Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
PIGS	94005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	26898172	26898174	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_033198	exon2	c.68_70del	p.23_24del	CGCAGCGAAGAAG	.	58	16	52	0	.	.
IRF5	3663	hgsc.bcm.edu	37	7	128587352	128587381	+	In_Frame_Del	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001098629	exon6	c.549_578del	p.183_193del	CCGCCCACTCTGC	.	10	3	7	2	.	.
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	ADAMTS7,NS,neuroblastoma,0,1	ADAMTS7	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	22	2	22	1	.	0
ZBTB44	29068	hgsc.bcm.edu	37	11	130108461	130108461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_014155	exon4	c.C1145A	p.P382H	GTGGAAGGAGCAA	.	61	4	46	0	.	.
LRRC66	339977	hgsc.bcm.edu	37	4	52860592	52860592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001024611	exon4	c.C2596A	p.P866T	TATCAGGATCTGA	.	99	4	53	0	.	.
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41525850	41525850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001142446	exon40	c.C5452T	p.R1818W	GCCTCCGGTCCCT	.	47	22	22	0	.	.
PSD	5662	hgsc.bcm.edu;bcgsc.ca	37	10	104172214	104172214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001270965	exon7	c.G1672A	p.A558T	GCTGCGCAGCCTC	.	61	4	34	0	.	.
ACVR1C	130399	hgsc.bcm.edu	37	2	158443750	158443750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_145259	exon2	c.G253A	p.E85K	AGCATTCGGTTTT	.	94	4	54	0	.	.
CELF6	60677	hgsc.bcm.edu;bcgsc.ca	37	15	72582500	72582500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CELF6,NS,carcinoma,0,1	CELF6	NM_001172684	exon4	c.C491T	p.T164M	AGGACCGTGCACT	.	61	4	64	0	.	0
THEG	51298	hgsc.bcm.edu	37	19	367205	367205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	THEG,NS,carcinoma,0,1	THEG	NM_016585	exon7	c.C773A	p.A258E	TGGGCTGCCCTGG	.	40	2	31	0	.	0
ATCAY	85300	hgsc.bcm.edu	37	19	3910859	3910859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_033064	exon8	c.G838T	p.V280L	CGGACTGTGCTGG	.	43	4	13	0	.	.
GPR64	10149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	19021009	19021009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001184834	exon24	c.A2185G	p.T729A	TGTAAGTATTAAA	.	122	37	78	0	.	.
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	86373133	86373133	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_013244	exon7	c.G1371A	p.R457R	ATATATCCTCATA	.	96	30	39	0	.	.
H2AFV	94239	hgsc.bcm.edu	37	7	44874113	44874113	+	Missense_Mutation	SNP	T	T	C	rs1802437	bycluster;by2hit2allele	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_012412	exon5	c.A374G	p.Q125R	GTTTTCTGCTGTC	.	88	4	81	0	0.001	.
RAD54L2	23132	hgsc.bcm.edu	37	3	51675865	51675865	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	RAD54L2,NS,carcinoma,0,1	RAD54L2	NM_015106	exon14	c.C2332T	p.R778X	TGGGTTCGAAACA	.	48	2	36	0	.	0
DCXR	51181	hgsc.bcm.edu	37	17	79994159	79994159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	DCXR,NS,carcinoma,0,1	DCXR	NM_016286	exon7	c.C539A	p.T180K	ACCACTGTGGGGT	.	27	2	11	0	.	0
PREX1	57580	hgsc.bcm.edu	37	20	47258999	47258999	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	PREX1_ENST00000396220,NS,carcinoma,0,2	PREX1_ENST00000396220	NM_020820	exon28	c.C3630A	p.I1210I	AGATGGGATCCGC	.	49	2	16	0	.	0
C4orf17	84103	hgsc.bcm.edu	37	4	100460497	100460497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	C4orf17,NS,carcinoma,0,1	C4orf17	NM_032149	exon7	c.C806A	p.T269N	TGCTGACCAGAGA	.	31	2	23	0	.	0
OTOP1	133060	hgsc.bcm.edu	37	4	4204211	4204211	+	Missense_Mutation	SNP	G	G	A	rs200612216		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	OTOP1,NS,carcinoma,0,3	OTOP1	NM_177998	exon4	c.C694T	p.R232W	TGAGCCGTTCCTT	.	49	5	24	0	.	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu	37	4	187525601	187525601	+	Missense_Mutation	SNP	G	G	A	rs200357548	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	FAT1,bladder,carcinoma,+1,2	FAT1	NM_005245	exon18	c.C10478T	p.P3493L	CCTTGCGGGTTAA	.	92	4	59	0	.	+1
KCNH2	3757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150644044	150644044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000238	exon14	c.C3251T	p.P1084L	GGCCCCGGGGTGG	.	27	12	23	0	.	.
EFTUD2	9343	hgsc.bcm.edu	37	17	42937901	42937901	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	EFTUD2,NS,carcinoma,0,1	EFTUD2	NM_004247	exon17	c.G1618T	p.E540X	TCACCTCGATGTG	.	63	3	23	0	.	0
LILRB4	11006	hgsc.bcm.edu	37	19	55179365	55179365	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	LILRB4,NS,carcinoma,0,1	LILRB4	NM_006847	exon12	c.G1242A	p.Q414Q	CGCCCAGCTGCAC	.	93	3	61	0	.	0
IKBKAP	8518	hgsc.bcm.edu	37	9	111681574	111681574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_003640	exon7	c.A608G	p.D203G	TGTCCATCCCCCC	.	86	4	105	0	.	.
CDC27	996	hgsc.bcm.edu	37	17	45234708	45234708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CDC27,NS,malignant_melanoma,0,1	CDC27	NM_001114091	exon6	c.T518C	p.L173S	TTCTGTAAAGATG	.	76	4	43	0	.	0
PPP1R3A	5506	hgsc.bcm.edu	37	7	113518127	113518127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002711	exon4	c.C3020A	p.S1007Y	CCTAGAGATTTTT	.	59	4	23	0	.	.
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62289154	62289154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001620	exon5	c.C12735G	p.F4245L	CATCTTGAATTTA	.	136	56	104	0	.	.
PAX4	5078	hgsc.bcm.edu	37	7	127253566	127253566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	PAX4,NS,carcinoma,0,1	PAX4	NM_006193	exon5	c.C559A	p.P187T	AATCAGGATACTG	.	46	2	29	0	.	0
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	35579781	35579781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_080872	exon9	c.G1171A	p.V391M	GCCGTCGTGGCCG	.	47	5	32	0	.	.
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43959624	43959624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_018964	exon7	c.G353T	p.G118V	TCAGTGGCATCAT	.	38	4	48	0	.	.
HLA-DOA	3111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32975954	32975954	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002119	exon2	c.A167T	p.Q56L	AACAGCTGTTCCT	.	61	21	32	0	.	.
HTT	3064	hgsc.bcm.edu	37	4	3076659	3076659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002111	exon1	c.A107C	p.Q36P	AGCAGCAGCAACA	.	16	4	7	0	.	.
CUBN	8029	hgsc.bcm.edu	37	10	16990489	16990489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CUBN,NS,carcinoma,0,1	CUBN	NM_001081	exon35	c.G5197A	p.A1733T	CTGATGCGGTGAC	.	64	3	56	0	.	0
LHFPL3-AS1	645591	hgsc.bcm.edu	37	7	104440319	104440319	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CCACTGCCCAAGC	.	55	4	33	0	.	.
CXADRP3	440224	hgsc.bcm.edu;bcgsc.ca	37	18	14478921	14478921	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CTGTGCCAATATC	.	88	4	42	0	.	.
NXPE3	91775	hgsc.bcm.edu	37	3	101535686	101535686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_145037	exon7	c.G970T	p.G324W	CCTTCTGGGTATT	.	92	4	57	0	.	.
PPM1J	333926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	113253388	113253388	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_005167	exon8	c.C1196G	p.P399R	AGAAAGGGCTTGA	.	96	7	37	0	.	.
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	61654449	61654449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_017780	exon2	c.C458A	p.P153Q	AGGTACCAGACCA	.	31	10	23	0	.	.
SLC25A26	115286	hgsc.bcm.edu	37	3	66293723	66293723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	SLC25A26,bladder,carcinoma,0,1	SLC25A26	NM_173471	exon4	c.C287A	p.S96Y	CTGCCTCTGCTGG	.	27	2	19	0	.	0
REV3L	5980	hgsc.bcm.edu;bcgsc.ca	37	6	111697468	111697468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002912	exon13	c.C2090A	p.P697H	TCGTTAGGGTGAC	.	73	4	37	0	.	.
NCAM1	4684	hgsc.bcm.edu	37	11	113105856	113105856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NCAM1_ENST00000433634,colon,carcinoma,0,4	NCAM1_ENST00000433634	NM_001242607	exon16	c.G1873A	p.A625T	ATCAGCGCGGCCT	.	45	2	41	0	.	0
INTS12	57117	hgsc.bcm.edu	37	4	106614585	106614585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_020395	exon5	c.C368A	p.P123Q	GTTTCTGGTTTCT	.	100	4	61	0	.	.
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6153555	6153555	+	Missense_Mutation	SNP	G	G	A	rs61748471	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000552	exon18	c.C2344T	p.R782W	CAGCCCGCAGGTT	.	93	32	46	0	0.000	.
OR7E2P	8587	hgsc.bcm.edu	37	11	86568090	86568090	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CACAAGAGAAAGG	.	12	6	16	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195511156	195511156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	MUC4_ENST00000463781,colon,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.G7295C	p.R2432P	GGAAGACGGGTGG	.	229	10	100	0	.	0
LCOR	84458	hgsc.bcm.edu	37	10	98708964	98708964	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001170766	exon6	c.C150T	p.N50N	TCAGAACCCTGTG	.	76	4	53	0	.	.
OR10G3	26533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	22038258	22038258	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	OR10G3,NS,carcinoma,0,1	OR10G3	NM_001005465	exon1	c.G618T	p.V206V	AACCACCACCCCA	.	50	15	42	0	.	0
FNDC3A	22862	hgsc.bcm.edu;broad.mit.edu	37	13	49688844	49688844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001079673	exon4	c.G229T	p.V77L	ATCTATGTGCCTC	.	54	4	45	0	.	.
DNAJC19	131118	hgsc.bcm.edu	37	3	180702477	180702477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_145261	exon6	c.C302A	p.A101D	ATTTTGGCTGCTA	.	69	4	24	0	.	.
OR56A5	390084	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	5989177	5989177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001146033	exon1	c.C548T	p.T183I	ACGTTAGTACAGA	.	52	8	51	0	.	.
CHERP	10523	hgsc.bcm.edu	37	19	16640580	16640580	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CHERP,NS,carcinoma,0,2	CHERP	NM_006387	exon8	c.A1008G	p.Q336Q	CTGCTGTTGCTGC	.	37	2	40	0	.	0
TRPC5	7224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	111155791	111155791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_012471	exon3	c.G628T	p.A210S	ATAAGGCAATGAG	.	30	18	12	0	.	.
EPHA7	2045	hgsc.bcm.edu	37	6	93953157	93953157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	EPHA7,caecum,carcinoma,0,1	EPHA7	NM_004440	exon17	c.G2984A	p.G995D	TGAATGCCAGTTC	.	50	3	42	0	.	0
CALHM3	119395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105238524	105238524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001129742	exon1	c.G266A	p.R89K	TCCTTCCTCCGGT	.	27	7	21	0	.	.
SEMA5A	9037	hgsc.bcm.edu	37	5	9202072	9202072	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_003966	exon9	c.C927A	p.T309T	CACATTGGTGGTA	.	51	4	26	0	.	.
SMARCA4	6597	hgsc.bcm.edu	37	19	11097625	11097625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.,1	.	NM_003072	exon5	c.C805T	p.P269S	GGCGTGCCCCCCG	.	33	3	14	0	.	502
HYAL3	8372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50332983	50332983	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001200030	exon2	c.G51A	p.L17L	ACAACCCAGGCAC	.	13	9	29	0	.	.
QPCT	25797	hgsc.bcm.edu	37	2	37586829	37586829	+	Missense_Mutation	SNP	G	G	T	rs372851223	alternate_allele	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_012413	exon3	c.G374T	p.S125I	TCATCAGCACCCT	.	79	3	46	0	.	.
LRP5	4041	hgsc.bcm.edu	37	11	68115583	68115583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_002335	exon2	c.G360T	p.K120N	GGGCAAGAAGCTG	.	55	4	44	0	.	.
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68265039	68265039	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_015346	exon11	c.G1940C	p.S647T	ACATGGCTTGGCA	.	48	6	70	0	.	.
PTTG1IP	754	hgsc.bcm.edu	37	21	46271541	46271541	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	PTTG1IP_ENST00000445724,NS,carcinoma,0,2	PTTG1IP_ENST00000445724	NM_004339	exon6	c.C498A	p.G166G	AAACAGGCCTGAA	.	31	2	59	0	.	0
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	73962894	73962894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_032217	exon27	c.C5117A	p.T1706K	GCTACTGTTAACT	.	88	4	60	0	.	.
GIN1	54826	hgsc.bcm.edu	37	5	102440388	102440388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	GIN1,mouth,carcinoma,0,1	GIN1	NM_017676	exon4	c.G496T	p.D166Y	ACAAATCTGTCAT	.	32	2	25	0	.	0
CASD1	64921	hgsc.bcm.edu	37	7	94173762	94173762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_022900	exon11	c.G1396T	p.A466S	GTTGCTGCATATT	.	95	4	27	0	.	.
MYNN	55892	hgsc.bcm.edu	37	3	169504301	169504301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	MYNN,upper_leg,malignant_melanoma,0,1	MYNN	NM_001185118	exon9	c.G1668T	p.K556N	TGTGAAGCCTTCT	.	52	2	35	0	.	0
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	123279605	123279605	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_022970	exon7	c.T827G	p.F276C	CAGACAAACTCTA	.	44	37	46	0	.	.
GBF1	8729	hgsc.bcm.edu	37	10	104123466	104123466	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_004193	exon17	c.2015-1G>T	.	CTCCTAGCTGACA	.	82	4	71	0	.	.
FRG1B	284802	hgsc.bcm.edu	37	20	29632806	29632806	+	RNA	SNP	T	T	C	rs6087300		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	TTACTGTAGTTTT	.	220	11	73	0	.	.
HOXD9	3235	hgsc.bcm.edu	37	2	176988290	176988290	+	Missense_Mutation	SNP	C	C	A	rs200417886		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.,4	.	NM_014213	exon1	c.C794A	p.P265Q	CGCAGCCGCAGCA	.	22	2	12	0	.	49
OR6B3	150681	hgsc.bcm.edu;broad.mit.edu	37	2	240984497	240984497	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_173351	exon1	c.C993A	p.L331L	TCCTCAGAGAGGC	.	100	4	88	0	.	.
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	149818340	149818340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000252	exon10	c.G1019T	p.S340I	TGTCCAGTTTGGA	.	190	17	71	0	.	.
DLGAP2	9228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	1616583	1616583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_004745	exon6	c.C1659A	p.S553R	GCAGAGCAGCACC	.	103	52	70	0	.	.
OR4D2	124538	hgsc.bcm.edu	37	17	56247705	56247705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	OR4D2,colon,carcinoma,0,1	OR4D2	NM_001004707	exon1	c.G689T	p.G230V	ATCCAGGGGAGGC	.	44	2	31	0	.	0
TTLL6	284076	hgsc.bcm.edu	37	17	46868791	46868791	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	TTLL6_ENST00000393382,right_upper_lobe,carcinoma,0,2	TTLL6_ENST00000393382	NM_001130918	exon9	c.C1173A	p.I391I	GCCCAGGATCTCA	.	39	3	27	1	.	0
CDH6	1004	hgsc.bcm.edu	37	5	31317975	31317975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CDH6,NS,carcinoma,0,1	CDH6	NM_004932	exon11	c.C1826T	p.T609M	ACCCCACGGGACT	.	40	2	30	0	.	0
C16orf78	123970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	49412407	49412407	+	Silent	SNP	C	C	T	rs143423404		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_144602	exon3	c.C297T	p.D99D	GAAGGACGCCGCC	.	46	7	65	0	0.000	.
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158549641	158549641	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001004477	exon1	c.A49T	p.T17S	TCATCGTTTGAAT	.	88	8	31	0	.	.
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1776236	1776236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001909	exon6	c.G727A	p.G243S	GCTCACCCCCAGG	.	66	35	38	0	.	.
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	29599613	29599613	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001033602	exon1	c.C808G	p.Q270E	GAGACCCAAACAG	.	15	5	15	0	.	.
ZKSCAN5	23660	hgsc.bcm.edu;bcgsc.ca	37	7	99123689	99123689	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_145102	exon6	c.C1026T	p.G342G	ACATGGCGAGAGA	.	69	5	47	0	.	.
GRM8	2918	hgsc.bcm.edu	37	7	126086280	126086280	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	GRM8,right_upper_lobe,carcinoma,0,1	GRM8	NM_000845	exon9	c.G2577T	p.V859V	TGTCACCACAGCC	.	49	2	59	0	.	0
KRTAP4-1	85285	hgsc.bcm.edu	37	17	39340729	39340729	+	Silent	SNP	G	G	A	rs373304706		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_033060	exon2	c.C321T	p.C107C	CTGACAGCAGAGT	.	130	7	68	0	.	.
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	21135210	21135210	+	Missense_Mutation	SNP	G	G	T	rs368227389	alternate_allele	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_006157	exon13	c.G1376T	p.R459L	TATATCGCTGTGA	.	81	16	78	0	.	.
RAD54B	25788	hgsc.bcm.edu	37	8	95479633	95479633	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001205262	exon2	c.G135A	p.E45E	CCTTACCTCAAAT	.	97	4	55	0	.	.
BCL6B	255877	hgsc.bcm.edu	37	17	6928019	6928019	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.,22	.	NM_181844	exon4	c.C701G	p.S234C	AGGCCTCCAGCAG	.	64	2	34	1	.	85
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74327840	74327840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_144993	exon9	c.A3520T	p.S1174C	GGGCACAGTGGCA	.	33	8	24	0	.	.
MMP20	9313	hgsc.bcm.edu	37	11	102465448	102465448	+	Missense_Mutation	SNP	G	G	A	rs148721639		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	MMP20,mouth,carcinoma,0,1	MMP20	NM_004771	exon7	c.C994T	p.R332W	TGGGCCGAATTCC	.	40	2	26	0	0.000	0
SLC5A1	6523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	32482270	32482270	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000343	exon10	c.C1085G	p.T362S	GCTGTACCAACAT	.	98	34	67	0	.	.
PPAN-P2RY11	692312	hgsc.bcm.edu;bcgsc.ca	37	19	10224342	10224342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001040664	exon13	c.C1313T	p.A438V	TGGCAGCTGCCGA	.	72	4	48	0	.	.
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115218557	115218557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000036	exon11	c.G1555A	p.V519M	CAAACACTGGCAT	.	124	39	83	0	.	.
FLT3	2322	hgsc.bcm.edu	37	13	28631553	28631553	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_004119	exon4	c.G415T	p.G139X	ATTCTCCAGCTTG	.	59	4	45	0	.	.
NIPA1	123606	hgsc.bcm.edu	37	15	23049093	23049093	+	Silent	SNP	G	G	T	rs143840469	alternate_allele	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NIPA1,NS,carcinoma,0,1	NIPA1	NM_144599	exon5	c.C726A	p.I242I	CTGGACGATGATG	.	19	2	12	0	.	0
CHFR	55743	hgsc.bcm.edu	37	12	133428224	133428224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	CHFR,NS,carcinoma,+1,1	CHFR	NM_001161344	exon12	c.C1508A	p.P503Q	ACACGCGGGTCCT	.	43	2	31	0	.	+1
OSBP	5007	hgsc.bcm.edu	37	11	59376002	59376002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	OSBP,caecum,carcinoma,0,1	OSBP	NM_002556	exon3	c.C777A	p.N259K	TCGTTCGTTGACC	.	43	2	15	0	.	0
ZNF14	7561	hgsc.bcm.edu;bcgsc.ca	37	19	19824917	19824917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_021030	exon3	c.C174A	p.N58K	CCCCTGGTTTCTG	.	80	4	51	0	.	.
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	54	25	40	0	.	0
WNK1	65125	hgsc.bcm.edu	37	12	989117	989117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	WNK1,bladder,carcinoma,0,1	WNK1	NM_018979	exon11	c.G2752A	p.A918T	CAACCAGCAGTTC	.	44	2	36	0	.	0
IGJ	3512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71522073	71522073	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_144646	exon4	c.A453C	p.L151F	TGGGGTTAAGGCT	.	71	18	49	0	.	.
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123274248	123274248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_015312	exon79	c.T14039C	p.L4680P	GGGCCCTTTTTCA	.	73	4	33	0	.	.
ND2	0	hgsc.bcm.edu	37	MT	5248	5248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	ENST00000361453	exon1	c.T779C	p.F260S	CCGGCTTTTTGCC	.	65	32	27	0	.	.
PLCE1-AS1	0	hgsc.bcm.edu	37	10	96043701	96043701	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CACTTTGACCATG	.	80	4	52	0	.	.
R3HDM2	22864	hgsc.bcm.edu	37	12	57663156	57663156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_014925	exon14	c.C1622T	p.A541V	CTATAGGCCACCG	.	95	4	68	0	.	.
IMP4	92856	hgsc.bcm.edu	37	2	131103674	131103674	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	IMP4,colon,carcinoma,+2,2	IMP4	NM_033416	exon7	c.C678A	p.Y226X	CGACTACATATCA	.	42	2	31	0	.	+2
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	88323786	88323786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000842	exon7	c.C1673G	p.P558R	TCAGTGGGCCAAG	.	63	23	48	0	.	.
URI1	8725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	30476190	30476190	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_003796	exon3	c.A213G	p.K71K	TGATAAATTGTCT	.	126	61	74	0	.	.
FRG1B	284802	hgsc.bcm.edu	37	20	29627943	29627943	+	RNA	SNP	G	G	A	rs199660536	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	TTCCAAGCAGAAC	.	21	5	7	0	.	.
NSD1	64324	hgsc.bcm.edu	37	5	176709524	176709524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NSD1_ENST00000439151,bladder,carcinoma,0,3	NSD1_ENST00000439151	NM_022455	exon19	c.G5951T	p.R1984L	GAGCTCGAATTCG	.	49	2	35	0	.	0
TIMP3	7078	hgsc.bcm.edu;bcgsc.ca	37	22	33254019	33254019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_000362	exon4	c.G332T	p.G111V	ATGATGGCAAGAT	.	88	4	63	0	.	.
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	22381017	22381017	+	Missense_Mutation	SNP	G	G	A	rs201082803		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_020346	exon4	c.G517A	p.A173T	TCAGCAGCCAGAG	.	76	27	57	0	0.001	.
SHANK2	22941	hgsc.bcm.edu	37	11	70332552	70332552	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_133266	exon10	c.C2082T	p.Y694Y	GGTCTCGTACTTG	.	50	3	34	0	.	.
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	31803205	31803205	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NOL4,NS,carcinoma,0,1	NOL4	NM_003787	exon1	c.C13G	p.R5G	TGTCGCGCTCGCT	.	24	7	20	0	.	0
PLEKHG5	57449	hgsc.bcm.edu	37	1	6529206	6529206	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	PLEKHG5_ENST00000377748,colon,carcinoma,0,1	PLEKHG5_ENST00000377748	NM_001265592	exon20	c.G2382A	p.E794E	CTCCTCCTCTTCC	.	12	2	18	0	.	0
ANK3	288	hgsc.bcm.edu	37	10	61959898	61959898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	ANK3,colon,carcinoma,0,1	ANK3	NM_020987	exon13	c.G1480A	p.A494T	CTTTAGCTTCTAC	.	48	2	25	0	.	0
UNC13A	23025	hgsc.bcm.edu	37	19	17756910	17756910	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001080421	exon17	c.C2055A	p.A685A	GCCCTGGGCGCAG	.	40	4	40	0	.	.
ZNF345	25850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37367799	37367799	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_001242476	exon4	c.C67G	p.Q23E	AAAAACCAGTTTG	.	93	5	44	0	.	.
PEG3-AS1	100169890	hgsc.bcm.edu	37	19	57324204	57324204	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	AAACCCAGAACAC	.	134	9	63	0	.	.
LRRK2	120892	hgsc.bcm.edu	37	12	40668732	40668732	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_198578	exon16	c.G1878T	p.L626L	ACATCTGCTGGCA	.	97	4	33	0	.	.
KRT74	121391	hgsc.bcm.edu	37	12	52961454	52961454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	NM_175053	exon8	c.C1379A	p.S460Y	CTCACAGAGGATG	.	64	4	40	0	.	.
ABCC2	1244	hgsc.bcm.edu	37	10	101567200	101567200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	ABCC2,NS,carcinoma,0,1	ABCC2	NM_000392	exon12	c.G1590T	p.K530N	CCGGAAGAAAGAG	.	51	3	48	0	.	0
BCL9	607	broad.mit.edu	37	1	147084715	147084715	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	BCL9_ENST00000234739,right_upper_lobe,carcinoma,0,1	BCL9	NM_004326	exon5	c.T87C	p.R29R	GGTCCGTCCCCCT	.	116	5	64	0	.	150
HERC4	26091	broad.mit.edu	37	10	69750950	69750950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	HERC4	NM_022079	exon12	c.A1278G	p.I426M	TCCATCTATCTCA	.	441	4	121	0	.	78
DDX55	57696	broad.mit.edu	37	12	124103201	124103202	+	Translation_Start_Site	DEL	TG	TG	-	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	DDX55	.	.	.	.	GTGGTATGTGTGT	.	119	7	112	0	.	51
NCOR2	9612	broad.mit.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	32	3	27	0	.	475
ADAM21P1	0	broad.mit.edu	37	14	70713782	70713782	+	RNA	SNP	A	A	G	rs200469187		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CCAGCAAATTTTG	.	45	5	57	1	A|0.994;G|0.006	.
.	0	broad.mit.edu	37	14	106622150	106622150	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CCAGGCTGTACCA	.	72	4	77	1	.	.
.	0	broad.mit.edu	37	14	106622157	106622157	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	GTACCAAGCCTCC	.	81	4	76	1	.	.
.	0	broad.mit.edu	37	15	102292809	102292809	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	Q3ZCN4_HUMAN,NS,malignant_melanoma,0,1	.	.	.	.	.	TGCACTCGCGTGG	.	107	6	60	2	.	.
.	0	broad.mit.edu	37	15	102293062	102293064	+	RNA	DEL	CTC	CTC	-	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CATCTTCTCAGAG	.	91	9	37	0	.	.
LINC00854	0	broad.mit.edu	37	17	41375508	41375509	+	RNA	DEL	CT	CT	-	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CTCACACTCTCTC	.	6	2	7	0	.	.
POTEC	388468	broad.mit.edu	37	18	14542812	14542812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	POTEC,NS,carcinoma,+2,1	POTEC	NM_001137671	exon1	c.A334G	p.S112G	TGCCGCTCCCCCT	.	275	5	151	1	.	129
ZNF521	25925	broad.mit.edu	37	18	22805339	22805339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ZNF521	NM_015461	exon4	c.C2543T	p.S848F	TGCTCGGAAGCTC	.	51	4	19	0	.	269
ALDH16A1	126133	broad.mit.edu	37	19	49973687	49973687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ALDH16A1	NM_153329	exon17	c.C2372T	p.A791V	GAGTGGCGCGGAC	.	36	3	33	0	.	54
CEACAM20	125931	broad.mit.edu	37	19	45017504	45017504	+	RNA	DEL	T	T	-	rs10669399	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	CEACAM20	.	.	.	.	TTTTGCTTTTTTT	.	7	2	5	0	.	31
.	400986	broad.mit.edu	37	2	96525667	96525670	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	rs374428964		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	ATTTTATTTCTTC	.	887	7	293	0	.	.
TTN	7273	broad.mit.edu	37	2	179453444	179453444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	TTN	NM_001267550	exon304	c.A63008G	p.K21003R	TTTTCCTTTTTCT	.	66	3	45	0	.	18412
PSMG1	8624	broad.mit.edu	37	21	40555233	40555235	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	PSMG1	NM_203433	exon1	c.77_79del	p.26_27del	TCCGCCCCTCCTC	.	6	1	8	0	.	11
.	0	broad.mit.edu	37	3	22424366	22424366	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	TTTGTTGACATTC	.	41	6	27	0	.	.
.	0	broad.mit.edu;ucsc.edu	37	3	160285775	160285775	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	TTCACTGTGCAGC	.	34	15	19	0	.	.
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195505960	195505960	+	Missense_Mutation	SNP	G	G	C	rs376166		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	MUC4_ENST00000463781,NS,carcinoma,0,3	MUC4	NM_018406	exon2	c.C12491G	p.T4164S	GCGTCGGTGACAG	.	87	16	51	1	.	1505
SMARCA5	8467	broad.mit.edu	37	4	144474311	144474311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	SMARCA5	NM_003601	exon24	c.G3133T	p.G1045X	GGTCGAGGAAGAA	.	118	4	61	0	.	73
SGCD	6444	broad.mit.edu	37	5	155935643	155935643	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	SGCD	NM_000337	exon4	c.A225G	p.K75K	AGAAAAAGGTCTA	.	150	4	83	0	.	52
ZNF354B	117608	broad.mit.edu	37	5	178293259	178293259	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ZNF354B	NM_058230	exon3	c.C48T	p.F16F	GACATTCGAGGAC	.	100	5	82	1	.	67
CYP21A2	0	broad.mit.edu	37	6	31973481	31973483	+	RNA	DEL	CTG	CTG	-	rs372987663		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	CYP21A2	.	.	.	.	CTGGGCCTGCTGC	.	149	8	66	0	.	42
NCAPG2	54892	broad.mit.edu	37	7	158478886	158478886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	NCAPG2	NM_017760	exon8	c.A815G	p.K272R	GAAGCCTTTTTCC	.	345	6	114	1	.	80
FAM95B1	0	broad.mit.edu	37	9	43029805	43029805	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CAGAACCACAGCC	.	85	4	58	1	.	.
TUBBP5	0	broad.mit.edu	37	9	141069495	141069495	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	TGGCCACGAGGGA	.	116	9	50	1	.	.
.	0	broad.mit.edu	37	X	25224555	25224555	+	RNA	DEL	C	C	-	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	AATTTACTTTTTG	.	206	11	137	0	.	.
.	0	broad.mit.edu	37	X	139099848	139099848	+	RNA	SNP	T	T	A	rs376042212		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	AAAGGATTTCAAG	.	184	6	118	0	.	.
WDR13	64743	broad.mit.edu	37	X	48457849	48457849	+	Splice_Site	SNP	A	A	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	WDR13	NM_017883	exon3	c.A391G	p.R131G	GAGGACAGGTATG	.	114	3	60	0	.	96
.	0	ucsc.edu;bcgsc.ca	37	10	30992597	30992597	+	Splice_Site	SNP	T	T	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	ACAAGGTATTCCA	.	78	27	53	0	.	.
RAG1	5896	ucsc.edu	37	11	36597457	36597457	+	Missense_Mutation	SNP	C	C	T	rs193922462		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	RAG1	NM_000448	exon2	c.C2603T	p.A868V	TGGATGCAGTTTG	.	34	4	24	0	.	151
ANXA2	302	ucsc.edu;bcgsc.ca	37	15	60644601	60644601	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ANXA2	NM_001002858	exon9	c.C717T	p.S239S	GGGCACGCTCCGC	.	26	4	24	0	.	28
TTC39A	22996	bcgsc.ca	37	1	51777814	51777814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	C1orf34,NS,carcinoma,0,1	TTC39A	NM_001144832	exon4	c.C344A	p.P115H	AGCGTGGGGCGGT	.	59	4	39	0	.	40
FAM91A2	0	bcgsc.ca	37	1	149648156	149648156	+	RNA	SNP	T	C	C	rs72633629		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	ACACAATACTGTT	.	227	32	109	8	T|0.250;C|0.750	.
.	0	bcgsc.ca	37	2	87607401	87607401	+	RNA	SNP	G	A	A	rs77669282		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	TACAGGGGCTGGA	.	56	12	40	1	G|0.500;A|0.500	.
IWS1	55677	bcgsc.ca	37	2	128284021	128284021	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	IWS1	.	.	.	.	CGAGCCGGCGTTC	.	24	12	23	0	.	61
LRCH3	84859	bcgsc.ca	37	3	197547212	197547212	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	LRCH3	NM_032773	exon4	c.A551G	p.E184G	GCAATGAAATTCA	.	156	60	74	2	.	96
NAF1	92345	bcgsc.ca	37	4	164050124	164050124	+	Silent	SNP	T	G	G	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	NAF1	NM_138386	exon8	c.A1410C	p.P470P	AGGGGGTGGGGGT	.	52	21	36	1	.	69
FRG1	2483	bcgsc.ca	37	4	190876263	190876263	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	FRG1,NS,carcinoma,0,2	FRG1	NM_004477	exon5	c.A389T	p.D130V	GTTCAGATGCAAT	.	402	31	253	4	.	76
.	653441	bcgsc.ca	37	12	55805960	55805960	+	RNA	SNP	C	T	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	CGCCTGCGAACGC	.	118	66	62	0	.	.
CAB39L	81617	bcgsc.ca	37	13	49951237	49951237	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	CAB39L	NM_030925	exon3	c.G142A	p.A48T	TCATTGCTTGCAG	.	24	3	54	0	.	35
ARHGAP5	394	bcgsc.ca	37	14	32561340	32561340	+	Missense_Mutation	SNP	G	A	A	rs78337553	bycluster	TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	ARHGAP5,NS,carcinoma,0,1	ARHGAP5	NM_001173	exon2	c.G1465A	p.E489K	AAAGAAGAGTTTC	.	174	13	98	2	G|0.999;A|0.001	166
NEO1	4756	bcgsc.ca	37	15	73541487	73541487	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	NEO1	NM_001172623	exon10	c.G1693T	p.G565C	GTGTCTGGCAATG	.	73	5	60	0	.	102
.	441775	bcgsc.ca	37	16	76268971	76268971	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	GCCTCAGCTGGCC	.	29	5	26	0	.	.
MED1	5469	bcgsc.ca	37	17	37565938	37565938	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	MED1	NM_004774	exon17	c.G2536A	p.A846T	TTCCAGCAGCATC	.	46	4	36	0	.	123
FRG1B	284802	bcgsc.ca	37	20	29625971	29625971	+	Missense_Mutation	SNP	C	A	A	rs145033899		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	FRG1B,NS,carcinoma,0,6	FRG1B	.	.	.	.	GGGAACCAGTCTT	.	581	25	249	4	.	181
FRG1B	284802	bcgsc.ca	37	20	29628278	29628278	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	FRG1B,NS,carcinoma,0,2	FRG1B	.	.	.	.	AATGAAGCAGGGG	.	658	35	264	6	.	181
.	0	bcgsc.ca	37	22	16404908	16404908	+	RNA	SNP	T	A	A	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	TGTATTTTGGGAC	.	283	19	204	0	.	.
.	0	bcgsc.ca	37	22	20710402	20710402	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	ACGAGGACGCCGC	.	117	13	103	4	.	.
.	100289259	bcgsc.ca	37	X	136743277	136743277	+	RNA	SNP	A	C	C	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	.	.	.	.	.	TGTGACATCTACC	.	95	47	52	0	.	.
ZNF676	163223	bcgsc.ca	37	19	22363736	22363737	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-W5-AA34-01A-11D-A417-09	TCGA-W5-AA34-10A-01D-A41A-09	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	302c8a32-f894-4f40-950b-07ce2146bd13	8a5426fa-9c13-470a-b1cf-31d9043405df	.	ZNF676	NM_001001411	exon3	c.G782C	p.G261A	CTAAATCCTTTGC	.	76	5	60	2	.	146
