Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
PTCHD3	374308	hgsc.bcm.edu	37	10	27702894	27702923	+	In_Frame_Del	DEL	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	-	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001034842	exon1	c.258_287del	p.86_96del	CCGGCAGGGGTGC	.	16	2	10	0	.	.
TLR1	7096	hgsc.bcm.edu	37	4	38798585	38798585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TLR1,NS,carcinoma,0,1	TLR1	NM_003263	exon4	c.C1868A	p.A623D	TTCCTGGCCCTGC	.	30	2	35	0	.	0
GLI2	2736	hgsc.bcm.edu	37	2	121732608	121732608	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GLI2,bladder,carcinoma,0,1	GLI2	NM_005270	exon8	c.G1291T	p.E431X	GAGGCTGAGGTGG	.	18	2	12	0	.	0
PTPN13	5783	hgsc.bcm.edu	37	4	87643569	87643569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	PTPN13,NS,carcinoma,0,1	PTPN13	NM_006264	exon10	c.G1590T	p.M530I	AGCCATGACTCAA	.	48	2	45	0	.	0
WDR33	55339	hgsc.bcm.edu	37	2	128522061	128522061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	WDR33_ENST00000409658,NS,carcinoma,0,2	WDR33_ENST00000409658	NM_001006622	exon6	c.G967A	p.E323K	TGAATTCTTTATT	.	49	2	37	0	.	0
VNN2	8875	hgsc.bcm.edu	37	6	133070863	133070863	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	VNN2,face,carcinoma,0,2	VNN2	NM_004665	exon6	c.G1342T	p.E448X	GAATTTCGGTAAG	.	48	2	69	0	.	0
RPS21	6227	hgsc.bcm.edu	37	20	60962906	60962906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	RPS21,NS,carcinoma,0,1	RPS21	NM_001024	exon4	c.A122G	p.K41R	TTGACAAGGTCAC	.	14	2	26	0	.	0
OR2M1P	388762	hgsc.bcm.edu	37	1	248285841	248285841	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	TTTGCTCTATAGT	.	68	5	49	0	.	.
NDEL1	81565	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	8350192	8350192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001025579	exon4	c.G361A	p.A121T	GAGCAGGCCAACG	.	55	5	65	0	.	.
GEMIN5	25929	hgsc.bcm.edu	37	5	154270801	154270801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GEMIN5,NS,carcinoma,0,1	GEMIN5	NM_015465	exon26	c.G4262A	p.C1421Y	ACTTACCACTGGC	.	16	2	14	0	.	0
CDCA2	157313	hgsc.bcm.edu	37	8	25317954	25317954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	CDCA2,NS,carcinoma,0,1	CDCA2	NM_152562	exon3	c.C116T	p.A39V	AGCATGCCGAATT	.	33	2	47	0	.	0
ZNF683	257101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26691514	26691514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_173574	exon4	c.T523C	p.C175R	GGGGACAGGGGCA	.	31	4	28	0	.	.
PEX1	5189	hgsc.bcm.edu	37	7	92122368	92122368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_000466	exon20	c.G3106T	p.A1036S	CTGATGCTACATG	.	57	4	57	0	.	.
ICA1	3382	hgsc.bcm.edu	37	7	8268281	8268281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ICA1,rectum,carcinoma,0,1	ICA1	NM_022307	exon4	c.C206A	p.T69N	AGACAGGTTCTCT	.	23	2	10	0	.	0
UPP1	7378	hgsc.bcm.edu;bcgsc.ca	37	7	48139352	48139352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_003364	exon4	c.C130A	p.H44N	AGCAGACACAATT	.	60	4	62	0	.	.
TEK	7010	hgsc.bcm.edu	37	9	27202967	27202967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TEK_ENST00000380036,colon,carcinoma,0,2	TEK_ENST00000380036	NM_000459	exon13	c.G2059T	p.V687L	GTTGATGTGAAGA	.	45	3	24	0	.	0
MRPL22	29093	hgsc.bcm.edu	37	5	154336753	154336753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_014180	exon5	c.G320T	p.G107V	AAAAAGGGGCCAA	.	99	4	68	0	.	.
GPR125	166647	hgsc.bcm.edu	37	4	22390066	22390066	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GPR125,right_upper_lobe,carcinoma,0,1	GPR125	NM_145290	exon19	c.C3228A	p.P1076P	GTTGGGGGGCTGG	.	39	2	26	0	.	0
CPED1	79974	hgsc.bcm.edu;bcgsc.ca	37	7	120773877	120773877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001105533	exon12	c.G1578T	p.W526C	TTGCAGGAATTCT	.	58	4	39	0	.	.
RBBP6	5930	hgsc.bcm.edu	37	16	24582226	24582226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_006910	exon18	c.G3839T	p.R1280L	CTGTGCGGAAATC	.	92	4	77	0	.	.
GRASP	160622	hgsc.bcm.edu	37	12	52407671	52407671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GRASP,lower_third,carcinoma,0,1	GRASP	NM_181711	exon6	c.C559A	p.L187I	GAAACTCTATATG	.	27	2	20	0	.	0
FBXO2	26232	hgsc.bcm.edu	37	1	11710798	11710798	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	FBXO2,NS,carcinoma,0,1	FBXO2	NM_012168	exon2	c.A116C	p.E39A	GCCGCCTCCTCCT	.	8	3	8	1	.	0
SEMA6D	80031	hgsc.bcm.edu;bcgsc.ca	37	15	48052508	48052508	+	Silent	SNP	G	G	A	rs140647776		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_153617	exon3	c.G117A	p.R39R	TTCAAGGCAATAT	.	46	4	36	0	0.000	.
DARC	2532	hgsc.bcm.edu	37	1	159175339	159175339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	DARC_ENST00000368121,NS,neuroblastoma,0,1	DARC_ENST00000368121	NM_001122951	exon1	c.C116T	p.P39L	CCTTCCCAGATGG	.	27	2	18	0	.	0
FAM86DP	692099	hgsc.bcm.edu	37	3	75476061	75476061	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	CGTGAACTTCGTG	.	19	4	16	0	.	.
ZNF263	10127	hgsc.bcm.edu	37	16	3339426	3339426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ZNF263,NS,carcinoma,0,1	ZNF263	NM_005741	exon6	c.C920A	p.P307Q	GTGTTCCGTCTGT	.	36	2	35	0	.	0
SPTA1	6708	hgsc.bcm.edu	37	1	158618388	158618388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_003126	exon26	c.G3625A	p.A1209T	GGTCTGCAGCACT	.	34	4	23	0	.	.
KCNH8	131096	hgsc.bcm.edu	37	3	19436644	19436644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	KCNH8,NS,carcinoma,-1,2	KCNH8	NM_144633	exon7	c.C1018T	p.R340C	CTTTTGCGTCTGC	.	47	2	31	1	.	-1
SON	6651	hgsc.bcm.edu	37	21	34948697	34948697	+	Silent	SNP	A	A	G	rs199930883	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.,4	.	NM_138927	exon12	c.A7248G	p.R2416R	TACCAGACCCAAT	.	74	4	40	1	.	343
SCYL1	57410	hgsc.bcm.edu	37	11	65303776	65303776	+	Missense_Mutation	SNP	C	C	T	rs377549319		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SCYL1_ENST00000270176,caecum,carcinoma,0,1	SCYL1_ENST00000270176	NM_020680	exon12	c.C1622T	p.S541L	CTGTGTCGGAGGA	.	17	2	17	0	.	0
MUC7	4589	hgsc.bcm.edu	37	4	71346978	71346978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	MUC7,NS,carcinoma,0,5	MUC7	NM_001145007	exon4	c.T517C	p.S173P	ACACCTTCTGCAA	.	47	2	49	0	.	0
JAG2	3714	hgsc.bcm.edu	37	14	105609199	105609199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_002226	exon26	c.G3550A	p.G1184S	CGCGGCCCAGATC	.	29	4	34	0	.	.
TBP	6908	hgsc.bcm.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TBP,NS,carcinoma,0,2	TBP	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG	.	28	3	27	1	.	0
TRAF5	7188	hgsc.bcm.edu	37	1	211533365	211533365	+	Nonsense_Mutation	SNP	C	C	T	rs200980823		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TRAF5,NS,carcinoma,0,2	TRAF5	NM_004619	exon5	c.C490T	p.R164X	CAGTTTCGAAAGG	.	44	2	43	0	0.001	0
SLC22A12	116085	hgsc.bcm.edu	37	11	64367324	64367324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SLC22A12,caecum,carcinoma,0,1	SLC22A12	NM_144585	exon7	c.C1247T	p.A416V	TGCTGGCAGGGCT	.	12	2	14	0	.	0
MAP3K4	4216	hgsc.bcm.edu	37	6	161519381	161519381	+	Missense_Mutation	SNP	C	C	T	rs146403419	bycluster	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	MAP3K4_ENST00000392142,colon,carcinoma,0,12	MAP3K4_ENST00000392142	NM_005922	exon17	c.C3596T	p.A1199V	CTGCTGCTGTTGC	.	24	2	35	2	0.000	0
HEATR6	63897	hgsc.bcm.edu	37	17	58156223	58156223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_022070	exon1	c.C53T	p.A18V	CGCGGTGCCTCCC	.	46	4	30	0	.	.
GBP7	388646	hgsc.bcm.edu;bcgsc.ca	37	1	89616212	89616212	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_207398	exon6	c.C672A	p.I224I	ATGCCTGATCCAC	.	68	4	55	0	.	.
DPRX	503834	hgsc.bcm.edu	37	19	54140174	54140174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	DPRX,NS,carcinoma,0,1	DPRX	NM_001012728	exon3	c.C508A	p.Q170K	GAATCCCAAGTTT	.	32	2	33	0	.	0
FAIM3	9214	hgsc.bcm.edu	37	1	207087180	207087180	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	FAIM3,NS,carcinoma,0,2	FAIM3	NM_005449	exon2	c.C297T	p.S99S	GACTCCGCTGTCA	.	25	2	29	0	.	0
DICER1	23405	hgsc.bcm.edu;bcgsc.ca	37	14	95562824	95562824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_030621	exon24	c.C4433T	p.A1478V	TCATATGCAGAAT	.	64	4	76	0	.	.
AQR	9716	hgsc.bcm.edu;bcgsc.ca	37	15	35155082	35155082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	AQR,NS,carcinoma,0,1	AQR	NM_014691	exon33	c.C4015A	p.P1339T	TAGTTGGGAAAGG	.	59	4	43	0	.	0
OR2M2	391194	hgsc.bcm.edu;bcgsc.ca	37	1	248344069	248344069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001004688	exon1	c.G782T	p.R261L	ACATACGGCCCAC	.	71	4	45	0	.	.
KIAA1549L	25758	hgsc.bcm.edu	37	11	33689544	33689544	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	C11orf41_ENST00000321505,caecum,carcinoma,0,1	C11orf41_ENST00000321505	NM_012194	exon20	c.G5394A	p.A1798A	CCCGGCGCCCTCC	.	19	2	17	0	.	0
ECM1	1893	hgsc.bcm.edu	37	1	150484858	150484858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ECM1,colon,carcinoma,0,1	ECM1	NM_001202858	exon8	c.C1195T	p.R399W	TGTGACCGGGAGT	.	50	2	29	0	.	0
LOXHD1	125336	hgsc.bcm.edu	37	18	44173638	44173638	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	LOXHD1_ENST00000398722,colon,carcinoma,0,2	LOXHD1_ENST00000398722	NM_144612	exon10	c.G1356A	p.Q452Q	CCCCTTCTGCCCA	.	36	2	35	0	.	0
FRG1B	284802	hgsc.bcm.edu	37	20	29627955	29627955	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	CTAAATCAGTTTT	.	16	4	16	0	.	.
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72874933	72874933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_032175	exon11	c.G1238T	p.R413L	CAGGTCGGGATGA	.	62	4	41	0	.	.
APC	324	hgsc.bcm.edu	37	5	112176192	112176192	+	Missense_Mutation	SNP	C	C	A	rs370433763	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	APC,NS,carcinoma,0,2	APC	NM_001127510	exon17	c.C4901A	p.P1634Q	TTACACCGGGGGA	.	49	2	38	0	.	0
SDHA	6389	hgsc.bcm.edu	37	5	251468	251468	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SDHA,NS,malignant_melanoma,0,1	SDHA	NM_004168	exon13	c.C1679G	p.T560R	GGAACACGGACCT	.	62	3	60	0	.	0
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	157522560	157522560	+	Missense_Mutation	SNP	G	G	A	rs3210165	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_020732	exon18	c.G4832A	p.G1611D	CTCCTGGCTCAGT	.	41	4	39	0	.	.
SLC7A7	9056	hgsc.bcm.edu	37	14	23242838	23242838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SLC7A7,NS,haematopoietic_neoplasm,0,1	SLC7A7	NM_001126105	exon11	c.G1517A	p.R506Q	GGATCCCGTTGCT	.	23	2	19	0	.	0
CCDC61	729440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46511419	46511419	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001267723	exon5	c.C411T	p.L137L	GCCCCTCCCGTAC	.	64	5	52	0	.	.
ZNF791	163049	hgsc.bcm.edu	37	19	12739912	12739912	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ZNF791,NS,carcinoma,0,2	ZNF791	NM_153358	exon4	c.C1569A	p.P523P	GAAACCCTATAAA	.	38	2	27	0	.	0
BAIAP2L2	80115	hgsc.bcm.edu;bcgsc.ca	37	22	38504287	38504287	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_025045	exon3	c.G189A	p.L63L	GCTCTGCAGGGCA	.	45	4	35	0	.	.
MIA3	375056	hgsc.bcm.edu	37	1	222825333	222825333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	MIA3,NS,carcinoma,0,1	MIA3	NM_198551	exon12	c.G3924T	p.K1308N	AAACAAGAAATCT	.	42	2	27	0	.	0
PHIP	55023	hgsc.bcm.edu	37	6	79707219	79707219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	PHIP,colon,carcinoma,0,2	PHIP	NM_017934	exon19	c.G2113A	p.A705T	TTGGTGCGTTGCT	.	38	3	50	0	.	0
MATN4	8785	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	43932932	43932932	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_030592	exon3	c.C579A	p.V193V	GAGGAAGACGTGC	.	23	4	19	0	.	.
ATG16L1	55054	hgsc.bcm.edu	37	2	234191392	234191392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ATG16L1_ENST00000334050,NS,carcinoma,+1,2	ATG16L1_ENST00000334050	NM_030803	exon12	c.G1196T	p.R399L	ATTATCGATTACG	.	31	2	33	0	.	+1
NLRX1	79671	hgsc.bcm.edu	37	11	119043116	119043116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	NLRX1,mouth,carcinoma,0,1	NLRX1	NM_024618	exon3	c.G122A	p.R41H	GGGAGCGTCCCTT	.	61	3	49	0	.	0
CLCC1	23155	hgsc.bcm.edu	37	1	109493041	109493041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	CLCC1_ENST00000369971,right_upper_lobe,carcinoma,0,2	CLCC1_ENST00000369971	NM_001048210	exon2	c.C19A	p.L7I	CACAAAGGAGCAA	.	24	2	14	0	.	0
GPR123	84435	hgsc.bcm.edu;bcgsc.ca	37	10	134916323	134916323	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001083909	exon5	c.G378A	p.P126P	GCCACCGTACCCC	.	58	4	52	0	.	.
ABCB7	22	hgsc.bcm.edu	37	X	74375943	74375943	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001271697	exon1	c.C165A	p.Y55X	CACCTGGTAGGCT	.	97	3	100	0	.	.
ABCA3	21	hgsc.bcm.edu	37	16	2347794	2347794	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	ABCA3,colon,carcinoma,0,1	ABCA3	NM_001089	exon16	c.C2025T	p.I675I	GATGCCGATGGAG	.	61	3	21	0	.	0
ADAMTSL2	9719	hgsc.bcm.edu	37	9	136404934	136404934	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_014694	exon5	c.C351T	p.C117C	GCAGTGCGTCTCC	.	68	4	61	0	.	.
TBXA2R	6915	hgsc.bcm.edu	37	19	3600542	3600542	+	Missense_Mutation	SNP	C	C	T	rs201738444		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	TBXA2R,NS,carcinoma,0,1	TBXA2R	NM_201636	exon2	c.G91A	p.A31T	AGGCGGCGAACCA	.	59	3	47	1	.	0
USP8	9101	hgsc.bcm.edu;ucsc.edu	37	15	50785054	50785054	+	Silent	SNP	C	C	T	rs199814360		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_001128610	exon15	c.C2391T	p.N797N	ATGTAACGCTCCA	.	40	6	23	0	.	.
CAMTA1	23261	hgsc.bcm.edu	37	1	7737779	7737779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	CAMTA1,colon,carcinoma,0,1	CAMTA1	NM_015215	exon11	c.G2900T	p.W967L	ACGACTGGCTGTC	.	29	2	29	0	.	0
IFT172	26160	hgsc.bcm.edu;ucsc.edu	37	2	27670404	27670404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	NM_015662	exon42	c.C4637T	p.A1546V	TGGGCTGCAGAGC	.	23	4	12	0	.	.
SMG8	55181	hgsc.bcm.edu	37	17	57288786	57288786	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	SMG8,middle_lobe,carcinoma,0,1	SMG8	NM_018149	exon1	c.G1374T	p.V458V	TGAGGTGGCTATT	.	43	2	43	0	.	0
LOC149086	0	broad.mit.edu	37	1	31972885	31972885	+	RNA	DEL	T	T	-	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	TTCCTCTTTGGTA	.	12	4	4	0	.	.
DDX11	1663	broad.mit.edu	37	12	31242073	31242073	+	Silent	SNP	T	T	C	rs3874111		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	DDX11	NM_030653	exon7	c.T780C	p.L260L	CTCCCTTGGCTCC	.	75	8	70	1	.	188
DDX11	1663	broad.mit.edu;ucsc.edu	37	12	31242081	31242081	+	Missense_Mutation	SNP	G	G	A	rs201968272	bycluster	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	DDX11,extremity,malignant_melanoma,0,1	DDX11	NM_030653	exon7	c.G788A	p.R263Q	GCTCCCGGCAGGT	.	66	8	59	0	G|0.994;A|0.006	188
.	0	broad.mit.edu	37	12	9716824	9716824	+	RNA	SNP	T	T	C	rs372094857		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	TGGCTATAATCAT	.	136	7	126	1	.	.
TMEM87A	25963	broad.mit.edu	37	15	42556290	42556290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	TMEM87A	NM_001110503	exon4	c.C403A	p.Q135K	TTACCTGTGTTTT	.	46	3	40	0	.	56
LRRC37A4P	0	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	CCGTCTGAAAAGA	.	75	3	74	1	G|1.000;|0.000	.
LOC541471	0	broad.mit.edu	37	2	112252464	112252464	+	RNA	SNP	G	G	A	rs1128295	bycluster	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	TCACCAGGGAGAG	.	66	5	72	1	G|0.500;A|0.500	.
FRG1B	0	broad.mit.edu;bcgsc.ca	37	20	29632680	29632680	+	Silent	SNP	G	G	A	rs4892355		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	FRG1B	.	.	.	.	TAAAAAGGCTCAG	.	325	16	259	3	G|0.500;A|0.500	181
TPTE	7179	broad.mit.edu	37	21	10916473	10916473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	TPTE	NM_199261	exon20	c.G1173T	p.K391N	ATATCTCTTCTGA	.	223	6	174	0	.	513
MUC4	4585	broad.mit.edu	37	3	195508133	195508133	+	Missense_Mutation	SNP	G	G	A	rs202065387		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	MUC4_ENST00000463781,NS,carcinoma,0,4	MUC4	NM_018406	exon2	c.C10318T	p.P3440S	GAACAGGGGTGGC	.	99	8	75	0	.	1505
GUSBP1	0	broad.mit.edu	37	5	21490977	21490978	+	RNA	DEL	TT	TT	-	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	AAAAAATTAAATT	.	17	3	8	0	.	.
FAM46A	55603	broad.mit.edu	37	6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	FAM46A,colon,carcinoma,+1,1	FAM46A	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	5	1	4	0	.	37
CCT6P1	0	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	TCTTGCGCAGAAT	.	75	3	53	0	.	.
MED12	9968	broad.mit.edu	37	X	70349589	70349589	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	MED12	NM_005120	exon27	c.G3751T	p.E1251X	CTTCCAGAGGAGG	.	35	3	28	0	.	984
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	96	8	71	1	.	28
OR2T34	127068	ucsc.edu	37	1	248737734	248737734	+	Missense_Mutation	SNP	G	G	A	rs946770	bycluster	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	OR2T34,NS,carcinoma,0,4	OR2T34	NM_001001821	exon1	c.C325T	p.H109Y	TCAGGTGGAAGAA	.	32	4	20	0	.	72
STXBP5	134957	ucsc.edu	37	6	147648314	147648314	+	Missense_Mutation	SNP	C	C	T	rs368337313	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	STXBP5	NM_139244	exon18	c.C1982T	p.A661V	AGAAAGCAGTGCT	.	39	4	21	0	.	163
FER1L6	654463	ucsc.edu	37	8	125081641	125081641	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	FER1L6	NM_001039112	exon29	c.G3759T	p.G1253G	AGATGGGCCAAAG	.	34	4	32	0	.	268
CACNB2	783	ucsc.edu	37	10	18690927	18690927	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	CACNB2	NM_201596	exon3	c.C288T	p.R96R	AGTGCGCAGAGAA	.	38	4	22	0	.	220
ZNF624	57547	ucsc.edu;bcgsc.ca	37	17	16527621	16527621	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	ZNF624	NM_020787	exon6	c.C579A	p.L193L	CTTCTTGAGTGGA	.	42	4	47	0	.	91
LPIN2	9663	ucsc.edu	37	18	2923829	2923829	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	LPIN2	NM_014646	exon16	c.G2118A	p.Q706Q	GCCCAGCTGTGGG	.	31	4	24	0	.	75
MAPK12	6300	ucsc.edu	37	22	50694524	50694524	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	MAPK12	NM_002969	exon7	c.C609A	p.Y203X	CTGCGTGTAGCGC	.	21	4	18	0	.	43
GPATCH2	55105	bcgsc.ca	37	1	217604610	217604610	+	Silent	SNP	T	C	C	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	GPATCH2,NS,carcinoma,-2,1	GPATCH2	NM_018040	exon10	c.A1464G	p.R488R	GCCATCTCGTCCA	.	57	4	42	0	.	53
DNAH6	1768	bcgsc.ca	37	2	84822773	84822773	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	DNAH6	NM_001370	exon18	c.A2728G	p.K910E	TAGTCCAAATTTG	.	47	4	27	0	.	194
CCDC14	64770	bcgsc.ca	37	3	123633883	123633883	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	CCDC14	NM_022757	exon12	c.G2482A	p.A828T	TGGCAGCAGGGAT	.	40	4	41	0	.	97
DDX60	55601	bcgsc.ca	37	4	169214990	169214990	+	Missense_Mutation	SNP	C	A	A	rs146995893	alternate_allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	DDX60	NM_017631	exon7	c.G830T	p.R277L	AAAAAGCGATGGT	.	66	4	50	0	C|1.000;T|0.000	304
SLC2A12	154091	bcgsc.ca	37	6	134350693	134350693	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	SLC2A12	NM_145176	exon2	c.C270A	p.A90A	AAGGAGGGCTCCA	.	10	3	20	0	.	43
LOC729732	100271260	bcgsc.ca	37	8	12428040	12428040	+	RNA	SNP	C	A	A	rs4115597	bycluster;by2hit2allele	TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	AATTGGCAAACCT	.	30	5	26	0	C|0.833;A|0.167	.
FLJ31813	0	bcgsc.ca	37	10	51820731	51820731	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	CAGCTTGCCAATC	.	66	4	76	0	.	.
MUC2	4583	bcgsc.ca	37	11	1093312	1093312	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	MUC2	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	329	18	300	11	.	614
SECISBP2L	9728	bcgsc.ca	37	15	49304061	49304061	+	Splice_Site	SNP	C	A	A	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	SECISBP2L	NM_001193489	exon14	c.1732-1G>T	.	AATAACCTAAAAG	.	69	4	53	0	.	118
PIF1	80119	bcgsc.ca	37	15	65114771	65114771	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	PIF1	NM_025049	exon3	c.C597A	p.S199R	GGGCAAGCTCAGC	.	56	4	50	0	.	43
.	0	broad.mit.edu	37	2	38710046	38710047	+	RNA	DNP	TA	TA	AT	novel		TCGA-W5-AA2H-01A-31D-A417-09	TCGA-W5-AA2H-10A-01D-A41A-09	TA	TA						Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d06dd55a-d1a0-4571-b5c2-9d0b89ec7839	a5370b86-69de-4f97-87c3-777c38cee0e9	.	.	.	.	.	.	AATAATAAATAAA	.	45	10	46	5	.	.
