGTGCCT	.	32	2	51	0	.	0
PACS1	55690	hgsc.bcm.edu	37	11	65978677	65978677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PACS1,NS,carcinoma,0,1	PACS1	NM_018026	exon4	c.C607T	p.R203W	AAGAATCGGACCA	.	39	3	52	0	.	0
PCDHGA5	56110	hgsc.bcm.edu	37	5	140744334	140744334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PCDHGA5_ENST00000518069,colon,carcinoma,0,2	PCDHGA5_ENST00000518069	NM_032054	exon1	c.C437T	p.A146V	AAAATGCGGCTGC	.	41	2	61	0	.	0
BRD9	65980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	864589	864589	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_023924	exon16	c.G1788A	p.K596K	TTAGGTCTTGGCA	.	296	26	47	0	.	.
PCDHA5	56143	hgsc.bcm.edu	37	5	140203213	140203213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	PCDHA5_ENST00000529859,colon,carcinoma,0,2	PCDHA5_ENST00000529859	NM_018908	exon1	c.G1853A	p.R618H	GTGCGCGCATCCC	.	46	2	72	1	.	0
STAG1	10274	hgsc.bcm.edu	37	3	136136813	136136813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	STAG1,NS,carcinoma,0,1	STAG1	NM_005862	exon21	c.G2110T	p.A704S	CATGTGCACTGAA	.	65	3	61	0	.	0
C16orf45	89927	hgsc.bcm.edu	37	16	15675170	15675170	+	Missense_Mutation	SNP	C	C	T	rs371464387	alternate_allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	C16orf45,NS,neuroblastoma,0,1	C16orf45	NM_033201	exon4	c.C401T	p.A134V	ACGATGCGGAGGT	.	72	3	64	0	.	0
OR9I1	219954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57886193	57886193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001005211	exon1	c.G724A	p.A242T	GAGAGGCACATGT	.	12	5	17	0	.	.
CAPN14	440854	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	31403830	31403830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001145122	exon17	c.C1682T	p.A561V	TGGCAGGCTTCCA	.	15	4	22	0	.	.
ZNF761	388561	hgsc.bcm.edu	37	19	53958982	53958982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF761,colon,carcinoma,0,1	ZNF761	NM_001008401	exon7	c.G1221T	p.E407D	TGGAGAGAAACCT	.	66	3	83	0	.	0
TSPAN18	90139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	44941490	44941490	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_130783	exon7	c.C555T	p.D185D	TCGGGACGGGGTC	.	33	13	45	0	.	.
ARAP2	116984	hgsc.bcm.edu;bcgsc.ca	37	4	36152626	36152626	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ARAP2,colon,carcinoma,0,1	ARAP2	NM_015230	exon16	c.G2793A	p.L931L	GTAACTCAAGAAG	.	54	4	39	0	.	0
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14576921	14576921	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_018179	exon2	c.G72A	p.Q24Q	TCGTCAGCAACTT	.	84	57	86	0	.	.
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52510551	52510551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001276293	exon8	c.C854T	p.T285I	TCCCCACTTGGCA	.	8	7	28	0	.	.
MSN	4478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	64958961	64958961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_002444	exon12	c.G1474A	p.A492T	GCTAGTGCTGACC	.	42	19	34	0	.	.
ANGPT1	284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	108315583	108315583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_001146	exon5	c.G821T	p.G274V	TTTCCTCCCTTTA	.	122	32	47	0	.	.
ANK3	288	hgsc.bcm.edu	37	10	61828580	61828580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.,3	.	NM_020987	exon37	c.A12059G	p.K4020R	TGCATCTTTTTTT	.	66	3	77	0	.	703
NOS2	4843	hgsc.bcm.edu	37	17	26101406	26101406	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	NOS2,NS,carcinoma,0,1	NOS2	NM_000625	exon12	c.C1353T	p.Y451Y	GGACCGGTATTCA	.	42	2	29	0	.	0
CDC7	8317	hgsc.bcm.edu	37	1	91967356	91967356	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	CDC7,NS,carcinoma,0,4	CDC7	NM_001134419	exon2	c.T83A	p.L28X	GCTCTTTAAAAAA	.	57	3	54	1	.	0
ZNF287	57336	hgsc.bcm.edu	37	17	16455209	16455209	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020653	exon6	c.G2247A	p.Q749Q	TTGATGCTGAATA	.	95	4	90	0	.	.
IFNL3	282617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39734285	39734285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_172139	exon5	c.A578G	p.D193G	CACAGGTCCCCGC	.	62	30	105	0	.	.
GIMAP6	474344	hgsc.bcm.edu	37	7	150324841	150324841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	GIMAP6,NS,carcinoma,0,1	GIMAP6	NM_001244072	exon3	c.C1055T	p.A352V	CTGTGGGCTTCCT	.	26	2	51	0	.	0
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	50696636	50696636	+	Silent	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_172238	exon4	c.T666C	p.S222S	TCTTAGTTCTACT	.	27	16	48	0	.	.
UNC79	57578	hgsc.bcm.edu;bcgsc.ca	37	14	93994975	93994975	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_020818	exon9	c.C504T	p.C168C	AGAATGCAGCGAG	.	81	4	77	0	.	.
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18895427	18895427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_015092	exon9	c.G1084T	p.G362C	ACTGACCAAGAAG	.	348	45	305	0	.	.
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	A	rs28934573	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	TP53_ENST00000545858,NS,carcinoma,0,147	TP53_ENST00000545858	NM_000546	exon7	c.C722T	p.S241F	ATGCAGGAACTGT	.	24	14	32	0	.	0
CLSTN1	22883	broad.mit.edu;bcgsc.ca	37	1	9811620	9811620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	CLSTN1	NM_001009566	exon5	c.C560T	p.A187V	TCCACGGCCTCCA	.	28	3	52	0	.	88
LINC00303	0	broad.mit.edu	37	1	204001795	204001795	+	RNA	DEL	A	A	-	rs34103426		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	GCTATTAAAAAAA	.	8	3	8	0	.	.
BMS1	9790	broad.mit.edu	37	10	43318571	43318571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	BMS1,NS,carcinoma,0,2	BMS1	NM_014753	exon20	c.G3138A	p.M1046I	GGGAATGTTTAAT	.	354	6	317	1	.	132
.	414194	broad.mit.edu	37	10	42965532	42965532	+	RNA	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	TTACTTGCATGAA	.	52	6	53	0	.	.
EIF1AD	84285	broad.mit.edu;ucsc.edu	37	11	65767103	65767103	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	EIF1AD	NM_001242483	exon4	c.G240A	p.V80V	AGCCTTCACCTTT	.	19	4	15	0	.	10
UBE2L6	9246	broad.mit.edu	37	11	57322034	57322034	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	UBE2L6	NM_004223	exon3	c.G186A	p.P62P	CTTGAACGGATAC	.	35	4	44	1	.	20
SUGT1	10910	broad.mit.edu	37	13	53240953	53240953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	SUGT1	NM_001130912	exon11	c.G622T	p.A208S	TTGTCTGCTTTGG	.	67	3	57	0	.	37
ZIC5	85416	broad.mit.edu	37	13	100622668	100622670	+	In_Frame_Del	DEL	GGC	GGC	-	rs71114653		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ZIC5	NM_033132	exon1	c.1260_1262del	p.420_421del	GGCGGTGGCGGCG	.	24	8	6	0	-|1.000;|0.000	38
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105411931	105411931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	AHNAK2	NM_138420	exon7	c.A9857G	p.D3286G	GCACCATCCAACT	.	62	29	69	0	.	719
DDX52	11056	broad.mit.edu	37	17	35974393	35974393	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	DDX52	NM_007010	exon15	c.1748delA	p.K583fs	GTGACCTTTTTCC	.	2999	17	115	0	.	40
HDAC5	10014	broad.mit.edu	37	17	42165022	42165022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	HDAC5	NM_001015053	exon13	c.C1645A	p.H549N	CAGGGTGGGTGGT	.	30	3	34	0	.	67
NPEPPS	9520	broad.mit.edu	37	17	45663749	45663749	+	Missense_Mutation	SNP	G	G	A	rs1809279	bycluster;by2hit2allele	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	NPEPPS,NS,carcinoma,0,2	NPEPPS	NM_006310	exon8	c.G965A	p.G322D	ACTGGGGCCTTGT	.	149	4	126	0	G|0.500;A|0.500	59
LRRC37A4P	0	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	CCGTCTGAAAAGA	.	76	10	64	2	G|1.000;|0.000	.
TVP23C	201158	broad.mit.edu;bcgsc.ca	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	GTGTTCCGCAAAA	.	94	5	130	1	.	.
BIN1	274	broad.mit.edu;bcgsc.ca	37	2	127811543	127811543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	BIN1	NM_139343	exon13	c.C1177A	p.L393M	AGTCCAGGTCCAG	.	57	27	84	2	.	85
HAAO	23498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	43010487	43010487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	HAAO	NM_012205	exon4	c.G317A	p.R106Q	CGCCTTCGCTCAA	.	28	9	30	1	.	26
ZNF512B	57473	broad.mit.edu	37	20	62594090	62594090	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	ZNF512B,colon,carcinoma,-1,1	ZNF512B	NM_020713	exon13	c.G2013A	p.P671P	ACCCAGCGGGTCC	.	46	3	45	0	.	72
KRTAP27-1	643812	broad.mit.edu	37	21	31709645	31709645	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	KRTAP27-1	NM_001077711	exon1	c.G342A	p.Q114Q	GCAAGGCTGAGAA	.	22	3	32	0	.	53
HSPBAP1	79663	broad.mit.edu;bcgsc.ca	37	3	122459462	122459462	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	HSPBAP1	NM_024610	exon8	c.C1197T	p.S399S	TTCTTCGGACCTC	.	35	12	31	1	.	32
MLH1	4292	broad.mit.edu	37	3	37067150	37067150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	MLH1	NM_000249	exon12	c.G1061T	p.G354V	TTGCTGGCCCCTC	.	27	3	38	0	.	226
MUC4	4585	broad.mit.edu	37	3	195510149	195510149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	NM_018406	exon2	c.C8302T	p.P2768S	GAAGAGGGGTGGC	.	77	9	68	1	.	1505
SATB1	6304	broad.mit.edu	37	3	18391133	18391135	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	SATB1	NM_001195470	exon12	c.1915_1917del	p.639_639del	CGGTGCCTGCTGC	.	6	2	14	0	.	96
SI	6476	broad.mit.edu	37	3	164785167	164785167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	SI	NM_001041	exon6	c.T596C	p.F199S	ATGCTAAATGGGT	.	239	6	192	1	.	500
TMCC1	23023	broad.mit.edu	37	3	129370592	129370592	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	TMCC1	NM_001017395	exon6	c.A1694T	p.Q565L	TGCTGCTGCAGCT	.	34	3	24	0	.	105
BRD9	65980	broad.mit.edu	37	5	891803	891805	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	BRD9	NM_023924	exon2	c.217_219del	p.73_73del	CTCGGACTTCTTC	.	267	6	44	0	.	113
MLLT4	4301	broad.mit.edu	37	6	168289932	168289932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	MLLT4,NS,carcinoma,-1,1	MLLT4	NM_001040000	exon7	c.A935G	p.K312R	ATGAAAAGGGTGC	.	40	3	46	0	.	351
CCT6P3	0	broad.mit.edu	37	7	64530103	64530103	+	RNA	SNP	G	G	A	rs369683052	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	TGCTTGGGACATG	.	98	4	92	0	.	.
MMP16	4325	broad.mit.edu	37	8	89053972	89053972	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	MMP16	NM_005941	exon10	c.T1541A	p.I514K	TTGAGTATCTGGT	.	35	3	42	0	.	176
COX1	4512	broad.mit.edu	37	MT	5970	5970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	ENST00000361624	exon1	c.G67A	p.G23S	TTATTCGGCGCAT	.	53	9	44	0	.	.
FGF16	8823	broad.mit.edu;ucsc.edu	37	X	76709751	76709751	+	Splice_Site	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	FGF16	NM_003868	exon1	c.G105A	p.S35S	TGGGTCGGTAAGT	.	67	21	58	0	.	16
.	0	broad.mit.edu;bcgsc.ca	37	X	153149697	153149697	+	Missense_Mutation	SNP	G	G	A	rs375989685		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	GTACACGACTGCC	.	26	10	44	0	.	.
MSN	4478	broad.mit.edu	37	X	64956743	64956743	+	Missense_Mutation	SNP	A	A	G	rs200135811		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	MSN	NM_002444	exon9	c.A1046G	p.E349G	TGATGGAGAGGCT	.	66	3	47	1	.	89
ABCA4	24	ucsc.edu;bcgsc.ca	37	1	94486813	94486813	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ABCA4	NM_000350	exon35	c.G5001A	p.Q1667Q	TGAGAGCTGCTCC	.	24	4	44	0	.	275
DRD5	1816	ucsc.edu	37	4	9783917	9783917	+	Silent	SNP	T	T	C	rs76288744	bycluster	TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	DRD5	NM_000798	exon1	c.T264C	p.L88L	AGACCTTTTCGTG	.	34	9	40	5	.	119
CEP85L	387119	ucsc.edu;bcgsc.ca	37	6	118886922	118886922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	CEP85L	NM_001178035	exon4	c.C799T	p.P267S	TAATGGGCTTGCT	.	36	4	41	0	.	26
RPS6KA2	6196	ucsc.edu;bcgsc.ca	37	6	166826350	166826350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	RPS6KA2	NM_001006932	exon22	c.C2126A	p.A709D	TTTAGAGCAAAGT	.	36	4	30	0	.	212
TMEM132A	54972	ucsc.edu;bcgsc.ca	37	11	60696291	60696291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	TMEM132A	NM_178031	exon4	c.C725T	p.A242V	GCCCAGCAGACCC	.	30	4	27	0	.	135
DPY19L2	283417	ucsc.edu	37	12	63964599	63964599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	DPY19L2,NS,carcinoma,0,1	DPY19L2	NM_173812	exon20	c.A1939G	p.I647V	GCTTGATGCTTGC	.	61	9	48	2	.	97
ADAMTSL3	57188	ucsc.edu;bcgsc.ca	37	15	84700090	84700090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ADAMTSL3	NM_207517	exon28	c.C4660A	p.P1554T	CAGTGTCCTGGAC	.	25	4	30	0	.	290
PRKCA	5578	ucsc.edu;bcgsc.ca	37	17	64685166	64685166	+	Splice_Site	SNP	G	G	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	PRKCA	NM_002737	exon8	c.918+1G>A	.	TTCGAGGTGAGGA	.	49	5	47	0	.	82
GCDH	2639	ucsc.edu;bcgsc.ca	37	19	13007078	13007078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	GCDH	NM_013976	exon8	c.G695T	p.C232F	ATGGCTGCATTCG	.	36	4	50	0	.	76
GNB1L	54584	ucsc.edu	37	22	19808754	19808754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	GNB1L	NM_053004	exon3	c.C125A	p.S42X	CACCCTGAGAAGA	.	35	4	51	0	.	34
ARHGEF3	50650	bcgsc.ca	37	3	56807804	56807804	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ARHGEF3	NM_001128615	exon5	c.C233T	p.T78M	AGCGACGTGACTC	.	47	4	85	0	.	128
TRIM2	23321	bcgsc.ca	37	4	154237032	154237032	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	TRIM2	NM_015271	exon8	c.C1663T	p.R555C	CGGGGACGCTCTC	.	18	3	24	0	.	105
ARAP3	64411	bcgsc.ca	37	5	141039000	141039000	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ARAP3	NM_022481	exon23	c.T3311A	p.L1104H	GTGATAAGACTGA	.	14	3	43	0	.	139
.	0	bcgsc.ca	37	7	56357187	56357187	+	RNA	SNP	G	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	ACCAGAGTTACTG	.	78	4	57	0	.	.
TYW1B	441250	bcgsc.ca	37	7	72093929	72093929	+	RNA	SNP	C	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	CTGGAGCTCGTCC	.	68	4	71	0	.	.
.	402333	bcgsc.ca	37	8	11891485	11891485	+	RNA	SNP	C	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	TACTATCGAAATA	.	54	28	87	0	.	.
.	0	bcgsc.ca	37	9	30559152	30559152	+	RNA	SNP	C	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	TGTTTTCATGGGT	.	21	6	32	0	.	.
.	0	bcgsc.ca	37	12	58068622	58068622	+	RNA	SNP	C	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	TTCCTCCGCAAGC	.	20	13	36	0	.	.
SRCAP	10847	bcgsc.ca	37	16	30722104	30722104	+	Silent	SNP	G	A	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	SRCAP	NM_006662	exon9	c.G1164A	p.Q388Q	CACACAGCGCAAC	.	30	4	33	0	.	298
CACNG4	27092	bcgsc.ca	37	17	65026740	65026740	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	CACNG4	NM_014405	exon4	c.G604A	p.A202T	GTCCTGGCTGTAA	.	65	4	72	0	.	44
ANKRD24	170961	bcgsc.ca	37	19	4217178	4217178	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	ANKRD24	NM_133475	exon18	c.C2021T	p.A674V	TGGAGGCCACGGG	.	10	3	18	0	.	180
KIRREL2	84063	bcgsc.ca	37	19	36351555	36351555	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	KIRREL2	NM_199180	exon7	c.C914T	p.A305V	GTACTGCGCTGGA	.	15	3	32	0	.	170
PAGE1	8712	bcgsc.ca	37	X	49458702	49458702	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	PAGE1	NM_003785	exon3	c.G166T	p.G56W	CTTCACCTTGAGC	.	101	6	95	0	.	23
LCE4A	199834	hgsc.bcm.edu	37	1	152681695	152681696	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	TG	TG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	NM_178356	exon1	c.G145T	p.G49C	GGCTGTGGTTGCT	.	34	7	33	0	.	.
USP29	0	broad.mit.edu	37	19	57641516	57641517	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	GA	GA						Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	USP29	NM_020903	exon4	c.A1474C	p.QK491HQ	AAGCAGAAGAGTT	.	29	3	25	0	.	186
.	0	bcgsc.ca	37	14	27396917	27396918	+	RNA	DNP	AA	AA	GG	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	.	.	.	ATGGCAAAAAAAA	.	152	14	135	0	.	.
PCSK6	5046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	101929744	101929744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVC-01A-21D-A417-09	TCGA-3X-AAVC-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f8ff080-bd3a-4f6c-a410-8072cad1487d	bec1f340-525b-4029-bf48-4e747de711b1	.	.	.	p.C411Y	.	.	TCGGTACAGCGCT	.	52	4	46	0	.	.
