Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ARMC5	79798	hgsc.bcm.edu	37	16	31471168	31471169	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_024742	exon1	c.323_324insC	p.G108fs	CGTCGGGCCCCGC	.	36	10	43	0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9068625	9068625	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_024690	exon3	c.18822delT	p.R6274fs	GGTGAACGAGTCA	.	43	16	48	0	.	.
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6678260	6678260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_000064	exon40	c.A4753G	p.I1585V	GGCTGATGAACGT	.	18	8	36	0	.	.
OR52E8	390079	hgsc.bcm.edu	37	11	5878458	5878458	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	OR52E8,NS,carcinoma,0,1	OR52E8	NM_001005168	exon1	c.C475T	p.L159L	TGTACAGGCTCCT	.	17	2	44	0	.	0
TLN2	83660	hgsc.bcm.edu	37	15	62939540	62939540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	TLN2,bladder,carcinoma,0,1	TLN2	NM_015059	exon1	c.C31T	p.R11C	TGTGTGCGCCACT	.	27	3	47	0	.	0
FER1L5	90342	hgsc.bcm.edu	37	2	97370411	97370411	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	FER1L5,colon,carcinoma,0,1	FER1L5	NM_001113382	exon52	c.T6264C	p.L2088L	AGAACTTCCAGCC	.	36	2	37	0	.	0
CADM1	23705	hgsc.bcm.edu	37	11	115049489	115049489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CADM1,NS,carcinoma,0,1	CADM1	NM_014333	exon9	c.G1085T	p.R362L	CCTGCTCGGGAAT	.	25	2	47	0	.	0
SEC1P	653677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	49183517	49183517	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	GCTGTACGCCCTG	.	43	19	75	0	.	.
VPS8	23355	hgsc.bcm.edu	37	3	184682319	184682319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	VPS8,colon,carcinoma,0,1	VPS8	NM_001009921	exon37	c.C3247A	p.H1083N	GATATTCATGGTG	.	44	2	77	0	.	0
LINC00710	254312	hgsc.bcm.edu	37	10	10988052	10988052	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	GGGATGGCATTCC	.	79	4	90	0	.	.
HLA-DRA	3122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32410347	32410347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	HLA-DRA,colon,carcinoma,0,1	HLA-DRA	NM_019111	exon2	c.C205T	p.R69W	GTCTGGCGGCTTG	.	62	20	72	0	.	0
SOGA1	140710	hgsc.bcm.edu	37	20	35445812	35445812	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_080627	exon4	c.C1132T	p.Q378X	TTACCTGCACCAA	.	54	4	67	0	.	.
SYTL3	94120	hgsc.bcm.edu	37	6	159104022	159104022	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SYTL3,NS,carcinoma,0,1	SYTL3	NM_001009991	exon7	c.394+1G>T	.	CTGGAGGTAAATG	.	58	3	102	0	.	0
SLC7A3	84889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70149683	70149683	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_032803	exon2	c.C165A	p.G55G	CACCTCGCCAGCT	.	13	13	36	0	.	.
HEPHL1	341208	hgsc.bcm.edu	37	11	93806546	93806546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	HEPHL1,NS,carcinoma,0,1	HEPHL1	NM_001098672	exon8	c.G1445T	p.S482I	TCTATAGCATTTT	.	34	2	74	0	.	0
ABCA8	10351	hgsc.bcm.edu	37	17	66877304	66877304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ABCA8,NS,carcinoma,0,1	ABCA8	NM_007168	exon30	c.C3875A	p.S1292Y	TTAATGGATGTGC	.	48	2	61	0	.	0
KIAA1549L	25758	hgsc.bcm.edu	37	11	33589742	33589742	+	Missense_Mutation	SNP	G	G	T	rs376568090	alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	C11orf41_ENST00000321505,right_upper_lobe,carcinoma,0,2	C11orf41_ENST00000321505	NM_012194	exon8	c.G3308T	p.R1103L	TTAAACGGGCCAC	.	41	2	80	0	.	0
ANKRD44	91526	hgsc.bcm.edu	37	2	198051784	198051784	+	Missense_Mutation	SNP	C	C	A	rs149690877	bycluster;alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ANKRD44_ENST00000409919,NS,carcinoma,0,2	ANKRD44_ENST00000409919	NM_153697	exon2	c.G74T	p.R25L	AGCATCCGGATCT	.	41	2	68	0	.	0
MOXD1	26002	hgsc.bcm.edu	37	6	132618355	132618355	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	MOXD1_ENST00000336749,rectum,carcinoma,0,2	MOXD1_ENST00000336749	NM_015529	exon12	c.C1779G	p.F593L	GATGGAGAAATCT	.	37	2	68	0	.	0
SEMA4C	54910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	97530504	97530504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_017789	exon9	c.G900A	p.M300I	GGTGTGCATCGCC	.	27	4	65	0	.	.
MMP8	4317	hgsc.bcm.edu	37	11	102593358	102593358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	MMP8,shoulder,malignant_melanoma,0,1	MMP8	NM_002424	exon2	c.C149A	p.S50Y	CTTGTAGACTGAT	.	37	2	67	0	.	0
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30686282	30686282	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001024847	exon3	c.G213A	p.K71K	AGTCAAGTTTCCA	.	32	11	52	0	.	.
CDH9	1007	hgsc.bcm.edu	37	5	26885775	26885775	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CDH9,NS,carcinoma,0,1	CDH9	NM_016279	exon11	c.C1830A	p.G610G	GCTCAGGCCGGCT	.	28	2	64	0	.	0
TTN	7273	hgsc.bcm.edu	37	2	179447086	179447086	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	TTN_ENST00000359218,NS,carcinoma,0,5	TTN_ENST00000359218	NM_001267550	exon314	c.G66097T	p.E22033X	TATTTTCAGCACA	.	49	2	84	0	.	0
C16orf86	388284	hgsc.bcm.edu;bcgsc.ca	37	16	67702300	67702300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001012984	exon4	c.C751T	p.P251S	GCTTTGCCCTGTC	.	52	4	59	0	.	.
DST	667	hgsc.bcm.edu	37	6	56401599	56401599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	DST_ENST00000370769,NS,haematopoietic_neoplasm,0,2	DST_ENST00000370769	NM_015548	exon43	c.G8879T	p.R2960L	TTCCACCGTGCAT	.	49	2	76	0	.	0
SPAG9	9043	hgsc.bcm.edu	37	17	49059961	49059961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SPAG9_ENST00000262013,NS,carcinoma,0,2	SPAG9_ENST00000262013	NM_001130528	exon25	c.C3161A	p.T1054N	ACCACAGTCATGC	.	51	3	75	1	.	0
ZNF638	27332	hgsc.bcm.edu	37	2	71661914	71661914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_014497	exon28	c.G5914T	p.A1972S	AATGAGGCTGAAG	.	92	4	140	0	.	.
C1orf173	127254	hgsc.bcm.edu	37	1	75038477	75038477	+	Missense_Mutation	SNP	C	C	T	rs200414564	bycluster;alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	C1orf173,NS,carcinoma,0,1	C1orf173	NM_001002912	exon14	c.G2917A	p.A973T	GAATTGCCTCTTC	.	19	2	40	0	.	0
BRD1	23774	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	50197977	50197977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_014577	exon2	c.C1399A	p.Q467K	TCCGCTGAATGGC	.	37	4	54	0	.	.
ZMYM1	79830	hgsc.bcm.edu	37	1	35579573	35579573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ZMYM1,colon,carcinoma,0,1	ZMYM1	NM_024772	exon10	c.G2142T	p.Q714H	TGGCCAGGCCTAT	.	33	2	73	0	.	0
IQCB1	9657	hgsc.bcm.edu	37	3	121508986	121508986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	IQCB1,NS,carcinoma,0,1	IQCB1	NM_001023570	exon11	c.C1063A	p.Q355K	GTCTTTGAAGTTG	.	41	2	75	0	.	0
SLC35F1	222553	hgsc.bcm.edu	37	6	118598679	118598679	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SLC35F1,NS,carcinoma,0,1	SLC35F1	NM_001029858	exon6	c.C817T	p.L273L	AAGGAACTGTTGA	.	39	2	54	0	.	0
ZNF729	100287226	hgsc.bcm.edu	37	19	22498722	22498722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ZNF729,NS,carcinoma,0,1	ZNF729	NM_001242680	exon4	c.C2503T	p.H835Y	TTTAAGCATTTCT	.	59	4	103	0	.	0
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102891358	102891358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001172631	exon6	c.G681T	p.K227N	CTGTAAGCAAAGT	.	41	18	89	0	.	.
PDE1C	5137	hgsc.bcm.edu	37	7	31855651	31855651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	PDE1C_ENST00000396193,NS,malignant_melanoma,0,3	PDE1C_ENST00000396193	NM_001191058	exon16	c.A1880G	p.K627R	GACGTCTTTTTCT	.	37	2	68	0	.	0
REXO2	25996	hgsc.bcm.edu	37	11	114310340	114310340	+	Silent	SNP	C	C	T	rs371745776		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_015523	exon1	c.C90T	p.G30G	AGGTGGCGCAGCC	.	92	3	177	0	.	.
DDOST	1650	hgsc.bcm.edu	37	1	20979149	20979149	+	Silent	SNP	G	G	T	rs138561924	alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	DDOST,colon,carcinoma,0,1	DDOST	NM_005216	exon10	c.C1186A	p.R396R	CTAGCCGGTTGTA	.	22	2	101	0	.	0
NEDD4	4734	hgsc.bcm.edu	37	15	56258687	56258687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_006154	exon2	c.G103A	p.D35N	ATATATCCTTCTT	.	78	2	121	0	.	.
ZNF141	7700	hgsc.bcm.edu	37	4	367218	367218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ZNF141,NS,carcinoma,0,1	ZNF141	NM_003441	exon4	c.G992T	p.R331I	ATAAGAGAATTCA	.	30	2	61	0	.	0
PRR9	574414	hgsc.bcm.edu;bcgsc.ca	37	1	153190821	153190821	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001195571	exon2	c.G201A	p.Q67Q	CCCACAGCAAGGC	.	77	67	48	0	.	.
MFN1	55669	hgsc.bcm.edu	37	3	179082161	179082161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_033540	exon6	c.G613T	p.V205F	GTTTTGGTCGCAA	.	44	4	86	0	.	.
ABHD12B	145447	hgsc.bcm.edu	37	14	51370833	51370833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ABHD12B_ENST00000337334,NS,haematopoietic_neoplasm,0,2	ABHD12B_ENST00000337334	NM_001206673	exon12	c.G984T	p.R328S	AGAGAGGGTCAAG	.	27	2	55	0	.	0
RNF213	57674	hgsc.bcm.edu	37	17	78302195	78302195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	RNF213_ENST00000456466,NS,carcinoma,0,2	RNF213_ENST00000456466	NM_001256071	exon20	c.G3435T	p.E1145D	AAGGGAGGAACTG	.	49	2	84	0	.	0
SIGLEC10	89790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51918278	51918278	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_033130	exon8	c.C1415G	p.P472R	AGAGAGGGGGCCG	.	39	17	64	0	.	.
GLB1L3	112937	hgsc.bcm.edu	37	11	134188524	134188524	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	GLB1L3_ENST00000431683,colon,carcinoma,0,2	GLB1L3_ENST00000431683	NM_001080407	exon19	c.1780-1G>T	.	CTTTCAGAACTGG	.	41	2	77	0	.	0
FAM111A	63901	hgsc.bcm.edu	37	11	58920814	58920814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	FAM111A,NS,carcinoma,0,1	FAM111A	NM_001142520	exon5	c.C1673A	p.A558D	ATGCTGCTGGCTT	.	49	2	100	0	.	0
RMND1	55005	hgsc.bcm.edu;bcgsc.ca	37	6	151738443	151738443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_017909	exon10	c.C1171A	p.Q391K	GGAATTGACACGT	.	63	4	100	0	.	.
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41550703	41550703	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001142446	exon31	c.C3672A	p.A1224A	CCACTGGGCTTGG	.	22	11	59	0	.	.
SVEP1	79987	hgsc.bcm.edu	37	9	113166798	113166798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SVEP1,NS,carcinoma,0,1	SVEP1	NM_153366	exon39	c.G9475A	p.D3159N	ATGTATCTGTATC	.	22	2	62	0	.	0
HMCN1	83872	hgsc.bcm.edu	37	1	185902703	185902703	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_031935	exon11	c.G1575T	p.V525V	CCAAGTGCCTAAC	.	54	4	54	0	.	.
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	101857706	101857706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_020802	exon9	c.T3178C	p.C1060R	AACATCTGCACAC	.	42	19	60	0	.	.
DLG2	1740	hgsc.bcm.edu;bcgsc.ca	37	11	84996326	84996326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001142699	exon4	c.C124A	p.Q42K	ATTTCTGTAAAAC	.	44	4	87	0	.	.
CNGA1	1259	hgsc.bcm.edu	37	4	47939627	47939627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CNGA1,colon,carcinoma,0,1	CNGA1	NM_001142564	exon10	c.C1091A	p.P364Q	ATGTTTGGATAGT	.	57	3	76	0	.	0
CRTAM	56253	hgsc.bcm.edu	37	11	122726478	122726478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CRTAM,caecum,carcinoma,0,2	CRTAM	NM_019604	exon5	c.G566A	p.G189D	CTTATGGCAAAAA	.	43	2	97	0	.	0
UBQLNL	143630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5537616	5537616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_145053	exon1	c.G56A	p.G19D	AGCAGACCTGATG	.	15	9	28	0	.	.
BTBD16	118663	hgsc.bcm.edu	37	10	124036305	124036305	+	Splice_Site	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	BTBD16,bladder,carcinoma,0,1	BTBD16	NM_144587	exon3	c.19-1G>A	.	CAAGCAGCACAAA	.	60	3	66	0	.	0
RUNX3	864	hgsc.bcm.edu	37	1	25229099	25229099	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	RUNX3_ENST00000399916,NS,carcinoma,0,2	RUNX3_ENST00000399916	NM_001031680	exon6	c.G804A	p.T268T	TGGCAGCGTGGGG	.	44	2	136	0	.	0
BIRC7	79444	hgsc.bcm.edu	37	20	61870741	61870741	+	Silent	SNP	G	G	T	rs373757098	alternate_allele	TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	BIRC7,right_upper_lobe,carcinoma,0,1	BIRC7	NM_139317	exon6	c.G681T	p.A227A	GAGGGCGTGGTGG	.	58	3	80	0	.	0
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21437935	21437935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	LAMA3,NS,carcinoma,0,3	LAMA3	NM_001127717	exon33	c.G4264C	p.G1422R	GGGACCGGGGCTT	.	22	8	61	0	.	0
SERINC2	347735	hgsc.bcm.edu	37	1	31905889	31905889	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.,6	.	NM_001199038	exon10	c.A1116G	p.T372T	CGCCACACAGCAG	.	12	1	48	0	.	44
SMARCA2	6595	hgsc.bcm.edu	37	9	2115849	2115849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	SMARCA2_ENST00000349721,NS,carcinoma,0,2	SMARCA2_ENST00000349721	NM_139045	exon25	c.C3484T	p.R1162C	GCTCACCGCATCG	.	29	2	29	0	.	0
TP53BP1	7158	hgsc.bcm.edu	37	15	43708493	43708493	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	TP53BP1,NS,carcinoma,0,1	TP53BP1	NM_001141980	exon22	c.G4803T	p.L1601L	CTCTCTCAGTCTG	.	32	3	49	0	.	0
ELAVL4	1996	hgsc.bcm.edu	37	1	50610818	50610818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ELAVL4_ENST00000357083,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,2	ELAVL4_ENST00000357083	NM_001144775	exon2	c.G250A	p.G84R	CTCTTCGGGAGCA	.	49	2	77	0	.	0
AHCTF1	25909	hgsc.bcm.edu	37	1	247025439	247025439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_015446	exon28	c.C3584T	p.A1195V	GACATGGCCAAAC	.	68	4	57	0	.	.
NR1I3	9970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161206261	161206261	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_005122	exon2	c.A95C	p.K32T	AAACCCTTGCAGC	.	115	11	59	0	.	.
TTN	7273	hgsc.bcm.edu	37	2	179511839	179511839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001267550	exon215	c.G40174T	p.E13392X	CTTTTTCTTCATA	.	94	4	122	0	.	.
FZD8	8325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	35929045	35929045	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_031866	exon1	c.C1313G	p.S438W	TACTGCGAGTAGC	.	17	8	37	0	.	.
C6orf163	206412	hgsc.bcm.edu;ucsc.edu	37	6	88058571	88058571	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001010868	exon2	c.G190T	p.E64X	TTTCAAGAAGATA	.	31	4	54	0	.	.
NEK5	341676	hgsc.bcm.edu	37	13	52684525	52684525	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	NEK5_ENST00000355568,NS,carcinoma,+1,2	NEK5_ENST00000355568	NM_199289	exon7	c.G418T	p.G140X	CCATTCCGTTCTT	.	89	4	131	0	.	+1
PSME4	23198	hgsc.bcm.edu	37	2	54101581	54101581	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	PSME4,NS,carcinoma,0,1	PSME4	NM_014614	exon43	c.C4995A	p.L1665L	GGTCTGGAGGTAG	.	36	2	59	0	.	0
ND4	0	hgsc.bcm.edu;broad.mit.edu	37	MT	11880	11880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	ENST00000361381	exon1	c.A1121G	p.N374S	CTATTAACCTACT	.	6	6	11	0	.	.
RPH3A	22895	hgsc.bcm.edu	37	12	113266158	113266158	+	Missense_Mutation	SNP	G	G	A	rs139903605		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	RPH3A,rectum,carcinoma,0,1	RPH3A	NM_001143854	exon3	c.G35A	p.R12H	CTAACCGTTGGAT	.	43	2	61	0	0.000	0
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	37679178	37679178	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_145203	exon1	c.C216A	p.G72G	GGGGATGCCAACC	.	46	4	77	0	.	.
ASPM	259266	hgsc.bcm.edu;bcgsc.ca	37	1	197071223	197071223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_018136	exon18	c.C7158A	p.H2386Q	AGCAGAGTGTCTT	.	53	4	41	0	.	.
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	83289597	83289597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152588	exon3	c.A655G	p.R219G	TTTCAGAGGAAGA	.	33	15	68	0	.	.
DNMBP	23268	hgsc.bcm.edu	37	10	101716493	101716493	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	DNMBP,caecum,carcinoma,0,2	DNMBP	NM_015221	exon4	c.C738A	p.T246T	CCCATAGGTCCCT	.	43	2	58	0	.	0
OR4K2	390431	hgsc.bcm.edu	37	14	20344676	20344676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	OR4K2,NS,carcinoma,0,1	OR4K2	NM_001005501	exon1	c.G250T	p.D84Y	ATTACAGATTACC	.	43	2	91	0	.	0
CLASP2	23122	hgsc.bcm.edu	37	3	33592749	33592749	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CLASP2,NS,carcinoma,0,1	CLASP2	NM_015097	exon30	c.C3175A	p.R1059R	CCTTCCGAACATC	.	48	2	95	0	.	0
WDR61	80349	hgsc.bcm.edu	37	15	78580718	78580718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	WDR61,colon,carcinoma,0,1	WDR61	NM_025234	exon8	c.C569A	p.A190D	GGCATGGCATGGC	.	27	2	47	0	.	0
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74505136	74505136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001145667	exon15	c.A2164T	p.I722L	TCTGTATCAGACA	.	23	11	49	0	.	.
ZNF317	57693	hgsc.bcm.edu	37	19	9271878	9271878	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ZNF317,colon,carcinoma,0,1	ZNF317	NM_020933	exon7	c.G1557T	p.T519T	GAAGACGCACATG	.	21	2	35	0	.	0
TRIP11	9321	hgsc.bcm.edu;bcgsc.ca	37	14	92474186	92474186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_004239	exon10	c.A1325G	p.Q442R	GACATCTGAAGTT	.	62	4	60	0	.	.
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55956163	55956163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	KDR,NS,carcinoma,0,1	KDR	NM_002253	exon23	c.G3152A	p.R1051Q	ATATCCCGGGCCA	.	30	8	68	0	.	0
MEGF6	1953	hgsc.bcm.edu	37	1	3440803	3440803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	MEGF6,NS,carcinoma,0,1	MEGF6	NM_001409	exon5	c.C489A	p.D163E	GCATTCGTCCACA	.	13	2	84	0	.	0
ANK3	288	hgsc.bcm.edu	37	10	61994461	61994461	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	ANK3,NS,carcinoma,0,1	ANK3	NM_020987	exon8	c.C882A	p.I294I	GGCATCGATTTTA	.	74	3	78	0	.	0
DUSP5P1	574029	hgsc.bcm.edu	37	1	228785861	228785861	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	TGAATACAGATTT	.	73	4	39	0	.	.
PSMA5	5686	hgsc.bcm.edu	37	1	109944658	109944658	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_002790	exon9	c.G703T	p.E235X	CCTCTTCAAGTTC	.	59	4	89	0	.	.
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	71195946	71195946	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_020819	exon9	c.A771G	p.L257L	CCATCTAGGTACG	.	58	17	85	0	.	.
ZC3H7A	29066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	11859523	11859523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_014153	exon14	c.A1541G	p.E514G	CTACATTCCTCCT	.	33	9	51	0	.	.
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	232070973	232070973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_025139	exon2	c.G22A	p.E8K	GCTCATGAATCTG	.	47	8	64	0	.	.
RDH12	145226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68195982	68195982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152443	exon8	c.T733A	p.C245S	CTGCTCTGCCTGC	.	14	5	46	0	.	.
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11230846	11230846	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001195798	exon13	c.T1924C	p.L642L	AACTTGTTGGCTG	.	44	23	68	0	.	.
LRP1B	53353	hgsc.bcm.edu	37	2	141128375	141128375	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	LRP1B,bladder,carcinoma,0,1	LRP1B	NM_018557	exon71	c.C10912A	p.R3638R	TGCACCGAAACTG	.	47	2	43	0	.	0
MICAL1	64780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	109769503	109769503	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_022765	exon13	c.G1758A	p.V586V	TGCAGACACCACC	.	19	9	24	0	.	.
RABGAP1L	9910	hgsc.bcm.edu	37	1	174957825	174957825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001243765	exon8	c.G810T	p.E270D	CAAGGAGGGTGCT	.	98	4	69	0	.	.
BRCA2	675	hgsc.bcm.edu	37	13	32971139	32971139	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	BRCA2_ENST00000544455,colon,carcinoma,0,2	BRCA2_ENST00000544455	NM_000059	exon26	c.G9606A	p.P3202P	AGGGCCGTACACT	.	47	2	87	0	.	0
PFKP	5214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3124594	3124594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_002627	exon2	c.G127A	p.V43I	GCTGCCGTCCGTG	.	22	8	33	0	.	.
LRRC6	23639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133627332	133627332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_012472	exon8	c.C926T	p.S309F	TTCAAAGAGAAGT	.	40	15	52	0	.	.
RCCD1	91433	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	91504867	91504867	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001017919	exon8	c.C999T	p.G333G	GCTGGGCCACGAG	.	27	4	52	0	.	.
KIF21A	55605	hgsc.bcm.edu;bcgsc.ca	37	12	39701493	39701493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001173464	exon34	c.C4316A	p.A1439E	GTACTTGCAGAAC	.	54	4	82	0	.	.
NBR2	10230	hgsc.bcm.edu;broad.mit.edu	37	17	41290728	41290728	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	TGCTGCCAATAAA	.	75	5	136	0	.	.
NXF4	55999	hgsc.bcm.edu	37	X	101818123	101818123	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	CTTCATCTGTCTC	.	9	7	46	0	.	.
CDH10	1008	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	24488016	24488016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	CDH10,NS,carcinoma,0,1	CDH10	NM_006727	exon12	c.C2123T	p.T708M	ACGTCCGTGTTAT	.	20	4	57	0	.	0
NF2	4771	hgsc.bcm.edu	37	22	30054254	30054254	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	NF2_ENST00000403999,colon,carcinoma,0,13	NF2_ENST00000403999	NM_016418	exon7	c.675+1G>T	.	ATCCGGGTGTGTT	.	45	2	78	0	.	0
UGT3A1	133688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	35965666	35965666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152404	exon4	c.A665G	p.D222G	GTGTTGTCAAATG	.	54	26	115	0	.	.
OPRL1	4987	hgsc.bcm.edu	37	20	62724277	62724277	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	OPRL1,colon,carcinoma,0,1	OPRL1	NM_000913	exon2	c.G204C	p.G68G	CCTGGGGAACTGC	.	45	2	74	0	.	0
LRIT3	345193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	110788888	110788888	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_198506	exon3	c.T681A	p.D227E	TCTGGATCCACTG	.	29	13	53	0	.	.
PKD1	5310	hgsc.bcm.edu;bcgsc.ca	37	16	2162835	2162835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_000296	exon13	c.C3115A	p.L1039M	CCGTCAGTGCTAG	.	79	5	86	0	.	.
TMEM161B-AS1	100505894	hgsc.bcm.edu	37	5	87678454	87678454	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	ATGATGAAGTTAG	.	6	4	13	0	.	.
RICTOR	253260	hgsc.bcm.edu	37	5	38946582	38946582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152756	exon33	c.C4387A	p.H1463N	CATCATGGGCAAA	.	76	4	97	0	.	.
SFXN1	94081	hgsc.bcm.edu;bcgsc.ca	37	5	174949392	174949392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_022754	exon10	c.C839T	p.T280I	TTGCTACACCCCT	.	54	4	101	0	.	.
PLIN4	729359	hgsc.bcm.edu	37	19	4511680	4511680	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	PLIN4_ENST00000301286,right_lower_lobe,carcinoma,0,2	PLIN4_ENST00000301286	NM_001080400	exon3	c.T2250C	p.D750D	CACAGCATCTTTA	.	16	8	35	0	.	0
TGIF2	60436	hgsc.bcm.edu	37	20	35219439	35219439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_021809	exon3	c.C319A	p.R107S	CTCCCCCGTGGCA	.	69	4	126	0	.	.
FAR2	55711	hgsc.bcm.edu	37	12	29469923	29469923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	FAR2,colon,carcinoma,0,1	FAR2	NM_018099	exon9	c.C1105T	p.R369W	TATCTGCGGCTCA	.	25	2	38	0	.	0
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	77470478	77470478	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_017662	exon3	c.T117A	p.C39X	TGGAGTACATCTA	.	57	28	83	0	.	.
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu	37	8	139705902	139705902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_152888	exon35	c.C2741A	p.A914E	CCAGCTGCTCCAG	.	45	4	93	0	.	.
PRICKLE2-AS1	100652759	hgsc.bcm.edu	37	3	64082612	64082612	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	AATCAAGGAACTT	.	48	4	99	0	.	.
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142168326	142168326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001184	exon47	c.C7880T	p.A2627V	TCAGTAGCTTCCT	.	33	17	83	0	.	.
ATG16L1	55054	hgsc.bcm.edu	37	2	234189793	234189793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_030803	exon11	c.G1103T	p.G368V	ATGCAGGAATTAC	.	77	4	88	0	.	.
PPP6C	5537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	127915867	127915867	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001123355	exon7	c.G725A	p.W242X	ATAGCCCAGGTAT	.	41	19	82	0	.	.
GATA3	2625	hgsc.bcm.edu	37	10	8100385	8100385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_002051	exon3	c.C359T	p.T120M	CCAAGACGTCCAT	.	93	4	134	0	.	.
MIPOL1	145282	hgsc.bcm.edu	37	14	37736219	37736219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	MIPOL1,NS,carcinoma,0,1	MIPOL1	NM_001195296	exon6	c.G96T	p.M32I	GACTATGAATTCT	.	38	2	68	0	.	0
MGRN1	23295	hgsc.bcm.edu	37	16	4733264	4733264	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_015246	exon15	c.C1522T	p.Q508X	TCACCACAGCAAG	.	61	4	74	0	.	.
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	223793606	223793606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_203372	exon12	c.G1492A	p.G498R	AGAGTGGGAGCAC	.	61	6	92	0	.	.
PER2	8864	hgsc.bcm.edu	37	2	239164502	239164502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	PER2,NS,carcinoma,0,1	PER2	NM_022817	exon18	c.G2116T	p.G706C	CAGGGCCCGCCAG	.	26	2	53	0	.	0
ARNTL2	56938	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	27573423	27573423	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_020183	exon17	c.G1869T	p.L623L	GGGCCTGGGAGAC	.	43	4	75	0	.	.
CKAP5	9793	hgsc.bcm.edu;bcgsc.ca	37	11	46780475	46780475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	NM_001008938	exon35	c.C4687A	p.Q1563K	TTACCTGTGTCAG	.	49	4	75	0	.	.
BCL9	607	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	147096004	147096004	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	BCL9	NM_004326	exon10	c.C3525T	p.G1175G	AGAAGGCCCCCTT	.	76	37	54	1	.	150
HMGCL	3155	broad.mit.edu	37	1	24147070	24147070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	HMGCL	NM_000191	exon2	c.C74T	p.S25F	CCCATAGATGAGG	.	24	3	95	0	.	22
.	0	broad.mit.edu;ucsc.edu	37	1	246939562	246939562	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	CTGAGGTGGAAAA	.	79	40	59	0	.	.
SEMA4G	57715	broad.mit.edu	37	10	102743836	102743836	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	SEMA4G	NM_017893	exon14	c.2480delA	p.E827fs	TCCTGGAAAAAAG	.	6	2	6	0	.	55
ZEB1	6935	broad.mit.edu	37	10	31791305	31791305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ZEB1	NM_001174096	exon4	c.G352A	p.E118K	GATGCAGAAAATG	.	54	3	54	0	.	173
ZNF503	84858	broad.mit.edu	37	10	77161113	77161115	+	In_Frame_Del	DEL	CCG	CCG	-	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ZNF503	NM_032772	exon1	c.63_65del	p.21_22del	CCGCCTCCGCCGC	.	6	2	12	0	.	25
LOC643923	0	broad.mit.edu;ucsc.edu	37	11	107462568	107462568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	TCGGTCTCCAGGG	.	44	21	86	0	.	.
NELL2	4753	broad.mit.edu;bcgsc.ca	37	12	44926453	44926453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	NELL2	NM_001145107	exon17	c.G1865A	p.C622Y	TTAATGCAATTAG	.	17	6	43	0	.	286
ANGEL1	23357	broad.mit.edu;bcgsc.ca	37	14	77275681	77275681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ANGEL1	NM_015305	exon2	c.G370T	p.D124Y	GCTCATCCAGGTT	.	6	3	19	0	.	63
MYBBP1A	10514	broad.mit.edu	37	17	4458229	4458229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	MYBBP1A	NM_014520	exon2	c.T221A	p.L74Q	CGCTTCAGGGCAT	.	52	3	97	0	.	69
TMEM11	8834	broad.mit.edu;bcgsc.ca	37	17	21101947	21101947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	TMEM11	NM_003876	exon2	c.C269T	p.T90I	CAGGCGGTGCCCG	.	14	7	29	0	.	15
.	0	broad.mit.edu	37	2	178042509	178042509	+	RNA	DEL	A	A	-	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	TCGAGGAAGGGCG	.	6	2	10	0	.	.
CCNT2	905	broad.mit.edu	37	2	135711353	135711353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	CCNT2	NM_058241	exon9	c.G1328T	p.R443L	AAAAGCGTAAACT	.	46	3	30	0	.	98
ZFP64	55734	broad.mit.edu	37	20	50701719	50701719	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ZFP64	NM_199427	exon9	c.1315delG	p.E439fs	GCTTCTCCCCCGA	.	6	2	14	0	.	240
MYLIP	0	broad.mit.edu;bcgsc.ca	37	6	16148551	16148554	+	RNA	DEL	AGTT	AGTT	-	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	MYLIP	.	.	.	.	CATCACAGTTAGT	.	28	18	24	0	.	44
UBR2	23304	broad.mit.edu	37	6	42600594	42600594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	UBR2	NM_015255	exon13	c.G1497T	p.K499N	GCAGAAGTTCCTA	.	42	3	46	0	.	134
PDGFRL	5157	broad.mit.edu;bcgsc.ca	37	8	17447006	17447006	+	Missense_Mutation	SNP	C	C	T	rs373035421		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PDGFRL	NM_006207	exon3	c.C85T	p.R29C	AACAAGCGTCCAA	.	72	5	139	0	.	27
RNR2	0	broad.mit.edu	37	MT	2530	2530	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	ACCAGTATTAGAG	.	826	8	431	0	.	.
ZSWIM5	57643	ucsc.edu	37	1	45500112	45500112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ZSWIM5	NM_020883	exon11	c.C2321A	p.A774E	TCGCCTGCAGAAG	.	35	4	69	0	.	72
TRANK1	9881	ucsc.edu;bcgsc.ca	37	3	36896814	36896814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	TRANK1	NM_014831	exon12	c.G4267T	p.A1423S	TCTGGGCCGTGTC	.	15	4	46	0	.	398
CCR1	1230	ucsc.edu	37	3	46245105	46245105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	CCR1	NM_001295	exon2	c.A700G	p.K234E	TGGATTTCTTCTC	.	34	4	62	0	.	36
NCKIPSD	51517	ucsc.edu;bcgsc.ca	37	3	48712059	48712059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	NCKIPSD	NM_016453	exon13	c.C2087A	p.T696N	GGTGAGGTCTCCT	.	17	4	23	0	.	52
INTS12	57117	ucsc.edu	37	4	106604263	106604263	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	INTS12	NM_020395	exon8	c.C1016A	p.S339X	TTGGATGATGTTG	.	19	4	66	0	.	35
THBS2	7058	ucsc.edu;bcgsc.ca	37	6	169632768	169632768	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	THBS2	NM_003247	exon13	c.G1923A	p.T641T	CTTTTCCGTCTTG	.	22	4	29	0	.	230
PTPRR	5801	ucsc.edu;bcgsc.ca	37	12	71139661	71139661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PTPRR	NM_002849	exon6	c.C944T	p.A315V	GTGGTAGCTTTGA	.	30	4	70	0	.	109
PLBD2	196463	ucsc.edu;bcgsc.ca	37	12	113812331	113812331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PLBD2	NM_173542	exon4	c.G596A	p.R199H	AAGGCCGTGTGAG	.	27	4	65	0	.	33
SNAI3	333929	ucsc.edu;bcgsc.ca	37	16	88747696	88747696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	SNAI3	NM_178310	exon2	c.C503T	p.A168V	TGCCTGGCCAGCC	.	33	4	40	0	.	23
YPEL1	29799	ucsc.edu;bcgsc.ca	37	22	22064926	22064926	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	YPEL1,rectum,carcinoma,-1,1	YPEL1	NM_013313	exon2	c.C108A	p.L36L	GGAGATGAGCTCG	.	42	4	76	0	.	6
TRAF3IP2	10758	bcgsc.ca	37	6	111912799	111912799	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	TRAF3IP2,colon,carcinoma,0,1	TRAF3IP2	NM_147686	exon2	c.491delC	p.P164fs	GCATTAGGTAAAC	.	20	4	62	0	.	35
WASF2	10163	bcgsc.ca	37	1	27742558	27742558	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	WASF2	NM_006990	exon5	c.C458T	p.P153L	TATGAAGGGTCTG	.	28	3	88	0	.	41
TIE1	7075	bcgsc.ca	37	1	43783044	43783044	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	TIE1	NM_005424	exon15	c.G2584T	p.G862W	AAGGACGGGCTGA	.	19	3	41	0	.	132
.	0	bcgsc.ca	37	1	142620859	142620859	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	AAGGACTCTTCTC	.	83	5	158	2	.	.
PKLR	5313	bcgsc.ca	37	1	155271109	155271109	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PKLR	NM_000298	exon1	c.C78A	p.S26S	CAGGATGGACTTT	.	72	4	40	0	.	70
.	7203	bcgsc.ca	37	1	156337543	156337543	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	TGCCAGGCTCGGT	.	79	4	71	0	.	.
MAPKAPK2	9261	bcgsc.ca	37	1	206904533	206904533	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	MAPKAPK2	NM_004759	exon7	c.C818A	p.P273Q	TCTCTCCGGGCAT	.	48	4	30	0	.	45
XPO1	7514	bcgsc.ca	37	2	61711107	61711107	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	XPO1	NM_003400	exon21	c.C2642A	p.A881D	TTGAAAGCCCAAA	.	72	4	126	0	.	108
TTN	7273	bcgsc.ca	37	2	179655547	179655547	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	TTN	NM_001267550	exon11	c.C1688A	p.A563D	GATGCAGCAGTTA	.	63	4	114	0	.	18412
SLC23A3	151295	bcgsc.ca	37	2	220029918	220029918	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	SLC23A3	NM_001144890	exon8	c.C1164A	p.P388P	CACGTTGGGGAAG	.	41	4	40	0	.	60
CACNA2D2	9254	bcgsc.ca	37	3	50403587	50403587	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	CACNA2D2	NM_001174051	exon33	c.G2738A	p.R913K	AAGAACCTGCCCA	.	25	4	33	0	.	82
.	0	bcgsc.ca	37	3	84339395	84339395	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	TTTATCTGGCTGT	.	70	29	126	0	.	.
CORIN	10699	bcgsc.ca	37	4	47647102	47647102	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	CORIN	NM_006587	exon14	c.C1953A	p.N651K	ACAGCAGTTTTTC	.	47	4	68	0	.	154
G3BP2	9908	bcgsc.ca	37	4	76582169	76582169	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	G3BP2	NM_012297	exon5	c.C381A	p.H127Q	ATCATTGTGAACA	.	49	4	78	0	.	52
NEDD9	4739	bcgsc.ca	37	6	11191311	11191311	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	NEDD9	NM_001142393	exon6	c.C791A	p.P264H	GTTGGAGGAATGT	.	55	4	72	0	.	191
PRRC2A	7916	bcgsc.ca	37	6	31604380	31604380	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	PRRC2A	NM_004638	exon27	c.C5929A	p.Q1977K	CCTGCCCAGCAGG	.	41	4	48	0	.	152
HTR3B	9177	bcgsc.ca	37	11	113813745	113813745	+	Silent	SNP	G	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	HTR3B	NM_006028	exon7	c.G738A	p.L246L	GAGTCTGCTGATT	.	12	3	31	0	.	50
NAV3	89795	bcgsc.ca	37	12	78583941	78583941	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	NAV3	NM_014903	exon33	c.G6167T	p.G2056V	AATCTGGAAGGAA	.	27	3	62	0	.	506
INO80E	8479	bcgsc.ca	37	16	30007577	30007577	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	INO80E	.	.	.	.	ACGGCAGCCACTG	.	31	5	44	0	.	26
.	0	bcgsc.ca	37	16	32014100	32014100	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	CAGTGCCCAACAT	.	54	4	90	0	.	.
HAS3	3038	bcgsc.ca	37	16	69148716	69148716	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	HAS3	NM_005329	exon4	c.G1209T	p.R403R	CTACCGGGGCCGC	.	17	3	26	0	.	61
ALOX15	246	bcgsc.ca	37	17	4542400	4542400	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	ALOX15	NM_001140	exon3	c.G365A	p.G122D	AACAGGCCCTGAG	.	18	3	44	0	.	70
.	0	bcgsc.ca	37	20	29873762	29873762	+	RNA	SNP	C	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	CCCAGTCGATTCC	.	14	5	34	0	.	.
.	2884	bcgsc.ca	37	21	28516116	28516116	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	AGTCCCGGACCGT	.	23	7	52	0	.	.
.	28775	bcgsc.ca	37	22	22724062	22724062	+	Splice_Site	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	GCCCAGGTTAAGA	.	89	4	157	0	.	.
.	0	bcgsc.ca	37	22	41471016	41471016	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	.	.	.	.	.	GTTGGCGATGATG	.	21	3	50	0	.	.
SH3KBP1	30011	bcgsc.ca	37	X	19725065	19725065	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2Q-01A-11D-A417-09	TCGA-W5-AA2Q-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd6f3b9d-7920-4d6f-9409-3875cdc98529	129f8032-36f2-4e17-8be5-861814b73983	.	SH3KBP1	NM_031892	exon4	c.C324A	p.S108R	CAGGTAGCTGAAT	.	16	3	40	0	.	96
