Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
CHD7	55636	hgsc.bcm.edu;bcgsc.ca	37	8	61728947	61728951	+	Frame_Shift_Del	DEL	TCTTA	TCTTA	-	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	TCTTA	TCTTA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_017780	exon8	c.2499_2503del	p.833_835del	TTCAGCTCTTATC	.	90	34	132	0	.	.
GFM1	85476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	158362500	158362511	+	In_Frame_Del	DEL	AGCAGGTACCGG	AGCAGGTACCGG	-	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	AGCAGGTACCGG	AGCAGGTACCGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_024996	exon1	c.76_81del	p.26_27del	AGAGGAAGCAGGT	.	46	11	77	0	.	.
THAP5	168451	hgsc.bcm.edu	37	7	108210000	108210001	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001130475	exon1	c.14_15insT	p.C5fs	GCTGCGCAATAGC	.	52	18	70	0	.	.
ZNF727	442319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63538216	63538216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001159522	exon4	c.A789C	p.K263N	TCACAAAGCCTTT	.	46	9	55	0	.	.
KLK6	5653	hgsc.bcm.edu	37	19	51470530	51470530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	KLK6,colon,carcinoma,0,1	KLK6	NM_001012964	exon3	c.C92A	p.T31K	TGAGATGTCTTGT	.	43	2	47	0	.	0
XRCC6	2547	hgsc.bcm.edu;bcgsc.ca	37	22	42046801	42046801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001469	exon8	c.G1035T	p.L345F	AGGTTTGATGCTC	.	63	4	85	0	.	.
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52440307	52440307	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_004656	exon9	c.A745T	p.K249X	TCACCTTCAGCAC	.	11	8	24	0	.	.
TTN	7273	hgsc.bcm.edu	37	2	179452261	179452261	+	Missense_Mutation	SNP	C	C	T	rs371286595		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	TTN_ENST00000359218,NS,carcinoma,0,5	TTN_ENST00000359218	NM_001267550	exon306	c.G63775A	p.V21259I	CATTTACGAATAC	.	18	2	30	0	.	0
KRTAP12-2	353323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46086661	46086661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_181684	exon1	c.T143C	p.V48A	AAGCTCACGGGCA	.	18	11	53	0	.	.
B4GALT5	9334	hgsc.bcm.edu	37	20	48256337	48256337	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_004776	exon7	c.G795A	p.L265L	AGGAAGCCTAGGA	.	73	4	108	0	.	.
KLK10	5655	hgsc.bcm.edu	37	19	51518101	51518101	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	KLK10,NS,carcinoma,0,1	KLK10	NM_145888	exon6	c.C786A	p.I262I	TTTGCAGATCTGG	.	46	2	50	0	.	0
SIX1	6495	hgsc.bcm.edu	37	14	61115903	61115903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	SIX1,NS,carcinoma,0,1	SIX1	NM_005982	exon1	c.C5T	p.S2L	AGCATCGACATGG	.	16	2	17	0	.	0
PALMD	54873	hgsc.bcm.edu	37	1	100152323	100152323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	PALMD,NS,carcinoma,0,2	PALMD	NM_017734	exon4	c.C343T	p.R115W	ATTGAGCGGACAA	.	35	2	133	0	.	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38121037	38121037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	TRIOBP_ENST00000344404,colon,carcinoma,0,1	TRIOBP_ENST00000344404	NM_001039141	exon7	c.G2474T	p.R825I	TCCCCAGATCATC	.	44	2	86	0	.	0
LBR	3930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	225607439	225607439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	LBR,NS,carcinoma,0,1	LBR	NM_194442	exon4	c.A428G	p.D143G	GGTGCGTCATTTC	.	99	5	63	1	.	0
FTH1	2495	hgsc.bcm.edu	37	11	61734852	61734852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	FTH1,NS,malignant_melanoma,0,1	FTH1	NM_002032	exon1	c.G46T	p.D16Y	CTGAGTCCTGGTG	.	26	3	49	0	.	0
ANKIB1	54467	hgsc.bcm.edu	37	7	92027127	92027127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ANKIB1,NS,carcinoma,0,1	ANKIB1	NM_019004	exon19	c.G2486T	p.R829L	CCCTGCGTGACTA	.	27	2	37	0	.	0
MAP1A	4130	hgsc.bcm.edu	37	15	43818597	43818597	+	Missense_Mutation	SNP	G	G	T	rs372656438		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_002373	exon4	c.G4926T	p.R1642S	CTGGAGGGGGCAG	.	78	3	62	0	.	.
RBFOX1	54715	hgsc.bcm.edu	37	16	7629838	7629838	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	RBFOX1_ENST00000550418,NS,carcinoma,0,3	RBFOX1_ENST00000550418	NM_145891	exon3	c.G390T	p.T130T	AAACACGGAAAAC	.	20	2	54	0	.	0
PSTK	118672	hgsc.bcm.edu	37	10	124742803	124742803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	PSTK,rectum,carcinoma,0,1	PSTK	NM_153336	exon3	c.G524A	p.C175Y	GCTTTTGCCAGCT	.	39	2	52	0	.	0
CYP2F1	1572	hgsc.bcm.edu	37	19	41628798	41628798	+	Silent	SNP	C	C	T	rs374776224		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_000774	exon7	c.C894T	p.G298G	CTTTGGCGGCACC	.	46	4	45	0	.	.
JAKMIP2	9832	hgsc.bcm.edu	37	5	146970683	146970683	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	GAAAAGCAAATCC	.	65	4	74	0	.	.
TTC40	54777	hgsc.bcm.edu	37	10	134646882	134646882	+	Missense_Mutation	SNP	C	C	T	rs138288778		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	C10orf92,NS,carcinoma,0,1	C10orf92	NM_001200049	exon50	c.G7097A	p.R2366H	TGGAGGCGATTCC	.	31	2	52	0	0.000	0
LRRFIP1	9208	hgsc.bcm.edu	37	2	238672115	238672115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	LRRFIP1_ENST00000392000,NS,carcinoma,0,2	LRRFIP1_ENST00000392000	NM_001137552	exon11	c.A1759T	p.T587S	GTAGAAACCCTTA	.	44	2	72	0	.	0
ELMSAN1	91748	hgsc.bcm.edu;bcgsc.ca	37	14	74205859	74205859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_194278	exon2	c.C853A	p.P285T	CCTGGGGTTGCTG	.	46	4	67	0	.	.
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu	37	17	7644290	7644290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_020877	exon10	c.C1669T	p.R557C	CGGCGTCGCATCG	.	10	7	9	0	.	.
GTF3C3	9330	hgsc.bcm.edu	37	2	197657764	197657764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	GTF3C3,colon,carcinoma,0,1	GTF3C3	NM_001206774	exon3	c.G327T	p.E109D	TTCTTCCTCCTCC	.	17	2	27	0	.	0
COL11A1	1301	hgsc.bcm.edu;bcgsc.ca	37	1	103455077	103455077	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_080629	exon29	c.C2427T	p.D809D	TACTCTGTCACCT	.	79	4	225	0	.	.
RAB3IP	117177	hgsc.bcm.edu	37	12	70178544	70178544	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_175623	exon4	c.G603T	p.V201V	AAAAGTGCGAGAT	.	78	3	120	0	.	.
GJA1	2697	hgsc.bcm.edu;bcgsc.ca	37	6	121768335	121768335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	GJA1,NS,carcinoma,0,1	GJA1	NM_000165	exon2	c.G342T	p.K114N	ACTCAAGGTTGCC	.	18	3	60	0	.	0
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102800960	102800960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_018335	exon4	c.G1486A	p.V496M	GTGACCGTGTATG	.	44	24	100	0	.	.
KCNK10	54207	hgsc.bcm.edu	37	14	88693857	88693857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	KCNK10_ENST00000312350,brain,glioma,0,2	KCNK10_ENST00000312350	NM_138318	exon4	c.C543A	p.S181R	TTCAGTGCTCGGA	.	46	2	70	1	.	0
LIM2	3982	hgsc.bcm.edu	37	19	51883801	51883801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_030657	exon4	c.T544C	p.Y182H	GGATGTAGGACCA	.	55	4	41	0	.	.
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72226035	72226035	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_006901	exon18	c.C2538G	p.F846L	GGATTTGAAATTT	.	180	101	183	0	.	.
KIF24	347240	hgsc.bcm.edu;bcgsc.ca	37	9	34259675	34259675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_194313	exon10	c.C1544T	p.A515V	GTTTTGGCATTGC	.	46	4	41	0	.	.
NOX4	50507	hgsc.bcm.edu;broad.mit.edu	37	11	89106611	89106611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	NOX4,colon,carcinoma,0,2	NOX4	NM_001143836	exon12	c.G1124A	p.G375E	CAGTCTCCTACTA	.	53	4	90	0	.	0
COL22A1	169044	hgsc.bcm.edu	37	8	139729078	139729078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	COL22A1,NS,carcinoma,0,1	COL22A1	NM_152888	exon28	c.C2390A	p.P797H	TCTCCAGGTCGGC	.	27	2	34	0	.	0
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86125248	86125248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_007200	exon7	c.G3949A	p.E1317K	CCTGAGGAAGCCA	.	40	14	44	0	.	.
C1orf186	440712	hgsc.bcm.edu	37	1	206243207	206243207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	C1orf186,NS,carcinoma,0,1	C1orf186	NM_001007544	exon3	c.C55A	p.L19I	GGAAGAGGGACAC	.	46	2	28	0	.	0
LAMB3	3914	hgsc.bcm.edu	37	1	209791986	209791986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	LAMB3,NS,malignant_melanoma,0,1	LAMB3	NM_000228	exon19	c.C2720T	p.A907V	ATAGTGGCTGCAT	.	26	2	16	0	.	0
OTUD5	55593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48801512	48801512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001136157	exon2	c.C627A	p.D209E	CTTCTTGTCTCGT	.	33	13	58	0	.	.
CASK	8573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41469246	41469246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001126054	exon12	c.G1066A	p.E356K	GAATCTCTTCCAG	.	75	24	108	0	.	.
MAML2	84441	hgsc.bcm.edu	37	11	95825221	95825221	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	MAML2,NS,carcinoma,0,1	MAML2	NM_032427	exon2	c.G1974A	p.Q658Q	CTGCTGCTGTTGT	.	27	2	48	2	.	0
ZNF100	163227	hgsc.bcm.edu;bcgsc.ca	37	19	21910398	21910398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_173531	exon5	c.G716A	p.G239D	GCTTTGCCACAAT	.	84	4	97	0	.	.
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248263072	248263072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_175911	exon3	c.C395T	p.P132L	ATTATCCTATCCG	.	69	11	37	0	.	.
ZNF557	79230	hgsc.bcm.edu	37	19	7083328	7083328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF557,right_lower_lobe,carcinoma,0,1	ZNF557	NM_001044387	exon8	c.A866G	p.E289G	CGGGGGAGGGTCA	.	50	2	52	0	.	0
ANKHD1	54882	hgsc.bcm.edu	37	5	139885404	139885404	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_017747	exon18	c.C3358T	p.R1120X	TCTGAACGAACTA	.	43	4	59	0	.	.
ZNF583	147949	hgsc.bcm.edu	37	19	56935118	56935118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF583,right_upper_lobe,carcinoma,0,1	ZNF583	NM_001159861	exon5	c.G1091A	p.R364H	GCCATCGTGGATA	.	45	2	42	0	.	0
FBXO10	26267	hgsc.bcm.edu;bcgsc.ca	37	9	37537628	37537628	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_012166	exon3	c.C898A	p.R300R	GGTCCCGGCTCTC	.	65	4	55	0	.	.
LYPLAL1	127018	hgsc.bcm.edu	37	1	219384997	219384997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_138794	exon5	c.G641T	p.S214I	AGCTAAGCAAAAC	.	94	4	70	0	.	.
OR4B1	119765	hgsc.bcm.edu	37	11	48238420	48238420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	OR4B1,right_upper_lobe,carcinoma,0,1	OR4B1	NM_001005470	exon1	c.C59T	p.A20V	ATCCAGCTGTGCA	.	28	2	52	0	.	0
WBP11P1	441818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	30092638	30092638	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	GACACCGACGGAT	.	16	8	22	0	.	.
OSGIN2	734	hgsc.bcm.edu	37	8	90937735	90937735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.,2	.	NM_001126111	exon6	c.G1625T	p.R542I	TTGAAAGAGGAGG	.	48	2	77	0	.	73
STEAP1B	256227	hgsc.bcm.edu;bcgsc.ca	37	7	22533072	22533072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001164460	exon3	c.G468T	p.K156N	CATCCACTTATCC	.	97	4	117	0	.	.
MEF2A	4205	hgsc.bcm.edu	37	15	100211761	100211761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	MEF2A_ENST00000354410,NS,carcinoma,0,3	MEF2A_ENST00000354410	NM_005587	exon5	c.C295T	p.P99S	GACAGCCCAGACC	.	123	5	93	1	.	0
ATP1A2	477	hgsc.bcm.edu	37	1	160097563	160097563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ATP1A2,NS,carcinoma,0,2	ATP1A2	NM_000702	exon8	c.G970A	p.G324S	CTCATCGGCATCA	.	37	2	22	0	.	0
PAXIP1	22976	hgsc.bcm.edu	37	7	154767932	154767932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	PAXIP1,NS,carcinoma,0,1	PAXIP1	NM_007349	exon6	c.C548A	p.P183H	AGACGAGGATGAT	.	36	2	67	0	.	0
ASIC4	55515	hgsc.bcm.edu	37	2	220397179	220397179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ACCN4,NS,carcinoma,0,1	ACCN4	NM_182847	exon4	c.G1379A	p.C460Y	GCCACTGCCGGAT	.	18	2	21	0	.	0
MPZL3	196264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118106178	118106178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_198275	exon4	c.G578A	p.R193K	CCAGACCTGCTCC	.	28	10	50	0	.	.
TRIM40	135644	hgsc.bcm.edu	37	6	30113806	30113806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_138700	exon2	c.G381T	p.K127N	CAGAAAGGACATT	.	40	3	50	0	.	.
ZNF16	7564	hgsc.bcm.edu	37	8	146156248	146156248	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF16,colon,carcinoma,0,1	ZNF16	NM_006958	exon3	c.C1925A	p.S642X	AGGACCGAACGCT	.	41	3	57	0	.	0
SSC5D	284297	hgsc.bcm.edu	37	19	56015484	56015484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001195267	exon13	c.G2787T	p.E929D	TCCAGAGCCGGAA	.	78	4	72	0	.	.
CATSPERB	79820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92105595	92105595	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_024764	exon17	c.1433-1G>A	.	CCATTCCTATTAG	.	46	19	70	0	.	.
TNS3	64759	hgsc.bcm.edu	37	7	47384537	47384537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	TNS3,NS,carcinoma,0,1	TNS3	NM_022748	exon19	c.C2551A	p.P851T	TCTCTGGAGACAC	.	33	2	48	0	.	0
MYO3A	53904	hgsc.bcm.edu	37	10	26310439	26310439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	MYO3A,NS,carcinoma,0,1	MYO3A	NM_017433	exon8	c.C593T	p.A198V	TGATTGCATGTGA	.	37	3	48	0	.	0
GCN1L1	10985	hgsc.bcm.edu	37	12	120622662	120622662	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	GCN1L1,NS,carcinoma,0,1	GCN1L1	NM_006836	exon3	c.C150A	p.L50L	TTTGCAGAGCCCC	.	17	2	33	0	.	0
BAD	572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64051695	64051695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_032989	exon2	c.G146A	p.S49N	TGGTGACTGGCGT	.	23	6	27	0	.	.
SPOCD1	90853	hgsc.bcm.edu	37	1	32280314	32280314	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	SPOCD1,colon,carcinoma,0,1	SPOCD1	NM_144569	exon2	c.G621A	p.K207K	CCATTTCTTTCTT	.	21	2	53	0	.	0
CTAGE7P	119437	hgsc.bcm.edu;bcgsc.ca	37	10	131905462	131905462	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	ATGACTGAATTAT	.	155	16	219	0	.	.
ZNF268	10795	hgsc.bcm.edu	37	12	133764550	133764550	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF268,rectum,carcinoma,0,1	ZNF268	NM_152943	exon3	c.G126T	p.L42L	TGGTCTGCAACCT	.	45	2	72	0	.	0
MYH8	4626	hgsc.bcm.edu	37	17	10303865	10303865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	MYH8,NS,carcinoma,0,1	MYH8	NM_002472	exon27	c.G3577A	p.A1193T	GAGCAGCCACCAT	.	37	2	38	1	.	0
PIP4K2B	8396	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	36934618	36934618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_003559	exon6	c.C662T	p.T221M	GCAACCGTAGAAC	.	25	4	37	0	.	.
VPS33B	26276	hgsc.bcm.edu	37	15	91557064	91557064	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	VPS33B,NS,carcinoma,0,1	VPS33B	NM_018668	exon5	c.C327T	p.R109R	GTATTTGCGAGTT	.	66	4	57	0	.	0
SVOP	55530	hgsc.bcm.edu	37	12	109334559	109334559	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	SVOP_ENST00000299134,NS,carcinoma,0,2	SVOP_ENST00000299134	NM_018711	exon8	c.609+1G>A	.	TACCTACGAAACA	.	27	2	31	0	.	0
COL6A3	1293	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	238280843	238280843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_004369	exon9	c.G3817A	p.V1273I	GGATGACAGCCAC	.	20	4	30	0	.	.
ARMC12	221481	hgsc.bcm.edu	37	6	35716414	35716414	+	Missense_Mutation	SNP	G	G	A	rs200490512	bycluster	TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	C6orf81,colon,carcinoma,0,1	C6orf81	NM_145028	exon6	c.G871A	p.A291T	CGGAACGCACCCC	.	23	2	22	0	.	0
BTN2A3P	54718	hgsc.bcm.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG	.	34	2	43	1	.	0
THRAP3	9967	hgsc.bcm.edu	37	1	36766611	36766611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	THRAP3,NS,carcinoma,0,1	THRAP3	NM_005119	exon10	c.G2428T	p.D810Y	GGCTTTGACAAAT	.	27	3	54	0	.	0
TMPO	7112	hgsc.bcm.edu	37	12	98927571	98927571	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	TMPO_ENST00000266732,NS,carcinoma,0,1	TMPO_ENST00000266732	NM_003276	exon4	c.G1536A	p.Q512Q	CAGGCAGCTGCCT	.	45	3	38	0	.	0
PIP5KL1	138429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130688240	130688240	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001135219	exon8	c.C669T	p.C223C	CACCTCGCAGCCT	.	55	20	105	0	.	.
RAB3B	5865	broad.mit.edu	37	1	52385603	52385603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	RAB3B	NM_002867	exon5	c.G656T	p.C219F	GCCTAGCATGAGC	.	3	2	13	0	.	22
ZC3H11A	9877	broad.mit.edu	37	1	203821424	203821424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ZC3H11A	NM_014827	exon20	c.T2330C	p.I777T	AACTAATATGGGA	.	394	6	283	1	.	71
NAV3	89795	broad.mit.edu;bcgsc.ca	37	12	78362376	78362378	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	NAV3,NS,carcinoma,-2,1	NAV3	NM_014903	exon5	c.565_567del	p.189_189del	CACCATCAACAAC	.	37	8	41	0	.	506
.	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	22386639	22386639	+	RNA	SNP	A	A	C	rs372093887	alternate_allele	TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	CTGCACAGGGGTG	.	29	12	41	0	.	.
BLM	641	broad.mit.edu;bcgsc.ca	37	15	91310162	91310162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	BLM	NM_000057	exon10	c.G2216T	p.G739V	TGACAGGTGATAA	.	178	7	178	1	.	122
TMEM87A	25963	broad.mit.edu	37	15	42519937	42519937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	TMEM87A	NM_015497	exon14	c.T1271C	p.M424T	AACTTCATGGTTG	.	38	3	39	0	.	56
RSAD1	55316	broad.mit.edu	37	17	48560713	48560713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	RSAD1,colon,carcinoma,+1,1	RSAD1	NM_018346	exon6	c.G917T	p.R306L	ATGGACGATTTAT	.	32	3	47	0	.	36
AP2S1	1175	broad.mit.edu	37	19	47349293	47349293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	AP2S1	NM_004069	exon2	c.C110A	p.A37D	ACCACGGCATGCA	.	17	3	21	0	.	12
HMHA1	23526	broad.mit.edu	37	19	1068619	1068619	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	HMHA1	NM_001258328	exon2	c.C345T	p.S115S	CGCCAGCCCGGGC	.	8	3	10	0	.	78
ZNF181	339318	broad.mit.edu	37	19	35232200	35232200	+	Missense_Mutation	SNP	T	T	G	rs143797666		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	ZNF181,NS,carcinoma,0,5	ZNF181	NM_001029997	exon4	c.T914G	p.V305G	GCCATGTCTCATC	.	79	3	88	1	.	65
GON4L	54856	ucsc.edu	37	1	155733245	155733245	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	GON4L_ENST00000368331,NS,carcinoma,0,1	GON4L	NM_001037533	exon22	c.G4584A	p.E1528E	TTCTTCCTCCTCT	.	59	13	50	5	.	392
CACNA1E	777	ucsc.edu	37	1	181765857	181765857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	CACNA1E	NM_001205293	exon47	c.G6262T	p.E2088X	TCAAAAGAGCGAA	.	27	4	18	0	.	778
MUC4	4585	ucsc.edu	37	3	195509287	195509287	+	Missense_Mutation	SNP	T	T	G	rs201610800	bycluster	TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	MUC4	NM_018406	exon2	c.A9164C	p.N3055T	AGAGGGTTGGCGT	.	81	16	85	8	.	1505
SPATS1	221409	ucsc.edu	37	6	44310855	44310855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	SPATS1	NM_145026	exon2	c.G23T	p.G8V	TCACTGGAAACAG	.	35	4	35	0	.	61
CDC27	996	ucsc.edu;bcgsc.ca	37	17	45232055	45232055	+	Missense_Mutation	SNP	C	C	T	rs200268612	bycluster	TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	CDC27	NM_001114091	exon8	c.G940A	p.G314R	GGGCTCCGGTGGA	.	45	22	54	2	.	337
KCNJ14	3770	ucsc.edu	37	19	48967988	48967988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	KCNJ14	NM_013348	exon3	c.C1265A	p.P422Q	CTGCTAGCCCCCG	.	41	4	33	0	.	28
POLR3H	171568	ucsc.edu;bcgsc.ca	37	22	41928664	41928664	+	Silent	SNP	G	G	A	rs369041845		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	POLR3H	NM_001018050	exon3	c.C294T	p.H98H	GTTACCGTGCACT	.	27	4	28	0	.	30
CHD5	26038	bcgsc.ca	37	1	6188616	6188616	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	CHD5	NM_015557	exon24	c.T3673C	p.S1225P	CTTTGGAGGACTG	.	14	3	53	0	.	267
DNAJC16	23341	bcgsc.ca	37	1	15886125	15886125	+	Silent	SNP	T	C	C	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	DNAJC16	NM_015291	exon8	c.T1128C	p.P376P	CTGCCCTGTGAAA	.	23	3	50	0	.	59
ZNF697	90874	bcgsc.ca	37	1	120166656	120166656	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ZNF697	NM_001080470	exon3	c.C310T	p.P104S	GTCCTGGGAACAT	.	14	3	33	0	.	26
FAM117B	150864	bcgsc.ca	37	2	203630387	203630387	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	FAM117B	NM_173511	exon8	c.C1670T	p.T557I	TGTCTACAAACAC	.	22	3	45	0	.	73
ATG16L1	55054	bcgsc.ca	37	2	234164841	234164841	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ATG16L1	NM_198890	exon2	c.G209T	p.R70M	AGATAAGGTATTT	.	46	4	63	0	.	83
ACSL6	23305	bcgsc.ca	37	5	131329781	131329781	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ACSL6	NM_001009185	exon2	c.C213A	p.H71Q	TGGCCGGTGAGTG	.	15	3	31	0	.	169
CTGF	1490	bcgsc.ca	37	6	132270556	132270556	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	CTGF	NM_001901	exon5	c.A898C	p.T300P	GCAGGGTGGTGGT	.	35	9	77	3	.	36
.	114182	bcgsc.ca	37	6	134924992	134924992	+	RNA	SNP	C	T	T	rs112695384	bycluster	TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	AACAAACTAATAA	.	13	7	34	1	C|0.500;T|0.500	.
.	114182	bcgsc.ca	37	6	134925007	134925007	+	RNA	SNP	T	A	A	rs202151939		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	TGTATATAAGAGC	.	13	7	33	1	.	.
.	0	bcgsc.ca	37	7	45856067	45856067	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	GCTGCCCCAGCAG	.	10	3	20	0	.	.
ADAMTSL2	9719	bcgsc.ca	37	9	136405777	136405777	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ADAMTSL2	NM_014694	exon6	c.G470A	p.G157D	TGGACGGCCAGCG	.	48	4	51	0	.	40
.	399857	bcgsc.ca	37	11	3621201	3621201	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	.	.	.	.	GATCCCTGAAATG	.	57	4	101	0	.	.
TENM4	26011	bcgsc.ca	37	11	78449511	78449511	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	.	NM_001098816	exon20	c.G2861A	p.S954N	TGCCTGCTGATTG	.	57	4	85	0	.	.
ARHGAP5	394	bcgsc.ca	37	14	32563150	32563150	+	Missense_Mutation	SNP	C	T	T	rs373639217		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	ARHGAP5	NM_001173	exon2	c.C3275T	p.A1092V	ACTATGCGGAACC	.	66	4	92	0	.	166
HSP90AA1	3320	bcgsc.ca	37	14	102548746	102548746	+	Silent	SNP	G	A	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	HSP90AA1	NM_001017963	exon11	c.C2157T	p.C719C	AATACAGCATGGA	.	44	4	73	0	.	65
GPS1	2873	bcgsc.ca	37	17	80013654	80013654	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	GPS1	NM_212492	exon7	c.G907A	p.A303T	CAGGCTGCCAAGT	.	15	3	27	0	.	30
HSH2D	84941	bcgsc.ca	37	19	16268483	16268483	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2W-01A-11D-A417-09	TCGA-W5-AA2W-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61c59381-50b9-4496-9009-b4232c3000bf	174984c1-38b2-4073-9373-9e603d987161	.	HSH2D	NM_032855	exon9	c.G937T	p.V313L	CAAATGGTAGTGA	.	45	4	58	0	.	16
