Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74279212	74279212	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_000477	exon8	c.918delT	p.P306fs	AAACCTCTGTTGG	.	89	42	90	0	.	.
IL32	9235	hgsc.bcm.edu	37	16	3119299	3119300	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004221	exon7	c.510_511insC	p.R170fs	CCCACGGGGGGAC	.	103	21	81	0	.	.
ZNF233	353355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44777811	44777812	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001207005	exon5	c.997_998del	p.333_333del	CTCATCAGAGAGT	.	30	11	34	0	.	.
PBRM1	55193	hgsc.bcm.edu	37	3	52621438	52621439	+	In_Frame_Ins	INS	-	-	AAT	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.,1	.	NM_018313	exon20	c.2979_2980insATT	p.F993delinsLF	ACTCTTAAAAACT	.	45	27	76	0	.	1252
HHLA2	11148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108072349	108072349	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_007072	exon4	c.139delA	p.I47X	AAGATATAATTCT	.	73	23	77	0	.	.
RBM26	64062	hgsc.bcm.edu	37	13	79918911	79918911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	RBM26_ENST00000327303,trunk,malignant_melanoma,0,2	RBM26_ENST00000327303	NM_022118	exon14	c.G1996A	p.G666S	TTAGGCCAGTAGA	.	41	3	66	0	.	0
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133153423	133153423	+	Missense_Mutation	SNP	C	C	T	rs138181943		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004519	exon10	c.G1418A	p.R473H	GCCGTGCGGAAAC	.	35	13	44	0	0.000	.
BANK1	55024	hgsc.bcm.edu	37	4	102816512	102816512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	BANK1,NS,carcinoma,0,1	BANK1	NM_017935	exon6	c.G954T	p.E318D	ACATGAGATACCA	.	59	3	66	0	.	0
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	230672523	230672523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004238	exon16	c.G2253C	p.K751N	TCCCTTCTTCAAC	.	42	12	29	0	.	.
UCKL1	54963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62577877	62577877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_017859	exon2	c.C233T	p.T78I	TAGATGGTACGCT	.	47	9	48	0	.	.
PKHD1L1	93035	hgsc.bcm.edu	37	8	110457602	110457602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PKHD1L1,NS,carcinoma,0,1	PKHD1L1	NM_177531	exon38	c.C5504A	p.S1835Y	TAGCATCTCTATC	.	35	2	32	0	.	0
RBL2	5934	hgsc.bcm.edu	37	16	53513070	53513070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	RBL2,NS,carcinoma,0,1	RBL2	NM_005611	exon18	c.C2708A	p.T903K	AGGTCACAAAAGA	.	22	2	21	0	.	0
MIR941-3	100126352	hgsc.bcm.edu	37	20	62551131	62551131	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ENSG00000101152,right_lower_lobe,carcinoma,0,1	ENSG00000101152	.	.	.	.	GGGCCCGGGACAG	.	49	3	29	1	.	0
PRG4	10216	hgsc.bcm.edu	37	1	186276306	186276306	+	Silent	SNP	T	T	C	rs78867190	bycluster	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PRG4,NS,carcinoma,0,1	PRG4	NM_005807	exon7	c.T1455C	p.T485T	ACCCACTGCCCCC	.	86	4	77	1	.	0
RIOK2	55781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	96504525	96504525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001159749	exon7	c.G811T	p.D271Y	AGAAATCTTTAAT	.	96	39	87	0	.	.
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	220151958	220151958	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004446	exon28	c.A4013T	p.N1338I	CGGATGTTAACAC	.	43	15	58	0	.	.
MUM1	84939	hgsc.bcm.edu	37	19	1360675	1360675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MUM1,NS,malignant_melanoma,0,1	MUM1	NM_032853	exon5	c.C758T	p.A253V	GGGCAGCCCCGTC	.	48	3	24	0	.	0
SPATA4	132851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177114178	177114178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_144644	exon3	c.C398T	p.T133I	TGAATTGTTCCAT	.	66	22	121	0	.	.
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	81212524	81212524	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_018689	exon14	c.T1887A	p.L629L	CTGTCTTGGCCTC	.	49	4	39	0	.	.
TAS2R31	259290	hgsc.bcm.edu;broad.mit.edu	37	12	11183199	11183199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_176885	exon1	c.A736C	p.M246L	ATATCATTATGGA	.	96	4	117	0	.	.
RNF180	285671	hgsc.bcm.edu;bcgsc.ca	37	5	63621158	63621158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001113561	exon6	c.G1373T	p.R458L	GCTTACGGACTCT	.	82	4	77	0	.	.
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	3003	3003	+	RNA	SNP	A	A	G	rs28597879	bycluster	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	ATCAGGACATCCC	.	66	51	21	0	.	.
TJP1	7082	hgsc.bcm.edu;bcgsc.ca	37	15	30011982	30011982	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_003257	exon20	c.A3002C	p.K1001T	GGTACCTTTGTTG	.	50	4	41	0	.	.
KIAA1614	57710	hgsc.bcm.edu	37	1	180886014	180886014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	KIAA1614,NS,carcinoma,0,1	KIAA1614	NM_020950	exon2	c.C775A	p.L259M	ACATCCCTGACCT	.	40	2	27	0	.	0
TDRD6	221400	hgsc.bcm.edu	37	6	46657979	46657979	+	Missense_Mutation	SNP	A	A	G	rs199792181		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.,2	.	NM_001168359	exon1	c.A2114G	p.E705G	CTGGAGAAGGAGA	.	35	3	42	1	.	205
COX2	5743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	7854	7854	+	Missense_Mutation	SNP	T	T	C	rs199751156	bycluster;alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	ENST00000361739	exon1	c.T269C	p.V90A	ACGAGGTCAACGA	.	572	487	201	0	.	.
PEPD	5184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	33953903	33953903	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_000285	exon9	c.A669C	p.E223D	TTACCTTTCCAAC	.	49	20	72	0	.	.
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1273681	1273681	+	Missense_Mutation	SNP	C	C	T	rs377111871		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_002458	exon32	c.C14972T	p.P4991L	CCCCACCGCCAGT	.	48	18	44	0	.	.
MLL3	58508	hgsc.bcm.edu	37	7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	rs4024337		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MLL3_ENST00000355193,NS,carcinoma,0,10	MLL3_ENST00000355193	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	103	6	88	2	.	0
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16451813	16451813	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004431	exon17	c.A2828T	p.D943V	TTGATGTCGCTGT	.	30	18	37	0	.	.
MUC21	394263	hgsc.bcm.edu	37	6	30954618	30954618	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MUC21,rectum,carcinoma,0,2	MUC21	NM_001010909	exon2	c.T666C	p.A222A	TGGGGCTGGCACA	.	73	4	78	1	.	0
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	10624541	10624541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_030760	exon2	c.G1147A	p.G383S	GTGCACCGGGGCT	.	30	5	27	0	.	.
PKD2L1	9033	hgsc.bcm.edu	37	10	102059361	102059361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PKD2L1,colon,carcinoma,0,1	PKD2L1	NM_016112	exon3	c.C464A	p.A155E	AAGTCCGCCATGC	.	37	2	53	0	.	0
TTC28-AS1	284900	hgsc.bcm.edu	37	22	28385466	28385466	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	ACAAAGCCATTTG	.	13	4	32	0	.	.
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1256439	1256439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_002458	exon22	c.T2755G	p.Y919D	TGCGAGTACATCT	.	42	13	33	0	.	.
SLC24A2	25769	hgsc.bcm.edu;bcgsc.ca	37	9	19786216	19786216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001193288	exon1	c.C649A	p.L217I	CAAAGAGGATGTT	.	34	4	53	0	.	.
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43244513	43244513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_174916	exon45	c.G4969A	p.A1657T	GAAGTGCGTGAAA	.	36	11	31	0	.	.
DNA2	1763	hgsc.bcm.edu	37	10	70209804	70209804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	DNA2L,NS,carcinoma,0,2	DNA2L	NM_001080449	exon6	c.C920A	p.S307Y	TCAATAGAATTTG	.	32	2	72	0	.	0
CD300C	10871	hgsc.bcm.edu	37	17	72540765	72540765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CD300C,caecum,carcinoma,0,1	CD300C	NM_006678	exon2	c.A383T	p.E128V	GACACCTCAACCT	.	67	3	58	0	.	0
MUC4	4585	hgsc.bcm.edu	37	3	195508971	195508971	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.A9480G	p.S3160S	GGATGCTGAGGAA	.	83	6	87	1	.	0
ACIN1	22985	hgsc.bcm.edu	37	14	23540342	23540342	+	Missense_Mutation	SNP	G	G	T	rs111237085	alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001164817	exon2	c.C15A	p.S5R	TTCTTTGCTTTCT	.	77	3	62	0	.	.
TRPC6	7225	hgsc.bcm.edu	37	11	101343020	101343020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	TRPC6,colon,carcinoma,0,1	TRPC6	NM_004621	exon8	c.C2053A	p.L685I	CAGAAAGTCCAAA	.	50	2	48	0	.	0
RNF208	727800	hgsc.bcm.edu;broad.mit.edu	37	9	140114946	140114946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_031297	exon1	c.G719T	p.R240L	TACTGCCGGAAGG	.	7	5	8	0	.	.
RPS6KC1	26750	hgsc.bcm.edu	37	1	213415426	213415426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	RPS6KC1,NS,carcinoma,0,1	RPS6KC1	NM_012424	exon11	c.G2607T	p.K869N	GACTAAGGGTGAA	.	48	2	41	0	.	0
FOXO3	2309	hgsc.bcm.edu	37	6	108985269	108985269	+	Silent	SNP	C	C	T	rs34079373		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	FOXO3,NS,carcinoma,0,1	FOXO3	NM_001455	exon2	c.C1233T	p.S411S	GCGGAGCTCTAGC	.	25	2	41	1	.	0
SNED1	25992	hgsc.bcm.edu	37	2	241976736	241976736	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001080437	exon6	c.C1011T	p.C337C	CCAGTGCCCGGCT	.	82	4	68	0	.	.
R3HCC1L	27291	hgsc.bcm.edu	37	10	99968068	99968068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	C10orf28,NS,carcinoma,0,1	C10orf28	NM_001256620	exon4	c.C197A	p.P66Q	ACAAACCGGAGGC	.	43	2	59	0	.	0
WDR7	23335	hgsc.bcm.edu	37	18	54424284	54424284	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	WDR7,NS,carcinoma,0,1	WDR7	NM_052834	exon15	c.C2460T	p.C820C	AGTTTGCCTGGAT	.	48	2	52	0	.	0
C2orf16	84226	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	27799950	27799950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_032266	exon1	c.G511T	p.G171C	TATAAAGGCATAG	.	42	4	59	0	.	.
LPHN3	23284	hgsc.bcm.edu	37	4	62845391	62845391	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	LPHN3_ENST00000514591,right_upper_lobe,carcinoma,0,3	LPHN3_ENST00000514591	NM_015236	exon15	c.G2712T	p.G904G	CCGGGGGCTCCAG	.	48	2	52	0	.	0
DPP4	1803	hgsc.bcm.edu	37	2	162875264	162875264	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	DPP4,NS,carcinoma,-1,2	DPP4	NM_001935	exon16	c.G1395T	p.A465A	ATACTTCGCCTCT	.	30	2	34	0	.	-1
HSF5	124535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56540279	56540279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001080439	exon4	c.C1406T	p.P469L	TCAACAGGCTGAG	.	49	22	35	0	.	.
PIGR	5284	hgsc.bcm.edu	37	1	207107996	207107996	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PIGR,NS,carcinoma,0,2	PIGR	NM_002644	exon6	c.G1474T	p.E492X	ATTTCTCGTACGA	.	35	2	16	0	.	0
TRIP13	9319	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	908545	908545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004237	exon9	c.G835A	p.A279T	GTCAATGCTGTCT	.	35	4	35	0	.	.
CABYR	26256	hgsc.bcm.edu	37	18	21736349	21736349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CABYR,NS,carcinoma,0,1	CABYR	NM_012189	exon4	c.C884A	p.S295Y	TATCATCTGTCTA	.	46	2	49	0	.	0
NEUROD1	4760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182542721	182542721	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_002500	exon2	c.G867A	p.P289P	GGCGGACGGTTCG	.	22	5	29	0	.	.
TRAP1	10131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3729751	3729751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_016292	exon5	c.A512G	p.N171S	CCCAGGTTGGACA	.	32	11	22	0	.	.
ZNF728	388523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	23170160	23170160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001267716	exon3	c.G176A	p.G59E	TCTTTTCCTTGCT	.	86	24	98	0	.	.
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217315693	217315693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_014140	exon12	c.G1976A	p.R659H	AGCAGCGCAAGAT	.	28	11	18	0	.	.
KLHL11	55175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40010293	40010293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_018143	exon2	c.A1826G	p.D609G	ACATCATCTTTGT	.	46	21	58	0	.	.
DMBT1	1755	hgsc.bcm.edu	37	10	124390549	124390549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	DMBT1_ENST00000368915,NS,carcinoma,0,1	DMBT1_ENST00000368915	NM_007329	exon46	c.G5711T	p.G1904V	ACCATGGTGGCAC	.	66	3	99	1	.	0
MUC21	394263	hgsc.bcm.edu	37	6	30954918	30954918	+	Silent	SNP	A	A	G	rs79264512		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MUC21,NS,carcinoma,0,1	MUC21	NM_001010909	exon2	c.A966G	p.T322T	CAGCACAACCTCC	.	56	6	48	1	.	0
PDXDC2P	283970	hgsc.bcm.edu	37	16	70013392	70013392	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	ATGCCCCCTGCAA	.	58	4	85	0	.	.
OR4Q3	441669	hgsc.bcm.edu	37	14	20216038	20216038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	OR4Q3,NS,carcinoma,0,1	OR4Q3	NM_172194	exon1	c.G452T	p.C151F	GCTGGTGTGGGGG	.	71	3	78	0	.	0
IDE	3416	hgsc.bcm.edu	37	10	94228698	94228698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	IDE,colon,carcinoma,0,1	IDE	NM_004969	exon19	c.C2258T	p.A753V	GTATGAGCATGTT	.	47	2	45	0	.	0
PKNOX2	63876	hgsc.bcm.edu	37	11	125280125	125280125	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PKNOX2,larynx,carcinoma,0,1	PKNOX2	NM_022062	exon8	c.G622T	p.G208X	ATGTCCGGAGTCT	.	22	2	23	0	.	0
CST13P	164380	hgsc.bcm.edu;bcgsc.ca	37	20	23514887	23514887	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	CAATTTGCAAGAA	.	83	4	82	0	.	.
KANK1	23189	hgsc.bcm.edu	37	9	732477	732477	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	KANK1_ENST00000382303,NS,carcinoma,0,4	KANK1_ENST00000382303	NM_001256876	exon10	c.G3105A	p.E1035E	AGAAGAGGAGGAG	.	55	3	51	1	.	0
ATP7B	540	hgsc.bcm.edu	37	13	52549277	52549277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ATP7B,NS,carcinoma,0,1	ATP7B	NM_001243182	exon2	c.C79A	p.R27S	AGGCACGGGTAGG	.	31	2	31	0	.	0
DLK1	8788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	101201136	101201136	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_003836	exon5	c.A1055C	p.Q352P	TGCTTCAGTACAA	.	17	9	25	0	.	.
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	32361350	32361350	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_004006	exon40	c.T5640A	p.Y1880X	GTACTGATACCAC	.	17	13	23	0	.	.
LRTM2	654429	hgsc.bcm.edu	37	12	1943445	1943445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001039029	exon5	c.A671G	p.D224G	GCTTGGACCAGCT	.	92	2	37	0	.	.
ADCY10	55811	hgsc.bcm.edu	37	1	167780114	167780114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ADCY10,NS,carcinoma,0,1	ADCY10	NM_018417	exon32	c.C4519A	p.P1507T	AGACAGGGCCAGT	.	52	3	68	0	.	0
CCDC141	285025	hgsc.bcm.edu	37	2	179733971	179733971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CCDC141_ENST00000420890,NS,carcinoma,0,2	CCDC141_ENST00000420890	NM_173648	exon15	c.C2267A	p.A756D	ACAGGGGCTCCTC	.	42	2	55	0	.	0
FEZ1	9638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	125359627	125359627	+	Missense_Mutation	SNP	C	C	G	rs138856048	alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_022549	exon2	c.G47C	p.R16P	GAGGGTCGAAGGT	.	46	22	35	0	.	.
SP140	11262	hgsc.bcm.edu	37	2	231159016	231159016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	SP140_ENST00000392045,NS,carcinoma,0,1	SP140_ENST00000392045	NM_007237	exon21	c.C1999T	p.R667C	AGAATACGTTACA	.	68	3	102	0	.	0
ATM	472	hgsc.bcm.edu	37	11	108218091	108218091	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ATM_ENST00000278616,colon,carcinoma,0,6	ATM_ENST00000278616	NM_000051	exon59	c.A8670G	p.L2890L	AGATCTAGGTAAG	.	37	2	30	0	.	0
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	179983051	179983051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_014810	exon10	c.C1463T	p.S488L	GAAACTCAGAACG	.	87	29	98	0	.	.
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578509	7578509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	TP53_ENST00000545858,NS,carcinoma,+1,28	TP53_ENST00000545858	NM_000546	exon5	c.T421C	p.C141R	CAGGGCAGGTCTT	.	13	8	13	0	.	+1
RGS8	85397	hgsc.bcm.edu;bcgsc.ca	37	1	182640815	182640815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_033345	exon2	c.G57T	p.Q19H	CATGGCCTGAGGG	.	59	4	77	0	.	.
C19orf26	255057	hgsc.bcm.edu	37	19	1235857	1235857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_152769	exon3	c.G166A	p.V56M	CCCCCACGAACAG	.	59	4	36	0	.	.
NKX2-5	1482	hgsc.bcm.edu	37	5	172659642	172659642	+	Missense_Mutation	SNP	G	G	A	rs371380388	alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	NKX2-5,NS,carcinoma,+1,1	NKX2-5	NM_004387	exon2	c.C905T	p.A302V	TGAACCGCATTCA	.	35	2	39	0	.	+1
CPD	1362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28772983	28772983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001304	exon12	c.T2818C	p.S940P	GACTTATCAGAGT	.	43	16	54	0	.	.
ZNF441	126068	hgsc.bcm.edu	37	19	11891967	11891967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ZNF441_ENST00000357901,NS,carcinoma,0,2	ZNF441_ENST00000357901	NM_152355	exon4	c.G1328T	p.G443V	ACACTGGGGAGAG	.	33	2	57	0	.	0
UBN2	254048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138978118	138978118	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_173569	exon16	c.C3810G	p.P1270P	GTTTCCCTTGGAG	.	50	16	59	0	.	.
LSR	51599	hgsc.bcm.edu	37	19	35757268	35757268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	LSR,NS,carcinoma,0,2	LSR	NM_205834	exon6	c.C929T	p.A310V	TGTATGCCGCCGG	.	47	2	41	0	.	0
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49918486	49918486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_023071	exon13	c.A1133G	p.Y378C	ACAGCTATTCGAC	.	16	7	22	0	.	.
ABCB8	11194	hgsc.bcm.edu	37	7	150733641	150733641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.,1	.	NM_007188	exon9	c.G1122T	p.L374F	GGTCTTGGGTACC	.	48	2	21	0	.	65
NAV3	89795	hgsc.bcm.edu	37	12	78225326	78225326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	NAV3,NS,carcinoma,0,1	NAV3	NM_014903	exon1	c.C85A	p.L29I	CCAAATCTTGGCA	.	46	2	32	0	.	0
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35082738	35082738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_005159	exon7	c.C1009T	p.R337C	ATTTACGCTCAGG	.	49	24	61	0	.	.
GATA3	2625	hgsc.bcm.edu;bcgsc.ca	37	10	8100409	8100409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_002051	exon3	c.G383T	p.G128V	CCCCGGGGCCCCT	.	106	5	110	0	.	.
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	51640334	51640334	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001005333	exon6	c.A1621T	p.K541X	ATGCTTAAGGACT	.	16	8	24	0	.	.
PHYH	5264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13337503	13337503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_006214	exon3	c.C238T	p.R80C	GAAAGCGTTGAAT	.	150	40	132	0	.	.
UNC13C	440279	hgsc.bcm.edu	37	15	54592537	54592537	+	Missense_Mutation	SNP	C	C	T	rs370227736		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	UNC13C_ENST00000260323,colon,carcinoma,0,2	UNC13C_ENST00000260323	NM_001080534	exon11	c.C4234T	p.R1412C	GCTATGCGTTATG	.	65	3	82	0	.	0
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	88886183	88886183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	DCAF4L2,NS,carcinoma,0,1	DCAF4L2	NM_152418	exon1	c.C17T	p.P6L	AGTCGCGGTCTTT	.	30	11	30	0	.	0
ETS1	2113	hgsc.bcm.edu	37	11	128350152	128350152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ETS1_ENST00000392668,NS,carcinoma,0,2	ETS1_ENST00000392668	NM_001143820	exon8	c.C1057T	p.R353W	GGTCCCGCACATA	.	40	2	32	0	.	0
TECTA	7007	hgsc.bcm.edu	37	11	120979961	120979961	+	Silent	SNP	C	C	T	rs142064539		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	TECTA,caecum,carcinoma,0,1	TECTA	NM_005422	exon3	c.C240T	p.S80S	AGTGAGCCAGTTC	.	48	2	40	0	0.000	0
BLK	640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11412317	11412317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001715	exon7	c.C538T	p.R180C	AAGATCCGCTGCC	.	39	16	46	0	.	.
PCDHB15	56121	hgsc.bcm.edu	37	5	140627110	140627110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PCDHB15,NS,carcinoma,+1,1	PCDHB15	NM_018935	exon1	c.C1964T	p.T655I	CGGCCACCGCCAC	.	44	2	53	0	.	+1
FAM86DP	692099	hgsc.bcm.edu	37	3	75476590	75476590	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ENSG00000163612,lower_third,carcinoma,0,1	ENSG00000163612	.	.	.	.	CAATGACAACATC	.	12	3	70	0	.	0
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	86010630	86010630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001167675	exon8	c.T803C	p.V268A	AACCTGTTTTGTG	.	41	27	94	0	.	.
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154836538	154836538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_007287	exon8	c.G658A	p.D220N	TAGATTGACCAAC	.	97	36	97	0	.	.
ZNF691	51058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	43317239	43317239	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001242739	exon4	c.A703T	p.S235C	GGGAAGAGCTTCA	.	14	4	12	0	.	.
NF1P2	440225	hgsc.bcm.edu	37	15	21129136	21129136	+	RNA	SNP	T	T	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	TCCGATTCTAGGT	.	68	45	65	0	.	.
SMARCA5	8467	hgsc.bcm.edu	37	4	144460080	144460080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	SMARCA5,NS,carcinoma,0,1	SMARCA5	NM_003601	exon13	c.C1759A	p.L587I	GTAGATCTTCAGG	.	46	2	40	0	.	0
OR5H6	79295	hgsc.bcm.edu	37	3	97983496	97983496	+	Missense_Mutation	SNP	C	C	T	rs145155372	bycluster	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001005479	exon1	c.C368T	p.T123I	TAACCACTGTAAC	.	61	4	40	0	.	.
ZNF525	170958	hgsc.bcm.edu;bcgsc.ca	37	19	53879488	53879488	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	CCCCCGTACCTAA	.	87	23	87	0	.	.
HSH2D	84941	hgsc.bcm.edu	37	19	16268032	16268032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_032855	exon8	c.C487T	p.P163S	CCAAAGCCAGTCC	.	71	4	70	0	.	.
KIAA1432	57589	hgsc.bcm.edu;bcgsc.ca	37	9	5745941	5745941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001206557	exon11	c.C1106A	p.A369E	GGGGTGCAGAAGG	.	69	4	63	0	.	.
CEP97	79598	hgsc.bcm.edu;bcgsc.ca	37	3	101451412	101451412	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_024548	exon6	c.C642A	p.I214I	ATCCATCCCAGGA	.	69	4	69	0	.	.
LMNB1	4001	hgsc.bcm.edu;bcgsc.ca	37	5	126156635	126156635	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_005573	exon7	c.G1194T	p.V398V	CCGTGTGACAGTA	.	54	4	60	0	.	.
FAM71F2	346653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128315770	128315770	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001012454	exon2	c.T222C	p.S74S	AGGGTCTGCCACC	.	40	18	31	0	.	.
CPLX4	339302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	56963944	56963944	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CPLX4,NS,haematopoietic_neoplasm,0,1	CPLX4	NM_181654	exon3	c.T469A	p.C157S	CGGAACACTTCTG	.	23	4	24	0	.	0
CAPN12	147968	hgsc.bcm.edu	37	19	39234742	39234742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_144691	exon1	c.G64A	p.G22R	GGCGCCCGGCTCC	.	87	4	69	0	.	.
PCDHB5	26167	hgsc.bcm.edu	37	5	140517100	140517100	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	PCDHB5,face,carcinoma,0,1	PCDHB5	NM_015669	exon1	c.C2084A	p.S695X	TGGCCTCGGTGTC	.	46	2	64	0	.	0
CHI3L1	1116	broad.mit.edu;bcgsc.ca	37	1	203148988	203148988	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CHI3L1,colon,carcinoma,-2,1	CHI3L1	NM_001276	exon9	c.C912T	p.R304R	GGCTCCGCGGAGG	.	19	8	24	0	.	51
ROR1	4919	broad.mit.edu	37	1	64603123	64603123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	ROR1	NM_001083592	exon5	c.G554A	p.R185H	GCAACCGCACCGT	.	51	3	61	0	.	113
CD81	975	broad.mit.edu	37	11	2416708	2416708	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	CD81	NM_004356	exon5	c.C417T	p.D139D	TGATGACGCCAAC	.	41	3	39	0	.	11
MYEOV	26579	broad.mit.edu	37	11	69063836	69063836	+	Missense_Mutation	SNP	C	C	A	rs147884839	bycluster	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	MYEOV,NS,haematopoietic_neoplasm,0,3	MYEOV	NM_138768	exon3	c.C919A	p.L307I	CTCCTCCTCATCA	.	25	3	20	0	C|1.000;A|0.000	42
GABRB3	2562	broad.mit.edu	37	15	26793037	26793037	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	GABRB3	NM_021912	exon9	c.T1325G	p.L442R	TCGGTTAGATCAG	.	23	3	27	0	.	338
.	0	broad.mit.edu	37	16	74629	74629	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	TCATGCGCCATCA	.	9	3	10	0	.	.
ZNF469	84627	broad.mit.edu	37	16	88500278	88500278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	ZNF469	NM_001127464	exon2	c.G6316T	p.D2106Y	CGTGAAGACCCAC	.	21	3	23	0	.	121
AMZ2P1	0	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	TTCCACAAGTCTC	.	95	3	77	0	.	.
LRRC48	83450	broad.mit.edu	37	17	17907739	17907739	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	LRRC48	NM_031294	exon10	c.C1062T	p.C354C	AGAATGCAGTGCT	.	42	3	54	0	.	49
TLK2	11011	broad.mit.edu	37	17	60598179	60598179	+	Missense_Mutation	SNP	G	G	A	rs200158456		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	TLK2_ENST00000346027,NS,carcinoma,0,1	TLK2	NM_001112707	exon3	c.G127A	p.G43R	AGCGTCGGATCCT	.	83	3	71	1	.	223
TRAF4	9618	broad.mit.edu	37	17	27076180	27076180	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	TRAF4	NM_004295	exon7	c.T998G	p.F333C	AGTGCTTCAGCCC	.	51	3	41	0	.	20
ZNF536	9745	broad.mit.edu	37	19	30934714	30934714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	ZNF536,NS,carcinoma,-1,1	ZNF536	NM_014717	exon2	c.C245T	p.A82V	AGATGGCGCTCCT	.	65	5	55	0	.	424
SNRNP200	23020	broad.mit.edu	37	2	96961292	96961292	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	SNRNP200	NM_014014	exon14	c.G1776A	p.K592K	GTCCCACTTCTCG	.	4	2	15	0	.	195
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	NCOA6,NS,carcinoma,0,18	NCOA6	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	33	6	24	2	.	219
RBM15B	29890	broad.mit.edu;bcgsc.ca	37	3	51430852	51430853	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	RBM15B	NM_013286	exon1	c.2022_2023del	p.674_675del	TGCAGACTCTTCC	.	12	5	22	0	.	47
FBN2	2201	broad.mit.edu	37	5	127624882	127624882	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	FBN2	NM_001999	exon52	c.G6574T	p.G2192X	AAGATCCGTCGGT	.	16	4	18	0	.	858
AASS	10157	broad.mit.edu	37	7	121716630	121716630	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	AASS	NM_005763	exon24	c.C2694A	p.P898P	TGAAAAGGGCCCC	.	79	3	70	0	.	123
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	CCGGGGTCCTTGA	.	29	4	27	0	T|0.500;G|0.500	.
GTF2IRD2P1	0	broad.mit.edu	37	7	72664015	72664015	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	CACCCCCGGGGCA	.	11	3	15	0	.	.
PCLO	27445	broad.mit.edu	37	7	82595713	82595713	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	PCLO	NM_014510	exon4	c.G3391C	p.G1131R	TGGGTCCTGATGG	.	23	3	27	0	.	1506
PCDH11X	27328	broad.mit.edu	37	X	91133148	91133148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	PCDH11X	NM_001168363	exon2	c.G1909A	p.E637K	AAACAAGAATCTT	.	46	31	96	1	.	714
.	0	broad.mit.edu	37	Y	7636011	7636011	+	RNA	DEL	A	A	-	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	CCATCTAAAAAAA	.	6	2	5	0	.	.
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238289918	238289918	+	Missense_Mutation	SNP	G	G	A	rs369379463	alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	COL6A3	NM_004369	exon5	c.C1537T	p.R513W	TTTTCCGCACAGC	.	27	4	20	0	.	608
ZFYVE19	84936	ucsc.edu	37	15	41099910	41099910	+	Silent	SNP	A	A	G	rs62018606		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	ZFYVE19	NM_001077268	exon1	c.A123G	p.A41A	CGGGGCAGGGCAG	.	21	7	12	0	.	31
SLC16A11	162515	ucsc.edu;bcgsc.ca	37	17	6946310	6946310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	SLC16A11	NM_153357	exon2	c.C357A	p.F119L	GAAGACGAAGCCC	.	44	4	47	0	.	25
CDC42EP4	23580	ucsc.edu	37	17	71282351	71282351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	CDC42EP4	NM_012121	exon2	c.C289T	p.R97W	GCTCCCGCTCCCC	.	41	4	34	0	.	19
CASS4	57091	ucsc.edu	37	20	55033541	55033541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CASS4,colon,carcinoma,+1,1	CASS4	NM_020356	exon6	c.C2099T	p.A700V	AGCCCGCGGAGAT	.	39	4	34	0	.	121
CNN3	1266	bcgsc.ca	37	1	95364930	95364930	+	Silent	SNP	G	A	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	CNN3	NM_001839	exon6	c.C645T	p.S215S	TACCTGGCTGGCT	.	64	4	56	0	.	23
RASAL2	9462	bcgsc.ca	37	1	178408564	178408564	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	RASAL2	NM_170692	exon6	c.G682A	p.G228R	TCTCGTGGGCTGC	.	27	3	60	0	.	334
.	0	bcgsc.ca	37	1	242220951	242220951	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	AGCCGGGCACCCT	.	35	5	26	0	.	.
GPR160	26996	bcgsc.ca	37	3	169802265	169802265	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	GPR160	NM_014373	exon4	c.G505T	p.A169S	CAGAATGCTTATT	.	25	3	27	0	.	26
TRMT10A	93587	bcgsc.ca	37	4	100477351	100477351	+	Silent	SNP	C	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	NM_001134666	exon5	c.G447A	p.Q149Q	TTTCAGCTGGCCT	.	84	4	87	0	.	.
.	0	bcgsc.ca	37	4	189660032	189660032	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	TAGGTGGCCTTAG	.	31	17	61	0	.	.
.	136157	bcgsc.ca	37	7	124116783	124116783	+	RNA	SNP	T	G	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	CAGTGGTGGAAGA	.	128	6	92	0	.	.
LOC392232	0	bcgsc.ca	37	8	73124317	73124317	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	AGATGGGCTGCTA	.	69	4	44	0	.	.
WDR37	22884	bcgsc.ca	37	10	1170283	1170283	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	WDR37	NM_014023	exon12	c.C1229T	p.A410V	ACTCTGCCATTAA	.	61	4	43	0	.	52
DEAF1	10522	bcgsc.ca	37	11	674557	674557	+	Silent	SNP	G	A	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	DEAF1	NM_021008	exon10	c.C1482T	p.H494H	GTCAGCGTGGATC	.	25	3	41	0	.	47
.	120824	bcgsc.ca	37	11	49000600	49000600	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	AAAATGCAACCAT	.	68	51	162	0	.	.
RPLP0P2	113157	bcgsc.ca	37	11	61405178	61405178	+	RNA	SNP	T	A	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	CTTCTTTAAAAAA	.	130	7	107	3	.	.
.	727828	bcgsc.ca	37	11	89515303	89515303	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	GTTATTGATTCTG	.	156	37	164	0	.	.
.	0	bcgsc.ca	37	12	8568398	8568398	+	RNA	SNP	C	T	T	rs9669230	by2hit2allele;alternate_allele	TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	AAAAACCAGCCCT	.	43	21	49	0	.	.
.	0	bcgsc.ca	37	15	20467206	20467206	+	RNA	SNP	A	G	G	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	GTCATCAGCAGTT	.	96	17	82	1	.	.
SSTR5-AS1	146336	bcgsc.ca	37	16	1115568	1115568	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	GGGCTGGGGGCAA	.	62	5	59	0	.	.
.	85343	bcgsc.ca	37	17	39228370	39228370	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	CCCTGTGCTGCCC	.	14	3	26	0	.	.
CDC27	996	bcgsc.ca	37	17	45234386	45234386	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	CDC27_ENST00000531206,NS,carcinoma,0,8	CDC27	NM_001114091	exon7	c.C735A	p.V245V	CAGTGGGACAGTA	.	98	9	119	0	.	337
.	0	bcgsc.ca	37	X	65176467	65176467	+	RNA	SNP	G	C	C	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	.	.	.	.	.	GACCTCGGTAACT	.	19	7	26	0	.	.
HDX	139324	bcgsc.ca	37	X	83581279	83581279	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA2I-01A-32D-A417-09	TCGA-W5-AA2I-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d35cc49-75c0-4c1d-8319-d6812d7a5d08	2cb8b919-012e-4f36-9620-0517dd7b02ca	.	HDX	NM_144657	exon9	c.G1854T	p.E618D	CTCGAGCTCATTT	.	30	3	45	0	.	124
