Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89720806	89720806	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.,6	.	NM_000314	exon8	c.956delC	p.T319fs	ACTTACTTTAACA	.	61	16	112	0	.	3652
WNK4	65266	hgsc.bcm.edu	37	17	40946837	40946838	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032387	exon14	c.2398_2399insTC	p.F800fs	ACAGCCTTCTCCA	.	39	0	56	0	.	.
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52712524	52712533	+	Frame_Shift_Del	DEL	TGGTGCCCTA	TGGTGCCCTA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TGGTGCCCTA	TGGTGCCCTA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018313	exon3	c.220_229del	p.74_77del	TCGCTTTGGTGCC	.	28	14	71	0	.	.
DCUN1D3	123879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20871607	20871607	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173475	exon3	c.517delG	p.A173fs	TTTGGCTTCTGTT	.	38	21	57	0	.	.
GIMAP8	155038	hgsc.bcm.edu	37	7	150174405	150174406	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_175571	exon5	c.1535_1536insC	p.E512fs	TAGAAGAGGAGGT	.	34	14	63	0	.	.
SAE1	10055	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	47712448	47712450	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005500	exon9	c.980_982del	p.327_328del	CAACAACTTCTTC	.	37	13	57	0	.	.
STK11IP	114790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220474091	220474091	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052902	exon17	c.1965delG	p.L655fs	GAGCTGCTTGCCG	.	62	25	74	0	.	.
P4HA2	8974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131530672	131530672	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004199	exon14	c.1485delT	p.G495fs	TAGTCACCTTCCC	.	45	26	48	0	.	.
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123168345	123168360	+	Frame_Shift_Del	DEL	AACCTGGTAGAACATC	AACCTGGTAGAACATC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AACCTGGTAGAACATC	AACCTGGTAGAACATC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015312	exon33	c.5344_5359del	p.1782_1787del	ATGCAGAACCTGG	.	34	16	161	0	.	.
GC	2638	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	72629209	72629228	+	In_Frame_Del	DEL	AGCTGGAGTCTCTAGAAAAC	AGCTGGAGTCTCTAGAAAAC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AGCTGGAGTCTCTAGAAAAC	AGCTGGAGTCTCTAGAAAAC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001204307	exon7	c.664_675del	p.222_225del	TGTTTAAGCTGGA	.	24	11	71	0	.	.
APBB3	10307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	139938329	139938329	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006051	exon12	c.1324delC	p.L442fs	CTTGAGCCGCAGG	.	33	12	34	0	.	.
DAZAP1	26528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1428934	1428956	+	Frame_Shift_Del	DEL	GCTGCCAATGGCTGGGCAGGCCA	GCTGCCAATGGCTGGGCAGGCCA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GCTGCCAATGGCTGGGCAGGCCA	GCTGCCAATGGCTGGGCAGGCCA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018959	exon8	c.639_661del	p.213_221del	CCCAACGCTGCCA	.	90	14	142	0	.	.
APBB3	10307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	139938337	139938338	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GG	GG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006051	exon12	c.1315_1316del	p.439_439del	GCAGGCGGGCACG	.	25	12	34	0	.	.
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74274503	74274507	+	Frame_Shift_Del	DEL	GAAGA	GAAGA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GAAGA	GAAGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000477	exon4	c.462_466del	p.154_156del	GACAATGAAGAGA	.	26	13	70	0	.	.
GIMAP8	155038	hgsc.bcm.edu	37	7	150174406	150174407	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_175571	exon5	c.1536_1537insA	p.E512fs	AGAAGAGGAGGTC	.	35	14	64	0	.	.
UGT2B15	7366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	69520862	69520862	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001076	exon4	c.1045delG	p.G349fs	GGAACCTAAAGTA	.	53	35	146	0	.	.
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233660789	233660809	+	In_Frame_Del	DEL	GGCTTATCTCCAAGACAGTGC	GGCTTATCTCCAAGACAGTGC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGCTTATCTCCAAGACAGTGC	GGCTTATCTCCAAGACAGTGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001103147	exon16	c.1559_1579del	p.520_527del	AATGGTGGCTTAT	.	29	11	67	0	.	.
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	65425957	65425973	+	Frame_Shift_Del	DEL	TTCCAGTATCTCTCTCG	TTCCAGTATCTCTCTCG	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TTCCAGTATCTCTCTCG	TTCCAGTATCTCTCTCG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GUSB,NS,carcinoma,0,1	GUSB	NM_000181	exon12	c.1868_1884del	p.623_628del	GCAATCTTCCAGT	.	47	11	113	0	.	0
FCGR1B	2210	hgsc.bcm.edu;broad.mit.edu	37	1	120934442	120934442	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001244910	exon3	c.247delT	p.Y83fs	CCTGTATTCACCA	.	87	14	136	0	.	.
VPS41	27072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	38860830	38860830	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014396	exon6	c.358delC	p.H120fs	CTCGTGAAATTCT	.	49	21	65	0	.	.
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99247826	99247826	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000777	exon12	c.1284delT	p.P428fs	ATGTAAGGATCTA	.	61	22	121	0	.	.
ELMOD1	55531	hgsc.bcm.edu	37	11	107518233	107518234	+	In_Frame_Ins	INS	-	-	GGATTTCTA	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018712	exon7	c.460_461insGGATTTCTA	p.R154delinsRISR	GAATCTCGGATTT	.	54	0	98	0	.	.
APBB3	10307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	139938333	139938335	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006051	exon12	c.1318_1320del	p.440_440del	AGCCGCAGGCGGG	.	25	12	34	0	.	.
IPO13	9670	hgsc.bcm.edu	37	1	44423802	44423803	+	In_Frame_Ins	INS	-	-	TGC	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014652	exon8	c.1694_1695insTGC	p.Y565delinsYA	CTCCCTATGCTGC	.	30	10	27	0	.	.
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	435664	435674	+	Frame_Shift_Del	DEL	GGGTTTCTCTC	GGGTTTCTCTC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGGTTTCTCTC	GGGTTTCTCTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133474	exon3	c.2583_2593del	p.861_865del	TGTGTAGGGTTTC	.	51	13	85	0	.	.
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	23527639	23527654	+	Frame_Shift_Del	DEL	CAATAAGTCACACCTC	CAATAAGTCACACCTC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CAATAAGTCACACCTC	CAATAAGTCACACCTC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020227	exon11	c.2441_2456del	p.814_819del	CTTTAGCAATAAG	.	69	16	95	0	.	.
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1093708	1093730	+	Frame_Shift_Del	DEL	GTTGGTGTAGTTGGCCAGCTTGT	GTTGGTGTAGTTGGCCAGCTTGT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GTTGGTGTAGTTGGCCAGCTTGT	GTTGGTGTAGTTGGCCAGCTTGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006598	exon3	c.261_283del	p.87_95del	GCTCAGGTTGGTG	.	26	10	56	0	.	.
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99247829	99247829	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000777	exon12	c.1281delT	p.D427fs	TAAGGATCTATGC	.	62	22	117	0	.	.
NDUFA13	51079	hgsc.bcm.edu	37	19	19638817	19638818	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015965	exon5	c.317_318insG	p.V106fs	CACAGGTGGGGGA	.	52	12	89	0	.	.
PEAK1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	77450866	77450885	+	Frame_Shift_Del	DEL	TACAAGGGTTCGGGTCCATA	TACAAGGGTTCGGGTCCATA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TACAAGGGTTCGGGTCCATA	TACAAGGGTTCGGGTCCATA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024776	exon6	c.3292_3311del	p.1098_1104del	TTGCACTACAAGG	.	47	13	86	0	.	.
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	62272276	62272283	+	Frame_Shift_Del	DEL	GATTTTCT	GATTTTCT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GATTTTCT	GATTTTCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018469	exon3	c.1818_1825del	p.606_609del	GTCATAGATTTTC	.	37	11	68	0	.	.
CYP3A5	1577	hgsc.bcm.edu	37	7	99247827	99247829	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000777	exon12	c.1281_1283del	p.427_428del	TGTAAGGATCTAT	.	61	0	123	0	.	.
PRDX1	5052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45984678	45984687	+	Frame_Shift_Del	DEL	GGGGCAGGGT	GGGGCAGGGT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGGGCAGGGT	GGGGCAGGGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181696	exon2	c.30_39del	p.10_13del	AAGTTGGGGGCAG	.	49	10	100	0	.	.
TGFBR2	7048	hgsc.bcm.edu;bcgsc.ca	37	3	30664759	30664775	+	Frame_Shift_Del	DEL	AGACATAGTAAAGTATC	AGACATAGTAAAGTATC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AGACATAGTAAAGTATC	AGACATAGTAAAGTATC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001024847	exon2	c.162_169del	p.54_57del	CCACTGAGACATA	.	20	4	99	0	.	.
BAIAP3	8938	hgsc.bcm.edu	37	16	1393405	1393430	+	Frame_Shift_Del	DEL	TCAGCAGCCGCCACCATCAAACCTGC	TCAGCAGCCGCCACCATCAAACCTGC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TCAGCAGCCGCCACCATCAAACCTGC	TCAGCAGCCGCCACCATCAAACCTGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003933	exon15	c.1381_1406del	p.461_469del	GGCAGGTCAGCAG	.	50	0	95	0	.	.
ZNF720	124411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31734032	31734052	+	In_Frame_Del	DEL	GGGATGTGATGTTAGAGAACT	GGGATGTGATGTTAGAGAACT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGGATGTGATGTTAGAGAACT	GGGATGTGATGTTAGAGAACT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001130913	exon2	c.88_108del	p.30_36del	TATATGGGGATGT	.	62	0	117	0	.	.
ACADVL	37	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7124970	7124983	+	Frame_Shift_Del	DEL	GAAAGAAAAATACC	GAAAGAAAAATACC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GAAAGAAAAATACC	GAAAGAAAAATACC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001270447	exon8	c.659_672del	p.220_224del	GGCCCAGAAAGAA	.	20	9	41	0	.	.
TBC1D10B	26000	hgsc.bcm.edu;broad.mit.edu	37	16	30369466	30369486	+	In_Frame_Del	DEL	CCGCTCCTTCTCCTGTTTCTG	CCGCTCCTTCTCCTGTTTCTG	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CCGCTCCTTCTCCTGTTTCTG	CCGCTCCTTCTCCTGTTTCTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015527	exon9	c.2207_2227del	p.736_743del	CTTCTCCCGCTCC	.	58	2	77	0	.	.
R3HDM2	22864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57682695	57682711	+	Splice_Site	DEL	TGTTGGTTAACATCAAA	TGTTGGTTAACATCAAA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TGTTGGTTAACATCAAA	TGTTGGTTAACATCAAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGAGTCTGTTGGT	.	44	6	90	0	.	.
ATF6B	1388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32086802	32086813	+	In_Frame_Del	DEL	CAGTACTGCTTG	CAGTACTGCTTG	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CAGTACTGCTTG	CAGTACTGCTTG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004381	exon10	c.1073_1084del	p.358_362del	GTCAGCCAGTACT	.	44	19	58	0	.	.
HNRNPU-AS1	284702	hgsc.bcm.edu	37	1	245006151	245006152	+	RNA	INS	-	-	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCCTAATAAAAAA	.	33	18	25	0	.	.
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	9	13175817	13175837	+	In_Frame_Del	DEL	GCATGACACACTCAGCATTAC	GCATGACACACTCAGCATTAC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GCATGACACACTCAGCATTAC	GCATGACACACTCAGCATTAC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001261406	exon21	c.2970_2990del	p.990_997del	TTTGAAGCATGAC	.	42	0	84	0	.	.
CDKN1A	1026	hgsc.bcm.edu	37	6	36652119	36652192	+	Frame_Shift_Del	DEL	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000389	exon2	c.240_313del	p.80_105del	CCCACGGGGCCCC	.	35	0	37	0	.	.
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185329428	185329449	+	Frame_Shift_Del	DEL	GTGTTTCTAAGTTCTCAAAGAA	GTGTTTCTAAGTTCTCAAAGAA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GTGTTTCTAAGTTCTCAAAGAA	GTGTTTCTAAGTTCTCAAAGAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021627	exon8	c.723_732del	p.241_244del	CTTTTTGTGTTTC	.	38	8	58	0	.	.
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144922029	144922029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001002811	exon5	c.C1489G	p.P497A	GAGCTGGAGAAGT	.	65	11	75	0	.	.
PRDM13	59336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	100062584	100062584	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021620	exon4	c.A2073G	p.T691T	CTTCACAGACGAC	.	11	6	14	0	.	.
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132561381	132561381	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015082	exon9	c.A1146C	p.S382S	CTGAGTTGAGACA	.	63	33	90	0	.	.
LIMD1-AS1	644714	hgsc.bcm.edu;ucsc.edu	37	3	45719739	45719739	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTTCACCAAATCA	.	23	14	74	0	.	.
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	135204542	135204542	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015046	exon10	c.T2443G	p.L815V	CAGTCAAATTTTC	.	10	5	13	0	.	.
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48745811	48745811	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003786	exon14	c.G1803C	p.R601R	GAAACGGATCCAG	.	46	16	82	0	.	.
ISL2	64843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	76632810	76632810	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_145805	exon4	c.C705A	p.I235I	GGTCATCCGCGTC	.	63	21	71	0	.	.
RCOR1	23186	hgsc.bcm.edu	37	14	103173699	103173699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015156	exon5	c.G510A	p.M170I	TGGGATGCTCTTC	.	45	3	69	0	.	.
XYLB	9942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38401886	38401886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005108	exon3	c.T197G	p.L66R	CAGTACTAATGTG	.	13	11	37	0	.	.
UROD	7389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45478646	45478646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000374	exon2	c.T88G	p.Y30D	ACAGACTACACTC	.	26	11	72	0	.	.
IL33	90865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	6254494	6254494	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_033439	exon7	c.A553C	p.T185P	ATGGTAACCCTGA	.	34	16	73	0	.	.
SKP2	6502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36181926	36181926	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005983	exon10	c.T1068G	p.L356L	TGAACTTGGAGAA	.	95	18	72	0	.	.
PPP1R3C	5507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	93390426	93390426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005398	exon2	c.A212G	p.Q71R	TCATTCTGTGATT	.	51	29	88	0	.	.
MALAT1	378938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	65268625	65268625	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTTACTTCCTCAC	.	47	26	91	0	.	.
C1S	716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7177759	7177759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_201442	exon12	c.G1871A	p.G624D	AGAAGGGCATGGA	.	46	27	94	0	.	.
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36506015	36506015	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024852	exon16	c.A2145C	p.R715R	CACTCGATTATTT	.	45	17	59	0	.	.
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76885944	76885944	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001127179	exon17	c.A2078C	p.K693T	GTGTGAAGCCGGC	.	35	13	25	0	.	.
MEIS2	4212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	37329152	37329152	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_170676	exon8	c.T763G	p.L255V	TGTCTAAACCATC	.	45	16	80	0	.	.
RREB1	6239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7249158	7249158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001003699	exon13	c.T5186G	p.L1729R	CAATCCTGGCCAC	.	28	14	45	0	.	.
CPSF1	29894	hgsc.bcm.edu;bcgsc.ca	37	8	145623960	145623960	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013291	exon18	c.C1707T	p.G569G	TCTGCGGCCGTCG	.	71	4	97	0	.	.
RHPN1	114822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144462004	144462004	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052924	exon9	c.A951G	p.A317A	GGTGGCAGCCGAG	.	37	20	45	0	.	.
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242008393	242008393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001080437	exon23	c.C3262A	p.H1088N	GAGGAGCACCCCA	.	70	27	73	0	.	.
SLC25A27	9481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46630146	46630146	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001204051	exon4	c.T417G	p.V139V	TGGTGTTATTGGC	.	67	15	71	0	.	.
ATP9B	374868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	76903819	76903819	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198531	exon6	c.A685T	p.S229C	GTTAAGAGTTCAG	.	63	27	129	0	.	.
ZBED4	9889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50278233	50278233	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014838	exon2	c.A923T	p.H308L	GCATTCACTGCAT	.	17	7	27	0	.	.
SPAG4	6676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34205495	34205495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003116	exon3	c.G463T	p.V155F	GTGCTGGTCAGCA	.	22	10	48	0	.	.
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86697428	86697428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001146688	exon11	c.G1621A	p.A541T	ATCGTGGCACAGT	.	53	19	86	0	.	.
GALNT4	8693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	89916734	89916734	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003774	exon1	c.G1593A	p.W531X	AAAATGCCAAATA	.	39	18	57	0	.	.
TTL	150465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113258837	113258837	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153712	exon4	c.A524C	p.N175T	TAGACAACCAGGG	.	123	54	240	0	.	.
GNN	0	hgsc.bcm.edu	37	12	104264191	104264191	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGCACTAGAATGG	.	29	15	56	0	.	.
TMTC4	84899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101320946	101320946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TMTC4,NS,carcinoma,0,1	TMTC4	NM_032813	exon3	c.C106T	p.L36F	GAGGAAGAACAGA	.	47	19	89	0	.	0
DDB2	1643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47256429	47256429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000107	exon6	c.T824G	p.V275G	GCCAGGTTAGAGG	.	30	11	35	0	.	.
PANX1	24145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93886741	93886741	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015368	exon2	c.A266T	p.Q89L	CTGTTCAGCAGAA	.	27	14	43	0	.	.
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	111594968	111594968	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022140	exon9	c.C753T	p.H251H	CTTGAAGTGAACC	.	73	20	77	0	.	.
ATXN7L3B	552889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	74932077	74932077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001136262	exon1	c.A185C	p.Q62P	GCATTCAGCCAGT	.	37	14	71	0	.	.
TYRP1	7306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	12708981	12708981	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000550	exon8	c.G1413T	p.R471R	AGGTCGGGAGTTT	.	30	17	40	0	.	.
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153296425	153296425	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012177	exon2	c.T435C	p.S145S	ATAGCCACTGTCT	.	39	20	52	0	.	.
SMYD2	56950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214503534	214503534	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020197	exon8	c.C729A	p.L243L	TGATCTCCTGTAC	.	157	34	100	0	.	.
RAD17	5884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	68680714	68680714	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133339	exon5	c.T632A	p.M211K	TACAAATGCTTGG	.	61	33	74	0	.	.
RUNDC3A	10900	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42395541	42395541	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001144825	exon11	c.T1276G	p.F426V	GCGAGCTTCAAAT	.	27	10	82	0	.	.
C9orf96	169436	hgsc.bcm.edu;bcgsc.ca	37	9	136270413	136270413	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153710	exon18	c.G1911A	p.K637K	TATGAAGGCCCTG	.	6	4	17	0	.	.
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125836700	125836700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012197	exon17	c.T2246C	p.L749S	TGCTTTTATGTGA	.	57	22	80	0	.	.
ST7-OT4	338069	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	116595119	116595119	+	RNA	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTTTTGAGTCTGT	.	26	11	50	0	.	.
NDUFA13	51079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	19638823	19638823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015965	exon5	c.A323G	p.E108G	TGGGGGAGTCTGT	.	53	18	89	0	.	.
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154858051	154858051	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007287	exon10	c.A927C	p.Q309H	GATCCAAAATAAC	.	76	46	52	0	.	.
MAST1	22983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12975632	12975632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014975	exon13	c.G1376A	p.C459Y	GCGACTGTGCCAC	.	29	10	44	0	.	.
APOL2	23780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36624205	36624205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030882	exon5	c.C259T	p.R87W	TCAACCGAGGAAA	.	30	12	43	0	.	.
KIAA0247	9766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70175521	70175521	+	Missense_Mutation	SNP	G	G	A	rs368679025		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014734	exon5	c.G586A	p.V196I	CCCAGAGTACAGA	.	16	6	30	0	.	.
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56759748	56759748	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018261	exon15	c.A1755G	p.K585K	GATTAAAATATTT	.	28	16	61	0	.	.
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167671562	167671562	+	Silent	SNP	C	C	T	rs368288670		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ODZ2_ENST00000519204,NS,carcinoma,0,3	ODZ2_ENST00000519204	NM_001122679	exon26	c.C5631T	p.S1877S	CAGCAGCGGGCTG	.	24	5	27	0	.	0
GCNT2	2651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	10621588	10621588	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_145649	exon4	c.T930C	p.V310V	AGGTGTTCCTGGC	.	25	9	44	0	.	.
SKIDA1	387640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21805461	21805461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_207371	exon4	c.A1291G	p.S431G	CCCCGCTGCCCCC	.	30	15	36	0	.	.
ZSWIM3	140831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44506452	44506452	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080752	exon2	c.T1255G	p.F419V	CTCTGCTTTGTGG	.	26	10	47	0	.	.
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123805577	123805577	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001163278	exon6	c.A1124C	p.Y375S	GGAGAGTAAGTAG	.	35	30	58	0	.	.
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32820888	32820888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000593	exon1	c.C706T	p.L236F	CTAGAAGCCGACG	.	43	12	50	0	.	.
SIPA1	6494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65416935	65416935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006747	exon10	c.T2509G	p.S837A	CAGAACTCGCTGT	.	31	13	31	0	.	.
VPS41	27072	hgsc.bcm.edu	37	7	38791865	38791865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014396	exon22	c.C1837A	p.H613N	TTTCATGGTAACG	.	83	3	147	0	.	.
PAIP2	51247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138700374	138700374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001033112	exon3	c.T260G	p.I87S	ACCAAATCCAAGA	.	49	17	60	0	.	.
SAMD4A	23034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55169112	55169112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015589	exon2	c.T529C	p.Y177H	CACTACTATCACC	.	31	16	30	0	.	.
MIR9-3	407051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	89911321	89911321	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACCGAAAGTAGAA	.	101	53	103	0	.	.
VWC2L	402117	hgsc.bcm.edu	37	2	215279158	215279158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	VWC2L,NS,carcinoma,0,1	VWC2L	NM_001080500	exon2	c.G241T	p.D81Y	GCTCTAGATGGAC	.	68	3	91	0	.	0
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4098471	4098471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001257999	exon10	c.C1300G	p.L434V	AATCTAGTCTGAA	.	16	6	46	0	.	.
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10433774	10433774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005885	exon26	c.C2711T	p.P904L	CACCACCTCCACA	.	114	87	79	0	.	.
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	94223499	94223499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004969	exon21	c.A2750G	p.N917S	TCAAAATTATATT	.	46	21	79	0	.	.
MARCH2	51257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8486775	8486775	+	Silent	SNP	C	C	T	rs368370666		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005415	exon2	c.C51T	p.S17S	CTGCTCCGGCAGC	.	47	21	67	0	.	.
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198288622	198288622	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012433	exon2	c.T105G	p.S35S	ACCTGTAGAATCG	.	39	19	67	0	.	.
AOX2P	344454	hgsc.bcm.edu	37	2	201642244	201642244	+	RNA	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CACTTAAGAGGAG	.	5	4	10	0	.	.
ATP6V1G1	9550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117359886	117359886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004888	exon3	c.G220A	p.E74K	GAAGTGGAGAAGG	.	52	16	54	0	.	.
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10463198	10463198	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003331	exon23	c.A3230C	p.K1077T	TAGAACTTATACT	.	36	14	67	0	.	.
EDEM2	55741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33722567	33722567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018217	exon6	c.T676C	p.W226R	TCTCCCAGAGGCG	.	29	13	28	0	.	.
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201478642	201478642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001159	exon15	c.T1564C	p.F522L	ATCAGCTTCCTCT	.	11	6	30	0	.	.
RUSC1-AS1	284618	hgsc.bcm.edu;ucsc.edu	37	1	155290956	155290956	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001039517	exon2	c.C324A	p.L108L	AGGCTGGAGCCCG	.	40	4	44	0	.	.
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3067439	3067439	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003803	exon38	c.A4879T	p.R1627W	CGGTCCTCCCAGC	.	27	11	59	0	.	.
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225738772	225738772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014689	exon11	c.G1198T	p.A400S	TGAGGGCTTTACA	.	45	13	81	0	.	.
C9orf85	138241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	74526743	74526743	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182505	exon1	c.G93A	p.V31V	AAGTGTGCAGACC	.	34	16	47	0	.	.
SPRY4	81848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141694180	141694180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030964	exon3	c.G563T	p.C188F	CATTTACACTTCC	.	40	11	30	0	.	.
IPO11	51194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	61747688	61747688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001134779	exon5	c.A564C	p.L188F	AGCATTACTTACC	.	66	18	73	0	.	.
DOM3Z	1797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	31938791	31938791	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005510	exon3	c.G490T	p.E164X	CCACTTCACTCAG	.	54	28	73	0	.	.
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110555049	110555049	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006621	exon4	c.A442C	p.I148L	GCTAAAATAGTGG	.	7	7	15	0	.	.
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	11419301	11419301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015204	exon24	c.T4546A	p.S1516T	TACAAGACCTGTC	.	48	20	70	0	.	.
CCDC170	80129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151869440	151869440	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025059	exon5	c.T590G	p.L197R	TTCAGCTTAGAGA	.	91	44	91	0	.	.
C1QTNF3-AMACR	0	hgsc.bcm.edu	37	5	34004595	34004595	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCTTGTCTTCTTC	.	48	6	43	0	.	.
RNPS1	10921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2314620	2314620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006711	exon2	c.A25G	p.K9E	AGCTCTTCTTTTT	.	26	16	18	0	.	.
DDX11	1663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	31256769	31256769	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030653	exon27	c.G2720A	p.X907X	CTTCCTGATGGGC	.	48	25	65	0	.	.
PAIP2	51247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138700372	138700372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001033112	exon3	c.A258C	p.Q86H	GGACCAAATCCAA	.	48	16	60	0	.	.
CHD8	57680	hgsc.bcm.edu	37	14	21896185	21896185	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CHD8,NS,carcinoma,0,1	CHD8	NM_001170629	exon3	c.C1444A	p.R482R	AGACTCGAGGTAT	.	29	2	33	0	.	0
ATAD3B	83858	hgsc.bcm.edu	37	1	1417592	1417592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ATAD3B_ENST00000378741,NS,carcinoma,0,2	ATAD3B_ENST00000378741	NM_031921	exon6	c.G589A	p.A197T	GCGCGCGCCAAGG	.	53	3	68	0	.	0
ZNF569	148266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37904939	37904939	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152484	exon6	c.T621C	p.I207I	AGTATGAATTCTC	.	61	26	92	0	.	.
MIR600	693185	hgsc.bcm.edu;ucsc.edu	37	9	125873860	125873860	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCTGTAAGTAACT	.	37	17	41	0	.	.
C2CD2	25966	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	43327893	43327893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015500	exon9	c.G1019A	p.G340D	AGCAGACCTGAAA	.	27	4	80	0	.	.
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11704585	11704585	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_147780	exon10	c.T769G	p.S257A	AGTCCGAATACAC	.	43	14	62	0	.	.
ELN	2006	hgsc.bcm.edu	37	7	73474785	73474785	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001081754	exon25	c.T1716C	p.G572G	TGCTGGTGTTCCT	.	16	4	31	0	.	.
CYBB	1536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	37653034	37653034	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000397	exon5	c.T454G	p.Y152D	GAAAGTTATCTCA	.	25	20	33	0	.	.
SLC17A3	10786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25850686	25850686	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006632	exon8	c.759+1G>A	.	TACTCACGTCTCT	.	40	24	45	0	.	.
SYNCRIP	10492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	86351134	86351134	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006372	exon2	c.A24G	p.G8G	ACCATTTCCATTA	.	56	28	66	0	.	.
MEX3C	51320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	48703410	48703410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016626	exon2	c.G1291A	p.V431I	GAGGAACAGGATT	.	12	6	26	0	.	.
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	39921601	39921601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001123385	exon10	c.T4219C	p.Y1407H	GATCATAGTCCGA	.	28	23	72	0	.	.
RABL6	55684	hgsc.bcm.edu	37	9	139734291	139734291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001173988	exon13	c.C1907T	p.A636V	AGGAGGCCGGACC	.	70	4	94	0	.	.
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113205826	113205826	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153366	exon27	c.T4638A	p.P1546P	CATACCAGGTATG	.	20	5	31	0	.	.
STAT2	6773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56743381	56743381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005419	exon14	c.A1249T	p.S417C	TATTGCTGCCCTT	.	34	13	50	0	.	.
ALG11	440138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52598853	52598853	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001004127	exon3	c.G987A	p.K329K	TAAGAAGATGGTT	.	38	17	60	0	.	.
ACSM2B	348158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20554487	20554487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182617	exon12	c.G1379A	p.G460E	GCCCGTCCCATAA	.	164	52	195	0	.	.
RALGPS2	55103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	178745908	178745908	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152663	exon2	c.A9C	p.L3L	GGACCTAATGAAC	.	53	34	53	0	.	.
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64514795	64514795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005609	exon18	c.A2213C	p.E738A	CGAAGCTCAGGAA	.	21	13	23	0	.	.
DLL1	28514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	170597586	170597586	+	Splice_Site	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005618	exon5	c.413-2A>C	.	GTTTTCTACGGGG	.	28	11	33	0	.	.
YDJC	150223	hgsc.bcm.edu;bcgsc.ca	37	22	21982727	21982727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001017964	exon5	c.C952A	p.L318M	GTTCCAGGAAGGG	.	48	4	59	0	.	.
MTBP	27085	hgsc.bcm.edu	37	8	121519076	121519076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MTBP,NS,carcinoma,0,1	MTBP	NM_022045	exon16	c.C1858T	p.L620F	GGAGATCTTCAAC	.	66	3	83	0	.	0
TNC	3371	hgsc.bcm.edu	37	9	117797604	117797604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TNC,NS,malignant_melanoma,0,1	TNC	NM_002160	exon22	c.C5666A	p.S1889Y	CTTGGAGAATCGA	.	44	2	56	0	.	0
LINC00710	254312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	10989451	10989451	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AACATCATTTGTA	.	41	19	110	0	.	.
GPR98	84059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	90079733	90079733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032119	exon67	c.A13512C	p.R4504S	GAGCAGAATCATA	.	66	21	91	0	.	.
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113079392	113079392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198581	exon8	c.A1036G	p.K346E	AACTGTAAATTTT	.	73	38	125	0	.	.
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8527458	8527458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_031203	exon3	c.A329C	p.K110T	AAGGAAAGTCAAG	.	65	21	86	0	.	.
FLJ31813	0	hgsc.bcm.edu	37	10	51816497	51816497	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TATTAAAATGCTG	.	102	49	216	0	.	.
ZNF526	116115	hgsc.bcm.edu	37	19	42729173	42729173	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ZNF526,NS,carcinoma,0,1	ZNF526	NM_133444	exon3	c.C618T	p.C206C	CCTCTGCGCCACC	.	19	2	27	0	.	0
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu	37	1	85666679	85666679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032184	exon1	c.A1G	p.M1V	CGTGCATGGCCTG	.	14	6	9	0	.	.
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52732359	52732359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004799	exon6	c.A2311C	p.S771R	GCCTCAAGCCAGA	.	57	19	69	0	.	.
PRKAB2	5565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	146639504	146639504	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005399	exon3	c.G165C	p.G55G	TTTGTCCCCAGGG	.	46	25	35	0	.	.
CSNK1G2-AS1	255193	hgsc.bcm.edu	37	19	1953510	1953510	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ATCTGAATTTTGG	.	28	13	50	0	.	.
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	209189656	209189656	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015040	exon19	c.C2353G	p.R785G	ATCAGTCGAATGA	.	54	19	79	0	.	.
ABI3	51225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47299925	47299925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016428	exon8	c.T949C	p.Y317H	ACACTGTACCCAT	.	24	10	32	0	.	.
SLC3A2	6520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62649510	62649510	+	Missense_Mutation	SNP	C	C	A	rs138578664	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001012662	exon5	c.C876A	p.D292E	TTTTGACAGTCTC	.	44	16	60	0	.	.
OR2L2	26246	hgsc.bcm.edu	37	1	248202347	248202347	+	Missense_Mutation	SNP	C	C	T	rs143360089	bycluster	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	OR2L2,right_upper_lobe,carcinoma,0,2	OR2L2	NM_001004686	exon1	c.C778T	p.R260C	TATGTACGTCCAA	.	71	3	76	0	0.000	0
CTC1	80169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	8140773	8140773	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025099	exon5	c.A712T	p.K238X	TACTTTTCACCAG	.	29	13	66	0	.	.
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	112999663	112999663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018704	exon6	c.G1549T	p.G517W	CAACAAGGGCCAA	.	9	6	46	0	.	.
MAGEH1	28986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	55479371	55479371	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014061	exon1	c.T564G	p.S188S	ATGCTCTAAAGAC	.	15	14	30	0	.	.
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21694602	21694602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001135993	exon7	c.T1069A	p.Y357N	TGTCTGTATGAAA	.	37	16	59	0	.	.
RFWD3	55159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74670304	74670304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018124	exon8	c.T1366G	p.C456G	CATCACAGTATGC	.	37	19	52	0	.	.
COPA	1314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160263008	160263008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098398	exon27	c.C2798A	p.S933Y	AGCTGAGAGTTAT	.	103	66	89	0	.	.
MIR3680-1	100500917	hgsc.bcm.edu	37	11	63304427	63304427	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCAGGCTCCTGGC	.	29	15	50	0	.	.
RAPSN	5913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47464331	47464331	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032645	exon3	c.G567C	p.A189A	CTCTGCCGCCTTG	.	25	12	47	0	.	.
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140730180	140730180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018922	exon1	c.T353C	p.V118A	TGGTTGTTGTAAT	.	61	16	63	0	.	.
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56215774	56215774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032364	exon7	c.C2096T	p.P699L	TGGAAGGGCCTCC	.	38	18	47	0	.	.
ZNF821	55565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71901864	71901864	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001201556	exon4	c.C117T	p.G39G	CTGACTGCCAAGG	.	20	5	36	0	.	.
ZNF850	342892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37241073	37241073	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001193552	exon5	c.T869G	p.F290C	GAAGTAAAAGATT	.	63	22	105	0	.	.
ZNF354A	6940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178154001	178154001	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005649	exon3	c.G159C	p.L53L	CTTACCCAGTGAG	.	97	56	138	0	.	.
EIF4E2	9470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233422641	233422641	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004846	exon3	c.T183G	p.T61T	CTACACTTTTTGG	.	34	15	60	0	.	.
PDZD2	23037	hgsc.bcm.edu	37	5	31983419	31983419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_178140	exon2	c.A635G	p.K212R	CGAAAAAGGGGAA	.	100	4	82	0	.	.
IGF2BP2	10644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185542734	185542734	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001007225	exon1	c.T15G	p.L5L	GATGTAAAGCTTG	.	112	31	136	0	.	.
BEND3P3	650623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81444371	81444371	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGAGATCCCCAGC	.	33	14	38	0	.	.
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	57106936	57106936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133459	exon8	c.C888A	p.H296Q	CTTAATGTGGGAC	.	37	4	48	0	.	.
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133858086	133858086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016018	exon21	c.T2972C	p.L991S	CAAGATTGCCCCA	.	19	7	65	0	.	.
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58132575	58132575	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003435	exon3	c.A1088T	p.Q363L	CACACCAGAGGGT	.	40	20	75	0	.	.
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	125110056	125110056	+	Silent	SNP	T	T	G	rs372723456	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001039112	exon37	c.T4815G	p.T1605T	GAACACTGAAGAT	.	36	16	50	0	.	.
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	83816933	83816933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001220488	exon14	c.T2131G	p.S711A	ACAGATTCAGGGA	.	44	24	65	0	.	.
DGAT1	8694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145541987	145541987	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012079	exon7	c.T613G	p.F205V	TGAGGAAGAGGAT	.	19	6	30	0	.	.
RNU6-81	100873780	hgsc.bcm.edu;bcgsc.ca	37	2	132354664	132354664	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGCTGGAACATGG	.	198	91	357	0	.	.
GOLGA3	2802	hgsc.bcm.edu	37	12	133351864	133351864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GOLGA3,NS,carcinoma,0,1	GOLGA3	NM_005895	exon22	c.C4006A	p.Q1336K	CTTCCTGGGCCAT	.	43	2	48	0	.	0
AKR7L	246181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	19597309	19597309	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCATGTAGATAGA	.	27	10	47	0	.	.
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103299714	103299714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015902	exon37	c.A4904C	p.N1635T	CTAGCATTATCTT	.	26	10	26	0	.	.
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208200667	208200667	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025179	exon32	c.A5606T	p.E1869V	TCCTGCTCTAGGG	.	22	14	20	0	.	.
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4113218	4113218	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001257999	exon5	c.A609C	p.L203L	ATTCACTAGAGAC	.	20	12	44	0	.	.
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209974658	209974658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006147	exon3	c.A101C	p.K34T	AAGCGTTTAGAGT	.	183	27	147	0	.	.
POR	5447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	75615316	75615316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000941	exon14	c.T1745A	p.L582Q	AGGAGCTGGCGCA	.	9	4	26	0	.	.
DNAJC9	23234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75006528	75006528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015190	exon2	c.A239G	p.E80G	CCCTGCTCATCGT	.	48	14	67	0	.	.
FAH	2184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	80464579	80464579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000137	exon8	c.A695G	p.N232S	TTATGAACGACTG	.	24	11	43	0	.	.
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58491019	58491019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025027	exon7	c.C1029A	p.N343K	ATACTGGTTTTCT	.	46	16	101	0	.	.
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32166895	32166895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004557	exon24	c.C4343T	p.P1448L	AGCACAGGCCAGG	.	25	8	23	0	.	.
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36717867	36717867	+	Splice_Site	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002473	exon8	c.706-1G>T	.	TTTGCCCTAAGTA	.	37	14	69	0	.	.
ENTPD1-AS1	0	hgsc.bcm.edu	37	10	97751346	97751346	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TAACATGAAATAT	.	56	20	84	0	.	.
BMS1P4	729096	hgsc.bcm.edu	37	10	75488004	75488004	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTTGGTAAAAGCC	.	54	15	119	0	.	.
AMBP	259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116840382	116840382	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001633	exon1	c.T108C	p.N36N	AGAGATATTGAAG	.	19	9	36	0	.	.
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19316816	19316816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017925	exon12	c.G1786T	p.D596Y	GCTGCTGATTCAT	.	28	13	42	0	.	.
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70188309	70188309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152792	exon1	c.C512T	p.A171V	CCAAAGGCCTTCA	.	22	10	35	0	.	.
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52539138	52539138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000053	exon5	c.A1739T	p.H580L	ATGTTGTGGACAC	.	75	26	103	0	.	.
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	23544752	23544752	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003430	exon4	c.T1029G	p.I343M	AGTATGAATTCTC	.	33	14	67	0	.	.
PLGLA	285189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	107007431	107007431	+	RNA	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AAAATGGCATCAC	.	229	68	411	0	.	.
MLF1	4291	hgsc.bcm.edu	37	3	158315944	158315944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001195432	exon6	c.G448T	p.E150X	GGAGATGAACCGC	.	91	4	93	0	.	.
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62299800	62299800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001620	exon5	c.A2089T	p.I697F	TGGAGATCTTTGG	.	28	15	48	0	.	.
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	65425890	65425890	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000181	exon12	c.T1950C	p.F650F	TCAAGTAAACAGG	.	59	30	107	0	.	.
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54672203	54672203	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145303	exon4	c.A664T	p.T222S	GCTGGGTGGCAAA	.	39	13	68	0	.	.
ZSCAN32	54925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3434880	3434880	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017810	exon5	c.T177C	p.S59S	AAATTGAGAACTA	.	23	12	34	0	.	.
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	51644872	51644872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005333	exon13	c.C2351A	p.S784Y	CCTGGTCCAGAAT	.	28	27	36	0	.	.
TMEM184A	202915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1587391	1587391	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001097620	exon8	c.G999A	p.K333K	ATTCTCCTTCTTC	.	48	23	80	0	.	.
TCP11L1	55346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33094146	33094146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145541	exon10	c.G1454A	p.R485H	TTGCTCGCCTGGT	.	45	10	67	0	.	.
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37038201	37038201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145649	exon6	c.A1259C	p.K420T	TAGGGTTTTTCAC	.	20	9	69	0	.	.
WHSC1L1	54904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	38205356	38205356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017778	exon2	c.T334C	p.Y112H	AATGATAATAGTC	.	68	28	96	0	.	.
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	116356551	116356551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_144489	exon1	c.A352G	p.T118A	GGCCCTACAGAGA	.	14	6	17	0	.	.
DRG2	1819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18009784	18009784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001388	exon12	c.A992C	p.K331T	AGTTCAAGTACGC	.	20	6	41	0	.	.
INTS10	55174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	19700398	19700398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018142	exon14	c.T1679C	p.I560T	AGGCTATCATGCC	.	34	16	71	0	.	.
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64968449	64968449	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032776	exon10	c.A2980C	p.R994R	AATGCCTATGTAA	.	38	11	47	0	.	.
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57569260	57569260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001085461	exon7	c.C1012T	p.P338S	TGGGCTCCTTTGG	.	20	9	29	0	.	.
PROSER2-AS1	219731	hgsc.bcm.edu	37	10	11908455	11908455	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCCAACTTTGCTT	.	16	8	29	0	.	.
STPG1	90529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24718155	24718155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001199012	exon3	c.T85G	p.Y29D	TTGGATATGCAGC	.	39	14	104	0	.	.
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72378651	72378651	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138782	exon24	c.A2244T	p.G748G	AAATGGAGGTAAG	.	105	63	140	0	.	.
TOP2A	7153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38574040	38574040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001067	exon1	c.G4A	p.E2K	ACACTTCCATGGT	.	74	30	94	0	.	.
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35792667	35792667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003995	exon1	c.A262G	p.K88E	GACCTCAAGCTGT	.	41	12	68	0	.	.
ZNF410	57862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74387683	74387683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242924	exon10	c.G1055A	p.G352E	TTTCAGGAGAGAA	.	26	7	49	0	.	.
CDIPT	10423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29874145	29874145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006319	exon1	c.A34G	p.N12D	TGAGGTTGGGCAC	.	23	11	43	0	.	.
UTP14C	9724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52603174	52603174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021645	exon2	c.A234C	p.E78D	TTCTGAAGGATCA	.	60	27	87	0	.	.
TPCN1	53373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113664590	113664590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001143819	exon3	c.G149A	p.R50K	TTGAAAGGGAGCT	.	33	11	29	0	.	.
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4870320	4870320	+	Missense_Mutation	SNP	A	A	C	rs139571388	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001004758	exon1	c.T119G	p.I40S	ACAGCAATGAGGG	.	25	8	44	0	.	.
NUDT22	84304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63994325	63994325	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001128613	exon2	c.C201G	p.T67T	AGCCACCCTGGCG	.	58	23	69	0	.	.
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3774605	3774605	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005387	exon11	c.T1259G	p.F420C	CTTCCAAAAATAC	.	59	29	111	0	.	.
C19orf54	284325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	41248653	41248653	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198476	exon6	c.T741A	p.A247A	GGGCACAGCCCGA	.	26	15	12	0	.	.
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3067473	3067473	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003803	exon38	c.A4845T	p.S1615S	GTCGTCTGAGGCC	.	20	9	51	0	.	.
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	224345385	224345385	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015176	exon5	c.A1044G	p.R348R	GAAACGAAAAAAG	.	60	42	63	0	.	.
ASIC4	55515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220397059	220397059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182847	exon4	c.G1259T	p.W420L	AGCCCTGGGGCAA	.	12	6	34	0	.	.
CCDC83	220047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85630420	85630420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173556	exon12	c.T1202A	p.V401E	TGGGAGTGAAGCT	.	70	30	87	0	.	.
SNX29	92017	hgsc.bcm.edu;ucsc.edu	37	16	12220546	12220546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032167	exon12	c.G1459T	p.E487X	GAGGAGGAGAACA	.	31	4	59	0	.	.
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	75100419	75100419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000189	exon5	c.G512T	p.W171L	TCTCATGGACCAA	.	35	19	37	0	.	.
FSHB	2488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30255127	30255127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000510	exon3	c.A170G	p.Y57C	TGGTGTATAAGGA	.	48	12	70	0	.	.
BMP4	652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	54418732	54418732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BMP4,colon,carcinoma,0,2	BMP4	NM_130851	exon3	c.G209C	p.R70P	TGCGGGCGGCGGC	.	25	15	32	0	.	0
UBXN4	23190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136513166	136513166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014607	exon5	c.T413G	p.F138C	CGTCATTTGAACC	.	21	7	40	0	.	.
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	44845977	44845977	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173354	exon2	c.G82C	p.D28H	CGATGTCGTAAAA	.	44	31	82	0	.	.
NEK6	10783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	127113221	127113221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166171	exon11	c.A1039G	p.T347A	TCCAGCACCTGAG	.	23	12	29	0	.	.
LRRC37A6P	387646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27538087	27538087	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TAGTCTTCTCCAG	.	116	46	173	0	.	.
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49574864	49574864	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000324	exon8	c.A1137C	p.T379T	CTGACCTGTCATC	.	39	29	66	0	.	.
ARSE	415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2876371	2876371	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000047	exon3	c.G129C	p.L43L	CGCCATCAGAAGA	.	16	15	27	0	.	.
MIR302F	100302131	hgsc.bcm.edu	37	18	27878877	27878877	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGTCTTCTGTGTA	.	97	4	152	0	.	.
RBM10	8241	hgsc.bcm.edu	37	X	47030429	47030429	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001204468	exon4	c.T399C	p.D133D	CCAGGATTCCTAC	.	10	8	6	0	.	.
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147498034	147498034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001127699	exon23	c.A2147T	p.N716I	TGAAAAATGGAAG	.	70	12	79	0	.	.
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32678936	32678936	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BIRC6_ENST00000421745,NS,carcinoma,0,2	BIRC6_ENST00000421745	NM_016252	exon23	c.T4679G	p.L1560R	CTGGACTTTTGGA	.	63	25	115	0	.	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877732	82877732	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015885	exon5	c.A1793C	p.K598T	GATGGAAATCTGG	.	124	44	162	0	.	.
NRCAM	4897	hgsc.bcm.edu	37	7	107824716	107824716	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001037132	exon19	c.C2273A	p.S758X	GGCTCTGATCCCA	.	51	4	77	0	.	.
UBE2F	140739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238934042	238934042	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080678	exon6	c.A342G	p.E114E	AGGGGAAATATGT	.	27	13	39	0	.	.
SNX14	57231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	86235879	86235879	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153816	exon21	c.A2072C	p.Q691P	AGAAATTGTGTTT	.	69	19	57	0	.	.
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124826699	124826699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024628	exon10	c.A1331T	p.E444V	GGTCCCTCAGAGC	.	14	6	18	0	.	.
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	23544197	23544197	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003430	exon4	c.A1584G	p.R528R	GGATTGTCTAAAA	.	43	21	88	0	.	.
VTRNA2-1	100126299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	135416270	135416270	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACCGCTTGAGCTA	.	22	13	33	0	.	.
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133802005	133802005	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014987	exon8	c.C1071T	p.V357V	CCACTTGACCACG	.	20	11	39	0	.	.
PPP4R1	9989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9559465	9559465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001042388	exon14	c.T1980G	p.N660K	GTGCCAATTCTGT	.	29	15	33	0	.	.
SUPT20H	55578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	37583918	37583918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001014286	exon26	c.C2231T	p.A744V	GCCATAGCCATTT	.	39	21	76	0	.	.
B3GNT1	11041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66114615	66114615	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006876	exon1	c.G402T	p.L134L	CGTGGCCAGCTGC	.	16	8	22	0	.	.
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66203493	66203493	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016050	exon5	c.A564C	p.E188D	GGCAGCTTCTTCT	.	28	8	40	0	.	.
PTPMT1	114971	hgsc.bcm.edu	37	11	47591273	47591273	+	Nonsense_Mutation	SNP	G	G	T	rs200800213	bycluster;alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PTPMT1,NS,carcinoma,0,1	PTPMT1	NM_175732	exon3	c.G277T	p.E93X	GGAGTCGAGCAGC	.	33	3	48	0	.	0
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209969704	209969704	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006147	exon4	c.T368G	p.I123S	TTAATGATCGAGC	.	28	6	36	0	.	.
RBM4	5936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66410945	66410945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002896	exon3	c.C437T	p.S146F	AGTTGTCCACCAG	.	33	14	43	0	.	.
COL4A3	1285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228118346	228118346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000091	exon13	c.A757G	p.N253D	CCAGATAACAGAA	.	35	14	46	0	.	.
GATAD1	57798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92078113	92078113	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021167	exon2	c.A297T	p.K99N	CACTAAATACAAA	.	37	14	74	0	.	.
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45855787	45855787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ERCC2_ENST00000391945,bladder,carcinoma,0,1	ERCC2_ENST00000391945	NM_000400	exon21	c.G2023T	p.G675C	TGAGGCCGTAGTC	.	43	21	44	0	.	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48443439	48443439	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152701	exon39	c.G12033A	p.R4011R	CTCCCGGCATAGC	.	36	15	50	0	.	.
TIMMDC1	51300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	119217752	119217752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016589	exon1	c.C172T	p.L58F	GACCGCCTCCGGG	.	46	16	46	0	.	.
SYS1	90196	hgsc.bcm.edu;ucsc.edu	37	20	43996521	43996521	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGACCAGGCACCC	.	15	10	36	0	.	.
TPTE2P5	100616668	hgsc.bcm.edu	37	13	41438002	41438002	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCACACTTCTGAA	.	14	5	26	0	.	.
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	141669627	141669627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005607	exon32	c.A3163C	p.N1055H	GTAAGTTTTTGGC	.	21	9	45	0	.	.
CSMD2	114784	hgsc.bcm.edu	37	1	34285407	34285407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CSMD2_ENST00000373381,NS,malignant_melanoma,0,4	CSMD2_ENST00000373381	NM_052896	exon9	c.G1111A	p.E371K	AGCCCTCGTTGCA	.	43	2	60	0	.	0
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148899805	148899805	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000096	exon14	c.T2541G	p.T847T	TGTTGGAGTAACT	.	57	35	82	0	.	.
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	160262761	160262761	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014247	exon14	c.T2097G	p.D699E	TTCAGATGAAGAT	.	15	9	39	0	.	.
SLC47A2	146802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19606450	19606450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152908	exon12	c.T1157G	p.I386R	ATGCTTATCAGGG	.	27	10	68	0	.	.
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6943064	6943064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001004684	exon1	c.C832T	p.P278S	ATGCGACCAAACT	.	41	17	57	0	.	.
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242433442	242433442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014808	exon27	c.G3067A	p.G1023R	ATCCAGGGGGCCA	.	49	19	57	0	.	.
EGR4	1961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73518868	73518868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001965	exon2	c.G1487A	p.R496H	TCGGAGCGCGCAA	.	12	6	22	0	.	.
C11orf52	91894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111796729	111796729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080659	exon4	c.C178A	p.Q60K	CAGCAGCAAGGGT	.	26	6	53	0	.	.
BIRC3	330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102198793	102198793	+	Missense_Mutation	SNP	T	T	G	rs373892386		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001165	exon4	c.T964G	p.L322V	GAGTACTTGATAA	.	42	14	52	0	.	.
IKZF5	64376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124758099	124758099	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001271840	exon3	c.T43A	p.F15I	CCTGAAAATCTTT	.	60	22	78	0	.	.
MALAT1	378938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	65266585	65266585	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CAGATAAGTTTTT	.	38	17	54	0	.	.
SUCO	51430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	172558420	172558420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014283	exon18	c.C2179G	p.Q727E	CATTCTCAAACTC	.	44	28	34	0	.	.
OR2A2	442361	hgsc.bcm.edu	37	7	143807373	143807373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	OR2A2,colon,carcinoma,0,1	OR2A2	NM_001005480	exon1	c.G698A	p.R233H	AGGGCCGCATAAA	.	31	2	59	0	.	0
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90049514	90049514	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015350	exon5	c.T1305C	p.N435N	AGACAATGTCTTT	.	13	11	38	0	.	.
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	31158612	31158612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030632	exon1	c.A17G	p.K6R	AGAGGAAGAAGAA	.	110	41	176	0	.	.
ZNF542	147947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56888579	56888579	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GAAACCTTACAAA	.	40	22	34	0	.	.
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200587439	200587439	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014875	exon2	c.T413G	p.I138R	GAATCTATTTCAG	.	67	43	72	0	.	.
TBCEL	219899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120957511	120957511	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001130047	exon8	c.T981C	p.Y327Y	TAAATATGGGAAG	.	36	5	55	0	.	.
HOXA-AS3	100133311	hgsc.bcm.edu	37	7	27183301	27183301	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ATTTATGATGAAT	.	65	4	98	0	.	.
ELAVL1	1994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8056616	8056616	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001419	exon2	c.T84A	p.P28P	GTTCTGAGGGAGG	.	52	21	67	0	.	.
BMP6	654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7880449	7880449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001718	exon7	c.A1415G	p.Y472C	CCGAGTATGTCCC	.	54	30	72	0	.	.
DHX40	79665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57643997	57643997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024612	exon2	c.G122A	p.G41E	AGAAAGGATGCAC	.	58	18	103	0	.	.
APBB3	10307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139939978	139939978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006051	exon11	c.C1165G	p.R389G	TCTGACGGCCCAG	.	40	5	67	0	.	.
ZNF699	374879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9407095	9407095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198535	exon5	c.C985T	p.H329Y	CACTGTGAATTCT	.	33	17	59	0	.	.
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201531474	201531474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001159	exon32	c.A3608T	p.Q1203L	TAGGCCAGGTACG	.	64	27	85	0	.	.
XPNPEP1	7511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111643856	111643856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001167604	exon9	c.T799C	p.S267P	CGTAGGAGAAAAA	.	36	15	40	0	.	.
CYP4F22	126410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15651396	15651396	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173483	exon8	c.C807T	p.D269D	CTGTGACATGGTG	.	31	11	28	0	.	.
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	56015562	56015562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052898	exon1	c.A514T	p.S172C	GATTTCAGCACCG	.	23	11	22	0	.	.
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	157505453	157505453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020732	exon13	c.A3434G	p.Y1145C	AGCAGTATATTCA	.	80	25	81	0	.	.
KCNU1	157855	hgsc.bcm.edu	37	8	36675277	36675277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001031836	exon10	c.G1105T	p.E369X	CTGGGAGAGTAAG	.	86	5	119	0	.	.
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200376559	200376559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012482	exon2	c.T2275G	p.L759V	GTGTCAACTGCTG	.	74	19	63	0	.	.
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123200253	123200253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001042749	exon23	c.A2232C	p.Q744H	TTGGCAACTTGCT	.	32	30	77	0	.	.
ZNF345	25850	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	37368144	37368144	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242476	exon4	c.A412C	p.R138R	CATCAGAGAATTC	.	35	12	74	0	.	.
BCYRN1	618	hgsc.bcm.edu	37	X	70787308	70787308	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AAAAGGCAGATCT	.	49	38	84	0	.	.
SRP54	6729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35468824	35468824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003136	exon3	c.A139G	p.K47E	AATATTAAACTAG	.	37	20	57	0	.	.
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	10327609	10327609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183416	exon6	c.A601G	p.K201E	GGGAACAAAGCCA	.	19	12	63	0	.	.
ZNF670-ZNF695	0	hgsc.bcm.edu	37	1	247130468	247130468	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACTCCCGACCTCA	.	14	12	14	0	.	.
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	243663078	243663078	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006642	exon18	c.T2133A	p.S711S	ACAATCTGATTGC	.	64	28	56	0	.	.
BSCL2	26580	hgsc.bcm.edu	37	11	62460156	62460156	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BSCL2,NS,carcinoma,0,1	BSCL2	NM_001122955	exon5	c.C744T	p.Y248Y	GTCTGCGTAGAGT	.	20	2	36	0	.	0
PAFAH1B2	5049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117030734	117030734	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001184747	exon3	c.T166G	p.Y56D	CAGCAATATGAGG	.	46	15	69	0	.	.
LOXL2	4017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	23198669	23198669	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002318	exon4	c.A579C	p.S193S	GTAGGTTGAGAGG	.	41	16	41	0	.	.
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45681856	45681856	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006953	exon2	c.T87G	p.T29T	TGTGACTTTCGCC	.	21	5	37	0	.	.
NPLOC4	55666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79563165	79563165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017921	exon11	c.A1097C	p.K366T	ACAAACTTGGATC	.	40	18	80	0	.	.
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73738739	73738739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005731	exon25	c.G2859C	p.E953D	GCCTGAGGATGAC	.	28	14	49	0	.	.
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40049390	40049390	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001096	exon15	c.C1497T	p.A499A	CACAATGGCCTTG	.	27	15	39	0	.	.
ZNF583	147949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56935139	56935139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001159861	exon5	c.A1112G	p.Q371R	TACATCAGAGAAT	.	33	11	67	0	.	.
ANKRD20A9P	284232	hgsc.bcm.edu;ucsc.edu	37	13	19426389	19426389	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGGATATCACTGT	.	26	10	52	0	.	.
QPRT	23475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	29706151	29706151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014298	exon2	c.C180G	p.F60L	TTTCTTCGATGCC	.	30	13	51	0	.	.
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	74229629	74229629	+	Missense_Mutation	SNP	T	T	G	rs11550839	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001402	exon2	c.A121C	p.K41Q	CAAATTTTTCAAT	.	96	62	130	0	.	.
ANKRD17	26057	hgsc.bcm.edu	37	4	73979583	73979583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ANKRD17,NS,lymphoid_neoplasm,0,1	ANKRD17	NM_032217	exon24	c.C4327A	p.Q1443K	TGGCTTGTACTAT	.	27	2	74	0	.	0
WNT3A	89780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228194881	228194881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_033131	exon1	c.G52C	p.G18R	GCTCTGGGCAGCT	.	54	33	41	0	.	.
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85687060	85687060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014991	exon32	c.T5091G	p.N1697K	AGACTGATTACTT	.	22	16	51	0	.	.
HRH2	3274	hgsc.bcm.edu	37	5	175111128	175111128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	HRH2_ENST00000377291,middle_lobe,carcinoma,0,3	HRH2_ENST00000377291	NM_001131055	exon2	c.G892T	p.G298W	CGCACCGGGTACC	.	36	2	28	0	.	0
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184039802	184039802	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001194946	exon11	c.A1451T	p.E484V	AGAGTGAGAAAGG	.	79	26	111	0	.	.
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	169820752	169820752	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003742	exon18	c.T2142G	p.V714V	ATCTACAACAGCT	.	50	24	58	0	.	.
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113140706	113140706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138729	exon5	c.A509G	p.Y170C	CAAGTGTATCTTT	.	38	28	98	0	.	.
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48315409	48315409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152701	exon17	c.G6146T	p.S2049I	AAAAAAGTGAAAC	.	55	12	66	0	.	.
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	17273832	17273832	+	Silent	SNP	T	T	C	rs369987628		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017738	exon6	c.T951C	p.L317L	TGAACTTATCCAG	.	36	10	78	0	.	.
CTIF	9811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46385774	46385774	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001142397	exon13	c.G1647C	p.L549L	GCTCCTGGCCAGC	.	15	6	21	0	.	.
ZNF500	26048	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	4815793	4815793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021646	exon2	c.G187C	p.G63R	GGGGCCCAGCCAC	.	22	9	48	0	.	.
LRRC16B	90668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24532678	24532678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138360	exon31	c.G2915A	p.R972K	AACTAAGGCATCA	.	19	14	22	0	.	.
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219603258	219603258	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014640	exon3	c.T859G	p.L287V	ATCGCCTTGTCTA	.	19	10	36	0	.	.
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90079724	90079724	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032119	exon67	c.A13503G	p.L4501L	CCACCTAGTGAGC	.	62	37	91	0	.	.
TVP23B	51030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18702239	18702239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016078	exon5	c.T445A	p.F149I	TTCTCCTTCAGAG	.	72	39	125	0	.	.
CHAMP1	283489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	115090640	115090640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001164144	exon3	c.A1323C	p.K441N	CAGAAAACCCTCA	.	33	16	59	0	.	.
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	86591498	86591498	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152890	exon3	c.G521C	p.S174T	GAGACACTTTGGT	.	12	12	33	0	.	.
SEMA3D	223117	hgsc.bcm.edu	37	7	84651769	84651769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	SEMA3D,NS,adenocarcinoma,0,1	SEMA3D	NM_152754	exon11	c.A1352G	p.Q451R	ACTATCTGTGTCA	.	49	2	62	0	.	0
PCGF5	84333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	93021177	93021177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001256549	exon7	c.A569G	p.Y190C	GTTCTTATGAGGT	.	157	63	224	0	.	.
C17orf70	80233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	79514062	79514062	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025161	exon5	c.T2046G	p.T682T	CCGACAAGTTTCC	.	12	4	19	0	.	.
LIX1L	128077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145498117	145498117	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153713	exon5	c.T708G	p.V236V	GACAGTTTTTCAA	.	82	12	80	0	.	.
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141162287	141162287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001080412	exon8	c.A1057T	p.S353C	TTTGACAGCAGCA	.	35	17	33	0	.	.
TPP1	1200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6637270	6637270	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000391	exon9	c.A1111C	p.R371R	GGTGTCTTCCAGA	.	40	17	63	0	.	.
CDC14A	8556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100983832	100983832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003672	exon16	c.A1781G	p.Y594C	TTCATTACTAAGG	.	33	22	72	0	.	.
ADH6	130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100130084	100130084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000672	exon6	c.T569C	p.V190A	GGAGTCACCTAAA	.	9	6	28	0	.	.
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	24118774	24118774	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242338	exon2	c.C283T	p.Q95X	CAGGTTGTTTCAA	.	38	15	54	0	.	.
SMC4	10051	hgsc.bcm.edu;bcgsc.ca	37	3	160150976	160150976	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005496	exon22	c.C3693A	p.S1231S	TGTGTCCATTGTT	.	87	4	92	0	.	.
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17722483	17722483	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005291	exon6	c.T1002C	p.P334P	GTTGATAGGCAGC	.	18	5	37	0	.	.
TNFRSF10D	8793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	23003411	23003411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003840	exon5	c.T506C	p.V169A	TTACTGACCTTGA	.	42	14	53	0	.	.
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	40059833	40059833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021096	exon19	c.A3584C	p.E1195A	AGATCGAGGCCGG	.	15	6	17	0	.	.
C6orf132	647024	hgsc.bcm.edu	37	6	42074397	42074397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001164446	exon4	c.C1253A	p.P418H	GCACAGGGCAAAG	.	20	4	9	0	.	.
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194169221	194169221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024524	exon11	c.C1115T	p.T372I	TCTCCAGTGTAGA	.	79	24	56	0	.	.
TIMM23	100287932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	51592574	51592574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006327	exon7	c.T560G	p.L187R	CTGGTAAGTGTTA	.	33	15	65	0	.	.
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	84930673	84930673	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001370	exon50	c.A8216C	p.E2739A	ATCAAGAAAGTGC	.	17	7	35	0	.	.
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29130501	29130501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_145862	exon2	c.A209G	p.E70G	TAGAGTTCCTGAG	.	17	12	52	0	.	.
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	19432012	19432012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_144633	exon6	c.C851A	p.S284Y	GCAAGTCTGGCCA	.	24	18	49	0	.	.
IL6ST	3572	hgsc.bcm.edu	37	5	55250698	55250698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002184	exon11	c.G1390A	p.A464T	AGGGTGCTTTATC	.	80	4	77	0	.	.
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178506225	178506225	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014594	exon5	c.A792C	p.R264S	TCAGAGAATTCAT	.	55	12	71	0	.	.
CYP2F1	1572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41633960	41633960	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000774	exon10	c.T1449A	p.P483P	GCGGCCTTTCCAG	.	49	23	81	0	.	.
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42363325	42363325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_178034	exon17	c.G1872T	p.W624C	ACCTGCCCAGGTG	.	39	19	56	0	.	.
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241451322	241451322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016552	exon10	c.A1975G	p.R659G	CCGTCCTGCCCCC	.	27	13	50	0	.	.
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	64416712	64416712	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015153	exon12	c.A3657C	p.A1219A	TGTGGCAAAATTT	.	72	19	94	0	.	.
TAS2R9	50835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	10962389	10962389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_023917	exon1	c.A286C	p.S96R	AGAGACTTGAATT	.	54	19	66	0	.	.
HNRNPU	3192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245019773	245019773	+	Missense_Mutation	SNP	A	A	T	rs111577008	bycluster	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_031844	exon10	c.T1898A	p.V633D	TTGAGGACCGCAT	.	107	49	56	0	.	.
PAOX	196743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	135193724	135193724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_207128	exon2	c.T403C	p.Y135H	CTGTTCTACGGCC	.	43	21	77	0	.	.
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26816634	26816634	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002223	exon15	c.A1697T	p.D566V	CGGTAATCCTGCT	.	46	20	100	0	.	.
NLRP8	126205	hgsc.bcm.edu;bcgsc.ca	37	19	56467321	56467321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_176811	exon3	c.G1897T	p.V633F	AAAGTTGTCTTGA	.	54	4	94	0	.	.
RTP4	64108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	187088734	187088734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022147	exon2	c.A314T	p.E105V	TGCCTGAGTTCTC	.	25	4	47	0	.	.
PSG5	5673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43690496	43690496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002781	exon1	c.C62T	p.T21I	TCACCTGTGAGCA	.	70	26	97	0	.	.
UNC93A	54346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167717430	167717430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018974	exon5	c.A649G	p.M217V	GTCCTGATGATAG	.	88	28	69	0	.	.
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	7476074	7476074	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	COL28A1,NS,carcinoma,0,1	COL28A1	NM_001037763	exon23	c.G1812C	p.G604G	AGGTATCCCAGGT	.	69	29	90	0	.	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877755	82877755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015885	exon5	c.A1816C	p.S606R	AATAAAAGGTATG	.	130	62	166	0	.	.
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159208198	159208198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003379	exon3	c.T134G	p.F45C	AGGCCAAAGTACC	.	33	20	43	0	.	.
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118365076	118365076	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001197104	exon17	c.A5252T	p.K1751I	AAATTAAAAAAGC	.	30	18	61	0	.	.
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	13190124	13190124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003829	exon16	c.T2143G	p.L715V	AATCTAAAATGCT	.	36	16	51	0	.	.
ABCA17P	650655	hgsc.bcm.edu	37	16	2416852	2416852	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTGTGGGCATCCT	.	17	9	26	0	.	.
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52441997	52441997	+	Missense_Mutation	SNP	A	A	C	rs113802540	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004656	exon5	c.T352G	p.F118V	TGGTGAAGTCCTT	.	14	12	44	0	.	.
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236175345	236175345	+	Splice_Site	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002508	exon13	c.2405-2A>G	.	TACATCTGTAAAA	.	31	16	21	0	.	.
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8467132	8467132	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004218	exon3	c.T399C	p.A133A	GCGGGCTGTGCCC	.	17	5	26	0	.	.
C15orf52	388115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40628778	40628778	+	Missense_Mutation	SNP	C	C	T	rs370895955		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	C15orf52,right_lower_lobe,carcinoma,0,1	C15orf52	NM_207380	exon9	c.G1016A	p.R339Q	TACCTTCGGGCCC	.	42	18	56	0	.	0
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136597516	136597516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014739	exon5	c.T1147C	p.Y383H	TGAAGTAATCTAG	.	149	31	210	0	.	.
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56578658	56578658	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_139067	exon5	c.G462A	p.G154G	TAATTTCCCTAGT	.	63	22	92	0	.	.
OGFOD1	55239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56487225	56487225	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018233	exon2	c.T205A	p.F69I	CCAAACTTCATCC	.	81	36	118	0	.	.
SLC25A16	8034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70243272	70243272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152707	exon9	c.C916T	p.L306F	AATTAAGAGATAA	.	52	20	69	0	.	.
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	136059372	136059372	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005862	exon32	c.T3633C	p.D1211D	ATTCATATCTTCT	.	53	14	64	0	.	.
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17050634	17050634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015134	exon11	c.G1208T	p.W403L	TTTAGTGGAAGAA	.	45	21	69	0	.	.
NDUFV1	4723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67378874	67378874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007103	exon7	c.G914C	p.G305A	CCCCAGGGGGTGT	.	32	15	52	0	.	.
CNN3	1266	hgsc.bcm.edu	37	1	95368727	95368727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001839	exon3	c.A197G	p.Q66R	CCTGGCTGTAGCT	.	22	10	121	0	.	.
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	194152559	194152559	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024524	exon21	c.A2308T	p.K770X	TCACTTTATCCTG	.	55	30	56	0	.	.
GJA10	84694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90604202	90604202	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032602	exon1	c.C15G	p.N5K	CTGGAACTTATTG	.	61	18	77	0	.	.
TEPP	374739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58019375	58019375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_199046	exon6	c.G758A	p.C253Y	CCTGCTGCCCGCC	.	46	16	76	0	.	.
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191859926	191859926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007315	exon10	c.A805G	p.S269G	GCAGACTCTCCGC	.	35	11	67	0	.	.
TTC12	54970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113230696	113230696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017868	exon18	c.C1580A	p.S527Y	GCCTGTCTTTACT	.	29	18	24	0	.	.
ATF5	22809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50436094	50436094	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012068	exon4	c.C594T	p.A198A	CCTGGCCCCCTAC	.	35	24	60	0	.	.
DOC2GP	390213	hgsc.bcm.edu	37	11	67383064	67383064	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCAGTGGGGGCCT	.	25	10	46	0	.	.
ACO1	48	hgsc.bcm.edu	37	9	32429463	32429463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002197	exon13	c.G1531T	p.G511W	AACAGTGGGCCTT	.	27	4	40	0	.	.
UBN2	254048	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138968747	138968747	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173569	exon15	c.G3096A	p.S1032S	CTTCTCGATGGCT	.	15	6	21	0	.	.
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	54763893	54763893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_176895	exon3	c.T298C	p.Y100H	CTTTGTAAATAGT	.	48	28	55	0	.	.
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155447890	155447890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018489	exon3	c.T4771G	p.F1591V	GAGTGAATCCTCC	.	71	12	77	0	.	.
GOLGA8I	283796	hgsc.bcm.edu	37	15	23258877	23258877	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCCTTTTCTATCC	.	13	4	13	0	.	.
NXPH4	11247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57619423	57619423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007224	exon2	c.T820G	p.F274V	AAGCCCTTCAAAG	.	12	7	27	0	.	.
CDR2L	30850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72997553	72997553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014603	exon3	c.G310C	p.E104Q	GTGCTGGAGAGTA	.	22	11	57	0	.	.
STARD5	80765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81614763	81614763	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181900	exon3	c.C268G	p.Q90E	TGCTTTGGATAAT	.	29	17	63	0	.	.
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	122931947	122931947	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006597	exon2	c.T86G	p.I29S	TTGGCAATTATCT	.	21	13	33	0	.	.
MSRB2	22921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	23393156	23393156	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MSRB2,colon,carcinoma,0,1	MSRB2	NM_012228	exon2	c.G202C	p.E68Q	ACAAGAGAAAAGG	.	39	15	62	0	.	0
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	182756844	182756844	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020166	exon12	c.A1347T	p.T449T	CAGTTTTGTCAAT	.	58	15	47	0	.	.
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	148676088	148676088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001616	exon7	c.G889A	p.A297T	ACCATGGCTAGAG	.	35	25	87	0	.	.
TMEM38A	79041	hgsc.bcm.edu	37	19	16790827	16790827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TMEM38A,colon,carcinoma,-1,1	TMEM38A	NM_024074	exon2	c.G157T	p.A53S	CCCATCGCGTCCT	.	21	2	20	0	.	-1
DDX19A	55308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70404165	70404165	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018332	exon10	c.A1060C	p.K354Q	CTCTCAAAAGAAG	.	30	17	81	0	.	.
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	156745289	156745289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	NOM1,bladder,carcinoma,0,1	NOM1	NM_138400	exon2	c.A1109G	p.N370S	TACTTAACAGGTG	.	71	31	114	0	.	0
KIAA0125	9834	hgsc.bcm.edu;bcgsc.ca	37	14	106391361	106391361	+	RNA	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTCTCCTGGGCAA	.	44	13	72	0	.	.
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103383698	103383698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001146197	exon4	c.C19349A	p.T6450N	GAAATAGTCCCTT	.	46	14	89	0	.	.
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12291295	12291295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002336	exon16	c.A3571G	p.I1191V	CATGAATGTCACT	.	34	18	60	0	.	.
BTBD8	284697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92573559	92573559	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183242	exon4	c.662+1G>T	.	TCACAGGTAAATA	.	28	20	88	0	.	.
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73427372	73427372	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002869	exon5	c.G325C	p.D109H	CATCATCAATCCA	.	52	26	81	0	.	.
CCDC74A	90557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	132285743	132285743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001258304	exon1	c.T200C	p.M67T	CGGAGATGCTGGC	.	70	17	95	0	.	.
NEFM	4741	hgsc.bcm.edu	37	8	24775376	24775376	+	Missense_Mutation	SNP	T	T	C	rs201305028		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	NEFM,lower_third,carcinoma,-2,1	NEFM	NM_005382	exon3	c.T2008C	p.S670P	CCTGTGTCAAAAT	.	97	4	127	0	.	-2
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45254588	45254588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005178	exon2	c.C361T	p.L121F	CACCCCCTTTCTG	.	23	17	32	0	.	.
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu	37	7	142749878	142749878	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001001667	exon1	c.G441A	p.W147X	TGCCTGGGCAGCT	.	34	15	44	0	.	.
SYNJ2BP-COX16	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70839843	70839843	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001202547	exon4	c.G303A	p.Q101Q	CTGCACCTGTAAC	.	23	10	42	0	.	.
WBP2	23558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	73847681	73847681	+	Nonsense_Mutation	SNP	T	T	A	rs149300980	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012478	exon2	c.A136T	p.K46X	CTTTCTTGGTCCC	.	40	16	58	0	.	.
MRPL2	51069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43022170	43022170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015950	exon7	c.A760G	p.K254E	CCCGTTTGTTATG	.	27	5	42	0	.	.
CYP20A1	57404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204111487	204111487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_177538	exon3	c.T132G	p.N44K	TGGTAATCTTCCA	.	29	13	79	0	.	.
ZNF204P	7754	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	27326564	27326564	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGGGCTGAACAGA	.	55	12	62	0	.	.
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152129068	152129068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001122965	exon3	c.C507A	p.H169Q	ACTGTGGTGGGAA	.	68	9	91	0	.	.
FLJ33360	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	6337401	6337401	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGTGCTCCAAGAA	.	26	17	13	0	.	.
ARMC6	93436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19162649	19162649	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001199196	exon5	c.T498C	p.T166T	GCTGACTGATGGA	.	18	9	21	0	.	.
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48131422	48131422	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098531	exon28	c.T2700A	p.A900A	GACATAAGCCCAG	.	43	16	50	0	.	.
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	10402698	10402698	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005885	exon14	c.G1176A	p.W392X	TGGTTGGTGGCTG	.	121	18	93	0	.	.
C10orf62	414157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99350107	99350107	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001009997	exon1	c.T453C	p.A151A	CATAGCTTACCAG	.	35	15	50	0	.	.
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30686364	30686364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001024847	exon3	c.A295G	p.T99A	AGCATCACCTCCA	.	12	11	65	0	.	.
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7533491	7533491	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001040	exon1	c.A1C	p.M1L	CTGATTATGGAGA	.	18	7	27	0	.	.
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33256352	33256352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001103184	exon5	c.A2425C	p.K809Q	GAGGTTTTTTCTT	.	68	28	105	0	.	.
ALOX12B	242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7976095	7976095	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001139	exon15	c.T2100C	p.S700S	CTAAATAGAAATG	.	41	20	37	0	.	.
ISX	91464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	35481519	35481519	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001008494	exon4	c.C571T	p.Q191X	CAAGATCAGCTGG	.	29	15	30	0	.	.
MSH5-SAPCD1	100532732	hgsc.bcm.edu	37	6	31711843	31711843	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CGGCACAAGTGCT	.	30	17	46	0	.	.
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103299709	103299709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015902	exon37	c.A4909G	p.S1637G	GCCCACTAGCATT	.	27	10	26	0	.	.
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101705835	101705835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014503	exon21	c.T2333C	p.M778T	ATGATATGACAGA	.	37	22	54	0	.	.
ZBTB21	49854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	43412457	43412457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098402	exon3	c.G1748C	p.R583T	TGAAACCTCTTGT	.	10	9	47	0	.	.
ATXN7L3B	552889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	74932028	74932028	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001136262	exon1	c.T136G	p.F46V	GGCTACTTCTACC	.	39	14	68	0	.	.
LMBR1	64327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	156589175	156589175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022458	exon5	c.C331T	p.L111F	AAGCAAGATTCCA	.	66	27	108	0	.	.
SENP5	205564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196626893	196626893	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152699	exon4	c.A1718C	p.D573A	TGGACGACCTGGC	.	42	12	54	0	.	.
FUS	2521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31201095	31201095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004960	exon10	c.C1046G	p.A349G	CTAAAGCAGCTAT	.	39	17	62	0	.	.
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57719585	57719585	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_170776	exon11	c.C1287T	p.Y429Y	CATGTACGCCCTC	.	33	18	70	0	.	.
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209801446	209801446	+	Missense_Mutation	SNP	C	C	G	rs145170416		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000228	exon11	c.G1222C	p.E408Q	AGCGCTCTCCCTG	.	58	44	58	0	0.000	.
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64966945	64966945	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032776	exon10	c.A4484C	p.K1495T	CTACTTTTATACT	.	38	7	79	0	.	.
ELN	2006	hgsc.bcm.edu	37	7	73474788	73474788	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001081754	exon25	c.T1719C	p.V573V	TGGTGTTCCTGGA	.	16	4	31	0	.	.
COL20A1	57642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61926534	61926534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020882	exon2	c.A75C	p.Q25H	AGAGCAAGTTCAA	.	68	23	96	0	.	.
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62100224	62100224	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006430	exon10	c.T1038A	p.A346A	AATATGAGCAACT	.	56	24	111	0	.	.
BTNL9	153579	hgsc.bcm.edu;broad.mit.edu	37	5	180480244	180480244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152547	exon5	c.G781C	p.A261P	TTCGTCGCGACCC	.	8	4	8	0	.	.
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	77672823	77672823	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015057	exon56	c.T8466G	p.P2822P	TGGCTTAGGAGAT	.	26	12	43	0	.	.
MEF2D	4209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156450644	156450644	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005920	exon4	c.G378A	p.G126G	GAAGAGCCCGTCG	.	55	35	44	0	.	.
STAP2	55620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4327373	4327373	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001013841	exon7	c.G600A	p.V200V	CCGGACCACGTGC	.	16	10	36	0	.	.
MRPL44	65080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	224828637	224828637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MRPL44,colon,carcinoma,0,1	MRPL44	NM_022915	exon3	c.T813G	p.F271L	GTATTTTGTTGGC	.	66	29	117	0	.	0
NDUFB10	4716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2011155	2011155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004548	exon2	c.A132C	p.E44D	TGCAGAATTTATA	.	60	20	69	0	.	.
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90255340	90255340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004938	exon8	c.A757G	p.R253G	TTCATAAGAAGAC	.	38	17	60	0	.	.
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32667184	32667184	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016252	exon18	c.T3996C	p.V1332V	GCTTGTTAATACT	.	47	20	81	0	.	.
ZNF204P	7754	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	27327423	27327423	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCACACTCACTGC	.	53	14	65	0	.	.
DENND1A	57706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	126414328	126414328	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024820	exon9	c.A582T	p.E194D	CCGGCGTTCGTAC	.	21	7	38	0	.	.
ANKRD13C	81573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70779446	70779446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030816	exon5	c.T691A	p.W231R	AATCCCAGTGAAG	.	55	24	99	0	.	.
ADAMTS5	11096	hgsc.bcm.edu	37	21	28296852	28296852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ADAMTS5,NS,carcinoma,0,1	ADAMTS5	NM_007038	exon8	c.C2313A	p.F771L	GGCAGTGAATCTA	.	21	2	97	0	.	0
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53568653	53568653	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001083617	exon15	c.C3736T	p.L1246L	CTTTTAGGGCAGT	.	55	26	55	0	.	.
TMCO1	54499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165728808	165728808	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_019026	exon3	c.G315A	p.K105K	TGTTTCCTTCTTC	.	93	60	79	0	.	.
SOAT1	6646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	179312001	179312001	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003101	exon9	c.T864C	p.T288T	AGGCACTGTTCCA	.	73	54	66	0	.	.
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	45124486	45124486	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001146334	exon2	c.C1293A	p.A431A	CCCCTTGGCCCCA	.	13	5	26	0	.	.
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118983266	118983266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014807	exon9	c.C1159T	p.L387F	TGCCCACTCACCC	.	13	7	33	0	.	.
CEP350	9857	hgsc.bcm.edu	37	1	180023000	180023000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014810	exon24	c.T5105C	p.L1702P	CACTCCTGCGTCT	.	98	4	79	0	.	.
ATAD3C	219293	hgsc.bcm.edu	37	1	1398007	1398007	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ATAD3C,colon,carcinoma,0,1	ATAD3C	NM_001039211	exon11	c.C1008T	p.Y336Y	TGACTACGGGAGG	.	48	2	88	0	.	0
POTEF	728378	hgsc.bcm.edu	37	2	130832686	130832686	+	Missense_Mutation	SNP	G	G	A	rs376041561	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	POTEF,NS,carcinoma,0,1	POTEF	NM_001099771	exon17	c.C2359T	p.H787Y	TGTGGTGCCAGAT	.	52	3	77	0	.	0
ZCCHC8	55596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122973962	122973962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017612	exon5	c.G472A	p.A158T	TAATGGCACAGGA	.	70	29	130	0	.	.
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	54442593	54442593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001170402	exon3	c.T218G	p.I73S	GTGGTAATGGGGC	.	65	23	89	0	.	.
HMGCS2	3158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120302536	120302536	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005518	exon3	c.A636T	p.G212G	CACAGCTCCGGCC	.	14	6	25	0	.	.
IL12B	3593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	158749517	158749517	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002187	exon4	c.C367G	p.P123A	TTTTGGGTTCTGG	.	65	29	60	0	.	.
TMEM128	85013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	4242110	4242110	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032927	exon3	c.T264C	p.Y88Y	GACATCATATTCT	.	79	37	85	0	.	.
SNHG7	84973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	139620610	139620610	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGAGTGTAGAAAT	.	25	13	46	0	.	.
ATF4	468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39917554	39917554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001675	exon1	c.A104C	p.D35A	TCTTAGATGATTA	.	35	10	65	0	.	.
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138407783	138407783	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006219	exon14	c.A2070C	p.Q690H	ACCAAATTGTACT	.	41	15	45	0	.	.
USP2	9099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119243852	119243852	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004205	exon2	c.C339T	p.F113F	ATAAGGGAATCCG	.	18	8	36	0	.	.
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	131256904	131256904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153435	exon17	c.A2060C	p.K687T	AGCGGAAGAACAT	.	14	6	17	0	.	.
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139815133	139815133	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152888	exon11	c.G1539A	p.K513K	CTCTCCCTTAGGT	.	28	13	38	0	.	.
ACSL5	51703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	114168254	114168254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016234	exon6	c.A675C	p.E225D	ACCAGAAGCCATC	.	57	23	93	0	.	.
SMAD5-AS1	9597	hgsc.bcm.edu;ucsc.edu	37	5	135469456	135469456	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTTTGGAGCCTAA	.	44	19	58	0	.	.
GALNT4	8693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	89917207	89917207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003774	exon1	c.A1120G	p.N374D	GGAAATTGGGGCG	.	49	14	78	0	.	.
TBR1	10716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162273323	162273323	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006593	exon1	c.C402T	p.H134H	GGCGCACCCCGCC	.	27	15	39	0	.	.
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101544402	101544402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000392	exon2	c.C71A	p.P24Q	ACCTGCCACTTTG	.	28	13	40	0	.	.
SREK1IP1	285672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	64020374	64020374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173829	exon5	c.A305T	p.E102V	GTGTCCTCTTCAG	.	102	6	122	0	.	.
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38689097	38689097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015073	exon19	c.G4909T	p.G1637W	GACCCTGGGCTGA	.	21	12	22	0	.	.
PRICKLE4	29964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41751913	41751913	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013397	exon4	c.C177G	p.N59K	CACCAACCAAGCC	.	53	27	86	0	.	.
TAF2	6873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120754808	120754808	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003184	exon25	c.C3303G	p.P1101P	CCACTGGGGTTTT	.	93	18	151	0	.	.
SF3A3	10946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38444662	38444662	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006802	exon10	c.C825G	p.G275G	TTACCCGCCACAT	.	63	28	104	0	.	.
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45583442	45583442	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017922	exon12	c.A1814C	p.K605T	CTTTAAAAAGGAA	.	94	33	147	0	.	.
CSNK1G2-AS1	255193	hgsc.bcm.edu	37	19	1953519	1953519	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTGGGAAAATTGC	.	27	14	49	0	.	.
FUZ	80199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50314691	50314691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025129	exon5	c.G421T	p.D141Y	CCGAGTCCCCCAG	.	26	13	52	0	.	.
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	29220580	29220580	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024857	exon21	c.T4709A	p.L1570X	AAACATTGGTAAT	.	26	11	47	0	.	.
ZFAND6	54469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	80429825	80429825	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242913	exon8	c.T482G	p.F161C	CAGGGTTTGAATG	.	43	18	57	0	.	.
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75968341	75968341	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001897	exon10	c.G6519A	p.V2173V	CAGGGCCACGCTG	.	36	18	50	0	.	.
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18379580	18379580	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015241	exon8	c.T1116G	p.T372T	CATACAAGTGAAG	.	11	5	26	0	.	.
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	68686686	68686686	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_178011	exon2	c.T12C	p.N4N	TTTCAATGTAATT	.	36	19	51	0	.	.
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	95236433	95236433	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012081	exon7	c.T918C	p.P306P	ACATACAGGAGAT	.	66	20	57	0	.	.
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu	37	11	71939417	71939417	+	Missense_Mutation	SNP	G	G	A	rs142516692		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	INPPL1,NS,carcinoma,0,1	INPPL1	NM_001567	exon3	c.G272A	p.R91H	TGCGCCGCTTCCA	.	29	3	35	0	0.000	0
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	35544140	35544140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080872	exon7	c.A997T	p.T333S	GAGTGCACAGCAC	.	26	13	60	0	.	.
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6101927	6101927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001199860	exon3	c.T114G	p.F38L	CCAGTTTTACAGG	.	35	24	158	0	.	.
STX3	6809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	59554567	59554567	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004177	exon3	c.A172T	p.K58X	GCTAAGAAACTCT	.	29	6	64	0	.	.
PCF11	51585	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	82877699	82877699	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PCF11_ENST00000298281,colon,carcinoma,0,2	PCF11_ENST00000298281	NM_015885	exon5	c.A1760C	p.N587T	TAGAAAACTGGCA	.	77	31	126	0	.	0
MYRIP	25924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	40231505	40231505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015460	exon10	c.G1216A	p.A406T	AGTGAGGCCTTGA	.	9	7	32	0	.	.
NVL	4931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	224477340	224477340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002533	exon13	c.T1421C	p.L474P	GCCATGAGATCAG	.	67	17	66	0	.	.
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3094261	3094261	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003803	exon26	c.A3771C	p.K1257N	CTGGCCTTTCTCC	.	132	56	233	0	.	.
TTR	7276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29172884	29172884	+	Missense_Mutation	SNP	T	T	G	rs121918094	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000371	exon2	c.T95G	p.L32R	GTCCTCTGATGGT	.	39	14	43	0	.	.
NOXO1	124056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2030477	2030477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_172168	exon4	c.T307C	p.Y103H	GAGAATAGGTTTC	.	25	16	54	0	.	.
ZNF69	7620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12014751	12014751	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021915	exon3	c.T180C	p.Y60Y	TGAATATGAGTAC	.	105	38	196	0	.	.
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131864315	131864315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000755	exon6	c.C652A	p.H218N	CACTGTGGTACAC	.	16	7	43	0	.	.
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140724331	140724331	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032011	exon1	c.A731T	p.Q244L	TTACTCAGCCTGA	.	51	11	60	0	.	.
TNK2	10188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195609127	195609127	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001010938	exon6	c.A871T	p.T291S	TCAGAGTCCCCAG	.	48	16	70	0	.	.
RIT1	6016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155880452	155880452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	RIT1,NS,malignant_melanoma,0,1	RIT1	NM_001256821	exon2	c.A152T	p.K51M	CCACTCTTCCCTA	.	58	36	58	0	.	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877714	82877714	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015885	exon5	c.A1775C	p.K592T	GTTCCAAGTCTGC	.	107	48	137	0	.	.
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67522582	67522582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181523	exon2	c.G79T	p.G27C	CACTTGGGTGACA	.	112	67	148	0	.	.
ATP5S	27109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50789296	50789296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015684	exon3	c.G220T	p.G74W	CGCTGTGGGGCCA	.	15	5	45	0	.	.
HOXA6	3203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27187127	27187127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024014	exon1	c.C242G	p.S81C	TTATCAGAATAGA	.	32	13	52	0	.	.
SCFD1	23256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31097418	31097418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016106	exon2	c.C65G	p.A22G	CAGTGGCTTTGAA	.	56	21	101	0	.	.
ODF2	4957	hgsc.bcm.edu;broad.mit.edu	37	9	131256884	131256884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ODF2_ENST00000372814,NS,carcinoma,0,2	ODF2_ENST00000372814	NM_153435	exon17	c.A2040C	p.Q680H	AGACCAACTGCAG	.	13	4	16	0	.	0
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15855658	15855658	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015291	exon2	c.C58T	p.L20L	CTGATCCTGCAAA	.	81	34	106	0	.	.
DPY19L2P2	349152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	102920615	102920615	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGGAGCTGGGTCA	.	22	9	50	0	.	.
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	141415702	141415702	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_031466	exon6	c.A1276T	p.K426X	CCTCTTTATACTT	.	38	16	67	0	.	.
RPRD1B	58490	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	36694651	36694651	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021215	exon6	c.A824C	p.K275T	AGAAAAAACTAGA	.	30	10	48	0	.	.
NDN	4692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	23931983	23931983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002487	exon1	c.G382A	p.V128I	CGATGACATCTTT	.	26	13	39	0	.	.
ANKRD42	338699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82935942	82935942	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182603	exon6	c.T548G	p.L183R	AATTCCTAGTCAG	.	81	34	112	0	.	.
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	98240741	98240741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001270	exon2	c.A115G	p.S39G	CACTACTGCTTCC	.	23	10	40	0	.	.
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10785962	10785962	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014633	exon11	c.T1392G	p.L464L	TAGACTTGGAAAC	.	42	17	62	0	.	.
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152129066	152129066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.,15	.	NM_001122965	exon3	c.A509G	p.H170R	TGACTGTGGTGGG	.	70	10	94	0	.	123
SLC16A10	117247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	111498823	111498823	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018593	exon3	c.A897C	p.G299G	AGTTGGAATACCA	.	13	6	11	0	.	.
CNBD2	140894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34568459	34568459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080834	exon4	c.T322A	p.C108S	GCCGTCTGTAACA	.	45	22	50	0	.	.
FAM208B	54906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5803315	5803315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017782	exon19	c.T7055C	p.I2352T	ATATCATTGAATT	.	38	18	76	0	.	.
VWA8	23078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42357983	42357983	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015058	exon19	c.A2225C	p.N742T	TGTGCATTATAGA	.	54	14	83	0	.	.
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122243775	122243775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015048	exon3	c.A308G	p.K103R	CTCCGAAGCAGGT	.	28	12	53	0	.	.
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40823409	40823409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024927	exon8	c.C1244T	p.A415V	GCACAGGCACCAG	.	57	22	113	0	.	.
BARHL2	343472	hgsc.bcm.edu	37	1	91182194	91182194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BARHL2,colon,carcinoma,0,1	BARHL2	NM_020063	exon1	c.G559C	p.E187Q	CCTGCTCGAGCTT	.	12	2	44	0	.	0
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7840511	7840511	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001037144	exon7	c.T858G	p.S286S	CCTTTCTGAGGCC	.	60	31	74	0	.	.
ZCCHC4	29063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25363483	25363483	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024936	exon9	c.A1014C	p.V338V	CTAGGTAGATTAT	.	77	33	95	0	.	.
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184040641	184040641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001194946	exon14	c.A1849C	p.K617Q	GAGAAAAAACGTT	.	54	15	67	0	.	.
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169820688	169820688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024947	exon13	c.A2503T	p.S835C	AACGACTAAGTGC	.	63	27	70	0	.	.
SNORD116-11	100033423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	25321133	25321133	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGTGAAAACTTTA	.	52	27	97	0	.	.
ZBTB16	7704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	114121244	114121244	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006006	exon7	c.A1989T	p.I663I	GAGGATAGAGAAG	.	17	10	32	0	.	.
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19166611	19166611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TAS1R2,caecum,carcinoma,0,1	TAS1R2	NM_152232	exon6	c.G2002A	p.A668T	TGTAGGCGCGTGG	.	42	19	35	0	.	0
C9orf152	401546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112963453	112963453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001012993	exon2	c.G495T	p.M165I	CTGAGTCATCTGA	.	30	13	53	0	.	.
FLJ26850	0	hgsc.bcm.edu	37	19	50563715	50563715	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GATAGTGACATGC	.	27	9	36	0	.	.
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125760961	125760961	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012197	exon10	c.C1290G	p.V430V	AAAAGTCCGCGTT	.	110	39	200	0	.	.
WBP4	11193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41636805	41636805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007187	exon2	c.A28C	p.K10Q	CAGCCAAAGAAAT	.	59	25	113	0	.	.
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27005649	27005649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003170	exon10	c.A1203C	p.E401D	GGATGAAAAGGTA	.	41	15	82	0	.	.
NSUN5P1	155400	hgsc.bcm.edu	37	7	75045150	75045150	+	RNA	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGGCTTGGGACCC	.	45	16	48	0	.	.
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1263842	1263842	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002458	exon31	c.C5732G	p.T1911S	AGCCGACCACAAC	.	53	24	78	0	.	.
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18865012	18865012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015092	exon31	c.A4661C	p.N1554T	GTGAAGTTCTGTT	.	52	15	94	0	.	.
CCDC168	643677	hgsc.bcm.edu	37	13	103400137	103400137	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001146197	exon4	c.G2910A	p.E970E	ACTATTCTCCAAA	.	77	4	119	0	.	.
LIMD1	8994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45637209	45637209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014240	exon1	c.T838G	p.L280V	CCAAACTTGGAGA	.	22	16	77	0	.	.
APMAP	57136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	24954309	24954309	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020531	exon4	c.C393T	p.T131T	GGCAATGGTCTCT	.	61	21	69	0	.	.
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153296461	153296461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	FBXO5,mouth,carcinoma,0,1	FBXO5	NM_012177	exon2	c.A399G	p.I133M	TGCTTCTATTTCA	.	40	11	60	0	.	0
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236175334	236175334	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002508	exon12	c.A2414T	p.E805V	TGGCATTCATCTA	.	34	18	21	0	.	.
RAB27B	5874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	52556641	52556641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004163	exon6	c.C654A	p.C218X	TATCTGCTAGACT	.	36	11	68	0	.	.
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877696	82877696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PCF11_ENST00000298281,bladder,carcinoma,+1,1	PCF11_ENST00000298281	NM_015885	exon5	c.A1757G	p.E586G	ATGTAGAAAACTG	.	77	30	124	0	.	+1
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	56015559	56015559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052898	exon1	c.T511G	p.F171V	CACGATTTCAGCA	.	23	9	22	0	.	.
RNU6-71	100873774	hgsc.bcm.edu	37	6	56406143	56406143	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGAACTAACATCC	.	63	16	70	0	.	.
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42644579	42644579	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015255	exon40	c.T4446G	p.A1482A	TCTTGCTTTGTAT	.	50	31	71	0	.	.
FST	10468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	52779381	52779381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013409	exon3	c.A325G	p.N109D	CGAATGAACAAGA	.	79	22	84	0	.	.
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2052709	2052709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_178167	exon6	c.T490C	p.Y164H	GCGAGTACCACTT	.	18	12	10	0	.	.
RNF138P1	379013	hgsc.bcm.edu;ucsc.edu	37	5	54826126	54826126	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTAGGATCTCCCC	.	55	9	72	0	.	.
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2977638	2977638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032415	exon8	c.T1046C	p.L349P	CACTTGAGCTCCA	.	14	4	33	0	.	.
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1280229	1280229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002458	exon44	c.G16651T	p.D5551Y	TCTGGGGACACCC	.	57	20	82	0	.	.
STK32C	282974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	134039116	134039116	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_173575	exon6	c.T687G	p.H229Q	GTGTGCATGTCCT	.	17	7	32	0	.	.
ACSM5	54988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20451133	20451133	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ACSM5,NS,carcinoma,0,1	ACSM5	NM_017888	exon13	c.A1548C	p.A516A	AAAGGCATTTATA	.	72	22	98	0	.	0
C18orf63	644041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	72020689	72020689	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001174123	exon12	c.A1187T	p.K396M	GTAGAAAGAAATC	.	36	20	58	0	.	.
PRDM4	11108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108145645	108145645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012406	exon5	c.A673G	p.I225V	TTGGGATTTGGGA	.	23	6	44	0	.	.
FBXO6	26270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11733376	11733376	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018438	exon5	c.A552C	p.K184N	ACTCAAAGTGCAG	.	17	11	43	0	.	.
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29295281	29295281	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001029883	exon1	c.A1847T	p.Q616L	TCCCTCTGGACCC	.	14	7	18	0	.	.
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	101100758	101100758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006828	exon18	c.C2831G	p.P944R	AATGTTGGGTCAA	.	89	5	128	0	.	.
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220072980	220072980	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138802	exon5	c.T437G	p.L146R	ACAGACTTGCTGC	.	19	10	43	0	.	.
ESPN	83715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6511978	6511978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_031475	exon10	c.T2147G	p.L716R	CGCTGCTCAATGG	.	23	18	78	0	.	.
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112168774	112168774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002829	exon18	c.C1760T	p.S587L	TCCCGTGAGTGGG	.	31	13	51	0	.	.
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64565493	64565493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182914	exon63	c.T12335A	p.L4112Q	CTTACCTGGCAGC	.	44	19	42	0	.	.
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50720113	50720113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012401	exon21	c.A3404T	p.E1135V	CAGCGCTCGGCAC	.	24	12	34	0	.	.
ERC2	26059	hgsc.bcm.edu	37	3	56026205	56026205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ERC2_ENST00000288221,caecum,carcinoma,0,2	ERC2_ENST00000288221	NM_015576	exon11	c.C2135A	p.A712E	TAAGACGCCTCTT	.	20	2	60	0	.	0
OCRL	4952	hgsc.bcm.edu;broad.mit.edu	37	X	128724136	128724136	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000276	exon24	c.T2595G	p.T865T	CTTCACTAGTCTT	.	9	8	13	0	.	.
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17510965	17510965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001001924	exon11	c.A3257G	p.D1086G	AGTAAATCTTCAA	.	59	25	96	0	.	.
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	34074072	34074072	+	Silent	SNP	C	C	T	rs370335951	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_203364	exon2	c.C105T	p.A35A	GGCCGCCGCGCCG	.	32	15	42	0	.	.
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37687154	37687154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016507	exon14	c.C4058T	p.T1353I	TTGACACTGATGA	.	29	12	60	0	.	.
AOX2P	344454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201642727	201642727	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCTGTACTCTCGG	.	35	15	50	0	.	.
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27493528	27493528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_078471	exon2	c.G431A	p.R144H	CGGCTACGCTGGG	.	35	16	37	0	.	.
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	212118230	212118230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015434	exon19	c.G2497A	p.G833R	CCACTCCCTCTAC	.	46	28	64	0	.	.
TAF1D	79101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93469419	93469419	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024116	exon6	c.T745G	p.L249V	CTTCTAAGTATAC	.	64	25	105	0	.	.
UIMC1	51720	hgsc.bcm.edu	37	5	176396234	176396234	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	UIMC1,NS,carcinoma,0,1	UIMC1	NM_016290	exon6	c.C522T	p.N174N	AGCCTCGTTTCCC	.	71	3	81	0	.	0
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74525044	74525044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145667	exon8	c.C1304A	p.S435Y	CTCAGAGAAAAGT	.	28	10	46	0	.	.
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1490288	1490288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017573	exon1	c.C58T	p.R20C	GGGGGCGGACAAG	.	66	28	89	0	.	.
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4442934	4442934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005483	exon15	c.C2783T	p.P928L	AAGCCCCGTGTGG	.	43	12	94	0	.	.
RIMBP3	85376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20458094	20458094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015672	exon1	c.G3208C	p.G1070R	TAGTTCCCCAATA	.	177	31	283	0	.	.
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	73751914	73751914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000213	exon35	c.A4691G	p.Y1564C	TGGAGTACCAGCT	.	23	10	20	0	.	.
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148894184	148894184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000096	exon18	c.A3034G	p.S1012G	CAGAACTATAAAC	.	49	17	59	0	.	.
PFKM	5213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48501972	48501972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166686	exon3	c.A200C	p.K67T	TTTTCAAAACTGG	.	44	17	61	0	.	.
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74189546	74189546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_194278	exon10	c.A2579C	p.Q860P	TTGGTCTGGATCT	.	50	20	64	0	.	.
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	129566387	129566387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133448	exon7	c.A1840T	p.M614L	CCTGCATGAAGTC	.	26	8	45	0	.	.
MIR1256	100302155	hgsc.bcm.edu	37	X	103165052	103165052	+	RNA	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCCAGTAAGTTTC	.	5	5	15	0	.	.
POLE	5426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	133202837	133202837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006231	exon46	c.G6397T	p.V2133L	CATCCACCAGGCG	.	10	4	20	0	.	.
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118486011	118486011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005509	exon18	c.A4489C	p.S1497R	CATTCTAGTTTAC	.	45	21	51	0	.	.
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	59952332	59952332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020748	exon19	c.C2548A	p.Q850K	CATTCTGAGTATA	.	52	20	58	0	.	.
RPS24	6229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	79814760	79814760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001142285	exon5	c.G862T	p.G288C	GGTCTGGGCCACT	.	24	12	23	0	.	.
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3067471	3067471	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003803	exon38	c.A4847T	p.D1616V	TGGTCGTCTGAGG	.	22	10	48	0	.	.
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	9857878	9857878	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GRIN2A,NS,carcinoma,0,2	GRIN2A	NM_000833	exon14	c.G3523T	p.E1175X	CCTCTTCATTATG	.	41	16	55	0	.	0
IMP3	55272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75932170	75932170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018285	exon1	c.G340A	p.V114M	GGAGCACGGTGGG	.	23	10	37	0	.	.
PTEN	5728	hgsc.bcm.edu;bcgsc.ca	37	10	89720807	89720807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PTEN,caecum,carcinoma,-1,1	PTEN	NM_000314	exon8	c.T958G	p.L320V	CTTACTTTAACAA	.	60	19	114	0	.	-1
NUB1	51667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151072981	151072981	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001243351	exon13	c.T1515A	p.P505P	CAATCCTGAAACC	.	87	35	87	0	.	.
UBFD1	56061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23578342	23578342	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_019116	exon6	c.A771C	p.K257N	CATAAAAAATGTG	.	47	16	56	0	.	.
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24103602	24103602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242338	exon7	c.A808G	p.I270V	CTTCTATATCTCC	.	42	16	67	0	.	.
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	10327615	10327615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183416	exon6	c.A607T	p.R203W	AAAGCCAGGTATG	.	20	12	54	0	.	.
SLC10A7	84068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	147363937	147363937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032128	exon5	c.T433G	p.L145V	TTACCAAAAAACT	.	69	54	235	0	.	.
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64505656	64505656	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020762	exon17	c.T2034C	p.H678H	GGCACATGTGAAT	.	48	28	69	0	.	.
ZNF345	25850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37368149	37368149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001242476	exon4	c.T417G	p.I139M	GAGAATTCATACT	.	37	14	73	0	.	.
ANKRD36BP2	645784	hgsc.bcm.edu	37	2	89072724	89072724	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTTAAGGCATAAG	.	14	4	12	0	.	.
RHPN1-AS1	78998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144450431	144450431	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTTGGAAGCAGGA	.	88	31	151	0	.	.
FKBP8	23770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18648519	18648519	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012181	exon6	c.G837A	p.L279L	GGCCGCCAGGTTG	.	48	21	67	0	.	.
SYT1	6857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	79685872	79685872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001135805	exon7	c.C436T	p.L146F	GGAAAACTTCAGT	.	59	20	84	0	.	.
ZNF525	170958	hgsc.bcm.edu;ucsc.edu	37	19	53885337	53885337	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTGGCAAGATCTT	.	23	6	61	0	.	.
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196822115	196822115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018897	exon19	c.T2948C	p.V983A	GCTTGGACTTTGA	.	33	17	55	0	.	.
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	249211007	249211007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_170725	exon3	c.T224C	p.L75P	GTGTGCTGCATGC	.	38	22	26	0	.	.
CASKIN1	57524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2233907	2233907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020764	exon15	c.C1452A	p.F484L	CAGCTGGAACGCG	.	51	21	78	0	.	.
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128471295	128471295	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018383	exon18	c.A3170C	p.D1057A	CTGTGATCAGGGG	.	55	25	73	0	.	.
WWP2	11060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69874107	69874107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001270454	exon5	c.T419A	p.F140Y	CAATTTTCCTGGA	.	34	16	49	0	.	.
TTC39A	22996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	51754561	51754561	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001144832	exon17	c.T1572C	p.L524L	CTCCATAAGCAGC	.	21	10	54	0	.	.
ZNF74	7625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	20760929	20760929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003426	exon5	c.G1606A	p.A536T	GGCAGAGCCTTCA	.	32	16	74	0	.	.
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72831573	72831573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006885	exon9	c.A5008G	p.S1670G	CAGCACTGCTTGG	.	22	10	38	0	.	.
IREB2	3658	hgsc.bcm.edu	37	15	78770699	78770699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	IREB2,rectum,carcinoma,0,3	IREB2	NM_004136	exon10	c.G1256T	p.R419L	TGTTTCGAAATGA	.	38	2	61	0	.	0
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	82188691	82188691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007005	exon2	c.C133G	p.Q45E	CAGGCTCAATACC	.	41	14	51	0	.	.
PPIEL	728448	hgsc.bcm.edu	37	1	40019783	40019783	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AAGGCAAGTAAAG	.	6	4	7	0	.	.
IMPA1	3612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	82588479	82588479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001144878	exon6	c.T515A	p.V172E	TTATTTACAGCAA	.	178	70	275	0	.	.
HNRNPA1P10	664709	hgsc.bcm.edu	37	12	54678037	54678037	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTACTTTTCAGGT	.	66	35	108	0	.	.
C1orf140	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	221507263	221507263	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCTGCAGTATCCA	.	81	26	53	0	.	.
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195509900	195509900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018406	exon2	c.G8551A	p.V2851I	CGGTGACAGGAAG	.	97	38	149	0	.	.
WDR61	80349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78582401	78582401	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025234	exon6	c.T360C	p.Y120Y	GGCCAGATACTGG	.	49	25	76	0	.	.
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36565701	36565701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005202	exon1	c.A143G	p.Q48R	CCTTTCTGCATGG	.	55	17	70	0	.	.
SLX4	84464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3656611	3656611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032444	exon3	c.G624T	p.L208F	TAGGACCAATTGT	.	43	23	45	0	.	.
ODF2	4957	hgsc.bcm.edu	37	9	131256844	131256844	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ODF2_ENST00000372814,NS,carcinoma,0,2	ODF2_ENST00000372814	NM_153435	exon17	c.T2000G	p.L667R	ACATCCTGAAGAT	.	7	2	19	0	.	0
PTGER2	5732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	52781389	52781389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000956	exon1	c.A123G	p.I41M	CCTCATAGCACTG	.	41	21	73	0	.	.
SLMO2	51012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57611616	57611616	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	SLMO2,NS,carcinoma,0,1	SLMO2	NM_016045	exon5	c.A375G	p.T125T	TTCTTGTGTCAAA	.	44	23	75	0	.	0
MED28	80306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	17621579	17621579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_025205	exon2	c.A215G	p.E72G	AGGAAGAAATTCG	.	76	7	83	0	.	.
IRS1	3667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227661428	227661428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005544	exon1	c.G2027A	p.G676E	CCACCTCCAATGT	.	24	13	25	0	.	.
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43601837	43601837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020630	exon5	c.C881T	p.A294V	TGGTGGCCACGCT	.	20	10	47	0	.	.
TRAM1	23471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	71495450	71495450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014294	exon10	c.G1000T	p.V334L	TCTTCACAGCTGG	.	24	11	62	0	.	.
ASCC2	84164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30186459	30186459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032204	exon19	c.G2101T	p.G701W	CTCACCCTTTCTT	.	17	10	42	0	.	.
PSD3	23362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	18662106	18662106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015310	exon6	c.A1836C	p.E612D	GCTAAATTCGTTG	.	66	23	103	0	.	.
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	58470491	58470491	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014258	exon20	c.1665+1G>A	.	AAGTTACTTTGTC	.	41	15	51	0	.	.
NLRP5	126206	hgsc.bcm.edu	37	19	56527149	56527149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	NLRP5_ENST00000390649,colon,carcinoma,0,1	NLRP5_ENST00000390649	NM_153447	exon4	c.G550A	p.E184K	GCTGCAGAGACAA	.	41	2	49	0	.	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	73569791	73569791	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022124	exon59	c.C8937T	p.L2979L	CCTGCTCTCCAAC	.	13	6	10	0	.	.
ARMC4	55130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	28196701	28196701	+	Missense_Mutation	SNP	A	A	G	rs150213638		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018076	exon17	c.T2501C	p.I834T	CGATCAATTATCC	.	59	20	71	0	0.000	.
MROH7	374977	hgsc.bcm.edu	37	1	55168304	55168304	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001039464	exon21	c.G3450A	p.V1150V	GTGTGTGAAGACC	.	50	4	71	0	.	.
ZNF670-ZNF695	0	hgsc.bcm.edu	37	1	247130470	247130470	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCCCGACCTCAGG	.	14	12	14	0	.	.
ZC3H15	55854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	187351163	187351163	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018471	exon1	c.A54G	p.K18K	GCAAAAAAAGAAG	.	52	23	59	0	.	.
FRAS1	80144	hgsc.bcm.edu	37	4	79204119	79204119	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	FRAS1_ENST00000325942,NS,carcinoma,0,3	FRAS1_ENST00000325942	NM_001166133	exon12	c.C1253A	p.S418X	GCACATCAGGTGG	.	19	3	46	0	.	0
B2M	567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45007705	45007705	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004048	exon2	c.A152C	p.H51P	GGTTTCATCCATC	.	55	18	109	0	.	.
RFC2	5982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73661064	73661064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181471	exon5	c.A362C	p.K121T	AACATTTTAATTT	.	56	29	66	0	.	.
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	171394504	171394504	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001130081	exon18	c.2001+1G>A	.	CAAGTACTTTTGT	.	30	16	61	0	.	.
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90449961	90449961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014611	exon32	c.A4585C	p.K1529Q	CCTTTTTTCCAAA	.	100	56	86	0	.	.
VWA5B1	127731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20656759	20656759	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001039500	exon10	c.C1341T	p.V447V	GTGGGTCATCAGG	.	22	10	32	0	.	.
ROMO1	140823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34287659	34287659	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_080748	exon2	c.G105A	p.A35A	CGGGGCGCTCTTC	.	58	25	83	0	.	.
MRPL35	51318	hgsc.bcm.edu	37	2	86437740	86437740	+	Silent	SNP	C	C	T	rs1052060		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MRPL35,NS,carcinoma,0,1	MRPL35	NM_016622	exon4	c.C516T	p.Y172Y	CTGGTACGTTGAT	.	42	2	69	0	.	0
PXMP4	11264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32295759	32295759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007238	exon4	c.T392C	p.L131S	CGTGACAACAGGT	.	36	16	39	0	.	.
GZF1	64412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23345474	23345474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022482	exon1	c.A454G	p.S152G	GAGGTGAGCAGTG	.	17	5	39	0	.	.
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61523963	61523963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014709	exon30	c.T4226G	p.M1409R	AATGCCATCAACA	.	41	15	73	0	.	.
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	48580290	48580290	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001184832	exon22	c.A2680T	p.K894X	AACCAGAAACTGG	.	56	24	78	0	.	.
PKD1L2	114780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81248669	81248669	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001076780	exon3	c.T594A	p.R198R	TGAAGGACGCCCG	.	32	13	51	0	.	.
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99247744	99247744	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000777	exon12	c.A1365G	p.L455L	TCTGATTAGAGCA	.	103	10	152	0	.	.
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19373053	19373053	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003325	exon12	c.T1320C	p.D440D	CCTGATATCTTCA	.	20	10	26	0	.	.
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160511104	160511104	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000876	exon44	c.A6624C	p.G2208G	AGTTGGAACCTCT	.	68	18	80	0	.	.
PRG4	10216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186277684	186277684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005807	exon7	c.A2833G	p.T945A	ACTACAACAGAAA	.	94	54	76	0	.	.
SBF2	81846	hgsc.bcm.edu	37	11	9801363	9801363	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCATCAGAATAAT	.	18	4	15	0	.	.
FOXA2	3170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	22563329	22563329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021784	exon2	c.A551C	p.K184T	AGCATCTTGTTGG	.	54	21	50	0	.	.
KIAA1462	57608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	30315724	30315724	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020848	exon3	c.C3353G	p.A1118G	GTGCAGGCACTTG	.	20	11	39	0	.	.
USP32P1	162632	hgsc.bcm.edu	37	17	16705681	16705681	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AAGATGGCAGACA	.	113	43	176	0	.	.
SLC2A2	6514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	170715825	170715825	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000340	exon11	c.T1442G	p.F481C	TTAAAAAATGTGA	.	47	22	40	0	.	.
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52732339	52732339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004799	exon6	c.A2291G	p.E764G	CCTGGGAGAACAT	.	60	18	61	0	.	.
HSD17B14	51171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49339067	49339067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016246	exon2	c.A122C	p.K41T	CCATCCTTGTCGC	.	22	9	36	0	.	.
DPY19L2P2	349152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	102920595	102920595	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGTTTCTTCATAA	.	32	10	63	0	.	.
AGFG1	3267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228401415	228401415	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001135187	exon10	c.T1352G	p.F451C	CTCCATTTGGAGG	.	38	15	51	0	.	.
DNAJB13	374407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73679407	73679407	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153614	exon6	c.A624G	p.P208P	CATCCCAGCAGAC	.	48	12	43	0	.	.
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107006479	107006479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001624	exon16	c.C4610T	p.S1537F	TACGCTCTGTTCA	.	40	10	45	0	.	.
REL	5966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61149151	61149151	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002908	exon11	c.G1341C	p.L447L	ATTCCTGAGAATA	.	35	17	53	0	.	.
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64966863	64966863	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032776	exon10	c.A4566T	p.V1522V	ACAGATTACAGTG	.	29	17	89	0	.	.
ZFAND2A	90637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1197813	1197813	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182491	exon2	c.A36C	p.E12D	AGTCTTTTCTGAA	.	21	7	49	0	.	.
C15orf38-AP3S2	100526783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90431760	90431760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001199058	exon7	c.T869C	p.L290P	TGGATGAGGTCCA	.	20	12	56	0	.	.
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu	37	15	42168834	42168834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016642	exon20	c.A3758G	p.Q1253R	TGCAGCTGCTCTC	.	19	11	14	0	.	.
DNAJB6	10049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157208727	157208727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_058246	exon10	c.A916G	p.K306E	GGTGGCAAGAGGA	.	32	13	79	0	.	.
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	17273829	17273829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017738	exon6	c.A948C	p.E316D	GACTGAACTTATC	.	35	10	78	0	.	.
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24777048	24777048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014430	exon3	c.C17A	p.A6D	TTCAGAGCTGAGA	.	35	10	54	0	.	.
DDB2	1643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47256385	47256385	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000107	exon6	c.A780G	p.T260T	GGCCACAGCCTCC	.	33	16	35	0	.	.
MAP3K2	10746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128087578	128087578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006609	exon6	c.A385C	p.N129H	CTAAATTAGTAGC	.	72	32	135	0	.	.
GPR21	2844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125797792	125797792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005294	exon2	c.A947G	p.K316R	GACTAAAGCGCCT	.	32	13	39	0	.	.
VNN1	8876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133034964	133034964	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004666	exon2	c.210+1G>A	.	ATGGTACCTGATC	.	35	13	58	0	.	.
MARVELD3	91862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71668439	71668439	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052858	exon3	c.C939G	p.I313M	GCTCATCGCGGGG	.	18	7	34	0	.	.
CARNS1	57571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67186527	67186527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166222	exon5	c.A665G	p.Q222R	TGGCCCAGCAGGG	.	29	12	52	0	.	.
LINC00472	79940	hgsc.bcm.edu	37	6	72128283	72128283	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CACTAAAGCATGA	.	46	9	44	0	.	.
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	123965153	123965153	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014943	exon3	c.A1403C	p.E468A	ATGCCGAGGTTTA	.	16	5	16	0	.	.
HTR7P1	93164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	13157460	13157460	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGAATTTCGACAT	.	10	4	16	0	.	.
KIAA0319L	79932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36020083	36020083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024874	exon2	c.A10G	p.R4G	CCAGCCTCTTCTC	.	47	21	76	0	.	.
KIR3DX1	90011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55054772	55054772	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACAGGAGATCATA	.	25	13	35	0	.	.
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31437700	31437700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014676	exon14	c.A2144G	p.D715G	TAAAGGTCACTGC	.	65	34	69	0	.	.
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	13176276	13176276	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003829	exon20	c.T2790C	p.T930T	ATTTATAGTAAAG	.	44	22	81	0	.	.
GTF3C1	2975	hgsc.bcm.edu	37	16	27549552	27549552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GTF3C1,right_upper_lobe,carcinoma,+1,1	GTF3C1	NM_001520	exon3	c.G557A	p.R186Q	CTGGACCGGCCTA	.	42	2	63	0	.	+1
USP12	219333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	27669906	27669906	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182488	exon4	c.A405C	p.T135T	AGCAATTGTATTT	.	123	47	250	0	.	.
BCAP29	55973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107258885	107258885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001008405	exon8	c.C882A	p.F294L	TAAGTTCAGAAAA	.	59	29	116	0	.	.
SEPT7P2	641977	hgsc.bcm.edu;bcgsc.ca	37	7	45805412	45805412	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ATTCACCTAAAAG	.	120	48	224	0	.	.
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69370532	69370532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032382	exon2	c.A461T	p.E154V	AGTATTTCCAAAA	.	23	5	32	0	.	.
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1811727	1811727	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138813	exon2	c.T9A	p.T3T	GGGGCCAGTGCCC	.	14	10	16	0	.	.
FMO6P	388714	hgsc.bcm.edu	37	1	171116923	171116923	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTAAAGGTTTTGG	.	77	16	68	0	.	.
ATXN10	25814	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	46125305	46125305	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013236	exon7	c.A729G	p.R243R	TTACAGAGTTACA	.	15	7	40	0	.	.
CALCB	797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	15096669	15096669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000728	exon3	c.T149G	p.L50R	TCCTGCTGGCTGC	.	31	13	48	0	.	.
PLSCR3	57048	hgsc.bcm.edu	37	17	7297797	7297797	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTCACCTGGAGCC	.	14	6	35	0	.	.
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	7669733	7669733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003621	exon18	c.A1762C	p.T588P	GGCCACACCTTAT	.	10	7	31	0	.	.
RSU1P2	100133308	hgsc.bcm.edu	37	10	45601831	45601831	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCAGTTTCTAAGA	.	10	7	6	0	.	.
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	60330334	60330334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015888	exon17	c.C1657T	p.H553Y	GAAGCTCATATGT	.	97	38	144	0	.	.
RNU6-81	100873780	hgsc.bcm.edu	37	2	132349305	132349305	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCTCTTCTGTGAA	.	94	38	187	0	.	.
UPP2	151531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	158977952	158977952	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001135098	exon7	c.T657G	p.D219E	AACGGATATAGCT	.	71	24	116	0	.	.
RNU6-71	100873774	hgsc.bcm.edu	37	6	56406150	56406150	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACATCCAGTGTTC	.	59	14	68	0	.	.
YY1P2	647012	hgsc.bcm.edu	37	2	139655835	139655835	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGCAAGTATGAAG	.	14	6	13	0	.	.
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205027329	205027329	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005076	exon4	c.A236T	p.E79V	GTACCGAGATGAA	.	33	21	31	0	.	.
ATXN10	25814	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	46125307	46125307	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013236	exon7	c.T731G	p.V244G	ACAGAGTTACACT	.	15	7	39	0	.	.
ZNF513	130557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27601102	27601102	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_144631	exon4	c.C936T	p.F312F	CCAAGGGAATAGC	.	21	14	51	0	.	.
PAX8	7849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	114002103	114002103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013952	exon4	c.G290A	p.R97H	TTCTGGCGTTTGT	.	33	17	40	0	.	.
GAS5	60674	hgsc.bcm.edu	37	1	173836681	173836681	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GAAATATTGGTGA	.	21	4	23	0	.	.
PLEKHG4	25894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67319000	67319000	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001129728	exon13	c.T2077G	p.C693G	TGCCACTGCCACC	.	35	16	61	0	.	.
SNX14	57231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	86267770	86267770	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153816	exon7	c.T558G	p.I186M	AGATGGAATATCC	.	83	19	80	0	.	.
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19344493	19344493	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003325	exon19	c.C2316T	p.L772L	TGGCAGGAGGATG	.	12	8	20	0	.	.
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20216384	20216384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_172194	exon1	c.C798G	p.F266L	CAGCTTCTCTGTG	.	27	6	37	0	.	.
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10789426	10789426	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014633	exon14	c.A1760C	p.K587T	AGAAGAAGTTTGA	.	57	25	89	0	.	.
NBPF10	100132406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145299899	145299899	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001039703	exon6	c.T948G	p.T316T	TCTAACTCAACTG	.	613	151	663	1	.	.
MYLK	4638	hgsc.bcm.edu;ucsc.edu	37	3	123332738	123332738	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTGCACTAGTATC	.	61	16	65	0	.	.
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65820161	65820161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006842	exon2	c.G151A	p.V51M	GAGCTGGTGGAGC	.	30	11	49	0	.	.
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	334725	334725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006849	exon3	c.T473C	p.L158P	TGCGGCTGGAGGA	.	19	5	22	0	.	.
DDX12P	440081	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	9571135	9571135	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCGCTCTGGACTC	.	45	8	74	0	.	.
ECM2	1842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95277473	95277473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001393	exon4	c.T494C	p.L165P	CTGAGTAGAGAAT	.	21	12	30	0	.	.
ODF2	4957	hgsc.bcm.edu	37	9	131256878	131256878	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153435	exon17	c.A2034G	p.Q678Q	GTGCCAAGACCAA	.	12	6	17	0	.	.
ATP8B1	5205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	55336582	55336582	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005603	exon18	c.A2065T	p.K689X	ATACTTTATCCAG	.	109	47	156	0	.	.
PPP1R16A	84988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145725522	145725522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032902	exon4	c.T520A	p.Y174N	ATGCCCTATGACC	.	42	14	66	0	.	.
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9047293	9047293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020974	exon20	c.G2639A	p.G880E	CTGTTCCCTTCAT	.	46	20	58	0	.	.
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4920542	4920542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001079514	exon10	c.A1337G	p.Q446R	CTCTCCAGAAGCT	.	12	5	26	0	.	.
DCAF7	10238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61660866	61660866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005828	exon5	c.T532C	p.Y178H	CAGGTCTATGATA	.	63	27	108	0	.	.
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168348587	168348587	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MLLT4_ENST00000392108,NS,carcinoma,0,3	MLLT4_ENST00000392108	NM_001040000	exon27	c.A3587C	p.K1196T	CAGCGAAGATAAC	.	19	9	37	0	.	0
COPA	1314	hgsc.bcm.edu;ucsc.edu	37	1	160269048	160269048	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098398	exon18	c.C1701T	p.H567H	GATCCCGTGGTCC	.	40	4	22	0	.	.
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29440787	29440787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001206998	exon5	c.A653G	p.D218G	ACTTTGACATGGG	.	20	14	75	0	.	.
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	136700368	136700368	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CHRM2,colon,carcinoma,+2,1	CHRM2	NM_001006632	exon3	c.C756T	p.D252D	CAGTGACGATGGC	.	25	11	45	0	.	+2
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37883077	37883077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004448	exon25	c.T2980G	p.L994V	GAGGACTTGGGCC	.	18	8	34	0	.	.
RPS12	6206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133137642	133137642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001016	exon4	c.G174T	p.E58D	TGATGAGCCTATG	.	19	9	36	0	.	.
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176811561	176811561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PAPPA2,colon,carcinoma,-1,2	PAPPA2	NM_020318	exon23	c.C5347G	p.R1783G	ACCTGCCGGGACC	.	61	16	43	0	.	-1
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15976773	15976773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001190440	exon27	c.A3829G	p.R1277G	ACTCCCTCATTGA	.	59	28	80	0	.	.
HAMP	57817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35775743	35775743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021175	exon2	c.A142G	p.S48G	AGGGCCAGCTGGA	.	33	12	37	0	.	.
HPSE	10855	hgsc.bcm.edu;bcgsc.ca	37	4	84222115	84222115	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001098540	exon11	c.C1470A	p.S490S	TTACTTGGAAAGT	.	56	4	144	0	.	.
TYMP	1890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50967621	50967621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001257989	exon3	c.G361A	p.V121M	CACCCACACCCCC	.	46	21	62	0	.	.
MCOLN1	57192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7591678	7591678	+	Missense_Mutation	SNP	G	G	C	rs147878118	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020533	exon4	c.G437C	p.R146P	TGGGCCGGTATGC	.	36	17	58	0	.	.
BCO2	83875	hgsc.bcm.edu	37	11	112065435	112065435	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	BCO2,NS,carcinoma,0,1	BCO2	NM_031938	exon5	c.G693T	p.L231L	TGACCTGGATGGA	.	33	2	58	0	.	0
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47918881	47918881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001037735	exon5	c.A950C	p.K317T	TAGGGTTTCTCCC	.	27	24	33	0	.	.
GBP1P1	400759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	89889824	89889824	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGAACGTGTGAAA	.	9	4	67	0	.	.
NHLRC2	374354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115657896	115657896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198514	exon6	c.T1067C	p.L356S	ACATTTTATGGAT	.	108	45	229	0	.	.
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	103410551	103410551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006035	exon30	c.C4085T	p.P1362L	TGGAATGGCTTCG	.	19	6	29	0	.	.
PIK3R4	30849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130452666	130452666	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014602	exon4	c.T1176C	p.C392C	GGAATCACAGTAT	.	61	20	83	0	.	.
YEATS2	55689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	183528369	183528369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018023	exon31	c.T4267C	p.X1423R	GACCAGTGAGCGG	.	32	12	42	0	.	.
MRPS16	51021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75011619	75011619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016065	exon2	c.A176C	p.N59T	TGACTGTTGGGCA	.	47	21	76	0	.	.
PLRG1	5356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	155463385	155463385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002669	exon8	c.C641T	p.P214L	TTTCCAGGTTCCA	.	9	7	46	0	.	.
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140736182	140736182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018917	exon1	c.T1415C	p.L472S	CCATCTTATCTAT	.	24	14	46	0	.	.
DMXL2	23312	hgsc.bcm.edu	37	15	51741202	51741202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	DMXL2,bladder,carcinoma,0,1	DMXL2	NM_001174116	exon43	c.C9093A	p.N3031K	AATTCTGTTAGGG	.	32	2	63	0	.	0
ERN1	2081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62142632	62142632	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001433	exon9	c.T858C	p.V286V	TTTCCCAACATAC	.	24	9	63	0	.	.
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	70332549	70332549	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133266	exon10	c.G2085A	p.E695E	GTCGGTCTCGTAC	.	30	13	35	0	.	.
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39879568	39879568	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015038	exon1	c.A3631T	p.T1211S	GTGGCCACCCTAG	.	42	10	45	0	.	.
HAUS4	54930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23416891	23416891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166269	exon8	c.G758A	p.R253Q	TTCAGCCGGTGTT	.	59	31	79	0	.	.
FTSJD2	23070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37441251	37441251	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015050	exon17	c.T1695C	p.T565T	GGGCACTGAGATT	.	35	18	23	0	.	.
FAM64A	54478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6351018	6351018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_019013	exon3	c.C530T	p.S177L	GGCGATCAAGGCG	.	28	15	57	0	.	.
ACVR1B	91	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52377793	52377793	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020328	exon6	c.C945A	p.T315T	TGGCACCTGGACA	.	42	22	53	0	.	.
C1orf174	339448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3807598	3807598	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_207356	exon3	c.A153C	p.T51T	CGTGTCTGTGGCT	.	42	17	73	0	.	.
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	46930297	46930297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000809	exon9	c.A1610G	p.Y537C	ACCCAATAAACCA	.	103	28	109	0	.	.
STK39	27347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	169038515	169038515	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.,2	.	NM_013233	exon2	c.A294C	p.K98N	CTGGCATTTTTCC	.	32	14	48	0	.	95
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50855117	50855117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001170804	exon11	c.T1321C	p.Y441H	GGGGACTATGGTA	.	34	15	56	0	.	.
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24826538	24826538	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014494	exon19	c.T4743G	p.T1581T	CAGTACTTCACCA	.	39	31	65	0	.	.
HSPA12B	116835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3730721	3730721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052970	exon11	c.C1148A	p.A383D	CGGCAGCCTGGGT	.	18	5	47	0	.	.
MIR449C	100313923	hgsc.bcm.edu;ucsc.edu	37	5	54468121	54468121	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCAACTAGCAACT	.	28	14	40	0	.	.
PARD6G-AS1	100130522	hgsc.bcm.edu;ucsc.edu	37	18	77906016	77906016	+	RNA	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACGGGCAGCGGGG	.	20	7	15	0	.	.
MACROD2	140733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	16025251	16025251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001033087	exon13	c.C562A	p.P188T	AATGACCCAACAG	.	61	19	105	0	.	.
CAPN1	823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64950279	64950279	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001198869	exon2	c.A107C	p.K36T	CCATCAAGTACCT	.	18	10	48	0	.	.
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12279634	12279634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002336	exon20	c.T4303A	p.S1435T	GAAGAGATCCTGA	.	34	14	76	0	.	.
ATE1	11101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	123670610	123670610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001001976	exon5	c.A394G	p.N132D	GTTTATTTATCAA	.	26	6	31	0	.	.
CRYBG3	131544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97594051	97594051	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153605	exon4	c.C4013G	p.A1338G	TTCAGGCTAATAC	.	63	17	72	0	.	.
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	121587136	121587136	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014937	exon20	c.T3243A	p.V1081V	CCAGGTTGCTAGT	.	56	22	87	0	.	.
PRMT7	54496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68380156	68380156	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_019023	exon11	c.T1164C	p.T388T	CAGAACTGATCGA	.	20	10	26	0	.	.
NDEL1	81565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8354204	8354204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001025579	exon6	c.A633C	p.Q211H	CGTCCAAGCATCA	.	35	18	54	0	.	.
AXIN2	8313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	63526145	63526145	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004655	exon11	c.G2481T	p.V827V	CGGGAGCACCGTC	.	22	6	38	0	.	.
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17600083	17600083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015907	exon10	c.A1082C	p.D361A	AGGTTGATAACAC	.	56	8	77	0	.	.
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97868425	97868425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001005514	exon1	c.T196G	p.L66V	GGGAATTTAGCTT	.	104	20	151	0	.	.
TMEM39B	55116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	32560448	32560448	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018056	exon7	c.T991G	p.S331A	AGCACCTCCGTGA	.	22	8	13	0	.	.
USP28	57646	hgsc.bcm.edu	37	11	113683165	113683165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	USP28,NS,carcinoma,0,1	USP28	NM_020886	exon16	c.G1805T	p.W602L	TAGGCCCAATAGT	.	24	2	31	0	.	0
TSNAX-DISC1	0	hgsc.bcm.edu	37	1	231678136	231678136	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CATACAATATTTA	.	86	19	55	0	.	.
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156622046	156622046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198427	exon8	c.A1304G	p.E435G	AATTTGAAACACA	.	62	16	90	0	.	.
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39879575	39879575	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015038	exon1	c.A3638T	p.E1213V	CCCTAGAGGAATT	.	40	9	46	0	.	.
DGKB	1607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	14613961	14613961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_145695	exon19	c.A1649C	p.D550A	TCAATGTCTTTTA	.	31	13	49	0	.	.
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2886950	2886950	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_033225	exon51	c.T7746G	p.A2582A	TACTTGAGCACCG	.	19	8	31	0	.	.
PALLD	23022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169824935	169824935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166108	exon15	c.A2500G	p.I834V	AAGCAGATCTCTC	.	28	19	64	0	.	.
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	101395620	101395620	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014415	exon1	c.C139G	p.L47V	AATACAGAGTCCC	.	27	10	17	0	.	.
ORM1	5004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117086362	117086362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000607	exon3	c.A322G	p.R108G	ATCTCCAGATACG	.	23	8	37	0	.	.
HNRNPA1P10	664709	hgsc.bcm.edu	37	12	54675101	54675101	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTAGTTTTTCTTT	.	30	12	83	0	.	.
ARL8A	127829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202107156	202107156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138795	exon3	c.T215C	p.I72T	CCCCCAATGTCCC	.	38	27	31	0	.	.
UBE3D	90025	hgsc.bcm.edu	37	6	83667047	83667047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	UBE2CBP,NS,carcinoma,0,1	UBE2CBP	NM_198920	exon9	c.G1133A	p.R378H	TTCACACGGCGAA	.	47	2	58	0	.	0
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31437697	31437697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014676	exon14	c.T2147G	p.L716R	TTATAAAGGTCAC	.	66	32	68	0	.	.
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5632703	5632703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003088	exon1	c.T136C	p.W46R	CAGATCTGGACGC	.	35	14	53	0	.	.
GDPD4	220032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76954813	76954813	+	Silent	SNP	G	G	A	rs199737312		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182833	exon12	c.C1167T	p.S389S	TTCAATGGATACT	.	68	22	138	0	0.001	.
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	57584755	57584755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002332	exon43	c.A7199C	p.K2400T	TGGACAAGATCGA	.	14	7	16	0	.	.
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	387246	387246	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014974	exon29	c.C3477A	p.A1159A	GCAGAAGGCACTG	.	38	14	71	0	.	.
STARD4-AS1	100505678	hgsc.bcm.edu;ucsc.edu	37	5	111065333	111065333	+	RNA	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AAGGCCTGCCCTG	.	59	32	88	0	.	.
UBAP2	55833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33927945	33927945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018449	exon20	c.T2221G	p.F741V	TGGAGAAGGTGGC	.	24	10	47	0	.	.
TAS2R9	50835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	10962375	10962375	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_023917	exon1	c.T300G	p.T100T	GCAAGAAGTAAAC	.	56	17	72	0	.	.
DCTN6	10671	hgsc.bcm.edu	37	8	30013852	30013852	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTATCGCTCTACC	.	40	12	56	0	.	.
BFSP1	631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	17475396	17475396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001195	exon8	c.T1321G	p.F441V	TCCCAAAGCCTTT	.	27	15	27	0	.	.
PTDSS2	81490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	488603	488603	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030783	exon8	c.G810A	p.L270L	GTCCCTGAAGACG	.	19	8	35	0	.	.
PCDHB7	56129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140554443	140554443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018940	exon1	c.C2027T	p.A676V	CGGAGGCGGCCCC	.	146	18	201	0	.	.
CHD7	55636	hgsc.bcm.edu	37	8	61713037	61713037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CHD7_ENST00000423902,NS,carcinoma,0,2	CHD7_ENST00000423902	NM_017780	exon5	c.G2329A	p.A777T	GCAGATGCTGCTG	.	55	2	85	0	.	0
SNX5	27131	hgsc.bcm.edu	37	20	17936035	17936035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014426	exon3	c.G241A	p.E81K	TTGTTTCAATAAG	.	40	4	38	0	.	.
C1QBP	708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5341560	5341560	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001212	exon2	c.A266C	p.E89A	TTAATTTCATCAC	.	75	27	110	0	.	.
TSNAX-DISC1	0	hgsc.bcm.edu	37	1	231829484	231829484	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGACCTTTAAACC	.	17	4	11	0	.	.
RNF19B	127544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33409664	33409664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_153341	exon6	c.A1361C	p.K454T	ACTCCTTTTCCGT	.	46	22	62	0	.	.
RSU1P2	100133308	hgsc.bcm.edu	37	10	45601819	45601819	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CATCTTTCATCAG	.	8	6	6	0	.	.
IARS	3376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95005505	95005505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_013417	exon28	c.G2993T	p.R998L	TTTTTGCGAAGTT	.	13	6	27	0	.	.
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35274078	35274078	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014106	exon3	c.A1558C	p.R520R	CATGTCTTTTTAA	.	41	16	72	0	.	.
TMEM245	23731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	111798539	111798539	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032012	exon16	c.T2346C	p.F782F	GAGATGAAAAATC	.	79	24	127	0	.	.
RNF138P1	379013	hgsc.bcm.edu;ucsc.edu	37	5	54826106	54826106	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CGAAATTTCTGGT	.	66	14	91	0	.	.
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48661354	48661354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006044	exon3	c.A170C	p.K57T	AAATGAAGAAGCT	.	8	7	18	0	.	.
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21333952	21333952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001146288	exon18	c.G1631T	p.G544V	TCCAGGGGGATCT	.	46	21	69	0	.	.
BLOC1S3	388552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	45683097	45683097	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_212550	exon2	c.C543A	p.R181R	CTGCCGCCTGCTG	.	8	6	26	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195511212	195511212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4_ENST00000463781	NM_018406	exon2	c.C7239G	p.H2413Q	GGTGGCGTGACCT	.	133	5	240	2	.	0
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20482963	20482963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015317	exon11	c.A1465C	p.S489R	GGCTACTTGCAGT	.	38	13	86	0	.	.
SNX30	401548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	115598546	115598546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001012994	exon5	c.A671G	p.E224G	TGGGCGAGTCAGT	.	14	6	38	0	.	.
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79360216	79360216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001166133	exon40	c.A5527G	p.T1843A	CTTATCACGGTAA	.	13	7	25	0	.	.
CYC1	1537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	145151139	145151139	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001916	exon3	c.G439T	p.E147X	GCTAAGGAGCTGG	.	22	7	38	0	.	.
TRIM55	84675	hgsc.bcm.edu	37	8	67049405	67049405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	TRIM55,trunk,malignant_melanoma,0,1	TRIM55	NM_184086	exon4	c.G583T	p.D195Y	CTGGAAGACACCT	.	23	2	28	0	.	0
TM4SF18	116441	hgsc.bcm.edu;bcgsc.ca	37	3	149051002	149051002	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001184723	exon1	c.A168G	p.S56S	GATGCCTGAGAAA	.	48	4	49	0	.	.
SRSF1	6426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56082914	56082914	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006924	exon4	c.A600C	p.P200P	ATAACTTGGACTT	.	31	10	31	0	.	.
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87454934	87454934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007013	exon18	c.A1925G	p.Q642R	GTCTGCAGATAAA	.	48	22	99	0	.	.
AMZ2P1	201283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	62971482	62971482	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GAGCCTCTGGAAA	.	39	16	41	0	.	.
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27420544	27420544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007149	exon6	c.T794G	p.L265R	TTTATAAGGTTTT	.	55	24	48	0	.	.
CALCR	799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	93073026	93073026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001164737	exon11	c.C794T	p.A265V	TTGCAGGCCATCA	.	33	14	54	0	.	.
ANXA9	8416	hgsc.bcm.edu	37	1	150956496	150956496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ANXA9,NS,carcinoma,0,1	ANXA9	NM_003568	exon5	c.G218T	p.R73I	GGAGCAGAGAGCA	.	36	2	36	0	.	0
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	31205128	31205128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005800	exon4	c.A385G	p.I129V	AATTATATTGCTA	.	44	20	59	0	.	.
C8orf33	65265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	146277985	146277985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_023080	exon2	c.T20C	p.L7P	GACATCTTGCTGG	.	78	28	91	0	.	.
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140755037	140755037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PCDHGA6_ENST00000517434,NS,carcinoma,0,1	PCDHGA6_ENST00000517434	NM_018919	exon1	c.G1387A	p.E463K	GTCCTTGAAAACA	.	30	13	21	0	.	0
UHMK1	127933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	162467956	162467956	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_175866	exon1	c.T166G	p.F56V	AAGCAGTTCTTGC	.	29	19	24	0	.	.
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu	37	2	220072731	220072731	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138802	exon4	c.T405C	p.S135S	TTGCTCTGGGGAG	.	9	4	11	0	.	.
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50025455	50025455	+	Splice_Site	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020945	exon32	c.5505+1G>A	.	CAAAAGGTAGGAC	.	34	12	45	0	.	.
ARHGAP19-SLIT1	0	hgsc.bcm.edu	37	10	98988750	98988750	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACCATCTGGTGAA	.	35	12	58	0	.	.
SLC27A5	10998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59009967	59009967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012254	exon10	c.T1988A	p.F663Y	AGTACAAACAGAG	.	25	10	37	0	.	.
CDH19	28513	hgsc.bcm.edu	37	18	64172343	64172343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	CDH19,right_lower_lobe,carcinoma,0,1	CDH19	NM_021153	exon12	c.C2025A	p.S675R	CTCAGCGCTTGTG	.	33	3	38	0	.	0
SLC5A10	125206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18880179	18880179	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001042450	exon9	c.C859A	p.R287R	GTGCAGCGATCAC	.	33	7	35	0	.	.
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131887488	131887488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_020911	exon12	c.C2503T	p.R835C	GCTGGCGCAGGGT	.	69	33	79	0	.	.
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67569785	67569785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_181523	exon4	c.T446C	p.L149P	CAACTCTATACAG	.	29	9	42	0	.	.
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129546839	129546839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001017395	exon3	c.C383A	p.P128Q	GCCTCTGGCTTGC	.	36	14	50	0	.	.
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151687099	151687099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007185	exon2	c.G199A	p.A67T	GCAGGGCGCTCTG	.	60	47	52	0	.	.
BTNL9	153579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180477173	180477173	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_152547	exon4	c.C540G	p.P180P	GTACCCCAAGCCT	.	38	21	37	0	.	.
PXN	5829	hgsc.bcm.edu;ucsc.edu	37	12	120649932	120649932	+	RNA	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCAGAGGCTCTGG	.	38	23	55	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195512373	195512373	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.,4	.	NM_018406	exon2	c.C6078A	p.S2026S	ACCAGTGGATGCT	.	67	3	149	0	.	1505
HRH1	3269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	11301253	11301253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000861	exon3	c.A530G	p.E177G	GCCGAGAGGACAA	.	7	5	26	0	.	.
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168307886	168307886	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001040000	exon13	c.T1686C	p.S562S	GTCGTCTGCCTCT	.	23	9	39	0	.	.
KIAA2018	205717	hgsc.bcm.edu	37	3	113376107	113376107	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	KIAA2018,colon,carcinoma,0,1	KIAA2018	NM_001009899	exon7	c.G4422A	p.Q1474Q	TTGTTGCTGTTGC	.	23	5	22	1	.	0
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186269020	186269020	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001134415	exon7	c.A1593C	p.E531D	CAACCATTCATAA	.	48	16	71	0	.	.
DHH	50846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49483683	49483683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021044	exon3	c.T1150C	p.S384P	GCCGAGAGTACCA	.	28	13	51	0	.	.
PLGLA	285189	hgsc.bcm.edu	37	2	107003012	107003012	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TATGTGAAGCCAT	.	92	42	158	0	.	.
ADCY3	109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25043665	25043665	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004036	exon20	c.C3180T	p.H1060H	GTCGTAGTGTGGT	.	54	21	83	0	.	.
TMEM150C	441027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83411279	83411279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001080506	exon7	c.A476G	p.E159G	CGTCCTTCATTCT	.	25	22	56	0	.	.
PDIK1L	149420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26448622	26448622	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001243532	exon3	c.A580C	p.S194R	GGTCTAAGTAAAG	.	22	14	43	0	.	.
TTLL9	164395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30486300	30486300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001008409	exon4	c.C138G	p.F46L	CCGGTTCAAGACC	.	33	17	26	0	.	.
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42525501	42525501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002088	exon14	c.C1823T	p.S608L	ATCTCCGAGCCCT	.	36	17	63	0	.	.
C15orf38-AP3S2	100526783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90431767	90431767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001199058	exon7	c.T862G	p.L288V	GGTCCAAGATTCC	.	23	19	60	0	.	.
NAGLU	4669	hgsc.bcm.edu	37	17	40689478	40689478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	NAGLU,colon,carcinoma,0,1	NAGLU	NM_000263	exon2	c.G446A	p.R149H	GGGCCCGCTGGGA	.	26	2	51	0	.	0
GIPC3	126326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	3589910	3589910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_133261	exon5	c.G787T	p.A263S	GAGCTGGGTAAGG	.	40	20	66	0	.	.
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20183169	20183169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004586	exon18	c.A1612G	p.R538G	AGTCTCTATGAAC	.	48	41	93	0	.	.
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	79011006	79011006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001161352	exon3	c.A549C	p.L183F	AAAGACTAAGACA	.	42	14	76	0	.	.
HBS1L	10767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	135358028	135358028	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001145207	exon5	c.A1567C	p.K523Q	CTAGCTTTGAACT	.	70	15	111	0	.	.
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3774554	3774554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005387	exon11	c.T1310G	p.F437C	GTTCCAAATCCTG	.	42	19	89	0	.	.
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41574848	41574848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001429	exon31	c.G7133A	p.S2378N	TTGCTAGCAATCC	.	38	14	62	0	.	.
GPR155	151556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	175346540	175346540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001267051	exon2	c.T145C	p.C49R	CAAAGCATTCCAG	.	26	17	35	0	.	.
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12279840	12279840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002336	exon20	c.C4097T	p.P1366L	GGTGCTGGTTCTT	.	64	23	95	0	.	.
BMP5	653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55638874	55638874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021073	exon4	c.G1000T	p.D334Y	AGGAGTCCTGATG	.	84	46	86	0	.	.
MREG	55686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216809713	216809713	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018000	exon5	c.T518G	p.L173R	GCAATGAGACGGT	.	18	9	19	0	.	.
CDK2	1017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56361718	56361718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_052827	exon2	c.A194G	p.K65R	TTGTCAAGTAAGT	.	52	22	52	0	.	.
TMPRSS11B	132724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69093790	69093790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_182502	exon10	c.A1090G	p.N364D	AATCATTCTAGAA	.	16	11	71	0	.	.
PAQR9	344838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	142681920	142681920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198504	exon1	c.T259G	p.F87V	TCCAGAAGTTGAG	.	14	4	14	0	.	.
VNN1	8876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133014343	133014343	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_004666	exon4	c.T646G	p.F216V	CATGGAAGAGTAT	.	103	29	82	0	.	.
KIF3A	11127	hgsc.bcm.edu	37	5	132038286	132038286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	KIF3A,colon,carcinoma,0,1	KIF3A	NM_007054	exon12	c.G1641T	p.K547N	AACTTTCTTTAAC	.	53	3	57	0	.	0
EDEM2	55741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33722569	33722569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018217	exon6	c.T674C	p.L225P	TCCCAGAGGCGCA	.	28	12	28	0	.	.
LEO1	123169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52242142	52242142	+	Missense_Mutation	SNP	C	C	T	rs367614131		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138792	exon10	c.G1661A	p.R554H	ATTCGGCGCTGCT	.	34	18	47	0	.	.
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137650127	137650127	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000093	exon18	c.C1920T	p.G640G	GCCAGGCGAGAAG	.	17	11	23	0	.	.
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	40665822	40665822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_018963	exon8	c.A746G	p.D249G	ATTTTATCACAGC	.	18	16	71	0	.	.
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52812387	52812387	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_002215	exon3	c.A170C	p.K57T	GTTTGAAAGTCAA	.	16	9	49	0	.	.
TSPAN12	23554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	120496757	120496757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012338	exon2	c.T61G	p.F21V	CCCAAAAGAGCAG	.	52	18	63	0	.	.
PJA2	9867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	108714025	108714025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014819	exon4	c.A1163C	p.E388A	TCTGTTTCCCTTT	.	76	20	80	0	.	.
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	72057114	72057114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_144982	exon1	c.T277C	p.S93P	GCTCAGACGCGTG	.	49	19	95	0	.	.
ZFP2	80108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178359047	178359047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030613	exon5	c.A733C	p.N245H	GAATGTAATGAAT	.	69	41	68	0	.	.
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	29639246	29639246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183378	exon8	c.T928G	p.S310A	ACCTTGAGCCCAC	.	133	58	215	0	.	.
RABL6	55684	hgsc.bcm.edu;broad.mit.edu	37	9	139734973	139734973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001173988	exon15	c.A2192C	p.X731S	AGCTCTAGGCCGG	.	11	5	9	0	.	.
TDO2	6999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156831267	156831267	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_005651	exon6	c.T522G	p.P174P	AGTCCCTTATAAC	.	30	24	105	0	.	.
SNX5	27131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	17928287	17928287	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_014426	exon11	c.T921G	p.D307E	TAAGAGATCCTGG	.	40	20	99	0	.	.
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120436670	120436670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021794	exon1	c.G2290T	p.A764S	TTTTTGCTTTAGA	.	103	55	165	0	.	.
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	144744760	144744760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_007124	exon4	c.A310T	p.N104Y	CAGAACAATGTAA	.	21	15	40	0	.	.
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33631568	33631568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ITPR3_ENST00000374316,NS,carcinoma,0,2	ITPR3_ENST00000374316	NM_002224	exon11	c.C1059G	p.C353W	GTACTGCCTGGTG	.	43	9	63	0	.	0
MCEE	84693	hgsc.bcm.edu;broad.mit.edu	37	2	71351654	71351654	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_032601	exon2	c.A60C	p.Q20H	GGGAGCTTGAAGT	.	7	4	14	0	.	.
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50733483	50733483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_022162	exon2	c.T158G	p.F53C	AAGGCTTCGAGAG	.	63	28	131	0	.	.
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21235170	21235170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000384	exon26	c.T4570C	p.S1524P	AGGAGGAGTTAAA	.	39	18	63	0	.	.
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90079728	90079728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GPR98,NS,carcinoma,0,2	GPR98	NM_032119	exon67	c.A13507G	p.S4503G	CTAGTGAGCAGAA	.	66	58	92	0	.	0
OR4N2	390429	hgsc.bcm.edu;bcgsc.ca	37	14	20295956	20295956	+	Missense_Mutation	SNP	G	G	T	rs75595142	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001004723	exon1	c.G349T	p.V117L	CTTGTTGTGATGG	.	126	29	175	0	.	.
RECK	8434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36091179	36091179	+	Silent	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_021111	exon10	c.T924G	p.L308L	TAAACTTTACAGC	.	54	28	62	0	.	.
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30734428	30734428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006662	exon24	c.C4037T	p.P1346L	CACGCCCCACGTT	.	46	22	78	0	.	.
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	115114210	115114210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016569	exon6	c.C1007A	p.S336Y	TCATCAGAGGTCC	.	30	13	52	0	.	.
DNAI1	27019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34500833	34500833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_012144	exon11	c.T1015C	p.C339R	GCCCTCTGCTGGT	.	33	10	48	0	.	.
MRTO4	51154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19584345	19584345	+	Silent	SNP	A	A	G	rs140351482	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_016183	exon6	c.A360G	p.T120T	ATACACAGAAATG	.	28	7	55	0	.	.
VAMP5	10791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85820227	85820227	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_006634	exon3	c.A298T	p.S100C	GACAGCAGTAGTG	.	19	7	36	0	.	.
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90079731	90079731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GPR98,caecum,carcinoma,0,1	GPR98	NM_032119	exon67	c.A13510G	p.R4504G	GTGAGCAGAATCA	.	66	58	89	0	.	0
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170734063	170734063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_172070	exon4	c.A904G	p.S302G	TTAAAGAGCTCTG	.	55	30	85	0	.	.
SAP30L	79685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153835544	153835544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_024632	exon4	c.A508T	p.S170C	AACAAGAGTAGAC	.	61	14	56	0	.	.
ATG2A	23130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64679638	64679638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015104	exon8	c.C1006G	p.Q336E	GCTGCTGGTTCAG	.	29	15	56	0	.	.
MIR600HG	81571	hgsc.bcm.edu;ucsc.edu	37	9	125874010	125874010	+	RNA	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCCAGTTTGTCAG	.	37	12	53	0	.	.
KRT10	3858	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38976869	38976869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_000421	exon3	c.G761T	p.G254V	CGCAGGCCGTTGA	.	28	12	40	0	.	.
.	0	broad.mit.edu	37	1	5875969	5875984	+	RNA	DEL	ATTGAAAGTAATGGCA	ATTGAAAGTAATGGCA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTTGCCATTGAAA	.	10	2	12	0	.	.
.	0	broad.mit.edu	37	1	16543166	16543179	+	RNA	DEL	CTTACCCTGAGCCA	CTTACCCTGAGCCA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGAGCGCTTACCC	.	32	11	40	0	.	.
ATAD3C	219293	broad.mit.edu	37	1	1389795	1389795	+	Missense_Mutation	SNP	A	A	T	rs1610766	by2hit2allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ATAD3C	NM_001039211	exon4	c.A293T	p.Y98F	GCCGCTACATCGA	.	43	9	57	0	.	23
CNN3	1266	broad.mit.edu;bcgsc.ca	37	1	95368720	95368720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CNN3	NM_001839	exon3	c.204delC	p.G68fs	CACTGAGCCTGGC	.	23	8	116	0	.	23
GPATCH2	55105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	217783668	217783668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	GPATCH2	NM_018040	exon5	c.T1093G	p.S365A	CCATTGAAGTTGG	.	140	31	119	1	.	53
HIST3H2BB	128312	broad.mit.edu	37	1	228646009	228646009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	HIST3H2BB	NM_175055	exon1	c.T179G	p.M60R	AGGCCATGGGCAT	.	196	4	134	0	.	23
MFSD2A	84879	broad.mit.edu	37	1	40431616	40431616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MFSD2A	NM_001136493	exon6	c.A683G	p.D228G	TCCAGGACCTCAA	.	16	3	25	0	.	53
KIAA1804	0	broad.mit.edu	37	1	233464401	233464409	+	In_Frame_Del	DEL	CCGAGCGCT	CCGAGCGCT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	KIAA1804	NM_032435	exon1	c.627_635del	p.209_212del	GCTCAACCGAGCG	.	8	4	8	0	.	129
PLEKHA6	22874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204236606	204236606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PLEKHA6	NM_014935	exon5	c.A277G	p.K93E	CACCTTTATAGTA	.	31	18	38	0	.	115
THRAP3	9967	broad.mit.edu;bcgsc.ca	37	1	36759444	36759456	+	Splice_Site	DEL	AATTTTAGGAGAA	AATTTTAGGAGAA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	THRAP3	NM_005119	exon8	c.2031_2035del	p.677_679del	ATTTTCAATTTTA	.	39	7	101	0	.	93
TRNP1	388610	broad.mit.edu	37	1	27320310	27320310	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	TRNP1	NM_001013642	exon1	c.33delG	p.P11fs	CGGCCCGGGGGCC	.	6	2	13	0	.	2
.	0	broad.mit.edu;bcgsc.ca	37	10	80510398	80510398	+	RNA	DEL	T	T	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTGCGGTTTTTGC	.	36	14	52	0	.	.
HNRNPF	3185	broad.mit.edu	37	10	43882519	43882526	+	Frame_Shift_Del	DEL	ACATTCCG	ACATTCCG	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	HNRNPF	NM_001098204	exon4	c.807_814del	p.269_272del	GGTCATACATTCC	.	13	5	18	0	.	57
HPSE2	60495	broad.mit.edu	37	10	100904026	100904026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	HPSE2	NM_001166246	exon3	c.C579A	p.F193L	ATTGGAGAATTGC	.	12	3	19	0	.	203
MGEA5	10724	broad.mit.edu;bcgsc.ca	37	10	103577755	103577755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MGEA5	NM_001142434	exon1	c.A25G	p.T9A	CCAACGTCGCTTG	.	20	5	28	0	.	53
PPP3CB	5532	broad.mit.edu	37	10	75255630	75255630	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PPP3CB	NM_001142354	exon1	c.G18T	p.P6P	CCGGGCCGGCTCC	.	17	10	16	0	.	68
C11orf88	399949	broad.mit.edu;bcgsc.ca	37	11	111385536	111385536	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	C11orf88	NM_001100388	exon1	c.T27A	p.P9P	AGAACCTAGCGGC	.	39	14	42	1	.	37
DLAT	1737	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111933226	111933226	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	DLAT	NM_001931	exon14	c.G1911A	p.K637K	TAGAAAGTACCTT	.	90	35	156	1	.	39
FADS1	3992	broad.mit.edu	37	11	61584238	61584238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FADS1	NM_013402	exon1	c.G164T	p.R55M	GCTGGCCTGGCGA	.	14	5	22	0	.	19
FAM99B	0	broad.mit.edu	37	11	1706483	1706491	+	RNA	DEL	CCAGGCTGA	CCAGGCTGA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CAGCCTCCAGGCT	.	11	2	18	0	.	.
KBTBD4	55709	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47594521	47594521	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	KBTBD4	NM_018095	exon4	c.T1566G	p.I522M	CACCTTAATACCT	.	28	6	51	0	.	55
MALAT1	0	broad.mit.edu;ucsc.edu	37	11	65268621	65268621	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MALAT1	.	.	.	.	TGTTTTTACTTCC	.	45	25	91	0	.	3
NLRX1	79671	broad.mit.edu;bcgsc.ca	37	11	119050924	119050924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	NLRX1	NM_024618	exon7	c.T2194G	p.L732V	GTGAACTTGGCCT	.	8	3	21	0	.	128
RDX	5962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	110124822	110124822	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RDX	NM_001260493	exon9	c.T808A	p.Y270N	GTGCATAAAACAC	.	40	18	71	0	.	59
.	0	broad.mit.edu;ucsc.edu	37	11	130731697	130731697	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AATTTCCGTTGAA	.	41	15	58	0	.	.
A2M	2	broad.mit.edu	37	12	9264989	9264989	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	A2M	NM_000014	exon3	c.C414A	p.Y138X	TGGTTTGTAGATT	.	61	3	91	0	.	180
.	144535	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	96883547	96883547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCCGAGGACTCAT	.	77	31	139	0	.	.
PSMD9	5715	broad.mit.edu	37	12	122326825	122326825	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PSMD9	NM_001261400	exon1	c.C63T	p.S21S	TGTCAGCGACGTC	.	38	3	68	0	.	8
RARG	5916	broad.mit.edu	37	12	53607314	53607314	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RARG	NM_000966	exon8	c.A984T	p.T328T	CAGCCCTGTCTCG	.	12	3	21	0	.	53
TIMELESS	8914	broad.mit.edu	37	12	56822671	56822671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	TIMELESS	NM_003920	exon11	c.C1300T	p.R434C	ACCGGCGTGCCCA	.	15	4	17	0	.	107
.	220416	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	46802187	46802187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTGTATCTATGAA	.	51	22	85	0	.	.
ADAM21	8747	broad.mit.edu;bcgsc.ca	37	14	70924269	70924269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ADAM21	NM_003813	exon2	c.G53T	p.W18L	TGCTCTGGCTTGG	.	11	6	27	0	.	181
AHNAK2	113146	broad.mit.edu	37	14	105414880	105414880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	AHNAK2	NM_138420	exon7	c.A6908G	p.D2303G	GACATGTCCCCCT	.	74	3	131	0	.	719
ASB2	51676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94401066	94401066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ASB2	NM_001202429	exon10	c.T1844C	p.L615P	TCTAGGAGTTTTA	.	58	25	81	2	.	71
.	0	broad.mit.edu	37	14	106382684	106382684	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CACTGTGGGCATA	.	74	29	127	1	.	.
.	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	106993973	106993973	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCACTCCAGCCCC	.	48	23	114	0	.	.
PSMC1	5700	broad.mit.edu;bcgsc.ca	37	14	90736595	90736609	+	In_Frame_Del	DEL	CGCATCTTTCAGATT	CGCATCTTTCAGATT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PSMC1	NM_002802	exon10	c.1087_1101del	p.363_367del	AAGAAGCGCATCT	.	28	6	68	0	.	27
.	0	broad.mit.edu	37	16	28468222	28468222	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ATCAGTTATAGAA	.	63	16	122	0	.	.
PDP2	57546	broad.mit.edu	37	16	66918662	66918662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PDP2	NM_020786	exon2	c.T475C	p.Y159H	TTCTACTATGTGG	.	9	3	10	0	.	39
LOC283914	0	broad.mit.edu;bcgsc.ca	37	16	34624256	34624256	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCTGAACCATCTG	.	11	3	19	0	.	.
.	0	broad.mit.edu	37	16	29449546	29449582	+	RNA	DEL	TAAACATTAAAAGACAGTTACTTTCAGCTGGCCAAAA	TAAACATTAAAAGACAGTTACTTTCAGCTGGCCAAAA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGCTATTAAACAT	.	158	5	329	0	.	.
ABCA9	10350	broad.mit.edu;bcgsc.ca	37	17	67014691	67014706	+	Frame_Shift_Del	DEL	GGGATAAAGCTAATAC	GGGATAAAGCTAATAC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ABCA9	NM_080283	exon20	c.2615_2630del	p.872_877del	AGTTGAGGGATAA	.	23	6	49	0	.	192
ABCC3	8714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48753044	48753044	+	Silent	SNP	C	C	A	rs371874263	alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ABCC3	NM_003786	exon21	c.C2767A	p.R923R	GTACCCCGGAGGC	.	13	8	24	0	.	138
ELP5	23587	broad.mit.edu;bcgsc.ca	37	17	7156115	7156124	+	Frame_Shift_Del	DEL	CTCTTGAAGG	CTCTTGAAGG	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_203414	exon2	c.121_130del	p.41_44del	CGCAGTCTCTTGA	.	19	6	47	0	.	.
FLII	2314	broad.mit.edu	37	17	18156676	18156676	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FLII	NM_002018	exon9	c.A952T	p.N318Y	CCAGGTTGGTGAG	.	11	4	30	0	.	79
PER1	5187	broad.mit.edu;bcgsc.ca	37	17	8051527	8051527	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PER1	NM_002616	exon9	c.A1099C	p.S367R	GGCAGCTGGGTGT	.	12	6	19	0	.	104
PER1	5187	broad.mit.edu	37	17	8051559	8051559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PER1	NM_002616	exon9	c.A1067G	p.D356G	CTCTTGTCAGGGG	.	12	4	16	0	.	104
LOC100130950	0	broad.mit.edu	37	17	5096766	5096766	+	RNA	DEL	A	A	-	rs373321272		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AAAAATAAAAAAA	.	5	1	17	0	.	.
CDH2	1000	broad.mit.edu	37	18	25565702	25565702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CDH2	NM_001792	exon12	c.G1765A	p.G589R	GCGTTCCTGTTCC	.	14	4	32	0	.	194
FBL	2091	broad.mit.edu	37	19	40331279	40331279	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FBL	NM_001436	exon2	c.C159T	p.G53G	TCCACCGCCGCCG	.	62	5	82	2	.	37
PPP5C	5536	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46891939	46891939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PPP5C	NM_006247	exon11	c.G1306A	p.V436M	TACGAGGTGGCTC	.	12	5	24	0	.	44
SPHK2	56848	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49132945	49132945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SPHK2	NM_020126	exon7	c.A1880C	p.E627A	AGGTGGAGTATGG	.	13	5	26	0	.	62
SPHK2	56848	broad.mit.edu;ucsc.edu	37	19	49132949	49132949	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SPHK2	NM_020126	exon7	c.T1884A	p.Y628X	GGAGTATGGGCCG	.	13	5	25	0	.	62
ZNF177	7730	broad.mit.edu;bcgsc.ca	37	19	9491917	9491917	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ZNF177	NM_001172651	exon6	c.A910C	p.R304R	CACATGAGATCTC	.	30	12	49	1	.	57
LIMS1	0	broad.mit.edu	37	2	109150329	109150329	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	LIMS1	.	.	.	.	GCACCCAGCGGTG	.	11	4	8	0	.	38
.	0	broad.mit.edu	37	2	65894933	65894933	+	RNA	DEL	A	A	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGGTTTAAAAAAA	.	8	2	3	0	.	.
KCNF1	3754	broad.mit.edu;bcgsc.ca	37	2	11053983	11053983	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	KCNF1	NM_002236	exon1	c.1431delC	p.I477fs	CTTCATCCCCCTC	.	32	8	50	0	.	70
MERTK	10461	broad.mit.edu	37	2	112656268	112656268	+	Translation_Start_Site	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MERTK	.	.	.	.	CGTCCATCTGTCC	.	5	2	9	0	.	112
SPTBN1	0	broad.mit.edu;bcgsc.ca	37	2	54857084	54857084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SPTBN1	NM_003128	exon15	c.A2725G	p.N909D	GTGGTGAACCAGA	.	6	3	20	0	.	378
SRD5A2	6716	broad.mit.edu	37	2	31751121	31751121	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCACTCAGAATCC	.	29	8	34	0	.	.
STRN	6801	broad.mit.edu;bcgsc.ca	37	2	37084999	37084999	+	Splice_Site	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	STRN	NM_003162	exon14	c.G1837C	p.E613Q	ATGTACCTTTAGT	.	14	7	50	0	.	71
WDFY1	57590	broad.mit.edu;bcgsc.ca	37	2	224758968	224758968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	WDFY1	NM_020830	exon8	c.G814A	p.D272N	TAACATCCATGTT	.	34	16	47	0	.	46
ADAM33	80332	broad.mit.edu	37	20	3654549	3654549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ADAM33	NM_025220	exon9	c.A748G	p.T250A	CCAGAGTCCTGAG	.	11	7	17	0	.	76
MMP9	4318	broad.mit.edu;bcgsc.ca	37	20	44643002	44643008	+	Splice_Site	DEL	GCCCGCA	GCCCGCA	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MMP9	.	.	.	.	GCGCCTGCCCGCA	.	28	7	43	0	.	84
RALGAPB	57148	broad.mit.edu	37	20	37117260	37117260	+	Splice_Site	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RALGAPB	NM_020336	exon2	c.A185C	p.E62A	ACAAAGAAGTAAG	.	17	4	46	0	.	134
SLC23A2	9962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	4839936	4839936	+	Splice_Site	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SLC23A2	NM_203327	exon16	c.A1719C	p.P573P	CGTACCTGGGATG	.	78	31	133	0	.	62
BAGE2	85319	broad.mit.edu	37	21	11043037	11043039	+	RNA	DEL	TGC	TGC	-	rs149525628	bycluster	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGTTGTTGCTGTT	.	6	2	5	0	.	.
BTG3	10950	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	18966436	18966436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	BTG3	NM_001130914	exon6	c.A866C	p.N289T	TGAGGATTAATCC	.	36	23	91	0	.	27
PFKL	5211	broad.mit.edu;bcgsc.ca	37	21	45746699	45746699	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PFKL	NM_002626	exon22	c.T2297G	p.L766R	GGGAGCTGGAGCA	.	23	17	94	3	.	65
CDC42EP1	11135	broad.mit.edu	37	22	37964736	37964736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CDC42EP1	NM_152243	exon3	c.A1085G	p.Q362R	CGCCCCAGGCAGG	.	8	3	14	0	.	53
EP300	2033	broad.mit.edu	37	22	41513219	41513219	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	EP300	NM_001429	exon2	c.C123G	p.H41Q	GGAGCACGACTTA	.	35	12	52	0	.	367
LOC96610	0	broad.mit.edu	37	22	22663052	22663052	+	RNA	SNP	T	T	C	rs4043415		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTGGGGTTCCTGT	.	87	6	221	1	.	.
TOP3B	8940	broad.mit.edu	37	22	22318376	22318376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	TOP3B	NM_003935	exon11	c.A1123C	p.I375L	GGTTGATACCTTC	.	10	3	15	0	.	107
LOC220729	0	broad.mit.edu;bcgsc.ca	37	3	197351427	197351427	+	RNA	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACATCCAGATCGT	.	119	24	126	0	.	.
.	285311	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	126916189	126916189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CAGCTGGACCCGG	.	57	13	63	0	.	.
FAM86DP	0	broad.mit.edu	37	3	75471400	75471400	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CAGAAGCTGAAAT	.	48	3	126	0	.	.
ITPR1	3708	broad.mit.edu	37	3	4878503	4878503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ITPR1	NM_001168272	exon60	c.G8029T	p.V2677F	TCATTGGTCAGCA	.	25	4	44	0	.	659
MON1A	84315	broad.mit.edu;bcgsc.ca	37	3	49967045	49967045	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MON1A	NM_032355	exon1	c.275delA	p.N92fs	CACCTGTTTCTCA	.	12	9	37	0	.	41
.	0	broad.mit.edu	37	3	192871852	192871852	+	RNA	DEL	T	T	-	rs34765749	bycluster	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTTAACTTTTTTT	.	7	3	4	0	T|0.500;-|0.500	.
ST6GAL1	6480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186760575	186760575	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ST6GAL1,right_lower_lobe,carcinoma,+2,1	ST6GAL1	NM_003032	exon3	c.A84C	p.E28D	GAAGGAAAAGAAG	.	42	17	58	0	.	36
CWH43	80157	broad.mit.edu	37	4	48988658	48988658	+	Translation_Start_Site	SNP	T	T	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CWH43	.	.	.	.	AGGGAATAAAGGA	.	26	3	23	0	.	101
HOPX	84525	broad.mit.edu;bcgsc.ca	37	4	57547691	57547691	+	Translation_Start_Site	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	HOPX	.	.	.	.	CGTCACTATCTTC	.	2	2	15	0	.	28
GUSBP1	0	broad.mit.edu	37	5	21491214	21491224	+	RNA	DEL	GAACCTGGGAG	GAACCTGGGAG	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCACTTGAACCTG	.	169	20	194	0	.	.
RAD50	10111	broad.mit.edu;bcgsc.ca	37	5	131931434	131931434	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RAD50	NM_005732	exon13	c.G2139A	p.K713K	ACTCAAGTCAACA	.	24	13	24	0	.	246
.	0	broad.mit.edu;bcgsc.ca	37	5	70741487	70741487	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AATTTTCTCTGTG	.	50	14	59	0	.	.
ZC3H12D	340152	broad.mit.edu	37	6	149772005	149772005	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ZC3H12D	NM_207360	exon6	c.A1398G	p.S466S	GTACACTGAAAGT	.	9	4	12	0	.	21
INHBA	3624	broad.mit.edu;bcgsc.ca	37	7	41729636	41729636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	INHBA	NM_002192	exon3	c.G893A	p.R298Q	GACTGCCGGGCCT	.	15	10	39	1	.	118
RABGEF1	154881	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66270137	66270137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RABGEF1	NM_014504	exon8	c.A831C	p.E277D	CATTGAAATGGAT	.	36	10	59	1	.	56
LINC00174	0	broad.mit.edu	37	7	65842005	65842005	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCTGGGCTTGTGG	.	9	4	10	0	.	.
CPSF1	29894	broad.mit.edu;bcgsc.ca	37	8	145618578	145618578	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CPSF1	NM_013291	exon38	c.C4287T	p.I1429I	GTCCAGGATCTGC	.	30	10	33	1	.	92
.	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	26906407	26906407	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCGGTTTTTGTCA	.	32	15	41	0	.	.
PARP10	84875	broad.mit.edu	37	8	145059959	145059959	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PARP10	NM_032789	exon3	c.T366G	p.P122P	ACAGCAAGGCTGT	.	19	3	30	0	.	57
BNIP3L	0	broad.mit.edu	37	8	26240232	26240232	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	BNIP3L	.	.	.	.	AGGTAGAAAACAG	.	5	2	22	1	.	7
LOC254896	8794	broad.mit.edu;bcgsc.ca	37	8	22960538	22960569	+	Frame_Shift_Del	DEL	CCTACCGTTAGGGAACTCTGGGGACAGAGCGC	CCTACCGTTAGGGAACTCTGGGGACAGAGCGC	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCGCTTCCTACCG	.	37	6	78	0	.	.
C9orf131	138724	broad.mit.edu;bcgsc.ca	37	9	35042287	35042287	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	C9orf131	NM_001040410	exon1	c.36delG	p.K12fs	GGCTAAGGGGGAT	.	18	8	32	0	.	71
CNTRL	11064	broad.mit.edu;bcgsc.ca	37	9	123937475	123937475	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CNTRL	NM_007018	exon41	c.A6927T	p.T2309T	CCTCACAGAGGAC	.	31	10	40	1	.	161
GARNL3	84253	broad.mit.edu	37	9	130026087	130026087	+	Translation_Start_Site	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	GARNL3	.	.	.	.	TGAAATGGTGGAA	.	12	5	8	0	.	83
LCN12	286256	broad.mit.edu	37	9	139848199	139848199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	LCN12	NM_178536	exon3	c.A299G	p.Q100R	CAGCCCAGCCTGG	.	38	5	61	0	.	11
TOR4A	54863	broad.mit.edu	37	9	140174311	140174311	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_017723	exon2	c.C1170T	p.R390R	GGCCCGCGCGGAG	.	4	3	13	0	.	.
ARSD	414	broad.mit.edu	37	X	2836254	2836254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ARSD	NM_001669	exon5	c.G454A	p.G152S	TCACACCCTGGTG	.	16	3	25	0	.	47
STS	412	broad.mit.edu;bcgsc.ca	37	X	7177472	7177482	+	Frame_Shift_Del	DEL	TGGGATCTCTT	TGGGATCTCTT	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	STS	NM_000351	exon5	c.480_490del	p.160_164del	TTTCTATGGGATC	.	6	4	17	0	.	64
ADCK2	90956	ucsc.edu	37	7	140373610	140373610	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ADCK2	NM_052853	exon1	c.G480A	p.S160S	GTTTTCGGAGGCT	.	33	4	45	0	.	37
PSKH2	85481	ucsc.edu;bcgsc.ca	37	8	87060845	87060845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PSKH2	NM_033126	exon3	c.C1004T	p.A335V	GATATGGCCCTCT	.	43	5	79	0	.	79
FERMT3	83706	ucsc.edu;bcgsc.ca	37	11	63986820	63986820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FERMT3	NM_031471	exon7	c.C884T	p.A295V	TGTTTGCCGCCCT	.	32	4	28	0	.	51
ESPL1	9700	ucsc.edu	37	12	53677189	53677189	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ESPL1	NM_012291	exon16	c.C2944T	p.Q982X	AAATGGCAGGTTC	.	31	4	61	1	.	158
C16orf93	90835	ucsc.edu	37	16	30770351	30770351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	C16orf93	NM_001014979	exon8	c.C799A	p.P267T	CTGGTGGGGCCAC	.	33	4	35	0	.	33
RNF165	494470	ucsc.edu	37	18	44015312	44015312	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	RNF165	NM_152470	exon3	c.C438T	p.G146G	CTTCGGCCAACTG	.	25	4	34	0	.	34
GZF1	64412	ucsc.edu	37	20	23345235	23345235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	GZF1	NM_022482	exon1	c.G215T	p.G72V	TGGATGGTACTAG	.	51	5	93	0	.	61
CNN3	1266	bcgsc.ca	37	1	95368702	95368706	+	Frame_Shift_Del	DEL	GTTGA	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GTTGA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CNN3	NM_001839	exon3	c.218_222del	p.73_74del	GGACTCGTTGACC	.	25	0	119	0	.	23
CNN3	1266	bcgsc.ca	37	1	95368708	95368712	+	Frame_Shift_Del	DEL	CTTCT	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CTTCT	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CNN3	NM_001839	exon3	c.212_216del	p.71_72del	GTTGACCTTCTTC	.	20	5	120	0	.	23
PRDM9	56979	bcgsc.ca	37	5	23527721	23527727	+	Frame_Shift_Del	DEL	CGCAATA	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CGCAATA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PRDM9,brain,primitive_neuroectodermal_tumour-medulloblastoma,-1,1	PRDM9	NM_020227	exon11	c.2524_2530del	p.842_844del	GGCTTTCGCAATA	.	81	6	74	0	.	344
PRDM9	56979	bcgsc.ca	37	5	23527730	23527738	+	In_Frame_Del	DEL	TCACACCTC	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	TCACACCTC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PRDM9	NM_020227	exon11	c.2533_2541del	p.845_847del	AATAAGTCACACC	.	77	6	79	0	.	344
CYP2E1	1571	bcgsc.ca	37	10	135340926	135340949	+	In_Frame_Del	DEL	CCTGCTGGTGTGGGCGGCCTTCCT	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CCTGCTGGTGTGGGCGGCCTTCCT	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CYP2E1	NM_000773	exon1	c.27_50del	p.9_17del	CGTGGCCCTGCTG	.	25	6	72	0	.	69
H19	283120	bcgsc.ca	37	11	2016914	2016914	+	RNA	DEL	G	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	H19	.	.	.	.	GCCGCAGGGGGTG	.	19	7	38	0	.	1
MSRB3	253827	bcgsc.ca	37	12	65672596	65672601	+	In_Frame_Del	DEL	CCTCTG	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CCTCTG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	MSRB3_ENST00000355192,rectum,carcinoma,+2,1	MSRB3	NM_198080	exon1	c.48_53del	p.16_18del	CCTCTCCCTCTGC	.	66	3	76	0	.	80
EMC4	51234	bcgsc.ca	37	15	34517724	34517724	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCTTGGTTTGGTT	.	65	11	92	0	.	.
CLPX	10845	bcgsc.ca	37	15	65447200	65447212	+	Frame_Shift_Del	DEL	CATCTAGGCTATG	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CATCTAGGCTATG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CLPX	NM_006660	exon11	c.1519_1531del	p.507_511del	TTTTCTCATCTAG	.	30	3	61	0	.	49
BAIAP3	8938	bcgsc.ca	37	16	1393409	1393430	+	Frame_Shift_Del	DEL	CAGCCGCCACCATCAAACCTGC	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CAGCCGCCACCATCAAACCTGC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	BAIAP3	NM_003933	exon15	c.1386_1407del	p.462_469del	GGTCAGCAGCCGC	.	26	3	67	0	.	88
FUS	2521	bcgsc.ca	37	16	31195693	31195698	+	In_Frame_Del	DEL	GGTGGA	-	-	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GGTGGA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	FUS	NM_004960	exon5	c.499_504del	p.167_168del	AGTGGTGGTGGAG	.	23	7	43	0	.	52
.	0	bcgsc.ca	37	1	26536413	26536413	+	RNA	SNP	C	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTGCTCCTCCAAC	.	25	10	31	0	.	.
.	0	bcgsc.ca	37	1	146791337	146791337	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTCTGACGAAAAG	.	14	8	25	0	.	.
.	644214	bcgsc.ca	37	1	224044438	224044438	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCCTTGGAGTCGC	.	15	4	25	0	.	.
.	0	bcgsc.ca	37	2	34628769	34628769	+	RNA	SNP	T	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCGGTTTTTGGCA	.	28	14	44	0	.	.
CEP68	23177	bcgsc.ca	37	2	65299502	65299502	+	Silent	SNP	G	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CEP68	NM_015147	exon3	c.G1272A	p.R424R	GGACCGGCTGACT	.	14	3	21	0	.	69
.	0	bcgsc.ca	37	2	114164265	114164265	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTATCCTGGTATC	.	60	22	127	0	.	.
.	0	bcgsc.ca	37	2	216743614	216743614	+	RNA	SNP	A	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCAAAAATCGCAA	.	23	11	56	0	.	.
STK11IP	114790	bcgsc.ca	37	2	220474092	220474092	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	STK11IP	NM_052902	exon17	c.T1967G	p.L656R	AGCTGCTTGCCGT	.	61	27	71	0	.	152
.	266724	bcgsc.ca	37	2	222828423	222828423	+	RNA	SNP	G	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CTGAACGAGAAGG	.	13	3	24	0	.	.
MIR1324	100302212	bcgsc.ca	37	3	75679969	75679969	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCCTCTGGGTACC	.	378	17	680	1	.	.
CLDN1	9076	bcgsc.ca	37	3	190030784	190030784	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CLDN1	NM_021101	exon2	c.C265A	p.L89I	CCAGGAGGATGCC	.	47	4	45	0	.	23
.	53409	bcgsc.ca	37	4	24659835	24659835	+	RNA	SNP	T	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TATTGTTTTCAGG	.	28	8	31	0	.	.
.	0	bcgsc.ca	37	4	70013196	70013196	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTTTTCTGGATCG	.	16	12	64	0	.	.
STOX2	56977	bcgsc.ca	37	4	184931986	184931986	+	Silent	SNP	C	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	STOX2	NM_020225	exon3	c.C1995T	p.P665P	GGGCCCCGCTGCT	.	18	3	59	0	.	142
GUSBP1	0	bcgsc.ca	37	5	21483021	21483021	+	RNA	SNP	C	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGGGCACGTGCTG	.	556	88	463	0	.	.
.	0	bcgsc.ca	37	5	34192504	34192504	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGACAAGGCCACC	.	955	24	1156	0	.	.
.	285634	bcgsc.ca	37	5	39720610	39720610	+	RNA	SNP	A	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACATTGACACAGT	.	57	11	43	0	.	.
GPR98	84059	bcgsc.ca	37	5	89948370	89948370	+	Silent	SNP	A	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	GPR98,NS,carcinoma,+2,1	GPR98	NM_032119	exon19	c.A3624G	p.V1208V	ACTTGTAAACATT	.	38	13	42	0	.	605
.	0	bcgsc.ca	37	5	143902542	143902542	+	RNA	SNP	A	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TCAGCAAGCTGAG	.	32	23	37	0	.	.
.	0	bcgsc.ca	37	6	3978522	3978522	+	RNA	SNP	C	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGTTCCCACTTTT	.	26	14	35	0	.	.
.	0	bcgsc.ca	37	6	27704914	27704914	+	RNA	SNP	C	T	T	rs371851152		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGACTTCGGTAAT	.	71	44	89	0	.	.
.	0	bcgsc.ca	37	6	130068934	130068934	+	RNA	SNP	A	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGGCAAAAACCGC	.	4	4	17	0	.	.
.	0	bcgsc.ca	37	6	135219170	135219170	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ATATACGTACTGT	.	42	4	45	0	.	.
.	0	bcgsc.ca	37	6	139982567	139982567	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ATTAAAGGAAATA	.	10	3	18	0	.	.
.	0	bcgsc.ca	37	7	55005715	55005715	+	RNA	SNP	T	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTTCTTTTACAAT	.	63	6	81	0	.	.
.	100462826	bcgsc.ca	37	7	88078165	88078165	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GAAAATCTCTATG	.	13	6	18	0	.	.
.	55340	bcgsc.ca	37	7	150447077	150447077	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCAAACTGGAGAT	.	71	40	113	0	.	.
.	0	bcgsc.ca	37	7	155664620	155664620	+	RNA	SNP	T	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTGCGGTTTTTGC	.	30	13	40	0	.	.
.	389655	bcgsc.ca	37	8	49297445	49297445	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TACGTTGCCCACT	.	37	4	44	0	.	.
TTC39B	158219	bcgsc.ca	37	9	15307282	15307282	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	TTC39B	NM_001168340	exon1	c.A40C	p.N14H	CTCGATTTCCCCG	.	14	8	20	0	.	83
.	0	bcgsc.ca	37	9	32764313	32764313	+	RNA	SNP	A	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTGCAAAAGTAAT	.	59	26	86	0	.	.
.	347265	bcgsc.ca	37	9	102068170	102068170	+	Silent	SNP	T	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CATGTCTATGGTG	.	13	4	21	0	.	.
GAPVD1	26130	bcgsc.ca	37	9	128094335	128094335	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	GAPVD1	NM_015635	exon12	c.G2304T	p.V768V	TGTTGTGTCCGGT	.	55	4	63	0	.	124
.	0	bcgsc.ca	37	10	21683402	21683402	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTTAGCCGTCTAG	.	20	8	39	0	.	.
LINC00842	0	bcgsc.ca	37	10	47151591	47151591	+	Silent	SNP	A	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTCACGAGGGGGG	.	98	19	152	0	.	.
.	0	bcgsc.ca	37	10	80510412	80510412	+	RNA	SNP	T	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ATTACTTTTAATG	.	42	19	58	0	.	.
MMRN2	79812	bcgsc.ca	37	10	88703690	88703690	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	MMRN2	NM_024756	exon6	c.C851T	p.A284V	AAGTCAGCCCTGG	.	10	3	21	0	.	49
SORBS1	0	bcgsc.ca	37	10	97116445	97116445	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	SORBS1	.	.	.	.	CCAGCCTTTCTTG	.	14	4	26	0	.	185
.	8596	bcgsc.ca	37	11	49920193	49920193	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TTCCAATAATGGG	.	14	5	26	0	.	.
LOC100133315	0	bcgsc.ca	37	11	71614820	71614820	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCTTCACCAGGAA	.	20	4	29	0	.	.
.	0	bcgsc.ca	37	12	48953837	48953837	+	RNA	SNP	C	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GCACCCCTATGTA	.	20	5	36	0	.	.
APAF1	317	bcgsc.ca	37	12	99080607	99080607	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	APAF1	NM_181868	exon16	c.G2260T	p.D754Y	TCACCAGATGATA	.	45	4	61	0	.	111
DNAH10	642797	bcgsc.ca	37	12	124418997	124418997	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	DNAH10	.	.	.	.	CCACAGAGGGAAG	.	37	10	51	0	.	888
ZNF839	55778	bcgsc.ca	37	14	102800980	102800980	+	Translation_Start_Site	SNP	G	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	ZNF839	NM_018335	exon4	c.G1506T	p.M502I	TCTGATGAAGGTG	.	56	4	80	0	.	41
.	0	bcgsc.ca	37	15	78280865	78280865	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	ACACGGGACCTCT	.	30	12	59	0	.	.
CRAMP1L	0	bcgsc.ca	37	16	1675956	1675956	+	Splice_Site	SNP	C	T	T	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CRAMP1L	.	.	.	.	ACTGTACGGTGCT	.	18	3	20	0	.	60
PAPD5	64282	bcgsc.ca	37	16	50248133	50248133	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	PAPD5	NM_001040284	exon4	c.T719A	p.V240D	TTCAGGTCCAGAT	.	55	4	60	0	.	57
.	0	bcgsc.ca	37	16	52289409	52289409	+	RNA	SNP	T	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CGGTTTTTGCCAT	.	139	73	135	0	.	.
.	0	bcgsc.ca	37	16	52289431	52289431	+	RNA	SNP	A	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGGCAAAAACCGC	.	102	28	88	0	.	.
.	0	bcgsc.ca	37	16	52289444	52289444	+	RNA	SNP	T	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AATTACTTTTGCA	.	97	52	123	0	.	.
CTC1	80169	bcgsc.ca	37	17	8140835	8140835	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CTC1	NM_025099	exon5	c.A650T	p.N217I	AGCTTGTTTCTAA	.	17	7	39	0	.	75
CEACAM1	634	bcgsc.ca	37	19	43031434	43031434	+	Missense_Mutation	SNP	T	A	A	rs140316654		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	CEACAM1	NM_001184816	exon2	c.A183T	p.Q61H	AAAAAGTTGCTGG	.	85	5	121	2	.	43
MLLT10P1	140678	bcgsc.ca	37	20	29637850	29637850	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGGATTTCTTTCA	.	68	8	151	4	.	.
.	170529	bcgsc.ca	37	20	49748142	49748142	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GGTTCCTGCTGCA	.	19	9	20	0	.	.
.	3529	bcgsc.ca	37	22	17402464	17402464	+	RNA	SNP	C	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	CCGGTTCAAAACC	.	45	25	55	0	.	.
.	728441	bcgsc.ca	37	22	21563355	21563355	+	Silent	SNP	A	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AGCTGAAGTCGTC	.	135	42	220	0	.	.
.	0	bcgsc.ca	37	X	9147497	9147497	+	RNA	SNP	A	G	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TGAGATAATCACC	.	14	14	19	0	.	.
.	0	bcgsc.ca	37	X	25224509	25224509	+	RNA	SNP	A	C	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	AAAAGTAATTGCG	.	85	40	147	0	.	.
.	0	bcgsc.ca	37	X	52613599	52613599	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	GTGCCAGAGCCTT	.	5	5	13	0	.	.
COL4A5	1287	bcgsc.ca	37	X	107909789	107909789	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	COL4A5	NM_000495	exon39	c.G3518A	p.G1173D	AAGATGGTATTCC	.	25	4	55	0	.	262
MPDZ	8777	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	13190162	13190162	+	Missense_Mutation	SNP	T	T	C	rs4740548	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003829	exon16	c.A2105G	p.E702G	TCCAGCTCTATGT	.	31	20	50	0	.	.
PHF15	23338	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	133887780	133887780	+	Silent	SNP	G	G	T	rs12163993	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_015288	exon4	c.G192T	p.P64P	GATCCCGGACTCA	.	39	11	40	0	.	.
ANKRD30BP2	149992	hgsc.bcm.edu;bcgsc.ca	37	21	14469494	14469495	+	RNA	DNP	GC	GC	TT	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	.	.	.	TAAAAGCTTTGCC	.	70	45	191	1	.	.
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877706	82877707	+	Missense_Mutation	DNP	AA	AA	CC	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	AA	AA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	PCF11_ENST00000298281,NS,carcinoma,0,2	PCF11_ENST00000298281	NM_015885	exon5	c.A1768C	p.QS589HR	TGGCAAAGTTCCA	.	94	37	130	0	.	0
CREM	1390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	35500212	35500213	+	Nonsense_Mutation	DNP	GA	GA	CT	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_183011	exon7	c.A787T	p.KK311N*	AAGAAGAAAGAAT	.	38	11	84	0	.	.
SDR16C5	195814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	57228891	57228892	+	Nonsense_Mutation	DNP	GC	GC	AA	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_138969	exon2	c.G15T	p.Q6*	TGATTGCAGGTTG	.	15	7	27	0	.	.
MGAT5B	146664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74936851	74936852	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_198955	exon13	c.C1797T	p.G599V	CATCGGCAAGCCC	.	23	4	33	0	.	.
EIF3H	8667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	117767993	117767994	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_003756	exon1	c.T43A	p.S29N	AGCTGGAAGAGGT	.	32	11	52	0	.	.
ELN	2006	hgsc.bcm.edu	37	7	73474781	73474782	+	Missense_Mutation	DNP	CT	CT	TC	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_001081754	exon25	c.T1713C	p.A601V	TGGTGCTGGTGTT	.	16	4	31	0	.	.
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95569702	95569703	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	NM_030621	exon22	c.T4030A	p.S1344I	TATATGAAAGGCG	.	27	13	35	0	.	.
KRT85	3891	bcgsc.ca	37	12	52757179	52757180	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	KRT85,NS,carcinoma,-2,1	KRT85	NM_002283	exon5	c.C801A	p.Q268K	GGCTTGGAGAACG	.	20	12	35	1	.	78
C11orf31	280636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57509283	57509283	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.T42S	.	.	CTAGCACTAGCTG	.	45	6	79	0	.	.
GPX2	2877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65406264	65406264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.T172S	.	.	GGGAAGGTGCGGC	.	31	15	42	0	.	.
ZNF274	10782	hgsc.bcm.edu	37	19	58718365	58718365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	ZNF274,NS,carcinoma,0,1	ZNF274	.	p.L178P	.	.	GAGCCCTGGACCA	.	53	4	103	1	.	0
SELT	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	150340940	150340940	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.W120*	.	.	GGCAGTGGGGCCA	.	93	53	101	0	.	.
DNAH11	8701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21630880	21630880	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.L784L	.	.	CCCTCTGATTGAA	.	31	16	71	0	.	.
COPG2	26958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	130147634	130147634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA39-01A-11D-A417-09	TCGA-W5-AA39-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad952427-a9f6-4d9e-9f93-1145909c4a7a	6aa737b3-0e89-415b-b64f-2a66b3a847fc	.	.	.	p.H44Y	.	.	GAATATGGTCAGA	.	16	6	29	0	.	.
