Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
TRIOBP	11078	hgsc.bcm.edu	37	22	38120876	38120876	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001039141	exon7	c.C2313A	p.S771S	AACATCCTGTACC	.	82	3	82	0	.	.
KLHL1	57626	hgsc.bcm.edu	37	13	70456537	70456537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	KLHL1,right_lower_lobe,carcinoma,0,1	KLHL1	NM_020866	exon5	c.G1105T	p.V369F	CAGGAACATTGAC	.	24	2	34	0	.	0
PIWIL1	9271	hgsc.bcm.edu;bcgsc.ca	37	12	130832683	130832683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	PIWIL1,NS,carcinoma,0,2	PIWIL1	NM_004764	exon7	c.G689T	p.R230L	TTGGACGAAATTA	.	81	4	60	0	.	0
TAF3	83860	hgsc.bcm.edu	37	10	8019213	8019213	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	TAF3,NS,carcinoma,0,1	TAF3	NM_031923	exon4	c.G2242T	p.E748X	AAAGTGGAACCAG	.	56	3	65	0	.	0
LNP1	348801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	100170610	100170610	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001085451	exon3	c.G204A	p.R68R	TAGAAGGCATTCT	.	39	4	54	0	.	.
PDE3B	5140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	14666369	14666369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_000922	exon1	c.G748T	p.G250C	CTCTCCGGCCTGG	.	23	6	35	0	.	.
ZNF648	127665	hgsc.bcm.edu	37	1	182025729	182025729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ZNF648,right_upper_lobe,carcinoma,0,1	ZNF648	NM_001009992	exon2	c.G1417A	p.E473K	GCCTCTCGCCAGT	.	14	2	21	0	.	0
PRKCI	5584	hgsc.bcm.edu;bcgsc.ca	37	3	169999040	169999040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_002740	exon10	c.G969T	p.Q323H	CTTTCAGACAGAA	.	68	4	49	0	.	.
ZC2HC1A	51101	hgsc.bcm.edu;bcgsc.ca	37	8	79590817	79590817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_016010	exon3	c.G113T	p.C38F	CCATTTGCCAGAA	.	82	4	93	0	.	.
FLRT3	23767	hgsc.bcm.edu	37	20	14307246	14307246	+	Missense_Mutation	SNP	G	G	T	rs150799973	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	FLRT3,colon,carcinoma,0,1	FLRT3	NM_013281	exon2	c.C907A	p.R303S	TGTTGCGAAGAAT	.	45	2	34	0	.	0
GYS1	2997	hgsc.bcm.edu	37	19	49473939	49473939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_002103	exon14	c.G1673A	p.R558H	AGGCTGCGGAACC	.	99	3	96	0	.	.
RPS10	6204	hgsc.bcm.edu	37	6	34392484	34392484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	RPS10,colon,carcinoma,0,1	RPS10	NM_001203245	exon3	c.G284C	p.R95P	CTACGGCGTAGGG	.	57	3	58	1	.	0
DRD1	1812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	174869423	174869423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_000794	exon2	c.G680A	p.R227H	GCAATGCGCCGTA	.	33	10	22	0	.	.
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1628548	1628548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001163809	exon1	c.C295T	p.P99S	AGGCTGCCTGCCG	.	16	6	17	0	.	.
PRKCSH	5589	hgsc.bcm.edu	37	19	11558341	11558341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.,2	.	NM_001001329	exon11	c.G937C	p.E313Q	CCCACAGAGGAGG	.	29	3	22	1	.	55
CUX2	23316	hgsc.bcm.edu	37	12	111747906	111747906	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_015267	exon15	c.C1320A	p.P440P	CTACCCCTCCCCT	.	73	4	84	0	.	.
SV2C	22987	hgsc.bcm.edu	37	5	75427856	75427856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SV2C,colon,carcinoma,0,1	SV2C	NM_014979	exon2	c.A281G	p.Q94R	AGTATCAGGGCAT	.	28	2	27	0	.	0
DNAH3	55567	hgsc.bcm.edu	37	16	21080893	21080893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	DNAH3_ENST00000261383,NS,carcinoma,-1,2	DNAH3_ENST00000261383	NM_017539	exon23	c.G3224T	p.R1075L	TGTATGCGAATTA	.	44	2	34	0	.	-1
DDX11	1663	hgsc.bcm.edu	37	12	31242358	31242358	+	Missense_Mutation	SNP	G	G	A	rs199585751		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_030653	exon8	c.G814A	p.V272M	GAAGACGTGAAAA	.	55	4	53	0	.	.
STRC	161497	hgsc.bcm.edu	37	15	43893654	43893654	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	STRC_ENST00000450892,NS,carcinoma,0,1	STRC_ENST00000450892	NM_153700	exon24	c.C4641A	p.I1547I	CACTAGGATCAGC	.	60	3	67	0	.	0
NFASC	23114	hgsc.bcm.edu	37	1	204956669	204956669	+	Splice_Site	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	NFASC_ENST00000339876,NS,carcinoma,0,2	NFASC_ENST00000339876	NM_015090	exon23	c.2902+1G>A	.	TGGCCTGTACGTT	.	50	2	57	0	.	0
BCAS3	54828	hgsc.bcm.edu	37	17	59112151	59112151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001099432	exon18	c.G1807T	p.D603Y	GAAAAAGGTATGT	.	74	4	47	0	.	.
CLK1	1195	hgsc.bcm.edu	37	2	201718691	201718691	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CLK1_ENST00000434813,colon,carcinoma,0,2	CLK1_ENST00000434813	NM_001162407	exon12	c.C1372A	p.R458R	CTAATCGATCGTG	.	45	3	55	0	.	0
XAGE3	170626	hgsc.bcm.edu;bcgsc.ca	37	X	52893878	52893878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_133179	exon4	c.G239A	p.G80D	CATTCACCCCCAG	.	51	4	31	0	.	.
SCARA5	286133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27764677	27764677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SCARA5,caecum,carcinoma,0,1	SCARA5	NM_173833	exon6	c.C1084T	p.R362C	ACCCACGCATGCC	.	30	7	36	0	.	0
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52440916	52440916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	BAP1,NS,carcinoma,-2,1	BAP1	NM_004656	exon8	c.G588A	p.W196X	CTCCCCCCAGGGC	.	24	12	35	0	.	-2
UNC5A	90249	hgsc.bcm.edu	37	5	176304913	176304913	+	Nonsense_Mutation	SNP	G	G	T	rs149355192	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	UNC5A,mouth,carcinoma,0,1	UNC5A	NM_133369	exon11	c.G1654T	p.E552X	CTGGGCGAGGAGG	.	34	2	35	0	.	0
C7orf62	219557	hgsc.bcm.edu	37	7	88424178	88424178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	C7orf62,right_upper_lobe,carcinoma,0,2	C7orf62	NM_152706	exon2	c.C79A	p.R27S	TGCTACGTGGGAC	.	52	3	52	0	.	0
CDC27	996	hgsc.bcm.edu	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon6	c.G601A	p.V201I	TAAGAACTGTCTC	.	50	6	55	1	.	0
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140093584	140093584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001128228	exon1	c.G1580T	p.R527L	GCCTCCCGTGGCC	.	14	5	18	0	.	.
POU5F1P3	642559	hgsc.bcm.edu	37	12	8287231	8287231	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	ACGCCATCCCCCC	.	146	6	157	0	.	.
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36961673	36961673	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_015384	exon5	c.A446C	p.H149P	TCTCACATAGCCC	.	59	14	43	0	.	.
CHD3	1107	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7798770	7798770	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001005271	exon10	c.C1794T	p.P598P	ACCCCCCCGTCCT	.	27	4	43	0	.	.
AVIL	10677	hgsc.bcm.edu	37	12	58201157	58201157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	AVIL,colon,carcinoma,0,1	AVIL	NM_006576	exon12	c.G1448A	p.R483H	AAGTGGCGTGGCT	.	21	3	38	0	.	0
APH1A	51107	hgsc.bcm.edu	37	1	150238956	150238956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	APH1A,trunk,malignant_melanoma,0,1	APH1A	NM_001077628	exon6	c.G710T	p.R237L	ATACTTCGGAGGG	.	48	3	32	0	.	0
SENP7	57337	hgsc.bcm.edu	37	3	101049208	101049208	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SENP7,rectum,carcinoma,0,1	SENP7	NM_020654	exon20	c.G2721T	p.S907S	CAGTGTCGAAGTA	.	50	2	76	0	.	0
MAML2	84441	hgsc.bcm.edu	37	11	95825221	95825221	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	MAML2,NS,carcinoma,0,1	MAML2	NM_032427	exon2	c.G1974A	p.Q658Q	CTGCTGCTGTTGT	.	31	2	45	0	.	0
OR2A12	346525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143792858	143792858	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001004135	exon1	c.A658T	p.I220F	TTGCACATCCTGG	.	41	18	25	0	.	.
CEP290	80184	hgsc.bcm.edu	37	12	88530507	88530507	+	Nonsense_Mutation	SNP	G	G	T	rs370725951	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_025114	exon6	c.C354A	p.C118X	AAGTTGGCAAATT	.	80	4	83	0	.	.
NDRG3	57446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35315979	35315979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_032013	exon5	c.A236G	p.D79G	TGCATATCCTCAA	.	62	25	53	0	.	.
CLIP4	79745	hgsc.bcm.edu	37	2	29380187	29380187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CLIP4,colon,carcinoma,0,1	CLIP4	NM_024692	exon11	c.C1373A	p.P458H	AAAGCCCTTCCCT	.	56	3	69	0	.	0
OTX2	5015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57268926	57268926	+	Missense_Mutation	SNP	G	G	A	rs376333965	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001270525	exon3	c.C421T	p.P141S	AGGGGGGAGTGAA	.	31	12	31	0	.	.
COPS2	9318	hgsc.bcm.edu	37	15	49420221	49420221	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	COPS2,NS,carcinoma,0,1	COPS2	NM_001143887	exon13	c.C1279T	p.R427X	TATATCGTGCACC	.	40	2	37	0	.	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48314511	48314511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_152701	exon17	c.C5248T	p.L1750F	TATGTGCTTCCTC	.	54	10	53	0	.	.
USPL1	10208	hgsc.bcm.edu	37	13	31205413	31205413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_005800	exon4	c.G670T	p.A224S	CCCCAGGCTTTAT	.	74	3	58	0	.	.
GPS2	2874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7216703	7216703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_004489	exon8	c.G720C	p.Q240H	ACCTGTCTGAGTG	.	28	14	41	0	.	.
RNU5F-1	26828	hgsc.bcm.edu	37	1	220284124	220284124	+	RNA	SNP	A	A	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	TTTTTTAAAGTTA	.	77	4	52	0	.	.
GRIN1	2902	hgsc.bcm.edu	37	9	140053112	140053112	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	GRIN1,NS,carcinoma,0,1	GRIN1	NM_001185091	exon9	c.G1216T	p.E406X	GGCGGAGAGACAG	.	68	3	74	0	.	0
NR2E1	7101	hgsc.bcm.edu	37	6	108501554	108501554	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	NR2E1,caecum,carcinoma,0,1	NR2E1	NM_003269	exon6	c.G670T	p.E224X	TGGAGAGAACTGT	.	39	2	53	0	.	0
ANPEP	290	hgsc.bcm.edu	37	15	90335685	90335685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001150	exon17	c.C2358A	p.N786K	TCACGGGTTATTA	.	47	4	65	0	.	.
RAD54L2	23132	hgsc.bcm.edu	37	3	51696927	51696927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	RAD54L2,colon,carcinoma,0,1	RAD54L2	NM_015106	exon22	c.G3895T	p.V1299F	CCACCCGTCTCCT	.	32	2	34	0	.	0
GPS2	2874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7216573	7216573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_004489	exon9	c.G762T	p.K254N	CATCTGCTTTTGC	.	38	19	33	0	.	.
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44417593	44417593	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_003425	exon10	c.T1995C	p.D665D	ACCCTCATCATCA	.	53	22	37	0	.	.
NETO2	81831	hgsc.bcm.edu	37	16	47117434	47117434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	NETO2,colon,carcinoma,0,1	NETO2	NM_018092	exon9	c.C1276T	p.R426W	AGCGCCGCATCTT	.	39	2	42	0	.	0
ZDHHC21	340481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	14619079	14619079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_178566	exon10	c.C683T	p.P228L	TGCCATGGCTTTC	.	18	9	16	0	.	.
POLE	5426	hgsc.bcm.edu;bcgsc.ca	37	12	133233951	133233951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_006231	exon28	c.C3443A	p.P1148H	GCCGCAGGGATGG	.	45	4	33	0	.	.
ENAM	10117	hgsc.bcm.edu	37	4	71510219	71510219	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ENAM_ENST00000396073,NS,carcinoma,0,1	ENAM_ENST00000396073	NM_031889	exon9	c.G3076T	p.E1026X	CCTGATGAAGGCT	.	32	2	41	0	.	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77700128	77700128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SHROOM3,NS,carcinoma,0,1	SHROOM3	NM_020859	exon11	c.C5789T	p.T1930M	AGTCCACGCTCCT	.	21	2	34	0	.	0
HLA-B	3106	hgsc.bcm.edu	37	6	31322910	31322910	+	Missense_Mutation	SNP	G	G	A	rs74189305	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	HLA-B,NS,carcinoma,-1,4	HLA-B	NM_005514	exon5	c.C986T	p.A329V	ATCACAGCAGCGA	.	54	3	53	2	.	-1
ARSI	340075	hgsc.bcm.edu	37	5	149678175	149678175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001012301	exon2	c.G312T	p.R104S	CTGGTACCTGGTG	.	34	4	20	0	.	.
KPNA5	3841	hgsc.bcm.edu	37	6	117045494	117045494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	KPNA5,caecum,carcinoma,-2,1	KPNA5	NM_002269	exon10	c.A955G	p.R319G	GCATTAAGGGCAG	.	48	2	52	0	.	-2
CD36	948	hgsc.bcm.edu	37	7	80302680	80302680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CD36_ENST00000447544,NS,carcinoma,0,8	CD36_ENST00000447544	NM_001127444	exon11	c.G1209T	p.K403N	ATTAAAGAATCTG	.	50	2	77	0	.	0
MGA	23269	hgsc.bcm.edu	37	15	42046766	42046766	+	Splice_Site	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	MGA,NS,carcinoma,0,1	MGA	NM_001080541	exon17	c.6512+1G>A	.	ACAGCCGTAAGTC	.	44	2	44	0	.	0
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140188703	140188703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	PCDHA4_ENST00000530339,NS,carcinoma,0,2	PCDHA4_ENST00000530339	NM_031500	exon1	c.G1931A	p.R644H	CTCCGCGCCACCG	.	63	20	58	1	.	0
ZNF100	163227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21910728	21910728	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_173531	exon5	c.A386T	p.E129V	ATCGCTTCTTGAA	.	45	21	78	0	.	.
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	60435664	60435664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001042517	exon22	c.G2614T	p.D872Y	TTGTGTCCTTTAG	.	89	9	75	0	.	.
ANKRD62P1-PARP4P3	23783	hgsc.bcm.edu	37	22	17135026	17135026	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	GTAATGTGGTACT	.	33	4	21	0	.	.
MYH13	8735	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	10215287	10215287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_003802	exon32	c.C4472T	p.A1491V	TCATAGGCATTCC	.	33	4	36	0	.	.
GPR144	347088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	127239301	127239301	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001161808	exon20	c.C2814T	p.S938S	GCACAGCCTGCCT	.	61	10	66	0	.	.
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1384109	1384109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001080779	exon6	c.G698T	p.G233V	CGCTCCCCATGAT	.	68	33	79	0	.	.
GPR37	2861	hgsc.bcm.edu	37	7	124404434	124404434	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_005302	exon1	c.G597A	p.K199K	GGCCGTCTTGGAC	.	79	3	90	0	.	.
BRD2	6046	hgsc.bcm.edu	37	6	32945701	32945701	+	Missense_Mutation	SNP	G	G	T	rs200978040	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	BRD2_ENST00000395289,uveal_tract,malignant_melanoma,0,1	BRD2_ENST00000395289	NM_005104	exon9	c.G1497T	p.E499D	AGATGAGGAGGAC	.	23	4	36	1	.	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169509839	169509839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_004946	exon52	c.G5470A	p.D1824N	ATCCCAGACTCGC	.	54	18	37	0	.	.
OGDHL	55753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50960205	50960205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_018245	exon5	c.C568A	p.L190M	CCCGCAGAGAGAG	.	30	7	43	0	.	.
PCNXL2	80003	hgsc.bcm.edu	37	1	233275579	233275579	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.,1	.	NM_014801	exon20	c.C3540T	p.F1180F	TCTTTCGAACCAC	.	76	3	85	0	.	204
WEE2	494551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141429375	141429375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001105558	exon11	c.C1580T	p.T527I	GATATACCCATCA	.	54	9	46	0	.	.
ZDHHC6	64429	hgsc.bcm.edu	37	10	114190585	114190585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ZDHHC6,NS,carcinoma,0,1	ZDHHC6	NM_022494	exon11	c.G1219T	p.E407X	CCCCCTCTGGGGC	.	47	2	68	0	.	0
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	79941034	79941034	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_153252	exon36	c.G4007C	p.G1336A	TGATGACCCTATT	.	51	34	36	0	.	.
SASH1	23328	hgsc.bcm.edu	37	6	148792601	148792601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SASH1,NS,carcinoma,0,2	SASH1	NM_015278	exon6	c.G476T	p.R159L	ACTTCCGAAAGAA	.	75	3	124	0	.	0
SH3PXD2A	9644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105526913	105526913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_014631	exon3	c.T168A	p.D56E	AAACTTATCCAAA	.	18	4	48	0	.	.
SNX21	90203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44463735	44463735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_033421	exon3	c.G427A	p.D143N	GTCAAGGACCCGC	.	26	8	19	0	.	.
OR10H4	126541	hgsc.bcm.edu	37	19	16060516	16060516	+	Silent	SNP	C	C	T	rs370722157		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	OR10H4,NS,carcinoma,0,1	OR10H4	NM_001004465	exon1	c.C699T	p.A233A	CTCTGCCGAAGGC	.	41	2	30	0	.	0
FAM105A	54491	hgsc.bcm.edu;bcgsc.ca	37	5	14601188	14601188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_019018	exon2	c.G179T	p.C60F	CCATCTGCTACTT	.	47	4	47	0	.	.
DNAJC6	9829	hgsc.bcm.edu	37	1	65855273	65855273	+	Silent	SNP	C	C	T	rs139447717		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	DNAJC6,NS,carcinoma,0,1	DNAJC6	NM_001256864	exon11	c.C1431T	p.Y477Y	GCATTACGGACAA	.	48	2	37	0	0.000	0
RBP2	5948	hgsc.bcm.edu	37	3	139173596	139173596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	RBP2,NS,carcinoma,0,1	RBP2	NM_004164	exon3	c.G329T	p.W110L	TCAATCCACTGCT	.	25	2	37	0	.	0
MRAP2	112609	hgsc.bcm.edu	37	6	84772626	84772626	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_138409	exon3	c.G142T	p.G48X	GTGATTGGATTTT	.	52	4	56	0	.	.
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140230059	140230059	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_031857	exon1	c.C1979G	p.T660R	CGCTGACGGCCAC	.	70	21	50	0	.	.
LONRF1	91694	hgsc.bcm.edu	37	8	12586483	12586483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	LONRF1,NS,carcinoma,0,1	LONRF1	NM_152271	exon10	c.G1937T	p.R646L	CTAAACCGCTTTC	.	34	3	48	0	.	0
RPSAP58	388524	hgsc.bcm.edu	37	19	24010294	24010294	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	RPSAP58_ENST00000496398,NS,carcinoma,0,40	RPSAP58_ENST00000496398	.	.	.	.	ACTAACCAGATCC	.	25	2	34	0	.	0
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120438659	120438659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ADAM30,hand,carcinoma,0,1	ADAM30	NM_021794	exon1	c.G301A	p.E101K	GATCCTCCAGCAG	.	44	14	37	0	.	0
ZP1	22917	hgsc.bcm.edu;bcgsc.ca	37	11	60638604	60638604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_207341	exon5	c.G1001T	p.G334V	ACTGTGGAACCAC	.	48	4	49	0	.	.
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	102124680	102124680	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_175768	exon4	c.723+1G>T	.	AAACAGGTAACCT	.	53	21	62	0	.	.
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	110131447	110131447	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_003301	exon2	c.C960A	p.Y320X	GATTTACAATCTC	.	51	14	41	0	.	.
TPR	7175	hgsc.bcm.edu	37	1	186304588	186304588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	TPR_ENST00000367478,NS,carcinoma,-1,2	TPR_ENST00000367478	NM_003292	exon34	c.G4793A	p.R1598H	GTAATGCGAACAT	.	40	2	43	0	.	-1
CLK3	1198	hgsc.bcm.edu	37	15	74922183	74922183	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	CLK3_ENST00000454830,NS,carcinoma,0,2	CLK3_ENST00000454830	NM_001130028	exon13	c.G1876T	p.E626X	ACCCCTGAGGAGC	.	24	2	26	0	.	0
GRM1	2911	hgsc.bcm.edu	37	6	146720582	146720582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	GRM1_ENST00000392299,NS,carcinoma,0,2	GRM1_ENST00000392299	NM_000838	exon8	c.C2407T	p.P803S	TTTGTGCCCATTT	.	34	2	24	0	.	0
SLCO2A1	6578	hgsc.bcm.edu	37	3	133657273	133657273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	SLCO2A1,NS,carcinoma,0,1	SLCO2A1	NM_005630	exon12	c.G1690A	p.A564T	ACTTACCCAGCAA	.	31	2	47	0	.	0
PTPN2	5771	hgsc.bcm.edu	37	18	12802116	12802116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	PTPN2,colon,carcinoma,0,1	PTPN2	NM_001207013	exon9	c.C962A	p.S321Y	GCAGGAGATAAGT	.	49	3	46	0	.	0
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110431382	110431382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_177531	exon22	c.C2417A	p.T806K	CTGGGACAAATGT	.	53	17	36	0	.	.
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	48565379	48565379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001159322	exon14	c.G1163A	p.R388Q	TGCTTCCGGCTGC	.	35	5	27	0	.	.
OSBP	5007	hgsc.bcm.edu	37	11	59369134	59369134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	OSBP,colon,carcinoma,0,1	OSBP	NM_002556	exon4	c.G1000C	p.G334R	CATTGCCAGGAGT	.	35	2	32	0	.	0
CDCA7	83879	hgsc.bcm.edu;bcgsc.ca	37	2	174231093	174231093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_031942	exon8	c.G1118A	p.G373D	TTCGAGGCCAGTT	.	56	4	76	0	.	.
HDLBP	3069	hgsc.bcm.edu	37	2	242189360	242189360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	HDLBP,NS,carcinoma,+1,1	HDLBP	NM_005336	exon12	c.C1408A	p.R470S	GGATGCGCACGGA	.	45	2	41	0	.	+1
TSC2	7249	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	2126499	2126499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_001114382	exon25	c.G2750T	p.R917L	GCCTGCGGTCCAA	.	22	4	28	0	.	.
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50290700	50290700	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	ATP9A,NS,malignant_melanoma,0,2	ATP9A	NM_006045	exon11	c.C1029T	p.I343I	AATGGGGATGATG	.	39	8	35	0	.	0
FMN2	56776	broad.mit.edu;bcgsc.ca	37	1	240371322	240371322	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	FMN2	NM_020066	exon5	c.C3210T	p.P1070P	TCTACCCGGAGCG	.	62	10	54	0	.	451
STIL	6491	broad.mit.edu	37	1	47770618	47770618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	STIL	NM_003035	exon3	c.C95T	p.A32V	CAAAGTGCACATT	.	163	4	145	0	.	91
OR5M11	219487	broad.mit.edu	37	11	56309838	56309838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	OR5M11	NM_001005245	exon1	c.C896A	p.A299D	TTCAAGGCCTGCT	.	28	3	34	0	.	60
SPTBN2	6712	broad.mit.edu;bcgsc.ca	37	11	66460137	66460137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	SPTBN2	NM_006946	exon25	c.G5060A	p.R1687Q	CGCTCCCGCCGCT	.	8	4	22	0	.	188
PPP1R1A	5502	broad.mit.edu	37	12	54976556	54976556	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	PPP1R1A_ENST00000257905,NS,carcinoma,-2,2	PPP1R1A	NM_006741	exon4	c.G207A	p.R69R	CCGTTGCCGTGGA	.	50	3	66	0	.	18
RFC3	5983	broad.mit.edu;bcgsc.ca	37	13	34398073	34398073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	RFC3	NM_002915	exon3	c.T245A	p.I82N	AAAAAATTGAAAT	.	212	6	217	0	.	40
.	0	broad.mit.edu;bcgsc.ca	37	14	22616076	22616076	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	ATTCTTTGGATTC	.	45	5	43	0	.	.
ERVK13-1	0	broad.mit.edu	37	16	2712543	2712543	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	GGAGCCCAATCAA	.	62	6	69	1	.	.
GPS2	2874	broad.mit.edu;bcgsc.ca	37	17	7216378	7216378	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	GPS2	NM_004489	exon10	c.G870C	p.Q290H	AGGGAGCTGGGGG	.	7	3	18	0	.	44
TTC27	55622	broad.mit.edu	37	2	32891802	32891802	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	TTC27	NM_017735	exon7	c.T906C	p.T302T	ATTCACTCCAGCA	.	64	3	52	0	.	71
BMP2	650	broad.mit.edu	37	20	6759625	6759625	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	BMP2	NM_001200	exon3	c.C1080T	p.C360C	GGCATGCTGTGTC	.	29	3	41	0	.	45
MUC4	4585	broad.mit.edu	37	3	195508902	195508902	+	Silent	SNP	C	C	G	rs79929234		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	MUC4_ENST00000463781,NS,malignant_melanoma,-1,2	MUC4	NM_018406	exon2	c.G9549C	p.T3183T	AAGAGGCGTGGTG	.	131	6	87	0	C|0.500;G|0.500	1505
LOC201651	0	broad.mit.edu	37	3	151491023	151491023	+	RNA	DEL	T	T	-	rs372396689		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	CTTTACTTTTTTT	.	6	2	5	0	.	.
.	0	broad.mit.edu	37	5	179121146	179121151	+	RNA	DEL	AAAAAA	AAAAAA	-	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	CGTCTCAAAAAAA	.	8	1	6	0	.	.
CYP3A43	64816	broad.mit.edu	37	7	99445221	99445221	+	Missense_Mutation	SNP	G	G	T	rs373256715	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	CYP3A43	NM_057096	exon5	c.G429T	p.K143N	ATTCAAGGAAGTA	.	52	3	62	1	.	52
HAS2	3037	broad.mit.edu	37	8	122626911	122626911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	HAS2	NM_005328	exon4	c.C1097A	p.A366E	CACATTGCATTGT	.	40	3	53	0	.	87
TUBBP5	0	broad.mit.edu	37	9	141069223	141069223	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	AAGACGTGGGAGG	.	52	5	44	1	.	.
RNR2	0	broad.mit.edu	37	MT	2534	2534	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	GTATTAGAGGCAC	.	964	7	263	0	.	.
FAT1	2195	ucsc.edu;bcgsc.ca	37	4	187539158	187539158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	FAT1	NM_005245	exon10	c.C8582T	p.A2861V	TTAATGGCAAAGG	.	33	4	39	0	.	500
PHF15	0	ucsc.edu	37	5	133871604	133871604	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	PHF15	NM_015288	exon2	c.C57T	p.D19D	CACTGACAGTAAG	.	39	4	35	0	.	60
EEF1A1	1915	ucsc.edu	37	6	74227940	74227940	+	Silent	SNP	A	A	C	rs71481399	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	EEF1A1,bladder,carcinoma,-2,1	EEF1A1	NM_001402	exon7	c.T1077G	p.P359P	CAATACAGGGGCA	.	44	6	49	1	C|1.000;|0.000	56
RORB	6096	ucsc.edu;bcgsc.ca	37	9	77300435	77300435	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	RORB	NM_006914	exon10	c.G1281T	p.L427L	GAAGCTGCAGGTA	.	39	4	29	0	.	89
USP8	9101	ucsc.edu	37	15	50785016	50785016	+	Missense_Mutation	SNP	A	A	G	rs41475144	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	USP8,NS,carcinoma,0,3	USP8	NM_001128610	exon15	c.A2353G	p.T785A	GGAAATACTTGTT	.	37	9	25	1	G|1.000;|0.000	90
USP8	9101	ucsc.edu	37	15	50785054	50785054	+	Silent	SNP	C	C	T	rs199814360		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	USP8	NM_001128610	exon15	c.C2391T	p.N797N	ATGTAACGCTCCA	.	34	8	24	0	.	90
ITGB3	3690	ucsc.edu	37	17	45368459	45368459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	ITGB3	.	.	.	.	CGGTGAGGTGGGC	.	25	4	33	0	.	157
ATP13A1	57130	ucsc.edu;bcgsc.ca	37	19	19765461	19765461	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	ATP13A1	NM_020410	exon13	c.C1704T	p.H568H	GGCCCGGTGTGTT	.	26	4	29	0	.	82
GPR32	2854	ucsc.edu	37	19	51274851	51274851	+	Missense_Mutation	SNP	A	A	C	rs78840344	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	GPR32,NS,carcinoma,0,5	GPR32	NM_001506	exon1	c.A994C	p.T332P	TCTTTGACTTCTG	.	45	5	52	1	.	68
PNPT1	87178	bcgsc.ca	37	2	55874589	55874589	+	Splice_Site	SNP	C	A	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	PNPT1	NM_033109	exon20	c.1496-1G>T	.	GAACCCCTATAAT	.	148	5	144	0	.	68
DGKG	1608	bcgsc.ca	37	3	186038225	186038225	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	DGKG	NM_001346	exon2	c.C24A	p.S8S	AGTGAGGGAGACC	.	59	4	72	0	.	98
LOC647323	0	bcgsc.ca	37	3	193677710	193677710	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	TCCTGGGAGGTGA	.	39	4	52	0	.	.
NAF1	92345	bcgsc.ca	37	4	164050118	164050118	+	Silent	SNP	A	G	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	NAF1	NM_138386	exon8	c.T1416C	p.P472P	AGGGGGAGGGGGT	.	25	12	69	1	.	69
NAF1	92345	bcgsc.ca	37	4	164050124	164050124	+	Silent	SNP	T	G	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	NAF1	NM_138386	exon8	c.A1410C	p.P470P	AGGGGGTGGGGGT	.	28	13	67	2	.	69
.	0	bcgsc.ca	37	6	112937924	112937924	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	TCATTTTCTTCTA	.	30	4	47	0	.	.
PRSS1	5644	bcgsc.ca	37	7	142460339	142460339	+	Missense_Mutation	SNP	G	A	A	rs200973660	bycluster	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	PRSS1	NM_002769	exon4	c.G512A	p.C171Y	CTAAGTGTGAAGC	.	89	13	92	2	.	68
.	389626	bcgsc.ca	37	8	11786595	11786595	+	RNA	SNP	A	G	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	GGAAAAAGGACAC	.	65	4	81	0	.	.
CSPP1	79848	bcgsc.ca	37	8	68028315	68028315	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	CSPP1	NM_024790	exon11	c.G1439T	p.R480L	ATTTGCGCAGTGG	.	57	4	64	0	.	129
.	120824	bcgsc.ca	37	11	49002943	49002943	+	RNA	SNP	A	G	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	.	.	.	.	CAGAACATCTCCT	.	83	19	115	0	.	.
ANKRD13D	338692	bcgsc.ca	37	11	67068427	67068427	+	Missense_Mutation	SNP	G	T	T	rs368733850	alternate_allele	TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	ANKRD13D	.	.	.	.	CCAGCCGTGCCTC	.	23	3	35	0	.	71
OR6X1	390260	bcgsc.ca	37	11	123624820	123624820	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	OR6X1	NM_001005188	exon1	c.G407A	p.S136N	AGTTTGCTGGTCA	.	17	3	28	0	.	54
TMEM260	54916	bcgsc.ca	37	14	57114069	57114069	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	.	NM_017799	exon16	c.C1978A	p.P660T	GCAGATCCTGAAG	.	32	3	51	0	.	.
KIAA0317	0	bcgsc.ca	37	14	75179687	75179687	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	KIAA0317	.	.	.	.	TGGGAAGGGGCGG	.	36	4	54	0	.	68
ZNF271	10778	bcgsc.ca	37	18	32889539	32889539	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	ZNF271	.	.	.	.	ACTGAAGGACAGG	.	22	3	40	0	.	16
PRKCSH	5589	bcgsc.ca	37	19	11560245	11560245	+	Splice_Site	SNP	T	G	G	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	PRKCSH	NM_002743	exon17	c.1603+2T>G	.	CAGAGGTGGGCGG	.	16	12	22	2	.	55
CSE1L	1434	bcgsc.ca	37	20	47712955	47712955	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	CSE1L	NM_001316	exon25	c.G2896T	p.A966S	CAGGCAGCCAGTG	.	49	4	30	0	.	83
CARD10	29775	bcgsc.ca	37	22	37888537	37888537	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	CARD10	NM_014550	exon18	c.C2656A	p.L886M	GGCACAGTTCCTC	.	59	4	56	0	.	55
GPC3	2719	bcgsc.ca	37	X	133119350	133119350	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA31-01A-11D-A417-09	TCGA-W5-AA31-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d14106d7-8efd-42d5-b203-5e2ede2aa7d8	619671b3-2530-4b47-bd7a-eaaa2c6e9e23	.	GPC3	NM_001164617	exon1	c.C127A	p.Q43K	GTCTCTGGAAGAA	.	57	4	60	0	.	88
