Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	25599825	25599825	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_000462	exon11	c.2140delG	p.V714fs	ATTGACAAATTCC	.	70	17	115	0	.	.
UBA5	79876	hgsc.bcm.edu	37	3	132395425	132395426	+	RNA	INS	-	-	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TGAAATTAAAAAA	.	24	11	15	0	.	.
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38460547	38460547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001001894	exon4	c.A239G	p.D80G	TGCAAGATTATTG	.	32	10	27	0	.	.
PPCS	79717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42925444	42925444	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_024664	exon3	c.G783C	p.E261D	CCTTGAGTCACGA	.	92	16	90	0	.	.
TPTE2P5	100616668	hgsc.bcm.edu	37	13	41438382	41438382	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	ATAGCTAGAAAAA	.	46	6	53	0	.	.
DLG2	1740	hgsc.bcm.edu	37	11	84865696	84865696	+	Splice_Site	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	DLG2_ENST00000376104,NS,carcinoma,0,1	DLG2_ENST00000376104	NM_001142699	exon6	c.187-1G>T	.	TGTAAGCTAAAAT	.	19	2	20	0	.	0
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64968453	64968453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_015042	exon4	c.C3400A	p.Q1134K	TACCGACAGGTAA	.	35	12	45	0	.	.
SAA3P	6290	hgsc.bcm.edu	37	11	18134705	18134705	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	SAA3P,NS,carcinoma,0,1	SAA3P	.	.	.	.	TCACTTCTGTAGC	.	39	2	54	0	.	0
NOL9	79707	hgsc.bcm.edu	37	1	6609749	6609749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	NOL9,NS,carcinoma,0,2	NOL9	NM_024654	exon3	c.G626A	p.R209H	GACCAACGCCTGT	.	30	2	38	0	.	0
TDG	6996	hgsc.bcm.edu	37	12	104374675	104374675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_003211	exon4	c.G413A	p.G138D	AGATTGGCATAAA	.	79	4	98	0	.	.
MTM1	4534	hgsc.bcm.edu	37	X	149814336	149814336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_000252	exon9	c.G859A	p.A287T	GCAGTGGCCAACA	.	45	3	49	0	.	.
MIR548F1	100302192	hgsc.bcm.edu	37	1	186357525	186357525	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	CTCATCTTTTTTT	.	47	4	45	0	.	.
COL8A2	1296	hgsc.bcm.edu;bcgsc.ca	37	1	36565684	36565684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_005202	exon1	c.C160A	p.P54T	AGGGCGGTCCCAC	.	49	4	54	0	.	.
SERPINB13	5275	hgsc.bcm.edu	37	18	61260205	61260205	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	SERPINB13,NS,carcinoma,0,1	SERPINB13	NM_012397	exon5	c.G472T	p.E158X	ACAAATGGTAGAG	.	40	2	49	0	.	0
YOD1	55432	hgsc.bcm.edu;bcgsc.ca	37	1	207223000	207223000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_018566	exon2	c.G412T	p.A138S	TAGAAGCACCACG	.	94	5	81	0	.	.
PSG5	5673	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	43674291	43674291	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_002781	exon6	c.965-1G>A	.	AAGGAGCTGTCAT	.	62	5	60	0	.	.
CFI	3426	hgsc.bcm.edu	37	4	110663684	110663684	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CFI,colon,NS,0,1	CFI	NM_000204	exon12	c.C1497T	p.Y499Y	ATTTCCGTAAAAC	.	34	2	63	0	.	0
VPS52	6293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33236870	33236870	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_022553	exon6	c.C469T	p.R157X	GAAGTCGAATGTT	.	39	13	39	0	.	.
HS3ST4	9951	hgsc.bcm.edu	37	16	26147094	26147094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	HS3ST4_ENST00000331351,NS,carcinoma,0,4	HS3ST4_ENST00000331351	NM_006040	exon2	c.C896T	p.T299M	ACTACACGCAGAC	.	28	2	26	0	.	0
MIR548N	100302152	hgsc.bcm.edu	37	2	179372484	179372484	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TTAAGGCTTTACA	.	53	16	68	0	.	.
PTH2	113091	hgsc.bcm.edu;broad.mit.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C	rs200733272	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PTH2,NS,carcinoma,0,9	PTH2	NM_178449	exon1	c.C64G	p.L22V	CCACCAGCAGCAG	.	66	5	71	1	.	0
PSMF1	9491	hgsc.bcm.edu	37	20	1108090	1108090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PSMF1,caecum,carcinoma,0,1	PSMF1	NM_006814	exon3	c.G304A	p.A102T	CAAGTGGCAGACT	.	46	2	46	0	.	0
TTBK1	84630	hgsc.bcm.edu	37	6	43222295	43222295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TTBK1,NS,carcinoma,0,1	TTBK1	NM_032538	exon6	c.C482T	p.A161V	ACTTTGCCATGGG	.	24	2	49	0	.	0
ZNF99	7652	hgsc.bcm.edu	37	19	22940945	22940945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ZNF99,right_upper_lobe,carcinoma,0,2	ZNF99	NM_001080409	exon4	c.G1766T	p.G589V	TTCTCCCCAGTAT	.	54	3	55	0	.	0
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CSGALNACT2,NS,carcinoma,0,5	CSGALNACT2	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	78	4	57	0	.	0
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22940952	22940952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001080409	exon4	c.C1759A	p.H587N	CAGTATGAATTGC	.	53	5	52	0	.	.
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38724339	38724339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_175060	exon1	c.G889A	p.G297R	TCCCCCCAAGGGT	.	12	6	27	0	.	.
FASTKD3	79072	hgsc.bcm.edu	37	5	7867809	7867809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FASTKD3,bladder,carcinoma,0,1	FASTKD3	NM_024091	exon2	c.G388A	p.A130T	CTGCTGCCATAGT	.	16	2	37	0	.	0
FAM71B	153745	hgsc.bcm.edu	37	5	156590510	156590510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FAM71B,colon,carcinoma,0,1	FAM71B	NM_130899	exon2	c.G766T	p.G256W	CAGCCCCTGGAGT	.	29	2	24	0	.	0
PSTPIP2	9050	hgsc.bcm.edu	37	18	43578790	43578790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PSTPIP2,NS,carcinoma,0,1	PSTPIP2	NM_024430	exon8	c.G532A	p.A178T	AAGTTGCCAGTTT	.	55	3	67	0	.	0
MGAM	8972	hgsc.bcm.edu	37	7	141719015	141719015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MGAM_ENST00000549489,colon,carcinoma,0,3	MGAM_ENST00000549489	NM_004668	exon4	c.G344T	p.R115L	ACCAACGTGGCTG	.	41	2	38	0	.	0
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	186312595	186312595	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_003292	exon27	c.C3613T	p.R1205X	TTTCTCGTCGTAT	.	81	35	105	0	.	.
CLSTN2	64084	hgsc.bcm.edu	37	3	140178551	140178551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CLSTN2,NS,carcinoma,0,1	CLSTN2	NM_022131	exon7	c.G1162T	p.G388C	AAACACGGCCCCA	.	38	2	48	0	.	0
COLGALT2	23127	hgsc.bcm.edu	37	1	183908097	183908097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	GLT25D2,colon,carcinoma,0,2	GLT25D2	NM_015101	exon12	c.C1679T	p.T560M	TAGTGCGTAGGGT	.	26	2	35	0	.	0
ALS2CR12	130540	hgsc.bcm.edu	37	2	202216087	202216087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ALS2CR12,NS,carcinoma,0,1	ALS2CR12	NM_001127391	exon2	c.C41A	p.P14H	TTCCAGGGGTCCC	.	46	3	32	0	.	0
MIR3162	100422880	hgsc.bcm.edu;ucsc.edu	37	11	59362619	59362619	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TACTCCCTAAAAA	.	99	13	78	0	.	.
OGDH	4967	hgsc.bcm.edu	37	7	44737336	44737336	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OGDH,colon,carcinoma,0,1	OGDH	NM_002541	exon17	c.G2313A	p.R771R	GGTGCGGCAGAAT	.	18	2	23	0	.	0
DCP1B	196513	hgsc.bcm.edu	37	12	2062357	2062357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	DCP1B,NS,haematopoietic_neoplasm,0,1	DCP1B	NM_152640	exon7	c.T749A	p.L250H	TGGTGGAGAGTCT	.	44	4	38	2	.	0
GPHN	10243	hgsc.bcm.edu	37	14	67635650	67635650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	GPHN_ENST00000478722,colon,carcinoma,0,1	GPHN_ENST00000478722	NM_020806	exon21	c.G1976T	p.G659V	TTTCAGGGAATCC	.	30	3	28	0	.	0
GALNTL6	442117	hgsc.bcm.edu	37	4	173804049	173804049	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	GALNTL6,NS,carcinoma,0,1	GALNTL6	NM_001034845	exon8	c.C1032T	p.I344I	TGAAATCTCTTTT	.	38	2	66	0	.	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52661362	52661362	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_018313	exon14	c.A1468T	p.R490X	CGTCTCTCCTGGC	.	47	23	51	0	.	.
TRPT1	83707	hgsc.bcm.edu	37	11	63991664	63991664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TRPT1,NS,carcinoma,0,1	TRPT1	NM_001160389	exon7	c.G584A	p.R195H	GCAGAGCGGAAGA	.	16	2	6	0	.	0
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	134071413	134071413	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_032961	exon1	c.G118C	p.D40H	GCTGAAGATCTGG	.	32	6	79	0	.	.
FIBIN	387758	hgsc.bcm.edu	37	11	27016617	27016617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FIBIN,NS,carcinoma,0,1	FIBIN	NM_203371	exon1	c.G544T	p.G182W	TCTGTGGGGCTCA	.	26	3	29	0	.	0
ZNF493	284443	hgsc.bcm.edu	37	19	21606712	21606712	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ZNF493_ENST00000392288,bladder,carcinoma,0,4	ZNF493_ENST00000392288	NM_001076678	exon4	c.T1251C	p.S417S	GGAGTCTTCACAC	.	33	2	47	1	.	0
RBM20	282996	hgsc.bcm.edu;bcgsc.ca	37	10	112579834	112579834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001134363	exon10	c.G2555T	p.G852V	AGGCTGGAAAAGA	.	52	4	48	0	.	.
TMEM150A	129303	hgsc.bcm.edu	37	2	85826690	85826690	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TMEM150A,NS,carcinoma,0,1	TMEM150A	NM_001031738	exon7	c.C532A	p.R178R	CACTTCGCAGATA	.	35	2	30	0	.	0
ZNF738	148203	hgsc.bcm.edu;ucsc.edu	37	19	21565705	21565705	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	GCCACAGCCGGGC	.	55	21	99	0	.	.
UGT1A9	54600	hgsc.bcm.edu	37	2	234581157	234581157	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	UGT1A9,NS,carcinoma,0,2	UGT1A9	NM_021027	exon1	c.A577C	p.I193L	CCCAGAATTCTCT	.	67	3	74	1	.	0
NPM3	10360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103542240	103542240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_006993	exon3	c.C319T	p.P107S	CCATGGGTTGGCA	.	12	7	22	0	.	.
WBSCR22	114049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73098119	73098119	+	Missense_Mutation	SNP	G	G	C	rs148529785	bycluster;alternate_allele	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001202560	exon2	c.G71C	p.R24P	AAGCCCGGAAATA	.	85	24	86	0	.	.
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu	37	1	120438863	120438863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ADAM30,NS,carcinoma,0,1	ADAM30	NM_021794	exon1	c.C97A	p.H33N	CAGGGTGAAAAAT	.	21	4	35	0	.	0
EHD3	30845	hgsc.bcm.edu	37	2	31457587	31457587	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	EHD3,NS,carcinoma,0,1	EHD3	NM_014600	exon1	c.C100T	p.L34L	AAGCTGCTGCCCT	.	75	3	76	0	.	0
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	104897649	104897649	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001100117	exon4	c.T822G	p.A274A	TTATGCTGATAGG	.	30	8	40	0	.	.
OR5AN1	390195	hgsc.bcm.edu	37	11	59132147	59132147	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OR5AN1,NS,carcinoma,0,1	OR5AN1	NM_001004729	exon1	c.C216G	p.V72V	AGATGTCTGCTAT	.	35	2	34	0	.	0
ND4L	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	10725	10725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	ENST00000361335	exon1	c.G256A	p.G86S	ACATATGGCCTAG	.	13	11	14	0	.	.
TRIM33	51592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	114952824	114952824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_033020	exon12	c.C2176A	p.L726I	GAGAAAGGGCAGA	.	49	4	66	0	.	.
GSDMA	284110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38128427	38128427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_178171	exon6	c.G701A	p.G234E	CTCCTGGAGGTAA	.	40	8	43	0	.	.
XPOT	11260	hgsc.bcm.edu	37	12	64824051	64824051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	XPOT,NS,carcinoma,0,1	XPOT	NM_007235	exon17	c.G1960T	p.A654S	AACCATGCTGTTG	.	47	2	59	0	.	0
FYTTD1	84248	hgsc.bcm.edu	37	3	197500335	197500335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FYTTD1,NS,carcinoma,0,1	FYTTD1	NM_032288	exon5	c.C559T	p.R187C	GATACTCGTCAGG	.	76	4	97	1	.	0
ANO6	196527	hgsc.bcm.edu	37	12	45803228	45803228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001204803	exon17	c.C2032T	p.P678S	CTGCAGCCTATGG	.	80	4	108	0	.	.
TUBA3C	7278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	19751499	19751499	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_006001	exon4	c.C624A	p.A208A	ATAGATGGCTTCA	.	45	8	58	0	.	.
PRDM4	11108	hgsc.bcm.edu	37	12	108145794	108145794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PRDM4,NS,carcinoma,0,1	PRDM4	NM_012406	exon5	c.C524A	p.A175D	CTTTGGGCACCAT	.	50	2	56	0	.	0
CCDC138	165055	hgsc.bcm.edu	37	2	109405307	109405307	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CCDC138,NS,carcinoma,0,1	CCDC138	NM_144978	exon3	c.152-1G>T	.	TTGACAGGTGATT	.	27	2	50	0	.	0
IQGAP1	8826	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	90972899	90972899	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_003870	exon4	c.390+1G>T	.	CCTAAGGTAACTT	.	41	4	34	0	.	.
WIPF2	147179	hgsc.bcm.edu	37	17	38421061	38421061	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_133264	exon5	c.G633A	p.P211P	GCCACCGACGCCT	.	45	4	60	0	.	.
POMGNT1	55624	hgsc.bcm.edu	37	1	46662489	46662489	+	Missense_Mutation	SNP	G	G	T	rs144959783	alternate_allele	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	POMGNT1_ENST00000371992,caecum,carcinoma,0,2	POMGNT1_ENST00000371992	NM_017739	exon4	c.C268A	p.R90S	CTCTGCGCCGTGG	.	19	3	20	0	.	0
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	106959842	106959842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_014978	exon15	c.G2095A	p.E699K	ACCAAGGAGGACT	.	39	11	54	0	.	.
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64968457	64968457	+	Splice_Site	SNP	T	T	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_015042	exon4	c.3402+2T>G	.	GACAGGTAACTGT	.	36	12	44	0	.	.
TAP1	6890	hgsc.bcm.edu	37	6	32815404	32815404	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TAP1,rectum,carcinoma,0,1	TAP1	NM_000593	exon9	c.G1969T	p.E657X	TATTTTCTTGAAG	.	17	2	21	0	.	0
SLCO5A1	81796	hgsc.bcm.edu	37	8	70744391	70744391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	SLCO5A1,middle_lobe,carcinoma,0,1	SLCO5A1	NM_030958	exon2	c.G518A	p.C173Y	TCAAAGCAGCTGA	.	41	2	63	0	.	0
SEC63	11231	hgsc.bcm.edu	37	6	108214751	108214751	+	Missense_Mutation	SNP	T	T	C	rs79703886		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	SEC63,NS,carcinoma,0,2	SEC63	NM_007214	exon16	c.A1609G	p.T537A	CAGGTGTAGGTTT	.	47	3	83	0	.	0
MPHOSPH8	54737	hgsc.bcm.edu	37	13	20233249	20233249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MPHOSPH8,NS,carcinoma,0,1	MPHOSPH8	NM_017520	exon6	c.C1691T	p.A564V	CAGATGCAATTCC	.	47	2	92	0	.	0
NLRP3	114548	hgsc.bcm.edu	37	1	247588563	247588563	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	NLRP3,NS,carcinoma,0,1	NLRP3	NM_183395	exon3	c.G1818T	p.L606L	CAGGCTGGAGCTG	.	27	2	35	0	.	0
FSIP2	401024	hgsc.bcm.edu;bcgsc.ca	37	2	186666462	186666462	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_173651	exon17	c.A12696T	p.L4232F	ATTTTTAGAAGAT	.	31	12	53	0	.	.
GLG1	2734	hgsc.bcm.edu;bcgsc.ca	37	16	74526937	74526937	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001145667	exon7	c.G1152A	p.R384R	ATTGCACCGGTAT	.	51	4	63	0	.	.
OBSCN	84033	hgsc.bcm.edu	37	1	228480450	228480450	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OBSCN_ENST00000570156,colon,carcinoma,0,4	OBSCN_ENST00000570156	NM_001271223	exon45	c.C12117T	p.C4039C	CGTGTGCGGGCAG	.	43	2	36	0	.	0
ZNF480	147657	hgsc.bcm.edu	37	19	52825571	52825571	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ZNF480_ENST00000468240,NS,carcinoma,0,2	ZNF480_ENST00000468240	NM_144684	exon5	c.G1068T	p.A356A	GATTGCGCTCCTT	.	41	2	39	0	.	0
OR2T33	391195	hgsc.bcm.edu	37	1	248436878	248436878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OR2T33,bladder,carcinoma,0,1	OR2T33	NM_001004695	exon1	c.C239T	p.A80V	TCAGCCGCCATTT	.	90	4	86	0	.	0
LRRC4	64101	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	127669004	127669004	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_022143	exon2	c.C1690A	p.R564R	CAGTCCGGGCGGC	.	34	4	28	0	.	.
MYH1	4619	hgsc.bcm.edu	37	17	10398547	10398547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MYH1,NS,carcinoma,0,1	MYH1	NM_005963	exon36	c.C5257T	p.R1753C	CATTGCGGGCTTC	.	47	2	74	0	.	0
TLE2	7089	hgsc.bcm.edu	37	19	3011031	3011031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TLE2,colon,carcinoma,0,1	TLE2	NM_001144761	exon13	c.C1043T	p.T348M	CTGTCCGTGGAAG	.	42	2	59	0	.	0
PHLPP1	23239	hgsc.bcm.edu	37	18	60562374	60562374	+	Missense_Mutation	SNP	G	G	A	rs376292612		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PHLPP1_ENST00000262719,NS,carcinoma,0,6	PHLPP1_ENST00000262719	NM_194449	exon5	c.G2197A	p.V733I	GCAGCCGTTGGAG	.	40	2	58	0	.	0
FLG2	388698	hgsc.bcm.edu	37	1	152323970	152323970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FLG2,NS,carcinoma,0,1	FLG2	NM_001014342	exon3	c.G6292A	p.A2098T	TTCCAGCTGTCCT	.	57	3	68	0	.	0
APC	324	hgsc.bcm.edu	37	5	112155042	112155042	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	APC,colon,carcinoma,0,1	APC	NM_001127511	exon8	c.1258+1G>T	.	ATCCAAGTATGTT	.	34	2	33	0	.	0
DNM2	1785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	10941703	10941703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001005361	exon21	c.G2593A	p.E865K	CCAGCCGAGCCAT	.	27	8	28	0	.	.
VHL	7428	hgsc.bcm.edu	37	3	10191635	10191635	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	VHL,NS,carcinoma,-2,1	VHL	NM_000551	exon3	c.C628A	p.R210R	CATCAACGGATGG	.	23	2	26	0	.	-2
DCP1B	196513	hgsc.bcm.edu	37	12	2062353	2062353	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	DCP1B,rectum,carcinoma,0,1	DCP1B	NM_152640	exon7	c.C753G	p.H251Q	CTGCTGGTGGAGA	.	41	3	35	2	.	0
BPHL	670	hgsc.bcm.edu;bcgsc.ca	37	6	3127475	3127475	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_004332	exon3	c.212-1G>T	.	TTTTTAGGAAGTG	.	48	4	35	0	.	.
C3orf67	200844	hgsc.bcm.edu	37	3	58870322	58870322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	C3orf67,NS,carcinoma,0,1	C3orf67	NM_198463	exon7	c.C289A	p.R97S	TTTGGCGAAGTTT	.	44	2	64	0	.	0
DNASE1L2	1775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2287818	2287818	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001374	exon6	c.G642C	p.A214A	GCGGGCGCAGGAC	.	19	4	32	0	.	.
CLRN3	119467	hgsc.bcm.edu	37	10	129676685	129676685	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CLRN3,NS,carcinoma,0,2	CLRN3	NM_152311	exon4	c.410-1G>A	.	AGGATGCTGAAAG	.	46	3	39	0	.	0
CTNNA3	29119	hgsc.bcm.edu	37	10	69281681	69281681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_013266	exon5	c.C498A	p.N166K	AGATTTGTTGGCA	.	45	3	57	0	.	.
HUWE1	10075	hgsc.bcm.edu	37	X	53570921	53570921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_031407	exon73	c.G11260T	p.G3754C	CTAAACCGGAGGA	.	73	3	68	0	.	.
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118499246	118499246	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001144758	exon6	c.G1707T	p.V569V	GCGGGTGCCTGTC	.	50	13	73	0	.	.
ZNF135	7694	hgsc.bcm.edu	37	19	58578438	58578438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ZNF135_ENST00000401053,right_upper_lobe,carcinoma,0,2	ZNF135_ENST00000401053	NM_007134	exon4	c.A658G	p.R220G	GGAAAAAGGGAGA	.	54	3	79	0	.	0
MLL2	8085	hgsc.bcm.edu	37	12	49420526	49420526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MLL2_ENST00000301067,colon,carcinoma,0,2	MLL2_ENST00000301067	NM_003482	exon48	c.G15223A	p.G5075R	GTGCCCCGCCCTG	.	15	2	25	0	.	0
RBFA	79863	hgsc.bcm.edu	37	18	77805954	77805954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	RBFA,colon,carcinoma,0,1	RBFA	NM_024805	exon7	c.G831T	p.K277N	GAAAAAGGGAAGG	.	19	2	23	0	.	0
F7	2155	hgsc.bcm.edu	37	13	113770013	113770013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	F7,NS,carcinoma,0,1	F7	NM_000131	exon6	c.G470T	p.G157V	ACGGCGGCTGTGA	.	21	2	34	0	.	0
ENOSF1	55556	hgsc.bcm.edu	37	18	674365	674365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_202758	exon15	c.G1293T	p.K431N	GTGTTTCTTTACA	.	62	3	54	0	.	.
CCDC80	151887	hgsc.bcm.edu	37	3	112357186	112357186	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CCDC80,NS,carcinoma,0,1	CCDC80	NM_199511	exon2	c.G1567T	p.E523X	GCAGCTCGTCCTC	.	37	2	32	0	.	0
ZPBP2	124626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38028702	38028702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_199321	exon5	c.G586C	p.E196Q	ATTCCAGAACATG	.	43	6	34	0	.	.
WDR33	55339	hgsc.bcm.edu	37	2	128520647	128520647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	WDR33,NS,carcinoma,0,1	WDR33	NM_001006623	exon7	c.G713A	p.R238K	AGAATTCTTTCCT	.	45	2	56	0	.	0
ETS1	2113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128354828	128354828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	ETS1_ENST00000392668,NS,carcinoma,0,2	ETS1_ENST00000392668	NM_001143820	exon7	c.C752T	p.S251L	ATGACCGAGGGGT	.	25	9	36	0	.	0
SNX31	169166	hgsc.bcm.edu	37	8	101601166	101601166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	SNX31,NS,carcinoma,0,1	SNX31	NM_152628	exon11	c.C1020A	p.N340K	GTTCTGGTTGAGA	.	40	2	63	0	.	0
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55537426	55537426	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_006269	exon4	c.C984T	p.D328D	TCAAGACGGCACT	.	39	5	51	0	.	.
FAM98B	283742	hgsc.bcm.edu	37	15	38776827	38776827	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	FAM98B_ENST00000397609,NS,carcinoma,0,1	FAM98B_ENST00000397609	NM_173611	exon8	c.T1269A	p.G423G	TGGTGGTGGTGGT	.	10	2	9	0	.	0
NUP210L	91181	hgsc.bcm.edu	37	1	153965494	153965494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_207308	exon39	c.C5563A	p.P1855T	TACCTGGCTGTGG	.	59	4	84	0	.	.
OR6C2	341416	hgsc.bcm.edu	37	12	55846882	55846882	+	Silent	SNP	G	G	T	rs142733366	alternate_allele	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	OR6C2,shoulder,malignant_melanoma,0,1	OR6C2	NM_054105	exon1	c.G885T	p.V295V	GCAAGTGAAACAA	.	35	2	25	0	.	0
NCOA4	8031	hgsc.bcm.edu;bcgsc.ca	37	10	51580885	51580885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_001145261	exon5	c.G336T	p.L112F	GTTATTGGGCCAG	.	77	4	69	0	.	.
VANGL1	81839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	116206776	116206776	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_138959	exon4	c.C699A	p.I233I	CTTCATCCATTAC	.	31	9	29	0	.	.
PPARD	5467	hgsc.bcm.edu	37	6	35392430	35392430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PPARD,caecum,carcinoma,0,1	PPARD	NM_001171818	exon8	c.C952A	p.R318S	TTCCTGCGCAGCC	.	18	2	27	0	.	0
EIF4ENIF1	56478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	31854517	31854517	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	NM_019843	exon7	c.G907T	p.G303X	AGTCTCCTGGGGA	.	112	13	119	0	.	.
PSD	5662	hgsc.bcm.edu	37	10	104173619	104173619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	PSD_ENST00000020673,NS,carcinoma,0,2	PSD_ENST00000020673	NM_001270965	exon6	c.C1460T	p.A487V	GCCTCTGCCTCCT	.	31	2	30	0	.	0
TRPC7	57113	hgsc.bcm.edu	37	5	135561813	135561813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	TRPC7,NS,carcinoma,0,2	TRPC7	NM_020389	exon9	c.G2171T	p.R724I	TTGATTCTCATTA	.	47	2	33	0	.	0
DCP1B	196513	hgsc.bcm.edu	37	12	2062323	2062323	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.,4	.	NM_152640	exon7	c.A783G	p.Q261Q	CTTCTCTTGCTGC	.	27	2	27	1	.	63
OBSCN	84033	broad.mit.edu	37	1	228433225	228433225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	OBSCN	NM_001271223	exon13	c.C3869T	p.T1290M	AGGTGACGTGGTA	.	47	3	75	0	.	2142
RAB3GAP2	25782	broad.mit.edu	37	1	220379290	220379290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	RAB3GAP2	NM_012414	exon8	c.T671C	p.L224P	TGAAAAAGGCTAA	.	93	4	77	0	.	120
HNRNPKP3	0	broad.mit.edu	37	11	43283606	43283606	+	RNA	DEL	A	A	-	rs201499316	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	AAATGTAAAAAAA	.	6	1	5	0	.	.
TPTE2P6	0	broad.mit.edu	37	13	25155131	25155131	+	RNA	SNP	G	G	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TCCTCCGCAAGAT	.	6	2	14	0	.	.
TPTE2P6	0	broad.mit.edu	37	13	25160768	25160768	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	ATACCTTGAAGAA	.	9	5	18	0	.	.
.	0	broad.mit.edu	37	14	20098927	20098927	+	RNA	DEL	A	A	-	rs373530853		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TGGGAGAAAAAAA	.	79	3	86	5	.	.
LOC283922	0	broad.mit.edu	37	16	74372644	74372644	+	RNA	SNP	A	A	G	rs2549260	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	CTTGTCAGGGGGA	.	72	3	92	1	.	.
GPR179	440435	broad.mit.edu	37	17	36491145	36491145	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	GPR179	NM_001004334	exon7	c.G1416A	p.Q472Q	AAACAGCTGCAGC	.	5	2	12	0	.	170
PLEKHH3	79990	broad.mit.edu	37	17	40823370	40823370	+	Splice_Site	SNP	T	T	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PLEKHH3	NM_024927	exon8	c.A1283G	p.E428G	CTCACCTCCCCCG	.	81	13	88	12	.	49
MOCOS	55034	broad.mit.edu	37	18	33767560	33767560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	MOCOS	NM_017947	exon1	c.G58A	p.D20N	TCCCGGGACCCGA	.	31	8	31	0	.	84
CEACAM20	125931	broad.mit.edu	37	19	45017502	45017503	+	RNA	DEL	GC	GC	-	rs372255103	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	CEACAM20	.	.	.	.	GGTTTTGCTTTTT	.	7	3	5	0	.	31
TUBA3D	113457	broad.mit.edu	37	2	132236997	132236997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	TUBA3D	NM_080386	exon3	c.G343T	p.V115F	GAGATTGTTGACC	.	59	3	80	0	.	60
PLCG1	5335	broad.mit.edu	37	20	39793975	39793975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PLCG1	NM_182811	exon14	c.G1477A	p.G493S	AAGAATGGCATCC	.	29	3	18	0	.	111
BAGE	85319	broad.mit.edu	37	21	11096543	11096544	+	RNA	DEL	AG	AG	-	rs55694987	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TGAGACAGAGTCT	.	6	3	7	0	.	.
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	rs371252868		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	KRTAP10-6,NS,carcinoma,0,4	KRTAP10-6	NM_198688	exon1	c.C966T	p.S322S	ACCACAGGAGGGG	.	38	3	43	0	.	57
BCHE	590	broad.mit.edu;bcgsc.ca	37	3	165547680	165547680	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	BCHE	NM_000055	exon2	c.1142delG	p.G381fs	TTTAAACCTTCCT	.	50	7	89	0	.	136
EGFEM1P	0	broad.mit.edu	37	3	168546588	168546590	+	RNA	DEL	AAA	AAA	-	rs11296821	bycluster;alternate_allele	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TTTGTTAAAAAAA	.	7	2	4	0	A|1.000;|0.000	.
C6orf132	647024	broad.mit.edu	37	6	42074970	42074970	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	C6orf132	NM_001164446	exon4	c.680delC	p.P227fs	GGCGGTGGGGGGG	.	6	2	6	0	.	48
.	84443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	106844361	106844361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	AGGTCTCTTCCAG	.	45	19	66	0	.	.
TCEAL2	140597	broad.mit.edu	37	X	101382096	101382096	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	TCEAL2	NM_080390	exon3	c.A294G	p.G98G	AGGGGGAAGGGCA	.	50	3	41	0	.	27
PKLR	5313	ucsc.edu	37	1	155261558	155261558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PKLR	NM_000298	exon10	c.G1607A	p.G536D	TCAATGCCAAATT	.	31	4	16	0	.	70
ARHGAP25	9938	ucsc.edu;bcgsc.ca	37	2	69046554	69046554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	ARHGAP25	.	.	.	.	TTAGGTGATGCAG	.	43	4	37	0	.	175
AFF4	27125	ucsc.edu	37	5	132219204	132219204	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	AFF4	NM_014423	exon20	c.C3192T	p.G1064G	TGAATTGCCTGGT	.	36	4	27	0	.	120
PKN3	29941	ucsc.edu;bcgsc.ca	37	9	131475475	131475475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PKN3	NM_013355	exon7	c.C980T	p.A327V	AGCTTGCCAGTGA	.	24	4	40	0	.	62
MAML2	84441	ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862	bycluster	TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	MAML2,rectum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	39	5	34	0	C|0.250;T|0.750	94
APLP2	334	ucsc.edu;bcgsc.ca	37	11	129992294	129992294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	APLP2	NM_001243299	exon6	c.G838T	p.D280Y	GTGGAGGACCGAG	.	40	4	48	0	.	71
AMFR	267	ucsc.edu;bcgsc.ca	37	16	56442015	56442015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	AMFR	NM_001144	exon4	c.C527A	p.P176H	GTGGTGGGCGAGA	.	28	4	25	0	.	40
SLC39A6	25800	ucsc.edu	37	18	33702188	33702188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	SLC39A6	NM_012319	exon5	c.A1186G	p.M396V	TTTCCATTGCTGG	.	24	4	14	0	.	81
AGL	178	bcgsc.ca	37	1	100366398	100366398	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	AGL	NM_000644	exon26	c.C3569T	p.P1190L	CTGCTCCTTTGCC	.	63	4	43	0	.	137
FAM20B	9917	bcgsc.ca	37	1	179041172	179041172	+	Missense_Mutation	SNP	G	A	A	rs200757870		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	FAM20B	NM_014864	exon8	c.G1123A	p.V375M	GACGCCGTGGACC	.	24	3	34	0	G|0.999;A|0.001	38
ASPM	259266	bcgsc.ca	37	1	197094085	197094085	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	ASPM	NM_001206846	exon12	c.G3083T	p.G1028V	GTATTTCCTATAA	.	63	4	59	0	.	444
THUMPD3	25917	bcgsc.ca	37	3	9406699	9406699	+	Splice_Site	SNP	G	T	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	THUMPD3	.	.	.	.	TTTAAAGGACAGT	.	23	3	32	0	.	46
GABRA2	2555	bcgsc.ca	37	4	46263983	46263983	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	GABRA2	NM_000807	exon9	c.G1019T	p.R340I	CATCCTCTTTTGG	.	22	3	68	0	.	134
F11	2160	bcgsc.ca	37	4	187194273	187194273	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	F11	NM_000128	exon4	c.G267T	p.V89V	AAGAGTGAATAGG	.	21	3	36	0	.	65
FOXK1	221937	bcgsc.ca	37	7	4796694	4796694	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	KIAA0415_ENST00000450194,NS,carcinoma,-2,2	FOXK1	NM_001037165	exon5	c.G1120T	p.G374W	GAGCCTGGGAAGG	.	76	4	91	0	.	64
.	0	bcgsc.ca	37	9	103493949	103493949	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	GCCTCTGGCCGTA	.	11	3	18	0	.	.
MPP7	143098	bcgsc.ca	37	10	28413008	28413008	+	Silent	SNP	G	A	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	MPP7	NM_173496	exon10	c.C567T	p.N189N	TATCCCGTTGACT	.	59	4	53	0	.	60
ATRNL1	26033	bcgsc.ca	37	10	116853364	116853364	+	Silent	SNP	C	T	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	ATRNL1	.	.	.	.	TCCCTCCTGACCG	.	61	4	65	0	.	219
BEST3	144453	bcgsc.ca	37	12	70091527	70091527	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	BEST3	NM_032735	exon2	c.C52A	p.H18N	ACCTATGAAATCC	.	58	4	72	0	.	129
LINC00643	646113	bcgsc.ca	37	14	62594889	62594889	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	AAGAGAGCTATGA	.	47	4	62	0	.	.
.	0	bcgsc.ca	37	15	102299929	102299929	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	AGAGCAGGCAGAC	.	172	8	167	1	.	.
PPL	5493	bcgsc.ca	37	16	4938984	4938984	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	PPL	NM_002705	exon19	c.G2392A	p.V798I	CCTTTACAGCTTG	.	57	4	50	0	.	168
ZNF527	84503	bcgsc.ca	37	19	37879999	37879999	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	ZNF527	NM_032453	exon5	c.A1048G	p.R350G	CATCAGAGGATCC	.	14	3	27	0	.	78
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578004	1578005	+	RNA	DNP	TC	TC	CT	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	TC	TC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	.	.	.	.	.	.	TGAGTTCCCTTGC	.	74	5	74	0	.	.
CECR2	27443	hgsc.bcm.edu	37	22	18016909	18016909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA38-01A-11D-A417-09	TCGA-W5-AA38-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0517c599-2c76-49f1-a280-75efe40220c4	02a37a1a-eea5-498e-994f-d32913700d81	CECR2,NS,carcinoma,0,1	CECR2	.	p.K388R	.	.	AAAAAAAGACTAA	.	54	3	81	0	.	0
