Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
MAGEA1	4100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	152482527	152482527	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004988	exon3	c.485delC	p.A162fs	GGTCTGCTTCCTT	.	71	24	63	0	.	.
CLIP4	79745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	29366790	29366792	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_024692	exon7	c.863_865del	p.288_289del	GGATCGTGTTGTT	.	61	16	35	0	.	.
IBSP	3381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	88732730	88732732	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	IBSP,NS,carcinoma,0,1	IBSP	NM_004967	exon7	c.621_623del	p.207_208del	GTCACTGGAGCCA	.	54	18	39	0	.	0
LINC00304	283860	hgsc.bcm.edu	37	16	89226805	89226873	+	RNA	DEL	CCCCCGCTTCCTCACCCGAAGACCCCCCGCTTCCTCACCCAAAGACCCCCCGCTTCCTTGCCCCGAAGA	CCCCCGCTTCCTCACCCGAAGACCCCCCGCTTCCTCACCCAAAGACCCCCCGCTTCCTTGCCCCGAAGA	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	CCCCCGCTTCCTCACCCGAAGACCCCCCGCTTCCTCACCCAAAGACCCCCCGCTTCCTTGCCCCGAAGA	CCCCCGCTTCCTCACCCGAAGACCCCCCGCTTCCTCACCCAAAGACCCCCCGCTTCCTTGCCCCGAAGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GAAGACCCCCCGC	.	139	0	95	0	.	.
MAGEA1	4100	hgsc.bcm.edu	37	X	152482527	152482528	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004988	exon3	c.484_485del	p.162_162del	GGTCTGCTTCCTT	.	71	0	63	0	.	.
tRNA-Cys	0	hgsc.bcm.edu	37	MT	5801	5801	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TTGCAATTCAATA	.	654	593	173	0	.	.
DOCK9	23348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99554100	99554100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001130049	exon13	c.G1438A	p.E480K	CTTTTTCAATTCT	.	68	8	50	0	.	.
PUM1	9698	hgsc.bcm.edu	37	1	31465481	31465481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PUM1,NS,carcinoma,0,1	PUM1	NM_014676	exon7	c.C914A	p.S305Y	TTAGCAGAGTTCT	.	31	2	28	0	.	0
FAM169A	26049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74091907	74091907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	FAM169A,NS,carcinoma,0,1	FAM169A	NM_015566	exon11	c.C1208A	p.A403E	GGCCGTGCATCTC	.	36	15	30	0	.	0
MIR548N	100302152	hgsc.bcm.edu	37	2	179367333	179367333	+	RNA	SNP	T	T	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TTTTTTTAAGGGG	.	93	4	54	0	.	.
HLA-H	3136	hgsc.bcm.edu	37	6	29855595	29855595	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ENSG00000196306,brain,glioma,0,1	ENSG00000196306	.	.	.	.	CTGACCCAGACCT	.	55	6	35	1	.	0
LRRCC1	85444	hgsc.bcm.edu	37	8	86038933	86038933	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_033402	exon9	c.G1282T	p.E428X	CTTGTTGAACAGC	.	85	3	46	0	.	.
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	38798332	38798332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	TLR1,NS,carcinoma,0,1	TLR1	NM_003263	exon4	c.C2121G	p.C707W	ATAATGGCACCAT	.	99	34	56	0	.	0
HEATR2	54919	hgsc.bcm.edu	37	7	814755	814755	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HEATR2,NS,carcinoma,0,1	HEATR2	NM_017802	exon11	c.C2195A	p.S732X	AAACCTCGGGCGG	.	46	4	28	0	.	0
LRP1B	53353	hgsc.bcm.edu	37	2	141812690	141812690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	LRP1B,NS,carcinoma,0,1	LRP1B	NM_018557	exon10	c.G1547A	p.C516Y	CTTTTGCATGACC	.	41	2	35	0	.	0
WDFY3	23001	hgsc.bcm.edu	37	4	85716106	85716106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014991	exon20	c.C3194A	p.P1065H	TTATGAGGGGCCA	.	86	4	59	0	.	.
SLC18A2	6571	hgsc.bcm.edu	37	10	119003781	119003781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SLC18A2,NS,haematopoietic_neoplasm,0,1	SLC18A2	NM_003054	exon3	c.G421T	p.V141F	GCCACCGTCCAGC	.	37	2	20	0	.	0
WDR26	80232	hgsc.bcm.edu	37	1	224599141	224599141	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_025160	exon7	c.G1146A	p.W382X	AACTTGCCATATG	.	79	3	62	0	.	.
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66878815	66878815	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_007168	exon28	c.A3633C	p.P1211P	TCCTTCTGGTTCT	.	59	6	38	0	.	.
WDR33	55339	hgsc.bcm.edu;broad.mit.edu	37	2	128522166	128522166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	WDR33_ENST00000409658,NS,carcinoma,0,1	WDR33_ENST00000409658	NM_001006622	exon6	c.G862A	p.A288T	AAAATGCGGCAGA	.	44	3	30	0	.	0
GAL3ST2	64090	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	242741335	242741335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_022134	exon3	c.G259A	p.G87S	CCCGCCGGCTCAC	.	48	9	17	0	.	.
SLC12A6	9990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	34628712	34628712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_133647	exon1	c.G170A	p.S57N	GGCTCACTCCGGC	.	77	29	32	0	.	.
MYH10	4628	hgsc.bcm.edu	37	17	8408136	8408136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MYH10,NS,carcinoma,0,1	MYH10	NM_001256012	exon28	c.G3475A	p.E1159K	CGGATTCAAAGTC	.	30	2	29	0	.	0
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75969392	75969392	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_006633	exon25	c.A3187T	p.I1063F	TCTATCATTTCTT	.	60	20	44	0	.	.
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22063114	22063114	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001032730	exon9	c.G996A	p.G332G	GTAGGACCCACCT	.	40	17	49	0	.	.
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	24729730	24729730	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_000359	exon4	c.C683A	p.S228X	GCGTCTGATTGTG	.	23	16	33	0	.	.
NCOR1	9611	hgsc.bcm.edu	37	17	15971432	15971432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001190440	exon31	c.C4565A	p.T1522K	GAAATTGTAACTG	.	84	4	54	0	.	.
GLRA3	8001	hgsc.bcm.edu	37	4	175580272	175580272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	GLRA3,colon,carcinoma,0,1	GLRA3	NM_001042543	exon8	c.C1004T	p.A335V	ACAGCTGCATACT	.	38	2	34	0	.	0
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42293340	42293340	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014233	exon4	c.A252C	p.T84T	TGTCAATGTACGG	.	57	7	31	0	.	.
GGTLC1	92086	hgsc.bcm.edu	37	20	23967157	23967157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	GGTLC1,NS,carcinoma,0,12	GGTLC1	NM_178311	exon2	c.T92C	p.M31T	TCCGGCATGTAGA	.	132	6	81	2	.	0
FAM127A	8933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134166535	134166535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001078171	exon1	c.C122A	p.P41Q	GACTCCCGGAGTT	.	101	28	87	0	.	.
NELFCD	51497	hgsc.bcm.edu;ucsc.edu	37	20	57568731	57568731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_198976	exon13	c.G1547T	p.G516V	GTCGAGGTTATGT	.	39	4	24	0	.	.
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66391445	66391445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001164664	exon7	c.C854G	p.S285W	GCTGGTCGTTGGC	.	75	33	44	0	.	.
SLC25A32	81034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	104413805	104413805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_030780	exon6	c.C751A	p.R251S	GAAGACGAGCTCT	.	93	4	38	0	.	.
SCAI	286205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	127762184	127762184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_173690	exon14	c.C1299A	p.H433Q	TTCCTTGTGGGAC	.	81	4	52	0	.	.
DDR1	780	hgsc.bcm.edu	37	6	30858814	30858814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001202523	exon5	c.C536T	p.A179V	TGGTTGCCCGACT	.	62	4	39	0	.	.
HSPG2	3339	hgsc.bcm.edu	37	1	22214554	22214554	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HSPG2,NS,malignant_melanoma,0,2	HSPG2	NM_005529	exon7	c.C580T	p.Q194X	GGAACTGGGGCAC	.	30	2	29	0	.	0
MUC4	4585	hgsc.bcm.edu	37	3	195511212	195511212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4_ENST00000463781	NM_018406	exon2	c.C7239G	p.H2413Q	GGTGGCGTGACCT	.	169	7	125	0	.	0
RIMS1	22999	hgsc.bcm.edu	37	6	72892048	72892048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	RIMS1,colon,carcinoma,0,1	RIMS1	NM_014989	exon6	c.C874T	p.R292C	CGGAAACGCGTGC	.	38	2	35	0	.	0
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	198710997	198710997	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_080921	exon21	c.1921-1G>T	.	TGACTAGAAAAAA	.	30	13	16	0	.	.
PAPPA2	60676	hgsc.bcm.edu	37	1	176759060	176759060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_020318	exon18	c.G4831T	p.G1611C	ACCAATGGCTTCA	.	88	4	59	0	.	.
RIOK2	55781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	96503500	96503500	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001159749	exon8	c.G1068T	p.R356R	ACAGTTCCGTTCA	.	35	17	31	0	.	.
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	105510177	105510177	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_013437	exon5	c.C603T	p.A201A	TTCTTTGGCACAG	.	97	23	46	0	.	.
SH2D3A	10045	hgsc.bcm.edu	37	19	6755188	6755188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SH2D3A,NS,carcinoma,0,1	SH2D3A	NM_005490	exon5	c.A635G	p.K212R	GGGGGCTTCGTTG	.	79	3	60	0	.	0
BLK	640	hgsc.bcm.edu	37	8	11415529	11415529	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	BLK,NS,carcinoma,+2,1	BLK	NM_001715	exon10	c.G1011T	p.L337L	AAGGCTGATTGAC	.	22	2	16	0	.	+2
AHNAK	79026	hgsc.bcm.edu	37	11	62300279	62300279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	AHNAK,NS,carcinoma,0,1	AHNAK	NM_001620	exon5	c.A1610T	p.K537I	GAGCCTTTAAGTG	.	26	2	12	0	.	0
ZNF157	7712	hgsc.bcm.edu	37	X	47272743	47272743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_003446	exon4	c.G1271T	p.S424I	TCTTCAGTATGAA	.	79	4	43	0	.	.
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	88678415	88678415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001243101	exon10	c.G1121C	p.G374A	TAGTTGCCATTGT	.	103	34	43	0	.	.
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	45262071	45262071	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_005178	exon8	c.G1150T	p.E384X	TCCCCCGAGAGCA	.	20	8	14	0	.	.
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144991673	144991673	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PLEC_ENST00000436759,NS,carcinoma,0,3	PLEC_ENST00000436759	NM_201380	exon32	c.G12727T	p.E4243X	AACGCTCCATCAG	.	60	13	29	0	.	0
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58564141	58564141	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_177980	exon9	c.T1206C	p.I402I	CTTCATTGTCAAT	.	100	34	60	0	.	.
CHADL	150356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41633412	41633412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_138481	exon3	c.A1664G	p.N555S	ATGCGGTTTCCAC	.	103	34	65	0	.	.
HNRNPM	4670	hgsc.bcm.edu	37	19	8528546	8528546	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HNRNPM,caecum,carcinoma,0,1	HNRNPM	NM_031203	exon5	c.C414T	p.S138S	TCTGAGCGGAAGA	.	50	2	33	0	.	0
HRH3	11255	hgsc.bcm.edu;broad.mit.edu	37	20	60791534	60791534	+	Missense_Mutation	SNP	G	G	A	rs374571202		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_007232	exon3	c.C866T	p.A289V	AGGGTCGCCTCCC	.	16	7	14	0	.	.
RALGAPA1	253959	hgsc.bcm.edu	37	14	36123575	36123575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_194301	exon29	c.C4087A	p.Q1363K	TTACTTGAATAAT	.	48	4	22	0	.	.
CSRP3	8048	hgsc.bcm.edu	37	11	19206570	19206570	+	Missense_Mutation	SNP	C	C	T	rs377066670		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	CSRP3,NS,malignant_melanoma,0,1	CSRP3	NM_003476	exon6	c.G437A	p.R146H	GCACAGCGGAAAC	.	68	3	44	1	.	0
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34663014	34663014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001134734	exon2	c.G509A	p.S170N	CAGGCAGTAATGA	.	29	13	23	0	.	.
RNU6-76	100873777	hgsc.bcm.edu	37	16	33546482	33546482	+	RNA	SNP	G	G	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TACACTGTAGAAA	.	52	16	29	0	.	.
ZNF527	84503	hgsc.bcm.edu	37	19	37879856	37879856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,1	.	NM_032453	exon5	c.A905G	p.Y302C	AACCATATGCATG	.	40	3	30	1	.	78
CFTR	1080	hgsc.bcm.edu	37	7	117232262	117232262	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	CFTR,NS,carcinoma,0,1	CFTR	NM_000492	exon14	c.G2041T	p.E681X	TGGACAGAAACAA	.	40	2	25	0	.	0
GRM3	2913	hgsc.bcm.edu	37	7	86394780	86394780	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	GRM3,NS,carcinoma,-2,1	GRM3	NM_000840	exon2	c.G319T	p.E107X	GCATTGGAGCAAT	.	43	2	31	0	.	-2
KTI12	112970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52498812	52498812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_138417	exon1	c.C622A	p.L208I	CCAGGAGTTCGGG	.	88	27	63	0	.	.
SRPX2	27286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	99921900	99921900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014467	exon8	c.C931A	p.Q311K	AGCCGCCAGTGGT	.	60	27	44	0	.	.
RAB44	401258	hgsc.bcm.edu	37	6	36690143	36690143	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001257357	exon9	c.C2232T	p.G744G	AAGGGGCTCTCCT	.	34	10	17	0	.	.
GRM5	2915	hgsc.bcm.edu;bcgsc.ca	37	11	88323785	88323785	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_000842	exon7	c.C1674A	p.P558P	ATCAGTGGGCCAA	.	51	4	35	0	.	.
PPFIBP1	8496	hgsc.bcm.edu	37	12	27832995	27832995	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001198915	exon18	c.1454+1G>T	.	TAACAGGTAAGAA	.	87	4	62	0	.	.
CPVL	54504	hgsc.bcm.edu	37	7	29111505	29111505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_019029	exon9	c.G748A	p.A250T	ATTCTGCATAGCC	.	98	3	55	0	.	.
DNAJA3	9093	hgsc.bcm.edu	37	16	4484495	4484495	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001135110	exon2	c.G322T	p.E108X	CAGAAAGAGATCA	.	62	4	48	0	.	.
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	94068073	94068073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004440	exon4	c.C889T	p.P297S	GAGTTGGACAACG	.	21	9	27	0	.	.
RYR1	6261	hgsc.bcm.edu	37	19	39062862	39062862	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	RYR1,NS,carcinoma,0,2	RYR1	NM_000540	exon95	c.G13950A	p.L4650L	CCTCCTGCATACA	.	39	2	32	0	.	0
TMEM59	9528	hgsc.bcm.edu	37	1	54512947	54512947	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004872	exon2	c.T288C	p.C96C	AGATTCACATTCC	.	69	4	49	0	.	.
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43281074	43281074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_174916	exon35	c.G3940T	p.D1314Y	GAGGATCCCTTTC	.	78	36	45	0	.	.
ROR2	4920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	94487167	94487167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004560	exon9	c.G1609A	p.V537I	GGCAGACGACGTT	.	9	7	19	0	.	.
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	8467101	8467101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004218	exon3	c.G368A	p.G123D	TGGTGGGCAACAA	.	25	13	11	0	.	.
POLA1	5422	hgsc.bcm.edu	37	X	24741359	24741359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_016937	exon11	c.C1157T	p.T386M	AGCGAACGCTTTA	.	91	4	51	0	.	.
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	78498091	78498091	+	Silent	SNP	G	G	A	rs376356209		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001098816	exon16	c.C2217T	p.C739C	CCCTACGCACACG	.	34	12	33	0	.	.
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10568639	10568639	+	Missense_Mutation	SNP	C	C	T	rs200742358	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001111307	exon8	c.C962T	p.P321L	CCCAGCCGCCCCC	.	59	22	37	0	.	.
SCG5	6447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	32988766	32988766	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001144757	exon6	c.A595T	p.K199X	GCAAAGAAGTCTG	.	43	20	39	0	.	.
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	27277339	27277339	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_000484	exon15	c.C1960G	p.P654A	TACCTGGTCGAGT	.	25	13	32	0	.	.
SUPT20H	55578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	37595675	37595675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_017569	exon21	c.C1729T	p.P577S	CTGCAGGAGTTAT	.	22	15	31	0	.	.
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	37028705	37028705	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001013736	exon1	c.A2222T	p.E741V	GCCCAGAGCCTCC	.	219	14	149	0	.	.
GUCY1A3	2982	hgsc.bcm.edu	37	4	156632290	156632290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	GUCY1A3,scalp,carcinoma,0,1	GUCY1A3	NM_001130687	exon6	c.G973T	p.E325X	TACTTTGAAATTC	.	50	2	42	0	.	0
NBPF22P	285622	hgsc.bcm.edu	37	5	85580175	85580175	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CAGAGTGTGAAGA	.	58	19	36	0	.	.
IRX1	79192	hgsc.bcm.edu	37	5	3599509	3599509	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,1	.	NM_024337	exon2	c.C447T	p.H149H	CGAGCACCGCAAG	.	39	2	44	0	.	106
MYH15	22989	hgsc.bcm.edu;bcgsc.ca	37	3	108174599	108174599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014981	exon21	c.G2306A	p.R769Q	CCAAATCGGTACT	.	55	4	48	0	.	.
LDLRAD1	388633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	54474764	54474764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001010978	exon6	c.G509T	p.C170F	GAAGGACAGCGCC	.	14	4	13	0	.	.
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198266713	198266713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SF3B1,right_upper_lobe,carcinoma,0,5	SF3B1	NM_012433	exon15	c.G2219A	p.G740E	ACCTTTCCTCTGT	.	101	31	53	0	.	0
OC90	729330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133044207	133044207	+	Silent	SNP	G	G	T	rs199706785	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001080399	exon12	c.C952A	p.R318R	GGCACCGGGATGT	.	35	11	21	0	.	.
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44085499	44085499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_002840	exon29	c.A5081G	p.Y1694C	CTGACTACATCAA	.	27	10	20	0	.	.
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	69129946	69129946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PREX2,NS,carcinoma,0,1	PREX2	NM_024870	exon38	c.G4700A	p.R1567Q	TGATGCGGAAGCA	.	19	8	29	0	.	0
KRTAP1-4	728255	hgsc.bcm.edu;bcgsc.ca	37	17	39186078	39186078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001257305	exon1	c.C253A	p.P85T	AGGATGGGGGTGT	.	139	7	67	0	.	.
WDPCP	51057	hgsc.bcm.edu;bcgsc.ca	37	2	63609210	63609210	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_015910	exon11	c.G1455A	p.Q485Q	GCCCAGCTGTCCT	.	66	4	38	0	.	.
KIAA0922	23240	hgsc.bcm.edu	37	4	154525248	154525248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	KIAA0922_ENST00000409959,NS,carcinoma,0,2	KIAA0922_ENST00000409959	NM_001131007	exon25	c.G3084T	p.E1028D	GCGTGAGAACTGG	.	46	2	38	0	.	0
ATP6V1G2-DDX39B	100532737	hgsc.bcm.edu	37	6	31498987	31498987	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GAGAAAGGAAATT	.	40	20	32	0	.	.
GUCY2F	2986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	108641914	108641914	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001522	exon11	c.G2139T	p.T713T	AGGGGCCGTCCAC	.	56	8	51	0	.	.
SRPR	6734	hgsc.bcm.edu	37	11	126135636	126135636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SRPR,NS,carcinoma,0,1	SRPR	NM_003139	exon9	c.C1134A	p.F378L	ACTGCTGAACGTC	.	31	2	18	0	.	0
HOXB6	3216	hgsc.bcm.edu	37	17	46673137	46673137	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	ATTATTGTTGTTG	.	36	4	21	0	.	.
THPO	7066	hgsc.bcm.edu	37	3	184090419	184090419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	THPO,colon,carcinoma,0,1	THPO	NM_000460	exon6	c.C944A	p.T315N	ACAGGGGTGGGCA	.	27	2	19	0	.	0
ZCWPW1	55063	hgsc.bcm.edu;bcgsc.ca	37	7	100000187	100000187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_017984	exon16	c.C1423T	p.P475S	GAATGGGCAAAAT	.	57	4	30	0	.	.
VGLL4	9686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	11744451	11744451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_014667	exon2	c.G58A	p.E20K	GTTTTTCGTCATC	.	105	70	92	0	.	.
SPNS1	83985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28993745	28993745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001142448	exon9	c.G1034A	p.R345H	TCAGCCGCCGGCT	.	31	9	27	0	.	.
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29080455	29080455	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001005216	exon1	c.T788G	p.L263R	TGTATCTCCAGCC	.	27	12	25	0	.	.
C1orf170	84808	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	916538	916538	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GCCTCGGGGCTCC	.	34	6	30	0	.	.
GLRA2	2742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14748367	14748367	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001118885	exon10	c.C1119T	p.S373S	TTTTAGCGGTTAT	.	89	29	75	0	.	.
GMPR	2766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	16290801	16290801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_006877	exon8	c.T806A	p.M269K	ACGGGATGAGCTC	.	45	16	34	0	.	.
MIRLET7BHG	400931	hgsc.bcm.edu;broad.mit.edu	37	22	46501415	46501415	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GCCGGGCACCCAG	.	51	5	31	0	.	.
ND5	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	12736	12736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	ENST00000361567	exon1	c.G400A	p.A134T	GTTACCGCTAACA	.	14	13	41	0	.	.
HDAC4	9759	hgsc.bcm.edu;bcgsc.ca	37	2	240048352	240048352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_006037	exon12	c.G1318A	p.A440T	ACTGTGCGTGGAG	.	66	4	52	0	.	.
TOP2A	7153	hgsc.bcm.edu	37	17	38560515	38560515	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001067	exon19	c.A2172G	p.P724P	CTGACCTGGTTTC	.	93	4	66	0	.	.
ATP13A5	344905	hgsc.bcm.edu;bcgsc.ca	37	3	193081945	193081945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_198505	exon2	c.G188A	p.C63Y	GGGATGCAGTTGG	.	57	4	31	0	.	.
DLGAP2	9228	hgsc.bcm.edu	37	8	1626409	1626409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_004745	exon9	c.T2078C	p.V693A	ACAGCGTCACGGC	.	77	4	41	0	.	.
ADAM20	8748	hgsc.bcm.edu	37	14	70990328	70990328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ADAM20,NS,carcinoma,0,1	ADAM20	NM_003814	exon2	c.C1297A	p.Q433K	AATATTGGGCATA	.	47	2	65	0	.	0
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140250727	140250727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_018902	exon1	c.G2039A	p.R680Q	CTTCCCGGACTTT	.	114	27	38	0	.	.
SNTG2	54221	hgsc.bcm.edu	37	2	1168797	1168797	+	Silent	SNP	C	C	T	rs374240224	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SNTG2,NS,neuroblastoma,0,1	SNTG2	NM_018968	exon8	c.C519T	p.S173S	ATCCAGCGACCAC	.	86	4	54	0	.	0
PLOD2	5352	hgsc.bcm.edu	37	3	145788922	145788922	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_182943	exon19	c.C2028A	p.Y676X	AGGGGAGTATTTT	.	109	5	78	0	.	.
ZSCAN2	54993	hgsc.bcm.edu	37	15	85164298	85164298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ZSCAN2,NS,lymphoid_neoplasm,0,1	ZSCAN2	NM_181877	exon3	c.C872T	p.A291V	GGAGTGCCAACCT	.	47	2	30	0	.	0
ZNF449	203523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	134494603	134494603	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_152695	exon5	c.C1159T	p.R387X	AAAAAGCGATTCA	.	75	32	28	0	.	.
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52517156	52517156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_018728	exon28	c.C3388T	p.H1130Y	TTAAATGTTCCAG	.	123	44	49	0	.	.
NXF4	55999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	101822176	101822176	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CAAGAACTCTCTC	.	27	12	11	0	.	.
CHL1	10752	hgsc.bcm.edu	37	3	383704	383704	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	CHL1,NS,carcinoma,0,1	CHL1	NM_001253388	exon5	c.T618G	p.A206A	CTTTGCTGCATTT	.	39	2	29	0	.	0
UBE4B	10277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	10205034	10205034	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001105562	exon18	c.G2400A	p.W800X	CCAATGGAAAGAT	.	51	33	55	0	.	.
VPS13A	23230	hgsc.bcm.edu	37	9	79890501	79890501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001018038	exon25	c.G2600T	p.R867I	GAACCAGAAAGTT	.	95	4	93	0	.	.
CLCN4	1183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	10176631	10176631	+	Splice_Site	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001830	exon9	c.1389+1G>A	.	ATGAAGGTAAGTG	.	49	7	61	0	.	.
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	45807033	45807033	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_018079	exon7	c.C1053T	p.Y351Y	CCTAATGTACGAT	.	76	42	41	0	.	.
EEFSEC	60678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	128060585	128060585	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_021937	exon5	c.G1296A	p.R432R	CTCCAGGCTAGAT	.	25	7	22	0	.	.
PSMD6-AS2	100507062	hgsc.bcm.edu	37	3	63996509	63996509	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GACCTACTTTTAA	.	96	2	76	0	.	.
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	238990809	238990809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_016510	exon6	c.G760A	p.E254K	GATGTGGAGGACC	.	28	10	11	0	.	.
HPS5	11234	hgsc.bcm.edu	37	11	18339303	18339303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HPS5,NS,carcinoma,0,1	HPS5	NM_181507	exon2	c.C103A	p.L35I	CCTTTAGACGACT	.	58	3	43	0	.	0
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	4685133	4685133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_017913	exon2	c.C389T	p.A130V	CGGATGCCATTAG	.	59	5	72	0	.	.
MAATS1	89876	hgsc.bcm.edu	37	3	119466657	119466657	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_033364	exon16	c.2052-1G>T	.	TTTTTAGCCGAAC	.	65	4	50	0	.	.
CCDC129	223075	hgsc.bcm.edu	37	7	31617535	31617535	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	LOC223075,NS,carcinoma,0,2	LOC223075	NM_001257968	exon8	c.G735T	p.L245L	TCTGCTGAGTGAT	.	53	3	28	0	.	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	65300622	65300622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001142800	exon26	c.C5138T	p.P1713L	TCAGTGGGTCCCA	.	68	25	38	0	.	.
PATL1	219988	hgsc.bcm.edu	37	11	59418265	59418265	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_152716	exon13	c.C1546A	p.R516R	TGTCTCGAACTTG	.	91	4	76	0	.	.
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu	37	5	139781730	139781730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ANKHD1-EIF4EBP3,NS,carcinoma,0,2	ANKHD1-EIF4EBP3	NM_017978	exon1	c.G178A	p.G60S	AGCAGCGGCGGCG	.	33	3	14	0	.	0
SRA1	10011	hgsc.bcm.edu	37	5	139931630	139931630	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,1	.	NM_001035235	exon3	c.T327A	p.A109A	CATCACAGCCTCA	.	97	3	23	0	.	24
USP28	57646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113674003	113674003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_020886	exon23	c.G2739T	p.K913N	TTGGTACCTTAGA	.	67	36	87	0	.	.
SRPR	6734	hgsc.bcm.edu	37	11	126134929	126134929	+	Missense_Mutation	SNP	G	G	T	rs142997401	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SRPR,NS,carcinoma,0,1	SRPR	NM_003139	exon11	c.C1450A	p.R484S	TGGTGCGGCCACC	.	44	2	46	0	.	0
CDK12	51755	hgsc.bcm.edu	37	17	37665977	37665977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_016507	exon7	c.G2629T	p.D877Y	CTAGCAGATTTTG	.	89	4	52	0	.	.
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	140995729	140995729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_005462	exon4	c.C2539A	p.P847T	AGTTCCCCTGAGA	.	71	22	43	0	.	.
GPR87	53836	hgsc.bcm.edu	37	3	151012036	151012036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_023915	exon3	c.C998A	p.T333N	CTCCTGGTTCTGA	.	85	4	54	0	.	.
ACSBG2	81616	hgsc.bcm.edu	37	19	6187825	6187825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ACSBG2,NS,carcinoma,0,1	ACSBG2	NM_030924	exon13	c.G1896T	p.E632D	CTTGGAGAAGGAC	.	39	2	30	0	.	0
PSMB10	5699	hgsc.bcm.edu	37	16	67968568	67968568	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PSMB10,NS,carcinoma,0,2	PSMB10	NM_002801	exon8	c.C717A	p.G239G	GTAGCGGCCAGAC	.	42	2	43	0	.	0
GGT8P	645367	hgsc.bcm.edu	37	2	91963899	91963899	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GCCCTGCTGGGGA	.	68	4	29	0	.	.
MAP9	79884	hgsc.bcm.edu	37	4	156281387	156281387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MAP9,NS,carcinoma,0,1	MAP9	NM_001039580	exon7	c.C983A	p.T328K	TCAACTGTTCTGT	.	75	3	67	0	.	0
TRMT12	55039	hgsc.bcm.edu;bcgsc.ca	37	8	125464268	125464268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_017956	exon1	c.C1100T	p.T367I	AAATTACCACCAA	.	80	4	57	0	.	.
GYG2	8908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	2799129	2799129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_003918	exon12	c.G1381A	p.E461K	TCCATCGAAGAGA	.	44	18	23	0	.	.
UNC79	57578	hgsc.bcm.edu;bcgsc.ca	37	14	94084687	94084687	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_020818	exon29	c.C3843T	p.S1281S	ATACAGCGAAAAA	.	63	4	81	0	.	.
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156622711	156622711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_198427	exon8	c.C1969G	p.L657V	ACTGCCCTCTCTA	.	29	11	21	0	.	.
ERLEC1	27248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54035592	54035592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ERLEC1,NS,carcinoma,0,1	ERLEC1	NM_015701	exon9	c.C1036T	p.R346C	TGCTTTCGTGGGG	.	93	20	64	0	.	0
ZDHHC6	64429	hgsc.bcm.edu	37	10	114200370	114200370	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_022494	exon5	c.T603C	p.A201A	AAATGCAGCTAAT	.	82	2	68	0	.	.
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80151670	80151670	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_198082	exon6	c.G813A	p.Q271Q	GGTTAGCTGCACA	.	76	4	38	0	.	.
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	238990770	238990770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_016510	exon6	c.G721A	p.D241N	CACACGGATGCTG	.	35	12	11	0	.	.
RPL36A-HNRNPH2	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	100646777	100646777	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001199973	exon3	c.T252G	p.Y84X	TGGCTATGGTGGG	.	106	27	58	0	.	.
CLCN5	1184	hgsc.bcm.edu	37	X	49840560	49840560	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001127898	exon7	c.G526T	p.E176X	AACTCTGAGCATG	.	97	4	46	0	.	.
ELF4	2000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	129201166	129201166	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001421	exon9	c.G1522T	p.G508X	CTGGTCCAGCCCC	.	66	19	29	0	.	.
LRRC52	440699	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	165513519	165513519	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GGGTGGTTGTGGC	.	107	18	67	0	.	.
CCDC88C	440193	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	91883098	91883098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001080414	exon2	c.C145A	p.Q49K	TAATTTGGTTCAA	.	38	4	34	0	.	.
APAF1	317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99106135	99106135	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_181861	exon21	c.T2880C	p.T960T	TCTGACTGAAGCT	.	27	18	31	0	.	.
EP400	57634	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	132530051	132530051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_015409	exon38	c.G6972T	p.E2324D	AGCTGAGCCTGGT	.	26	4	23	0	.	.
SPHK2	56848	hgsc.bcm.edu	37	19	49132111	49132111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	SPHK2,caecum,carcinoma,0,1	SPHK2	NM_020126	exon7	c.G1046T	p.R349L	GCGAGCGCTTCAG	.	47	2	45	0	.	0
GXYLT1	283464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	42512815	42512815	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_173601	exon3	c.G473C	p.S158T	TTAAAGCTATGAT	.	100	40	60	0	.	.
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130287118	130287118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001102608	exon5	c.C2071A	p.Q691K	ATAGACCAAATGG	.	72	28	41	0	.	.
BMPR2	659	hgsc.bcm.edu	37	2	203383553	203383553	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001204	exon6	c.C630T	p.G210G	GATTGGCCGAGGT	.	95	4	54	0	.	.
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894459	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,4	.	NM_003505	exon1	c.A264G	p.Q88Q	GCAGCAACCGCCG	.	20	4	7	0	.	64
PXDNL	137902	hgsc.bcm.edu	37	8	52361599	52361599	+	Missense_Mutation	SNP	G	G	T	rs377262954	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	PXDNL_ENST00000356297,NS,carcinoma,0,1	PXDNL_ENST00000356297	NM_144651	exon11	c.C1329A	p.D443E	GTTGCCGTCAGCT	.	35	3	23	0	.	0
AMBRA1	55626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46529852	46529852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001267782	exon11	c.A2237G	p.Q746R	GAGCGCTGGCGAA	.	49	18	37	0	.	.
ZFP92	139735	hgsc.bcm.edu;broad.mit.edu	37	X	152686855	152686855	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001136273	exon4	c.C1020A	p.R340R	CCGGCGCGTGCAC	.	20	5	6	0	.	.
GLG1	2734	hgsc.bcm.edu	37	16	74496020	74496020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.,1	.	NM_001145667	exon22	c.C3008A	p.P1003H	AGCTGAGGATCCA	.	45	2	38	0	.	106
MAP1B	4131	hgsc.bcm.edu	37	5	71491850	71491850	+	Nonsense_Mutation	SNP	G	G	T	rs139604402	bycluster;alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_005909	exon5	c.G2668T	p.E890X	CCTGCCGAGTCCC	.	42	3	34	0	.	.
SPATA31E1	286234	hgsc.bcm.edu	37	9	90502147	90502147	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	C9orf79,NS,carcinoma,0,3	C9orf79	NM_178828	exon4	c.C2745A	p.T915T	CCCGACCGTGAGT	.	37	2	55	0	.	0
.	0	broad.mit.edu	37	11	119489814	119489814	+	RNA	DEL	T	T	-	rs138713709	bycluster;alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	AGTTACTTTTTTT	.	6	2	5	0	.	.
PRB2	653247	broad.mit.edu	37	12	11546320	11546322	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	PRB2	NM_006248	exon3	c.690_692del	p.230_231del	TGGGACTTGTTGT	.	141	7	84	0	.	168
KIF7	374654	broad.mit.edu	37	15	90196148	90196148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	KIF7	NM_198525	exon2	c.C14A	p.A5D	CTCTGAGCCTCCA	.	18	3	12	0	.	130
LOC283683	0	broad.mit.edu	37	15	23100429	23100430	+	RNA	DEL	GG	GG	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GTACGTGGGTGTG	.	9	3	5	0	.	.
.	0	broad.mit.edu	37	16	74342857	74342857	+	RNA	DEL	A	A	-	rs371445246	alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TGTCTCAAAAAAA	.	4	1	4	0	.	.
SMG1	23049	broad.mit.edu	37	16	18882689	18882689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SMG1	NM_015092	exon16	c.A2299G	p.N767D	TACTGTTGGCTAA	.	301	7	183	0	.	401
TTC25	83538	broad.mit.edu	37	17	40100452	40100452	+	RNA	DEL	A	A	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	TTC25	.	.	.	.	CGTCTCAAAAAAA	.	8	2	6	0	.	37
HNRNPUL1	11100	broad.mit.edu	37	19	41798301	41798301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	HNRNPUL1	NM_007040	exon8	c.G1151T	p.G384V	ACTTCGGACAGAG	.	42	3	34	0	.	73
ZNF826P	0	broad.mit.edu	37	19	20594818	20594818	+	RNA	DEL	T	T	-	rs200861949		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	ZNF826P	.	.	.	.	GAAGCCTTTTTTT	.	7	2	4	0	.	5
.	0	broad.mit.edu	37	2	65894933	65894933	+	RNA	DEL	A	A	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	AGGTTTAAAAAAA	.	12	3	8	0	.	.
ERBB4	2066	broad.mit.edu	37	2	212530115	212530115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	ERBB4	NM_001042599	exon15	c.A1804T	p.S602C	TGAAACTGTTTGC	.	102	5	87	1	.	480
.	0	broad.mit.edu;bcgsc.ca	37	2	89309651	89309651	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GGTTTTTGCTGAT	.	183	64	95	0	.	.
SPTBN1	0	broad.mit.edu	37	2	54877117	54877117	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SPTBN1	NM_003128	exon26	c.G5568T	p.L1856L	GGCTCTGGGCACA	.	36	3	26	0	.	378
FAM182B	0	broad.mit.edu	37	20	25755510	25755510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	FAM182B	.	.	.	.	CCATCGCGGCCAC	.	148	9	118	1	.	6
MUC4	4585	broad.mit.edu	37	3	195505763	195505763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MUC4_ENST00000463781,NS,carcinoma,0,4	MUC4	NM_018406	exon2	c.C12688T	p.L4230F	AGGAAAGGCTGGT	.	91	5	76	0	.	1505
MUC4	4585	broad.mit.edu	37	3	195515290	195515290	+	Missense_Mutation	SNP	C	C	G	rs78535324	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	MUC4_ENST00000463781,NS,carcinoma,0,4	MUC4	NM_018406	exon2	c.G3161C	p.S1054T	GGGGTGCTGTCAC	.	107	9	66	2	.	1505
LOC101243545	0	broad.mit.edu	37	3	161146937	161146937	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TTGTTGGCAACAT	.	57	7	32	0	.	.
LOC550113	0	broad.mit.edu	37	4	68918905	68918905	+	RNA	DEL	T	T	-	rs34085122	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TCTTAATTTTTTT	.	18	8	8	0	T|0.750;-|0.250	.
.	0	broad.mit.edu	37	5	179078735	179078735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CTCCCCTGGCTCC	.	102	5	51	1	.	.
FAT2	2196	broad.mit.edu;ucsc.edu	37	5	150948137	150948137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	FAT2	NM_001447	exon1	c.T356C	p.I119T	GCTTGGATGATGA	.	40	11	21	5	.	465
.	0	broad.mit.edu	37	5	34189325	34189325	+	RNA	DEL	T	T	-	rs372858629	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TTTTTCTTTTTTT	.	8	3	6	0	.	.
HLA-A	3105	broad.mit.edu;bcgsc.ca	37	6	29910607	29910607	+	Silent	SNP	G	G	C	rs72555397		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	HLA-A,NS,carcinoma,0,5	HLA-A	NM_001242758	exon2	c.G147C	p.V49V	CGCCGTGGGCTAC	.	74	11	54	1	.	89
KIAA1009	22832	broad.mit.edu	37	6	84894963	84894963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	KIAA1009	NM_014895	exon13	c.C1605A	p.D535E	TATAATGTCCTCT	.	61	3	94	0	.	119
SOBP	55084	broad.mit.edu;ucsc.edu	37	6	107827478	107827478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SOBP	NM_018013	exon3	c.G268T	p.D90Y	CCCGAGGACAGTG	.	50	5	53	1	.	53
NBN	4683	broad.mit.edu	37	8	90983510	90983510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	NBN	NM_002485	exon6	c.C593A	p.P198Q	AGAGGTGGGTAAA	.	222	4	112	0	.	86
PHYHIP	9796	broad.mit.edu	37	8	22079030	22079030	+	Missense_Mutation	SNP	G	G	T	rs199574600	bycluster;alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	PHYHIP	NM_014759	exon5	c.C829A	p.R277S	CGTGGCGGAAGAC	.	26	3	17	0	.	24
SLC39A4	55630	broad.mit.edu	37	8	145640396	145640396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SLC39A4	NM_130849	exon4	c.C766A	p.L256I	TGATGAGGGGCAC	.	64	4	26	0	.	54
SLC7A2	6542	broad.mit.edu	37	8	17415880	17415880	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SLC7A2	NM_001164771	exon8	c.G1392T	p.L464L	CTCTCTGGTGGCA	.	50	4	23	0	.	157
CELP	0	broad.mit.edu	37	9	135962591	135962593	+	RNA	DEL	TGT	TGT	-	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TGCCCCTGTGTCC	.	8	3	7	0	.	.
COX2	4513	broad.mit.edu;bcgsc.ca	37	MT	7929	7929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	ENST00000361739	exon1	c.G344A	p.G115E	ACGGCGGACTAAT	.	1157	30	268	0	.	.
BCOR	54880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	39933623	39933623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	BCOR	NM_001123385	exon4	c.C976A	p.P326T	CCCCCGGCAGGCC	.	45	5	32	0	.	351
PGD	5226	ucsc.edu;bcgsc.ca	37	1	10478978	10478978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	PGD	NM_002631	exon11	c.G1205A	p.C402Y	AAAACTGCCAGGT	.	38	4	41	0	.	39
IL22RA1	58985	ucsc.edu	37	1	24460734	24460734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	IL22RA1	NM_021258	exon4	c.C498A	p.H166Q	CTCTAAGTGGTAG	.	43	4	49	0	.	62
CFHR1	3078	ucsc.edu	37	1	196797357	196797357	+	Silent	SNP	A	A	G	rs76835795		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	CFHR1,NS,carcinoma,0,1	CFHR1	NM_002113	exon4	c.A588G	p.T196T	CTGGACAGAACCA	.	63	13	25	1	A|0.500;G|0.500	47
.	30816	ucsc.edu	37	7	92098628	92098628	+	Silent	SNP	C	C	A	rs200174854	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CATGTCCCCATTT	.	66	15	23	2	.	.
LMO2	4005	ucsc.edu	37	11	33881017	33881017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	LMO2,NS,carcinoma,-1,2	LMO2	NM_005574	exon6	c.A569G	p.K190R	GCGCATTTGAAAC	.	42	4	33	0	.	21
WDTC1	23038	bcgsc.ca	37	1	27609889	27609889	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	WDTC1,NS,carcinoma,+2,1	WDTC1	NM_015023	exon5	c.G240T	p.K80N	CCACAAGAAGCTG	.	15	3	27	0	.	69
.	0	bcgsc.ca	37	1	146019699	146019699	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TCAGGCTTGGGTT	.	144	18	99	0	.	.
BIRC6	57448	bcgsc.ca	37	2	32631613	32631613	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	BIRC6	NM_016252	exon9	c.G1465T	p.D489Y	AGATCAGATTCTG	.	101	4	51	0	.	838
SNX25	83891	bcgsc.ca	37	4	186185626	186185626	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SNX25	NM_031953	exon4	c.G274A	p.A92T	TTGCACGCATGCT	.	121	5	45	0	.	100
ELOVL7	79993	bcgsc.ca	37	5	60067809	60067809	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ELOVL7,NS,lymphoid_neoplasm,0,1	ELOVL7	NM_001104558	exon3	c.G176A	p.R59H	GGCTTGCGATTTT	.	58	4	42	0	.	24
.	0	bcgsc.ca	37	5	110284092	110284092	+	RNA	SNP	A	G	G	rs367881369	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TTCCTCATGGTTG	.	53	10	32	0	.	.
.	0	bcgsc.ca	37	5	110284097	110284097	+	RNA	SNP	T	C	C	rs370268370		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CATGGTTGGCTAA	.	52	10	33	1	.	.
.	653175	bcgsc.ca	37	7	53255583	53255583	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CTTTGTGGGCTTC	.	97	31	67	0	.	.
ZAN	7455	bcgsc.ca	37	7	100349919	100349919	+	Missense_Mutation	SNP	T	C	C	rs200193075	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	ZAN,trunk,malignant_melanoma,0,1	ZAN	.	.	.	.	GAAAAATCCACCA	.	182	24	133	9	T|0.996;C|0.004	658
PRSS1	5644	bcgsc.ca	37	7	142458938	142458938	+	Missense_Mutation	SNP	T	A	A	rs374770738	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	PRSS1	.	.	.	.	AAAATTTTCAGGA	.	55	6	38	0	.	68
.	401525	bcgsc.ca	37	9	68370776	68370776	+	RNA	SNP	G	A	A	rs112484539	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CCCTGGGCACCAG	.	98	25	74	3	G|0.500;A|0.500	.
.	401525	bcgsc.ca	37	9	68370821	68370821	+	RNA	SNP	C	T	T	rs113256212	bycluster	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	GGCGGTCCAAAGT	.	129	24	102	2	C|0.500;T|0.500	.
.	286310	bcgsc.ca	37	9	136102181	136102181	+	RNA	SNP	C	T	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CCGGCTCGTCAGT	.	118	66	160	0	.	.
MARCH8	220972	bcgsc.ca	37	10	46028613	46028613	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	MARCH8	NM_001002266	exon2	c.C47T	p.A16V	GAGATGGCATCCT	.	58	4	45	0	.	29
MUC2	4583	bcgsc.ca	37	11	1093134	1093134	+	Silent	SNP	C	A	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	MUC2	NM_002457	exon30	c.C4953A	p.T1651T	CCCAACCACGACA	.	339	34	174	10	.	614
CD163L1	283316	bcgsc.ca	37	12	7519849	7519849	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	CD163L1	NM_174941	exon18	c.A4262G	p.H1421R	GTCCCATGTGGGT	.	42	4	31	0	.	238
SLC17A8	246213	bcgsc.ca	37	12	100774620	100774620	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	SLC17A8	NM_001145288	exon2	c.G243T	p.M81I	TATCATGAGTGGG	.	45	4	49	0	.	89
.	121727	bcgsc.ca	37	13	90644559	90644559	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TCCTGGCAGCCTA	.	15	3	28	0	.	.
.	246720	bcgsc.ca	37	14	81712881	81712881	+	RNA	SNP	T	A	A	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	CGCATTTTTGATC	.	44	28	42	0	.	.
ZNF676	163223	bcgsc.ca	37	19	22363737	22363737	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	ZNF676	NM_001001411	exon3	c.G782C	p.G261A	CTAAATCCTTTGC	.	71	8	58	1	.	146
.	1550	bcgsc.ca	37	19	41532038	41532038	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	.	.	.	TTGGTGCGCTCCC	.	64	4	45	0	.	.
BRSK1	84446	bcgsc.ca	37	19	55817627	55817627	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	BRSK1	NM_032430	exon17	c.G1898T	p.S633I	TCCCCAGCCTGAG	.	54	4	30	0	.	192
MAGEA1	4100	bcgsc.ca	37	X	152482528	152482528	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	MAGEA1	NM_004988	exon3	c.A483C	p.E161D	GTCTGCTTCCTTC	.	69	24	65	0	.	57
KCNN3	3782	hgsc.bcm.edu	37	1	154842252	154842253	+	Missense_Mutation	DNP	AG	AG	CT	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001204087	exon1	c.C188A	p.P63Q	TGCGGAGGCTGAG	.	44	6	27	0	.	.
THOC5	8563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29913065	29913066	+	Missense_Mutation	DNP	GC	GC	TA	novel		TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	NM_001002878	exon18	c.G1633T	p.A545Y	CCCCAGCCAGTCC	.	71	10	37	0	.	.
UHRF1	29128	hgsc.bcm.edu	37	19	4954681	4954681	+	Silent	SNP	G	G	C	rs80224821	bycluster;alternate_allele	TCGA-W5-AA2U-01A-11D-A417-09	TCGA-W5-AA2U-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0792d270-49b3-4526-9045-86541d7cb765	b017d225-02d9-4581-be93-d2341687c3da	.	.	.	p.A672A	.	.	CAGGGCGGGTCCC	.	42	5	30	0	.	.
