Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ABCC2	1244	broad.mit.edu	36	10	101580541	101580541	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon21	c.C2826T	p.D942D	.	.	.
PKD2L1	9033	broad.mit.edu	36	10	102044389	102044389	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016112	exon9	c.C1552T	p.R518W	.	.	.
DPCD	25911	broad.mit.edu	36	10	103358661	103358661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015448	exon5	c.G484A	p.A162T	.	.	.
FGF8	2253	broad.mit.edu	36	10	103524491	103524491	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033165	exon3	c.G205A	p.G69S	.	.	.
PPRC1	23082	broad.mit.edu	36	10	103897136	103897136	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015062	exon9	c.G4397A	p.R1466Q	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103910352	103910352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004741	exon10	c.C1253T	p.T418M	.	.	.
GBF1	8729	broad.mit.edu	36	10	104129284	104129284	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199378	exon35	c.C4650T	p.C1550C	.	.	.
CUEDC2	79004	broad.mit.edu	36	10	104173282	104173282	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024040	exon9	c.T755C	p.V252A	.	.	.
TMEM180	79847	broad.mit.edu	36	10	104220790	104220790	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024789	exon5	c.C630A	p.A210A	.	.	.
C10orf26	54838	broad.mit.edu	36	10	104562917	104562917	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017787	exon4	c.C868T	p.R290W	.	.	.
ADRA2A	150	broad.mit.edu	36	10	112828865	112828865	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000681	exon1	c.C1121T	p.A374V	.	.	.
C10orf81	79949	broad.mit.edu	36	10	115530368	115530368	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193435	exon11	c.C939T	p.I313I	.	.	.
NHLRC2	374354	broad.mit.edu	36	10	115608343	115608343	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198514	exon2	c.T245C	p.V82A	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115976870	115976870	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198795	exon23	c.A3225T	p.L1075F	.	.	.
VWA2	340706	broad.mit.edu	36	10	116035761	116035761	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198496	exon11	c.C1071T	p.D357D	.	.	.
HSPA12A	259217	broad.mit.edu	36	10	118424709	118424709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025015	exon12	c.C1601T	p.P534L	.	.	.
HSPA12A	259217	broad.mit.edu	36	10	118431305	118431305	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025015	exon8	c.C909T	p.S303S	.	.	.
KCNK18	338567	broad.mit.edu	36	10	118959166	118959166	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181840	exon3	c.G521A	p.R174H	.	.	.
INPP5F	22876	broad.mit.edu	36	10	121559635	121559635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014937	exon14	c.G1603A	p.A535T	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124351378	124351378	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007329	exon29	c.G3419A	p.R1140Q	.	.	.
ADAM12	8038	broad.mit.edu	36	10	127779778	127779778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021641	exon9	c.G773A	p.R258Q	.	.	.
PTPRE	5791	broad.mit.edu	36	10	129759102	129759102	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130435	exon12	c.C1160T	p.T387M	.	.	.
TCERG1L	256536	broad.mit.edu	36	10	132792552	132792552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174937	exon10	c.G1451A	p.R484H	.	.	.
TCERG1L	256536	broad.mit.edu	36	10	132834872	132834872	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174937	exon7	c.A1076T	p.N359I	.	.	.
JAKMIP3	282973	broad.mit.edu	36	10	133811485	133811485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105521	exon13	c.G1789A	p.E597K	.	.	.
KNDC1	85442	broad.mit.edu	36	10	134882412	134882412	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152643	exon27	c.A4765G	p.S1589G	.	.	.
TUBGCP2	10844	broad.mit.edu	36	10	134956702	134956702	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006659	exon7	c.C855T	p.Y285Y	.	.	.
PRAP1	118471	broad.mit.edu	36	10	135015609	135015609	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145202	exon4	c.T237C	p.G79G	.	.	.
CUBN	8029	broad.mit.edu	36	10	17029314	17029314	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon36	c.C5268A	p.D1756E	.	.	.
C10orf140	387640	broad.mit.edu	36	10	21844085	21844085	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207371	exon4	c.C2673T	p.G891G	.	.	.
GPR158	57512	broad.mit.edu	36	10	25927783	25927783	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020752	exon11	c.G3222A	p.W1074X	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28236637	28236637	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018076	exon17	c.C2571T	p.S857S	.	.	.
ZEB1	6935	broad.mit.edu	36	10	31850812	31850812	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174093	exon6	c.C2483T	p.T828M	.	.	.
ARHGAP12	94134	broad.mit.edu	36	10	32237267	32237267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018287	exon3	c.C523T	p.R175C	.	.	.
PARD3	56288	broad.mit.edu	36	10	34670671	34670671	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184787	exon16	c.T2307C	p.L769L	.	.	.
ZNF33B	7582	broad.mit.edu	36	10	42409367	42409367	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006955	exon5	c.G1037A	p.R346Q	.	.	.
BMS1	9790	broad.mit.edu	36	10	42608519	42608519	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014753	exon8	c.C1010T	p.A337V	.	.	.
C10orf25	220979	broad.mit.edu	36	10	44816209	44816209	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039380	exon1	c.C105A	p.S35R	.	.	.
AKR1E2	83592	broad.mit.edu	36	10	4867927	4867927	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040177	exon4	c.C385T	p.R129X	.	.	.
C10orf72	196740	broad.mit.edu	36	10	49955346	49955346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031746	exon4	c.C558T	p.C186C	.	.	.
NCOA4	8031	broad.mit.edu	36	10	51249217	51249217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145261	exon3	c.C118T	p.R40W	.	.	.
AKR1C4	1109	broad.mit.edu	36	10	5245064	5245064	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001818	exon7	c.G788A	p.R263H	.	.	.
FBXO18	84893	broad.mit.edu	36	10	5997390	5997390	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032807	exon10	c.C1568T	p.T523M	.	.	.
FAM13C	220965	broad.mit.edu	36	10	60698440	60698440	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143773	exon9	c.G572A	p.R191H	.	.	.
CCDC6	8030	broad.mit.edu	36	10	61236694	61236694	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005436	exon6	c.C996T	p.D332D	.	.	.
ANK3	288	broad.mit.edu	36	10	61499896	61499896	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon37	c.G10749A	p.T3583T	.	.	.
ANK3	288	broad.mit.edu	36	10	61512398	61512398	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon34	c.C4304A	p.T1435N	.	.	.
ANK3	288	broad.mit.edu	36	10	61629904	61629904	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon13	c.G1480T	p.A494S	.	.	.
RBM17	84991	broad.mit.edu	36	10	6194297	6194297	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032905	exon8	c.G823A	p.G275S	.	.	.
RHOBTB1	9886	broad.mit.edu	36	10	62341295	62341295	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014836	exon3	c.C12T	p.D4D	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7309828	7309828	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029880	exon10	c.C1198T	p.R400X	.	.	.
CDH23	64072	broad.mit.edu	36	10	73125231	73125231	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022124	exon21	c.C2340T	p.D780D	.	.	.
CDH23	64072	broad.mit.edu	36	10	73223367	73223367	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022124	exon46	c.A6676G	p.N2226D	.	.	.
CDH23	64072	broad.mit.edu	36	10	73237280	73237280	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171933	exon12	c.C1590T	p.A530A	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7449789	7449789	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon4	c.G264A	p.P88P	.	.	.
PPP3CB	5532	broad.mit.edu	36	10	74868063	74868063	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142353	exon14	c.T1521C	p.S507S	.	.	.
SYNPO2L	79933	broad.mit.edu	36	10	75076865	75076865	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024875	exon2	c.C1879T	p.R627W	.	.	.
MYST4	23522	broad.mit.edu	36	10	76459775	76459775	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012330	exon18	c.C5187T	p.S1729S	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7805509	7805509	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002216	exon9	c.C957T	p.G319G	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78321313	78321313	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161353	exon26	c.C3267T	p.L1089L	.	.	.
C10orf58	84293	broad.mit.edu	36	10	82170323	82170323	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032333	exon2	c.G120A	p.K40K	.	.	.
CDHR1	92211	broad.mit.edu	36	10	85952803	85952803	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171971	exon8	c.G727T	p.A243S	.	.	.
GRID1	2894	broad.mit.edu	36	10	87397068	87397068	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017551	exon13	c.T2064C	p.Y688Y	.	.	.
LIPN	643418	broad.mit.edu	36	10	90524213	90524213	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102469	exon7	c.C823T	p.R275X	.	.	.
LIPN	643418	broad.mit.edu	36	10	90527789	90527789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102469	exon9	c.C1007T	p.T336I	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93242193	93242193	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182765	exon13	c.A1404G	p.L468L	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97182268	97182268	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034957	exon3	c.G132A	p.S44S	.	.	.
ALDH18A1	5832	broad.mit.edu	36	10	97356604	97356604	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017423	exon18	c.C2287T	p.R763X	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98813266	98813266	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003061	exon8	c.G729A	p.S243S	.	.	.
ZDHHC16	84287	broad.mit.edu	36	10	99206537	99206537	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198043	exon10	c.C985T	p.R329W	.	.	.
AVPI1	60370	broad.mit.edu	36	10	99429492	99429492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021732	exon2	c.G161A	p.R54Q	.	.	.
FAM21B	55747	broad.mit.edu	36	10	47461992	47461992	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018232	exon24	c.2449delA	p.K817fs	.	.	.
TRPC6	7225	broad.mit.edu	36	11	100880386	100880386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004621	exon2	c.G524A	p.R175Q	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102491133	102491133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon4	c.G520A	p.D174N	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102575387	102575387	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon49	c.T8060C	p.L2687P	.	.	.
DDI1	414301	broad.mit.edu	36	11	103413584	103413584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001711	exon1	c.G824A	p.R275Q	.	.	.
ATM	472	broad.mit.edu	36	11	107723246	107723246	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon59	c.A8615G	p.H2872R	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107887688	107887688	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015065	exon6	c.A3756G	p.I1252M	.	.	.
C11orf87	399947	broad.mit.edu	36	11	108800063	108800063	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207645	exon2	c.C494T	p.P165L	.	.	.
HTR3A	3359	broad.mit.edu	36	11	113353816	113353816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000869	exon2	c.G199A	p.V67I	.	.	.
CEP164	22897	broad.mit.edu	36	11	116770399	116770399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014956	exon21	c.C2740T	p.R914W	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118278595	118278595	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182557	exon6	c.C1067T	p.P356L	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118279186	118279186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182557	exon4	c.G718A	p.V240I	.	.	.
PVRL1	5818	broad.mit.edu	36	11	119040675	119040675	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002855	exon6	c.T1546C	p.Y516H	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120250080	120250080	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon8	c.C1002A	p.S334S	.	.	.
SORL1	6653	broad.mit.edu	36	11	120984083	120984083	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003105	exon38	c.A5227T	p.I1743L	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1217725	1217725	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002458	exon28	c.C3704A	p.P1235H	.	.	.
C11orf63	79864	broad.mit.edu	36	11	122262072	122262072	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024806	exon2	c.A305T	p.E102V	.	.	.
ASAM	79827	broad.mit.edu	36	11	122449485	122449485	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024769	exon7	c.T1029C	p.S343S	.	.	.
ASAM	79827	broad.mit.edu	36	11	122449666	122449666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024769	exon7	c.G848A	p.R283H	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133307198	133307198	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014987	exon8	c.G1088A	p.G363D	.	.	.
ACAD8	27034	broad.mit.edu	36	11	133632269	133632269	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014384	exon3	c.C288T	p.G96G	.	.	.
PDE3B	5140	broad.mit.edu	36	11	14822133	14822133	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000922	exon12	c.T2505C	p.A835A	.	.	.
PLEKHA7	144100	broad.mit.edu	36	11	16769211	16769211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175058	exon20	c.G2857A	p.V953M	.	.	.
NELL1	4745	broad.mit.edu	36	11	21349064	21349064	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006157	exon15	c.G1639A	p.E547K	.	.	.
LGR4	55366	broad.mit.edu	36	11	27363557	27363557	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018490	exon5	c.G436A	p.E146K	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990128	29990128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002233	exon2	c.G674A	p.R225H	.	.	.
OSBPL5	114879	broad.mit.edu	36	11	3085631	3085631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145638	exon7	c.C608T	p.S203L	.	.	.
IMMP1L	196294	broad.mit.edu	36	11	31411649	31411649	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144981	exon6	c.T366A	p.N122K	.	.	.
CAPRIN1	4076	broad.mit.edu	36	11	34054582	34054582	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203364	exon5	c.G590A	p.R197Q	.	.	.
PAMR1	25891	broad.mit.edu	36	11	35414251	35414251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001991	exon9	c.C1109T	p.P370L	.	.	.
NUP98	4928	broad.mit.edu	36	11	3673320	3673320	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139132	exon26	c.C4102A	p.L1368I	.	.	.
ACCS	84680	broad.mit.edu	36	11	44061616	44061616	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032592	exon14	c.C1321A	p.L441M	.	.	.
PRDM11	56981	broad.mit.edu	36	11	45202620	45202620	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020229	exon8	c.A1121C	p.D374A	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628269	45628269	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003654	exon4	c.G781A	p.G261R	.	.	.
OR52I2	143502	broad.mit.edu	36	11	4564915	4564915	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005170	exon1	c.G297T	p.V99V	.	.	.
DGKZ	8525	broad.mit.edu	36	11	46349633	46349633	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003646	exon8	c.C663T	p.C221C	.	.	.
AMBRA1	55626	broad.mit.edu	36	11	46521075	46521075	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017749	exon8	c.G798A	p.S266S	.	.	.
OR51E2	81285	broad.mit.edu	36	11	4660147	4660147	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030774	exon2	c.C371T	p.A124V	.	.	.
PTPMT1	114971	broad.mit.edu	36	11	47549657	47549657	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143984	exon2	c.T423A	p.H141Q	.	.	.
OR52R1	119695	broad.mit.edu	36	11	4781329	4781329	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005177	exon1	c.A858G	p.I286M	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5177669	5177669	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004760	exon1	c.G838A	p.V280M	.	.	.
OR52H1	390067	broad.mit.edu	36	11	5522708	5522708	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005289	exon1	c.T622C	p.F208L	.	.	.
SPRYD5	84767	broad.mit.edu	36	11	55413994	55413994	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032681	exon6	c.G762A	p.R254R	.	.	.
OR8K5	219453	broad.mit.edu	36	11	55683938	55683938	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004058	exon1	c.G432A	p.L144L	.	.	.
OR8H1	219469	broad.mit.edu	36	11	55815071	55815071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005199	exon1	c.C44T	p.T15M	.	.	.
CTNND1	1500	broad.mit.edu	36	11	57318120	57318120	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001331	exon4	c.C258T	p.N86N	.	.	.
ZFP91	80829	broad.mit.edu	36	11	58134013	58134013	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053023	exon3	c.C505T	p.R169X	.	.	.
SDHAF2	54949	broad.mit.edu	36	11	60970078	60970078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017841	exon4	c.C460T	p.R154C	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62046429	62046429	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.C12036A	p.G4012G	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62054972	62054972	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.G3493A	p.E1165K	.	.	.
TAF6L	10629	broad.mit.edu	36	11	62302026	62302026	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006473	exon4	c.G235A	p.A79T	.	.	.
NXF1	10482	broad.mit.edu	36	11	62324522	62324522	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006362	exon10	c.C919T	p.R307W	.	.	.
SLC22A6	9356	broad.mit.edu	36	11	62501253	62501253	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004790	exon9	c.C1544T	p.T515M	.	.	.
STIP1	10963	broad.mit.edu	36	11	63727573	63727573	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006819	exon13	c.C1462T	p.R488X	.	.	.
HPX	3263	broad.mit.edu	36	11	6418701	6418701	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000613	exon1	c.C69A	p.A23A	.	.	.
ATG2A	23130	broad.mit.edu	36	11	64426205	64426205	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015104	exon29	c.G3924A	p.A1308A	.	.	.
ATG2A	23130	broad.mit.edu	36	11	64441046	64441046	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015104	exon1	c.C138A	p.S46R	.	.	.
NAALADL1	10004	broad.mit.edu	36	11	64581434	64581434	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005468	exon4	c.A588G	p.V196V	.	.	.
DPF2	5977	broad.mit.edu	36	11	64868058	64868058	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006268	exon6	c.C579T	p.A193A	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6489201	6489201	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144666	exon7	c.G1358A	p.R453H	.	.	.
EFEMP2	30008	broad.mit.edu	36	11	65395339	65395339	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016938	exon4	c.T232C	p.Y78H	.	.	.
FIBP	9158	broad.mit.edu	36	11	65409036	65409036	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004214	exon7	c.C765T	p.C255C	.	.	.
PACS1	55690	broad.mit.edu	36	11	65757035	65757035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018026	exon15	c.G1760A	p.R587Q	.	.	.
KLC2	64837	broad.mit.edu	36	11	65786956	65786956	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134775	exon5	c.G625A	p.A209T	.	.	.
KLC2	64837	broad.mit.edu	36	11	65787083	65787083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134775	exon5	c.G752A	p.R251Q	.	.	.
RAB1B	81876	broad.mit.edu	36	11	65800193	65800193	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030981	exon6	c.C514T	p.R172W	.	.	.
PELI3	246330	broad.mit.edu	36	11	65995383	65995383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145065	exon4	c.G319A	p.V107I	.	.	.
PELI3	246330	broad.mit.edu	36	11	65997787	65997787	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145065	exon7	c.C655T	p.R219X	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6606549	6606549	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003737	exon13	c.C5250A	p.T1750T	.	.	.
PC	5091	broad.mit.edu	36	11	66376563	66376563	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040716	exon15	c.G1748A	p.R583H	.	.	.
DEAF1	10522	broad.mit.edu	36	11	664719	664719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021008	exon10	c.G1320A	p.A440A	.	.	.
KDM2A	22992	broad.mit.edu	36	11	66769436	66769436	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012308	exon14	c.C1764T	p.C588C	.	.	.
CHKA	1119	broad.mit.edu	36	11	67594269	67594269	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212469	exon5	c.C778T	p.L260F	.	.	.
SUV420H1	51111	broad.mit.edu	36	11	67682130	67682130	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017635	exon11	c.C2259T	p.N753N	.	.	.
LRP5	4041	broad.mit.edu	36	11	67957707	67957707	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002335	exon18	c.C3825T	p.P1275P	.	.	.
IGHMBP2	3508	broad.mit.edu	36	11	68439011	68439011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002180	exon6	c.C856T	p.R286W	.	.	.
ZNF214	7761	broad.mit.edu	36	11	6978153	6978153	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013249	exon3	c.A1337G	p.D446G	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7024486	7024486	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176822	exon5	c.G1970A	p.R657H	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72091750	72091750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040118	exon15	c.C2015T	p.T672I	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72099116	72099116	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040118	exon10	c.G1378A	p.V460M	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72099832	72099832	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040118	exon9	c.C1095T	p.D365D	.	.	.
ATG16L2	89849	broad.mit.edu	36	11	72217578	72217578	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033388	exon17	c.C1673T	p.P558L	.	.	.
P2RY2	5029	broad.mit.edu	36	11	72623382	72623382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176072	exon3	c.G530A	p.R177H	.	.	.
RAB6A	5870	broad.mit.edu	36	11	73066646	73066646	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198896	exon8	c.T572C	p.I191T	.	.	.
PPME1	51400	broad.mit.edu	36	11	73593137	73593137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016147	exon3	c.C287T	p.T96M	.	.	.
PPME1	51400	broad.mit.edu	36	11	73634832	73634832	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016147	exon10	c.G898A	p.G300S	.	.	.
ARRB1	408	broad.mit.edu	36	11	74662826	74662826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020251	exon11	c.G854A	p.R285Q	.	.	.
PRKRIR	5612	broad.mit.edu	36	11	75741186	75741186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004705	exon5	c.G656A	p.R219Q	.	.	.
CAPN5	726	broad.mit.edu	36	11	76511318	76511318	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004055	exon12	c.C1652T	p.S551L	.	.	.
THRSP	7069	broad.mit.edu	36	11	77452803	77452803	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003251	exon1	c.G228A	p.P76P	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78058242	78058242	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon32	c.G6796A	p.G2266S	.	.	.
TUB	7275	broad.mit.edu	36	11	8078668	8078668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177972	exon10	c.G1159A	p.V387M	.	.	.
PCF11	51585	broad.mit.edu	36	11	82552518	82552518	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon3	c.G468A	p.T156T	.	.	.
NOX4	50507	broad.mit.edu	36	11	88746259	88746259	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016931	exon12	c.G1124A	p.G375E	.	.	.
NOX4	50507	broad.mit.edu	36	11	88824659	88824659	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016931	exon3	c.G206T	p.S69I	.	.	.
MTNR1B	4544	broad.mit.edu	36	11	92354623	92354623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005959	exon2	c.G586A	p.A196T	.	.	.
IPO7	10527	broad.mit.edu	36	11	9388204	9388204	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006391	exon4	c.T474A	p.N158K	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99569464	99569464	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175566	exon14	c.A1521C	p.T507T	.	.	.
RELA	5970	broad.mit.edu	36	11	65178548	65178548	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021975	exon11	c.1533delC	p.P511fs	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100549992	100549992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002465	exon8	c.C501T	p.C167C	.	.	.
OLR1	4973	broad.mit.edu	36	12	10204270	10204270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002543	exon5	c.G623A	p.R208Q	.	.	.
NUAK1	9891	broad.mit.edu	36	12	105004668	105004668	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014840	exon3	c.G487A	p.V163I	.	.	.
CKAP4	10970	broad.mit.edu	36	12	105157553	105157553	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006825	exon2	c.G1188A	p.S396S	.	.	.
STYK1	55359	broad.mit.edu	36	12	10664188	10664188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018423	exon11	c.G1091A	p.R364H	.	.	.
ACACB	32	broad.mit.edu	36	12	108089087	108089087	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon2	c.G692A	p.R231Q	.	.	.
ACACB	32	broad.mit.edu	36	12	108176421	108176421	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon43	c.C6065A	p.P2022H	.	.	.
ACACB	32	broad.mit.edu	36	12	108182677	108182677	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon47	c.A6506G	p.D2169G	.	.	.
HVCN1	84329	broad.mit.edu	36	12	109573496	109573496	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032369	exon6	c.C552T	p.L184L	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111094892	111094892	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon66	c.G11235A	p.A3745A	.	.	.
SDS	10993	broad.mit.edu	36	12	112319438	112319438	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006843	exon6	c.G568A	p.V190I	.	.	.
SDSL	113675	broad.mit.edu	36	12	112350291	112350291	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138432	exon3	c.G121A	p.V41M	.	.	.
FBXO21	23014	broad.mit.edu	36	12	116099805	116099805	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015002	exon4	c.C495T	p.Y165Y	.	.	.
KSR2	283455	broad.mit.edu	36	12	116480728	116480728	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173598	exon8	c.C1272T	p.A424A	.	.	.
VSIG10	54621	broad.mit.edu	36	12	116990679	116990679	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019086	exon8	c.C1453T	p.R485C	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118047598	118047598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194286	exon7	c.G545A	p.R182H	.	.	.
BCL7A	605	broad.mit.edu	36	12	120953051	120953051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020993	exon2	c.C155T	p.T52M	.	.	.
IL31	386653	broad.mit.edu	36	12	121224421	121224421	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014336	exon2	c.C88T	p.R30C	.	.	.
LRRC43	254050	broad.mit.edu	36	12	121241959	121241959	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098519	exon6	c.G981A	p.P327P	.	.	.
VPS33A	65082	broad.mit.edu	36	12	121301489	121301489	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022916	exon5	c.C594T	p.C198C	.	.	.
LRP6	4040	broad.mit.edu	36	12	12193273	12193273	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002336	exon14	c.C3076T	p.R1026C	.	.	.
ABCB9	23457	broad.mit.edu	36	12	121985898	121985898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019624	exon9	c.G1648A	p.A550T	.	.	.
MPHOSPH9	10198	broad.mit.edu	36	12	122253220	122253220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022782	exon6	c.C1229T	p.S410L	.	.	.
C12orf65	91574	broad.mit.edu	36	12	122304441	122304441	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194995	exon2	c.A267G	p.S89S	.	.	.
SETD8	387893	broad.mit.edu	36	12	122441196	122441196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020382	exon3	c.C199T	p.R67C	.	.	.
SETD8	387893	broad.mit.edu	36	12	122455424	122455424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020382	exon7	c.C698T	p.T233I	.	.	.
DHX37	57647	broad.mit.edu	36	12	124025965	124025965	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032656	exon6	c.C933T	p.A311A	.	.	.
SLC15A4	121260	broad.mit.edu	36	12	127844734	127844734	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145648	exon8	c.G1694A	p.R565Q	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128751005	128751005	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon2	c.C271T	p.P91S	.	.	.
GPRC5A	9052	broad.mit.edu	36	12	12952538	12952538	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003979	exon2	c.G88A	p.V30I	.	.	.
STX2	2054	broad.mit.edu	36	12	129857515	129857515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194356	exon6	c.G428A	p.R143Q	.	.	.
SFSWAP	6433	broad.mit.edu	36	12	130770028	130770028	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004592	exon4	c.C597T	p.D199D	.	.	.
MMP17	4326	broad.mit.edu	36	12	130891152	130891152	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016155	exon4	c.C504T	p.S168S	.	.	.
EP400	57634	broad.mit.edu	36	12	131011145	131011145	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon2	c.G28A	p.V10I	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14468184	14468184	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018179	exon2	c.G68A	p.R23H	.	.	.
FBXL14	144699	broad.mit.edu	36	12	1572733	1572733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152441	exon1	c.G761A	p.S254N	.	.	.
RERGL	79785	broad.mit.edu	36	12	18128730	18128730	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024730	exon5	c.G323A	p.S108N	.	.	.
SLC6A13	6540	broad.mit.edu	36	12	202007	202007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190997	exon11	c.G1191T	p.W397C	.	.	.
LST-3TM12	338821	broad.mit.edu	36	12	21087748	21087748	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009562	exon6	c.G800A	p.R267Q	.	.	.
LST-3TM12	338821	broad.mit.edu	36	12	21092973	21092973	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009562	exon8	c.A1055G	p.K352R	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21268937	21268937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006446	exon14	c.C1762T	p.P588S	.	.	.
KCNJ8	3764	broad.mit.edu	36	12	21810391	21810391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004982	exon3	c.G808A	p.V270M	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon2	c.G38A	p.G13D	 KRAS,lung,NS,Substitution - Missense,-1 	.	.
C12orf71	728858	broad.mit.edu	36	12	27126478	27126478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080406	exon1	c.G206A	p.R69H	.	.	.
SLC38A1	81539	broad.mit.edu	36	12	44878727	44878727	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077484	exon14	c.G1070T	p.R357L	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4606434	4606434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006422	exon4	c.C1895T	p.P632L	.	.	.
RAPGEF3	10411	broad.mit.edu	36	12	46417640	46417640	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098532	exon27	c.C2623A	p.L875I	.	.	.
HDAC7	51564	broad.mit.edu	36	12	46478905	46478905	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098416	exon3	c.G188A	p.R63H	.	.	.
WNT10B	7480	broad.mit.edu	36	12	47646412	47646412	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003394	exon5	c.C903A	p.P301P	.	.	.
WNT10B	7480	broad.mit.edu	36	12	47646483	47646483	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003394	exon5	c.C832T	p.R278W	.	.	.
MLL2	8085	broad.mit.edu	36	12	47713534	47713534	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon39	c.C11221T	p.Q3741X	.	.	.
MLL2	8085	broad.mit.edu	36	12	47734147	47734147	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon5	c.G554A	p.R185H	.	.	.
BCDIN3D	144233	broad.mit.edu	36	12	48518891	48518891	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181708	exon2	c.A409G	p.M137V	.	.	.
FAIM2	23017	broad.mit.edu	36	12	48570738	48570738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012306	exon7	c.G520A	p.V174I	.	.	.
RACGAP1	29127	broad.mit.edu	36	12	48686500	48686500	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013277	exon5	c.C272A	p.A91D	.	.	.
GALNT6	11226	broad.mit.edu	36	12	50040790	50040790	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007210	exon7	c.C1149T	p.N383N	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50664187	50664187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020327	exon5	c.C793T	p.H265Y	.	.	.
KRT85	3891	broad.mit.edu	36	12	51045036	51045036	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002283	exon2	c.G606T	p.E202D	.	.	.
KRT82	3888	broad.mit.edu	36	12	51085935	51085935	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033033	exon1	c.G394A	p.A132T	.	.	.
KRT71	112802	broad.mit.edu	36	12	51227995	51227995	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033448	exon6	c.C1017T	p.D339D	.	.	.
KRT71	112802	broad.mit.edu	36	12	51233121	51233121	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033448	exon1	c.G8A	p.R3H	.	.	.
KRT79	338785	broad.mit.edu	36	12	51503170	51503170	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175834	exon7	c.C1264A	p.L422M	.	.	.
TARBP2	6895	broad.mit.edu	36	12	52184843	52184843	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004178	exon6	c.G527A	p.R176Q	.	.	.
HOXC4	3221	broad.mit.edu	36	12	52734207	52734207	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014620	exon3	c.G234A	p.S78S	.	.	.
NFE2	4778	broad.mit.edu	36	12	52972753	52972753	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136023	exon3	c.C794T	p.A265V	.	.	.
MMP19	4327	broad.mit.edu	36	12	54519598	54519598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002429	exon5	c.C715T	p.P239S	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55285911	55285911	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013449	exon13	c.G2469A	p.P823P	.	.	.
NAB2	4665	broad.mit.edu	36	12	55772999	55772999	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005967	exon4	c.T1124C	p.L375P	.	.	.
GLI1	2735	broad.mit.edu	36	12	56147475	56147475	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160045	exon7	c.C621T	p.H207H	.	.	.
MBD6	114785	broad.mit.edu	36	12	56206118	56206118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052897	exon6	c.G1100A	p.R367H	.	.	.
KIF5A	3798	broad.mit.edu	36	12	56252716	56252716	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004984	exon15	c.C1656T	p.N552N	.	.	.
OS9	10956	broad.mit.edu	36	12	56400872	56400872	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017958	exon15	c.G1872A	p.R624R	.	.	.
FAM119B	25895	broad.mit.edu	36	12	56460522	56460522	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015433	exon3	c.G507A	p.L169L	.	.	.
PPM1H	57460	broad.mit.edu	36	12	61328651	61328651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020700	exon10	c.G1430A	p.R477H	.	.	.
CD9	928	broad.mit.edu	36	12	6217232	6217232	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001769	exon8	c.C664T	p.R222C	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62807724	62807724	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020762	exon20	c.G2493T	p.K831N	.	.	.
TBK1	29110	broad.mit.edu	36	12	63160144	63160144	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013254	exon7	c.A787G	p.M263V	.	.	.
DYRK2	8445	broad.mit.edu	36	12	66338007	66338007	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003583	exon2	c.C834T	p.P278P	.	.	.
KCNMB4	27345	broad.mit.edu	36	12	69080308	69080308	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014505	exon2	c.T389G	p.V130G	.	.	.
C1RL	51279	broad.mit.edu	36	12	7140786	7140786	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016546	exon6	c.C807T	p.G269G	.	.	.
CLSTN3	9746	broad.mit.edu	36	12	7187074	7187074	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014718	exon12	c.G1747A	p.V583M	.	.	.
PEX5	5830	broad.mit.edu	36	12	7242968	7242968	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001131024	exon6	c.C543T	p.T181T	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73887671	73887671	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139137	exon2	c.C360T	p.T120T	.	.	.
OSBPL8	114882	broad.mit.edu	36	12	75310568	75310568	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020841	exon10	c.G853A	p.V285I	.	.	.
E2F7	144455	broad.mit.edu	36	12	75947805	75947805	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203394	exon10	c.G1821A	p.E607E	.	.	.
NAV3	89795	broad.mit.edu	36	12	76968789	76968789	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon11	c.G2247A	p.P749P	.	.	.
NAV3	89795	broad.mit.edu	36	12	77039981	77039981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon16	c.G3880A	p.G1294S	.	.	.
FAM90A1	55138	broad.mit.edu	36	12	8268574	8268574	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018088	exon4	c.G122T	p.R41M	.	.	.
WNK1	65125	broad.mit.edu	36	12	838785	838785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184985	exon6	c.G1514A	p.R505H	.	.	.
WNK1	65125	broad.mit.edu	36	12	840623	840623	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184985	exon7	c.G1804T	p.G602X	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88538115	88538115	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001323	exon10	c.G1621A	p.V541I	.	.	.
LUM	4060	broad.mit.edu	36	12	90022101	90022101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002345	exon3	c.G989A	p.R330H	.	.	.
C12orf74	338809	broad.mit.edu	36	12	91624712	91624712	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037671	exon2	c.C174T	p.G58G	.	.	.
NTN4	59277	broad.mit.edu	36	12	94601618	94601618	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021229	exon6	c.C1181T	p.P394L	.	.	.
ELK3	2004	broad.mit.edu	36	12	95141480	95141480	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005230	exon2	c.A5T	p.E2V	.	.	.
GAS2L3	283431	broad.mit.edu	36	12	99529969	99529969	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174942	exon6	c.C364T	p.R122W	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29560654	29560654	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193451	exon15	c.2202delA	p.K734fs	.	.	.
NALCN	259232	broad.mit.edu	36	13	100533218	100533218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon33	c.G3708A	p.P1236P	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102257805	102257805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017693	exon3	c.C187T	p.R63W	.	.	.
DAOA	267012	broad.mit.edu	36	13	104922955	104922955	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161812	exon3	c.C8T	p.T3M	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109616590	109616590	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001845	exon45	c.G4011A	p.P1337P	.	.	.
ATP11A	23250	broad.mit.edu	36	13	112487519	112487519	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015205	exon2	c.G109A	p.A37T	.	.	.
MCF2L	23263	broad.mit.edu	36	13	112783528	112783528	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024979	exon16	c.G1821A	p.R607R	.	.	.
FAM70B	348013	broad.mit.edu	36	13	113609281	113609281	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182614	exon7	c.C546T	p.G182G	.	.	.
PSPC1	55269	broad.mit.edu	36	13	19177843	19177843	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042414	exon8	c.G1345A	p.A449T	.	.	.
TNFRSF19	55504	broad.mit.edu	36	13	23140862	23140862	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148957	exon9	c.A871G	p.T291A	.	.	.
RASL11A	387496	broad.mit.edu	36	13	26745385	26745385	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206827	exon4	c.C483T	p.D161D	.	.	.
LNX2	222484	broad.mit.edu	36	13	27025556	27025556	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153371	exon8	c.A1567G	p.N523D	.	.	.
FRY	10129	broad.mit.edu	36	13	31645532	31645532	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon19	c.T2180A	p.I727N	.	.	.
STARD13	90627	broad.mit.edu	36	13	32602196	32602196	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178006	exon5	c.C618T	p.S206S	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35674096	35674096	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017826	exon2	c.T183C	p.D61D	.	.	.
SMAD9	4093	broad.mit.edu	36	13	36325645	36325645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005905	exon5	c.G1060A	p.A354T	.	.	.
POSTN	10631	broad.mit.edu	36	13	37052761	37052761	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135934	exon11	c.G1466A	p.R489H	.	.	.
POSTN	10631	broad.mit.edu	36	13	37056993	37056993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135934	exon8	c.C968T	p.T323M	.	.	.
SLC25A15	10166	broad.mit.edu	36	13	40279542	40279542	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014252	exon5	c.G565T	p.G189C	.	.	.
ELF1	1997	broad.mit.edu	36	13	40405962	40405962	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172373	exon9	c.C1459T	p.Q487X	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45457531	45457531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015070	exon10	c.C1622T	p.T541M	.	.	.
FAM124A	220108	broad.mit.edu	36	13	50723616	50723616	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145019	exon4	c.G220A	p.V74I	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51502738	51502738	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021645	exon2	c.T1797G	p.A599A	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57107100	57107101	+	Missense_Mutation	DNP	AG	TA	TA	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040429	exon1	c.2419_2420TA	.	.	.	.
C13orf34	79866	broad.mit.edu	36	13	72218710	72218710	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024808	exon10	c.G942A	p.P314P	.	.	.
LMO7	4008	broad.mit.edu	36	13	75295792	75295792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015842	exon12	c.G2032A	p.A678T	.	.	.
LMO7	4008	broad.mit.edu	36	13	75321371	75321371	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015842	exon24	c.C3607T	p.R1203X	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85268452	85268452	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032229	exon2	c.C193T	p.R65X	.	.	.
GPR180	160897	broad.mit.edu	36	13	94077296	94077296	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_180989	exon9	c.A1193G	p.Q398R	.	.	.
ABCC4	10257	broad.mit.edu	36	13	94659753	94659753	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105515	exon6	c.A721G	p.M241V	.	.	.
MBNL2	10150	broad.mit.edu	36	13	96797178	96797178	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207304	exon5	c.T660A	p.D220E	.	.	.
MBNL2	10150	broad.mit.edu	36	13	96807824	96807824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207304	exon6	c.G892A	p.V298I	.	.	.
TM9SF2	9375	broad.mit.edu	36	13	98970323	98970323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004800	exon3	c.G272A	p.R91H	.	.	.
CLYBL	171425	broad.mit.edu	36	13	99316551	99316551	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206808	exon6	c.G691A	p.V231I	.	.	.
PCDH8	5100	broad.mit.edu	36	13	52320447	52320447	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032949	exon1	c.126delC	p.P42fs	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101533325	101533325	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon16	c.C3765T	p.T1255T	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101548542	101548542	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon34	c.C6996T	p.R2332R	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101578191	101578191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon66	c.C12191T	p.T4064M	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101586624	101586624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon78	c.C13912T	p.R4638W	.	.	.
WDR20	91833	broad.mit.edu	36	14	101745052	101745052	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181291	exon3	c.C792T	p.G264G	.	.	.
ZNF839	55778	broad.mit.edu	36	14	101875310	101875310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018335	exon7	c.G1924A	p.A642T	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102422306	102422306	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145725	exon7	c.G598A	p.V200M	.	.	.
OR4K15	81127	broad.mit.edu	36	14	19513855	19513855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005486	exon1	c.G338A	p.R113H	.	.	.
SUPT16H	11198	broad.mit.edu	36	14	20900283	20900283	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007192	exon15	c.G1706A	p.R569Q	.	.	.
ACIN1	22985	broad.mit.edu	36	14	22600199	22600199	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164816	exon11	c.G1452T	p.L484L	.	.	.
MYH6	4624	broad.mit.edu	36	14	22921519	22921519	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002471	exon38	c.G5754T	p.Q1918H	.	.	.
NGDN	25983	broad.mit.edu	36	14	23015404	23015404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015514	exon8	c.C661T	p.R221C	.	.	.
THTPA	79178	broad.mit.edu	36	14	23096138	23096138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024328	exon1	c.G332A	p.G111D	.	.	.
JPH4	84502	broad.mit.edu	36	14	23110506	23110506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032452	exon6	c.G1274A	p.R425H	.	.	.
LRRC16B	90668	broad.mit.edu	36	14	23593481	23593481	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138360	exon5	c.C283T	p.R95X	.	.	.
TM9SF1	10548	broad.mit.edu	36	14	23728466	23728466	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006405	exon6	c.G1816A	p.D606N	.	.	.
TGM1	7051	broad.mit.edu	36	14	23798815	23798815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000359	exon6	c.C919T	p.R307W	.	.	.
KHNYN	23351	broad.mit.edu	36	14	23969935	23969935	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015299	exon2	c.G159A	p.W53X	.	.	.
SDR39U1	56948	broad.mit.edu	36	14	23979298	23979298	+	Missense_Mutation	SNP	C	T	T	rs35580864	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020195	exon6	c.G713A	p.R238H	.	.	.
CTSG	1511	broad.mit.edu	36	14	24113340	24113340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001911	exon4	c.G545A	p.R182Q	.	.	.
SLC25A21	89874	broad.mit.edu	36	14	36711303	36711303	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171170	exon1	c.T4A	p.S2T	.	.	.
RPL10L	140801	broad.mit.edu	36	14	46190670	46190670	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080746	exon1	c.G20A	p.R7H	.	.	.
TMX1	81542	broad.mit.edu	36	14	50780413	50780413	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030755	exon2	c.C242T	p.A81V	.	.	.
CNIH	10175	broad.mit.edu	36	14	53968631	53968631	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005776	exon3	c.G208A	p.A70T	.	.	.
SAMD4A	23034	broad.mit.edu	36	14	54312912	54312912	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015589	exon10	c.A1945G	p.N649D	.	.	.
WDHD1	11169	broad.mit.edu	36	14	54499541	54499541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007086	exon19	c.C2410T	p.R804W	.	.	.
KTN1	3895	broad.mit.edu	36	14	55198021	55198021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004986	exon32	c.G3028A	p.G1010S	.	.	.
SLC35F4	341880	broad.mit.edu	36	14	57125905	57125905	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080455	exon3	c.C477A	p.S159S	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57900919	57900919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023000	exon20	c.G2359A	p.E787K	.	.	.
SIX4	51804	broad.mit.edu	36	14	60256252	60256252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017420	exon2	c.G1528A	p.V510M	.	.	.
SYT16	83851	broad.mit.edu	36	14	61617638	61617638	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031914	exon4	c.A1327T	p.M443L	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62386228	62386228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172376	exon8	c.C1291T	p.R431W	.	.	.
MTHFD1	4522	broad.mit.edu	36	14	63978567	63978567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005956	exon20	c.G1927A	p.A643T	.	.	.
ZBTB1	22890	broad.mit.edu	36	14	64058914	64058914	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014950	exon2	c.C939T	p.S313S	.	.	.
MAX	4149	broad.mit.edu	36	14	64613132	64613132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145112	exon4	c.C271T	p.R91C	.	.	.
GPHN	10243	broad.mit.edu	36	14	66416432	66416432	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024218	exon5	c.G317A	p.R106Q	.	.	.
ARG2	384	broad.mit.edu	36	14	67156518	67156518	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172	exon1	c.A71C	p.H24P	.	.	.
ACTN1	87	broad.mit.edu	36	14	68416434	68416434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130005	exon18	c.C2278T	p.R760W	.	.	.
SLC8A3	6547	broad.mit.edu	36	14	69582546	69582546	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033262	exon8	c.G2649A	p.P883P	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71209044	71209044	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015556	exon9	c.C3056T	p.T1019M	.	.	.
RGS6	9628	broad.mit.edu	36	14	72031709	72031709	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004296	exon13	c.G951T	p.W317C	.	.	.
DCAF4	26094	broad.mit.edu	36	14	72474460	72474460	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181341	exon2	c.G21T	p.Q7H	.	.	.
RBM25	58517	broad.mit.edu	36	14	72608197	72608197	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021239	exon2	c.C95A	p.P32H	.	.	.
HEATR4	399671	broad.mit.edu	36	14	73058972	73058972	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203309	exon2	c.G497A	p.R166H	.	.	.
PNMA1	9240	broad.mit.edu	36	14	73249751	73249751	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006029	exon1	c.C345T	p.T115T	.	.	.
TMEM63C	57156	broad.mit.edu	36	14	76787986	76787986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020431	exon22	c.G2140A	p.D714N	.	.	.
GSTZ1	2954	broad.mit.edu	36	14	76860970	76860970	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145871	exon2	c.T20A	p.I7N	.	.	.
ZC3H14	79882	broad.mit.edu	36	14	88139101	88139101	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160104	exon12	c.A1691C	p.Q564P	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90836040	90836040	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080414	exon21	c.C3763T	p.R1255W	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90849263	90849263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080414	exon15	c.G2650A	p.G884S	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90879708	90879708	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080414	exon5	c.C387T	p.G129G	.	.	.
TCL1B	9623	broad.mit.edu	36	14	95226952	95226952	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004918	exon2	c.C289T	p.R97X	.	.	.
BDKRB2	624	broad.mit.edu	36	14	95777299	95777299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000623	exon3	c.C881T	p.T294M	.	.	.
SETD3	84193	broad.mit.edu	36	14	98936247	98936247	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032233	exon12	c.G1280A	p.W427X	.	.	.
EML1	2009	broad.mit.edu	36	14	99433296	99433296	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008707	exon8	c.G796A	p.V266I	.	.	.
ARHGAP5	394	broad.mit.edu	36	14	31632296	31632296	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001030055	exon2	c.2670delT	p.D890fs	.	.	.
GOLGA6L1	283767	broad.mit.edu	36	15	20294495	20294495	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001413	exon8	c.G1516A	p.D506N	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22473117	22473117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018958	exon1	c.C1010T	p.P337L	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23510205	23510205	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024490	exon10	c.C2053T	p.Q685X	.	.	.
HERC2	8924	broad.mit.edu	36	15	26093254	26093254	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon65	c.C9939T	p.R3313R	.	.	.
APBA2	321	broad.mit.edu	36	15	27172690	27172690	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005503	exon6	c.C1190T	p.A397V	.	.	.
TJP1	7082	broad.mit.edu	36	15	27783764	27783764	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175610	exon26	c.C4866A	p.P1622P	.	.	.
CHRFAM7A	89832	broad.mit.edu	36	15	28451829	28451829	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139320	exon7	c.C336T	p.P112P	.	.	.
RYR3	6263	broad.mit.edu	36	15	31898169	31898169	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon76	c.G10698A	p.T3566T	.	.	.
FAM98B	283742	broad.mit.edu	36	15	36563993	36563993	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173611	exon8	c.A1143T	p.G381G	.	.	.
RPAP1	26015	broad.mit.edu	36	15	39615043	39615043	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015540	exon5	c.C500A	p.P167Q	.	.	.
MGA	23269	broad.mit.edu	36	15	39748803	39748803	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164273	exon2	c.G419A	p.R140H	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41608257	41608257	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002373	exon4	c.G7294T	p.A2432S	.	.	.
SPG11	80208	broad.mit.edu	36	15	42685574	42685574	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025137	exon20	c.C3461A	p.S1154X	.	.	.
USP50	373509	broad.mit.edu	36	15	48618310	48618310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203494	exon5	c.G691A	p.A231T	.	.	.
SPPL2A	84888	broad.mit.edu	36	15	48812151	48812151	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032802	exon9	c.A955G	p.I319V	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49534706	49534706	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon39	c.G8472A	p.A2824A	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50340514	50340514	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018728	exon10	c.A1150C	p.T384P	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50343707	50343707	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018728	exon9	c.C1019T	p.A340V	.	.	.
TCF12	6938	broad.mit.edu	36	15	55352612	55352612	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207037	exon19	c.G1838A	p.R613H	.	.	.
VPS13C	54832	broad.mit.edu	36	15	59998808	59998808	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017684	exon56	c.A7481G	p.K2494R	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60088225	60088225	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017684	exon12	c.T910C	p.S304P	.	.	.
IQCH	64799	broad.mit.edu	36	15	65479555	65479555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031715	exon14	c.G1955A	p.R652H	.	.	.
CALML4	91860	broad.mit.edu	36	15	66276863	66276863	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031733	exon3	c.G321A	p.T107T	.	.	.
TLE3	7090	broad.mit.edu	36	15	68145595	68145595	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020908	exon7	c.C389T	p.A130V	.	.	.
LARP6	55323	broad.mit.edu	36	15	68911614	68911614	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018357	exon3	c.G1307A	p.R436H	.	.	.
THSD4	79875	broad.mit.edu	36	15	69827842	69827842	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024817	exon13	c.G2270A	p.R757K	.	.	.
NR2E3	10002	broad.mit.edu	36	15	69891830	69891830	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014249	exon5	c.G672A	p.S224S	.	.	.
PARP6	56965	broad.mit.edu	36	15	70336785	70336785	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020214	exon12	c.C957T	p.G319G	.	.	.
HCN4	10021	broad.mit.edu	36	15	71403221	71403221	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005477	exon8	c.G2266A	p.A756T	.	.	.
C15orf59	388135	broad.mit.edu	36	15	71819808	71819808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039614	exon2	c.G385A	p.E129K	.	.	.
CYP1A2	1544	broad.mit.edu	36	15	72832626	72832626	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000761	exon6	c.C1215T	p.C405C	.	.	.
COX5A	9377	broad.mit.edu	36	15	73008565	73008565	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004255	exon2	c.T162C	p.A54A	.	.	.
SCAMP5	192683	broad.mit.edu	36	15	73097925	73097925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178111	exon7	c.G509A	p.S170N	.	.	.
C15orf39	56905	broad.mit.edu	36	15	73286544	73286544	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015492	exon2	c.C1102A	p.P368T	.	.	.
NEIL1	79661	broad.mit.edu	36	15	73433157	73433157	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024608	exon6	c.G743A	p.S248N	.	.	.
MAN2C1	4123	broad.mit.edu	36	15	73435403	73435403	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006715	exon26	c.A3020G	p.D1007G	.	.	.
SNX33	257364	broad.mit.edu	36	15	73729306	73729306	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153271	exon1	c.T808G	p.F270V	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	79026456	79026456	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018689	exon28	c.T3953C	p.L1318S	.	.	.
IL16	3603	broad.mit.edu	36	15	79358255	79358255	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172128	exon7	c.T833C	p.L278P	.	.	.
EFTUD1	79631	broad.mit.edu	36	15	80299075	80299075	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040610	exon12	c.A1431G	p.K477K	.	.	.
C15orf40	123207	broad.mit.edu	36	15	81470099	81470099	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160113	exon2	c.A132G	p.E44E	.	.	.
KLHL25	64410	broad.mit.edu	36	15	84113574	84113574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022480	exon2	c.G472A	p.A158T	.	.	.
ACAN	176	broad.mit.edu	36	15	87201158	87201158	+	De_novo_Start_OutOfFrame	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135	exon12	c.G4338T	p.E1446D	.	.	.
RHCG	51458	broad.mit.edu	36	15	87821788	87821788	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016321	exon7	c.C1076T	p.A359V	.	.	.
BLM	641	broad.mit.edu	36	15	89127125	89127125	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000057	exon13	c.A2625G	p.A875A	.	.	.
SV2B	9899	broad.mit.edu	36	15	89570653	89570653	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014848	exon3	c.T156C	p.G52G	.	.	.
CHD2	1106	broad.mit.edu	36	15	91368636	91368636	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001271	exon39	c.C5184T	p.S1728S	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97269452	97269452	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000875	exon6	c.C1263T	p.Y421Y	.	.	.
MEF2A	4205	broad.mit.edu	36	15	98070271	98070271	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005587	exon11	c.G1272A	p.P424P	.	.	.
TEKT5	146279	broad.mit.edu	36	16	10637203	10637203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144674	exon6	c.C1160T	p.P387L	.	.	.
GNPTG	84572	broad.mit.edu	36	16	1352883	1352883	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032520	exon10	c.C798T	p.H266H	.	.	.
MYH11	4629	broad.mit.edu	36	16	15718673	15718673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon39	c.C5350T	p.R1784C	.	.	.
MYH11	4629	broad.mit.edu	36	16	15719771	15719771	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon38	c.C5218T	p.R1740C	.	.	.
MYH11	4629	broad.mit.edu	36	16	15742951	15742951	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon23	c.G2750A	p.R917Q	.	.	.
CRAMP1L	57585	broad.mit.edu	36	16	1659107	1659107	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020825	exon18	c.A3439G	p.T1147A	.	.	.
SMG1	23049	broad.mit.edu	36	16	18815640	18815640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015092	exon2	c.G232A	p.A78T	.	.	.
C16orf88	400506	broad.mit.edu	36	16	19629333	19629333	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012991	exon4	c.C1064T	p.T355M	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20855595	20855595	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon60	c.G11736T	p.E3912D	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20882697	20882697	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon53	c.C10010T	p.T3337M	.	.	.
TRAF7	84231	broad.mit.edu	36	16	2160648	2160648	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032271	exon5	c.C264T	p.S88S	.	.	.
SCNN1B	6338	broad.mit.edu	36	16	23299336	23299336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000336	exon13	c.G1636A	p.D546N	.	.	.
ERN2	10595	broad.mit.edu	36	16	23625221	23625221	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033266	exon7	c.C664A	p.P222T	.	.	.
PRKCB	5579	broad.mit.edu	36	16	24110018	24110018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212535	exon16	c.G1829A	p.R610H	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24480732	24480732	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018703	exon10	c.G1038A	p.P346P	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24709773	24709773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014494	exon6	c.C2309T	p.T770I	.	.	.
HS3ST4	9951	broad.mit.edu	36	16	26054943	26054943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006040	exon2	c.G1244A	p.R415Q	.	.	.
ATXN2L	11273	broad.mit.edu	36	16	28755175	28755175	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148414	exon23	c.G3167A	p.R1056H	.	.	.
SH2B1	25970	broad.mit.edu	36	16	28791363	28791363	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015503	exon7	c.G1733A	p.R578H	.	.	.
DOC2A	8448	broad.mit.edu	36	16	29926053	29926053	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003586	exon6	c.G596A	p.R199H	.	.	.
MAPK3	5595	broad.mit.edu	36	16	30040826	30040826	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040056	exon2	c.C173T	p.S58L	.	.	.
ITGAL	3683	broad.mit.edu	36	16	30425659	30425659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114380	exon19	c.G2237A	p.R746H	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30632442	30632442	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006662	exon16	c.G2402A	p.R801H	.	.	.
RNF40	9810	broad.mit.edu	36	16	30685594	30685594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014771	exon11	c.G1325A	p.R442H	.	.	.
TRIM72	493829	broad.mit.edu	36	16	31141683	31141683	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008274	exon6	c.G775A	p.A259T	.	.	.
ZNF213	7760	broad.mit.edu	36	16	3128459	3128459	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134655	exon3	c.C439T	p.R147W	.	.	.
ITGAD	3681	broad.mit.edu	36	16	31316693	31316693	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005353	exon5	c.G389A	p.R130H	.	.	.
ITGAD	3681	broad.mit.edu	36	16	31322344	31322344	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005353	exon7	c.A581C	p.N194T	.	.	.
TGFB1I1	7041	broad.mit.edu	36	16	31392288	31392288	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042454	exon2	c.T39C	p.T13T	.	.	.
MEFV	4210	broad.mit.edu	36	16	3233535	3233535	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000243	exon10	c.C1953T	p.G651G	.	.	.
ZNF75A	7627	broad.mit.edu	36	16	3307833	3307833	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153028	exon6	c.G854A	p.R285Q	.	.	.
ZNF597	146434	broad.mit.edu	36	16	3426829	3426829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152457	exon4	c.G871A	p.V291I	.	.	.
SLX4	84464	broad.mit.edu	36	16	3579800	3579800	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon12	c.C3840T	p.S1280S	.	.	.
SLX4	84464	broad.mit.edu	36	16	3598482	3598482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon2	c.C485T	p.T162M	.	.	.
TRAP1	10131	broad.mit.edu	36	16	3653479	3653479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016292	exon14	c.C1655T	p.T552M	.	.	.
ADCY9	115	broad.mit.edu	36	16	3969168	3969168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001116	exon8	c.G2629A	p.A877T	.	.	.
DNAJA3	9093	broad.mit.edu	36	16	4438740	4438740	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135110	exon9	c.C1131T	p.P377P	.	.	.
NETO2	81831	broad.mit.edu	36	16	45719758	45719758	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018092	exon4	c.G460T	p.A154S	.	.	.
NUDT16L1	84309	broad.mit.edu	36	16	4684987	4684987	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032349	exon3	c.T442C	p.Y148H	.	.	.
SEPT12	124404	broad.mit.edu	36	16	4768089	4768089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144605	exon9	c.C874T	p.R292C	.	.	.
PPL	5493	broad.mit.edu	36	16	4893944	4893944	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002705	exon3	c.G261A	p.A87A	.	.	.
NOD2	64127	broad.mit.edu	36	16	49302518	49302518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022162	exon4	c.G1195A	p.D399N	.	.	.
SALL1	6299	broad.mit.edu	36	16	49728835	49728835	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon3	c.G3664T	p.A1222S	.	.	.
CES5A	221223	broad.mit.edu	36	16	54438182	54438182	+	Missense_Mutation	SNP	C	T	T	rs16955812	byCluster;byFrequency;byHapMap	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143685	exon12	c.G1495A	p.G499R	.	.	.
GPR97	222487	broad.mit.edu	36	16	56270623	56270623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170776	exon5	c.G526A	p.V176M	.	.	.
GPR97	222487	broad.mit.edu	36	16	56277194	56277194	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170776	exon11	c.G1395T	p.A465A	.	.	.
GPR97	222487	broad.mit.edu	36	16	56279857	56279857	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170776	exon12	c.T1633C	p.S545P	.	.	.
KIFC3	3801	broad.mit.edu	36	16	56356981	56356981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130100	exon11	c.C1403T	p.A468V	.	.	.
C16orf57	79650	broad.mit.edu	36	16	56601457	56601457	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024598	exon3	c.G389A	p.R130H	.	.	.
CDH11	1009	broad.mit.edu	36	16	63573505	63573505	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001797	exon8	c.C1200T	p.T400T	.	.	.
CMTM1	113540	broad.mit.edu	36	16	65157954	65157954	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181296	exon1	c.G37T	p.A13S	.	.	.
CES3	23491	broad.mit.edu	36	16	65554656	65554656	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185177	exon2	c.C156T	p.G52G	.	.	.
E2F4	1874	broad.mit.edu	36	16	65783690	65783690	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001950	exon1	c.A59C	p.K20T	.	.	.
FHOD1	29109	broad.mit.edu	36	16	65822747	65822747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013241	exon17	c.G2512A	p.G838S	.	.	.
FHOD1	29109	broad.mit.edu	36	16	65828010	65828010	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013241	exon11	c.A1270G	p.I424V	.	.	.
PLEKHG4	25894	broad.mit.edu	36	16	65876813	65876813	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129727	exon15	c.G2315A	p.R772H	.	.	.
SLC12A4	6560	broad.mit.edu	36	16	66549427	66549427	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145964	exon4	c.A271G	p.M91V	.	.	.
CDH1	999	broad.mit.edu	36	16	67393212	67393212	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004360	exon3	c.A302G	p.Y101C	.	.	.
CDH1	999	broad.mit.edu	36	16	67410798	67410798	+	Silent	SNP	G	A	A	rs35741240	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004360	exon11	c.G1680A	p.T560T	.	.	.
CLEC18C	283971	broad.mit.edu	36	16	68768772	68768772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173619	exon3	c.C344T	p.A115V	.	.	.
ZNF821	55565	broad.mit.edu	36	16	70451705	70451705	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017530	exon6	c.G830A	p.R277Q	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71541950	71541950	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon3	c.T3135C	p.C1045C	.	.	.
WDR59	79726	broad.mit.edu	36	16	73477053	73477053	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030581	exon25	c.C2688T	p.I896I	.	.	.
WDR59	79726	broad.mit.edu	36	16	73541183	73541183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030581	exon5	c.C341T	p.A114V	.	.	.
HSD17B2	3294	broad.mit.edu	36	16	80659402	80659402	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002153	exon2	c.G392A	p.R131H	.	.	.
LRRC50	123872	broad.mit.edu	36	16	82756966	82756966	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178452	exon7	c.C940T	p.R314W	.	.	.
FAM92B	339145	broad.mit.edu	36	16	83701472	83701472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198491	exon2	c.C116T	p.T39M	.	.	.
LMF1	64788	broad.mit.edu	36	16	844628	844628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022773	exon11	c.C1609T	p.R537W	.	.	.
C16orf68	79091	broad.mit.edu	36	16	8646011	8646011	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024109	exon10	c.G1107T	p.K369N	.	.	.
LMF1	64788	broad.mit.edu	36	16	869713	869713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022773	exon6	c.C755T	p.A252V	.	.	.
CDK10	8558	broad.mit.edu	36	16	88285407	88285407	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098533	exon4	c.G75A	p.P25P	.	.	.
TCF25	22980	broad.mit.edu	36	16	88498054	88498054	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014972	exon13	c.G1409C	p.S470T	.	.	.
USP7	7874	broad.mit.edu	36	16	8895396	8895396	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003470	exon31	c.G3269A	p.R1090H	.	.	.
USP7	7874	broad.mit.edu	36	16	8921717	8921717	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003470	exon5	c.C611T	p.A204V	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9939530	9939530	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134408	exon3	c.C794T	p.T265M	.	.	.
SLX4	84464	broad.mit.edu	36	16	3579381	3579381	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon12	c.4259delC	p.P1420fs	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55670525	55670525	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032206	exon44	c.5144delC	p.S1715fs	.	.	.
MYH13	8735	broad.mit.edu	36	17	10174503	10174503	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003802	exon21	c.G2361A	p.T787T	.	.	.
SLC43A2	124935	broad.mit.edu	36	17	1466770	1466770	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152346	exon3	c.G204A	p.G68G	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15909003	15909003	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190440	exon33	c.A5055G	p.G1685G	.	.	.
ZNF287	57336	broad.mit.edu	36	17	16411459	16411459	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020653	exon2	c.G312T	p.E104D	.	.	.
MPRIP	23164	broad.mit.edu	36	17	16970808	16970808	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015134	exon4	c.G335A	p.R112H	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17987989	17987989	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016239	exon27	c.C6127A	p.L2043M	.	.	.
TOP3A	7156	broad.mit.edu	36	17	18149182	18149182	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004618	exon5	c.C468T	p.I156I	.	.	.
FAM83G	644815	broad.mit.edu	36	17	18815595	18815595	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039999	exon6	c.C2274T	p.P758P	.	.	.
DPH1	1801	broad.mit.edu	36	17	1883551	1883551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001383	exon2	c.C79T	p.R27W	.	.	.
MAPK7	5598	broad.mit.edu	36	17	19224657	19224657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139033	exon4	c.G542A	p.R181H	.	.	.
ULK2	9706	broad.mit.edu	36	17	19627612	19627612	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142610	exon22	c.C2450T	p.T817M	.	.	.
USP22	23326	broad.mit.edu	36	17	20872549	20872549	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015276	exon2	c.G202A	p.V68I	.	.	.
KSR1	8844	broad.mit.edu	36	17	22968542	22968542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014238	exon20	c.G2243A	p.R748Q	.	.	.
SLC13A2	9058	broad.mit.edu	36	17	23842891	23842891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145976	exon5	c.G643A	p.G215S	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23971061	23971061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014680	exon30	c.C5464T	p.R1822W	.	.	.
PROCA1	147011	broad.mit.edu	36	17	24054864	24054864	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152465	exon4	c.C850T	p.R284W	.	.	.
PHF12	57649	broad.mit.edu	36	17	24262360	24262360	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033561	exon10	c.C2111T	p.T704M	.	.	.
ANKRD13B	124930	broad.mit.edu	36	17	24959202	24959202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152345	exon3	c.G323A	p.R108Q	.	.	.
KIAA0664	23277	broad.mit.edu	36	17	2543980	2543980	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015229	exon19	c.C3078T	p.L1026L	.	.	.
SLC6A4	6532	broad.mit.edu	36	17	25569277	25569277	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001045	exon5	c.C683T	p.A228V	.	.	.
PSMD11	5717	broad.mit.edu	36	17	27830479	27830479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002815	exon10	c.G1010A	p.R337Q	.	.	.
NLE1	54475	broad.mit.edu	36	17	30487302	30487302	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014445	exon8	c.G134A	p.R45Q	.	.	.
SLFN13	146857	broad.mit.edu	36	17	30793224	30793224	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144682	exon5	c.G1393A	p.A465T	.	.	.
TRPV1	7442	broad.mit.edu	36	17	3441059	3441059	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018727	exon4	c.G552A	p.T184T	.	.	.
FBXL20	84961	broad.mit.edu	36	17	34673956	34673956	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032875	exon14	c.A1201T	p.R401W	.	.	.
MED24	9862	broad.mit.edu	36	17	35430076	35430076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079518	exon23	c.C2641T	p.R881W	.	.	.
MED24	9862	broad.mit.edu	36	17	35433025	35433025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079518	exon19	c.C2096T	p.T699M	.	.	.
NR1D1	9572	broad.mit.edu	36	17	35506487	35506487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021724	exon3	c.G442A	p.A148T	.	.	.
RAPGEFL1	51195	broad.mit.edu	36	17	35599077	35599077	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016339	exon6	c.G420A	p.T140T	.	.	.
SMARCE1	6605	broad.mit.edu	36	17	36047334	36047334	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003079	exon5	c.C173T	p.T58M	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3607115	3607115	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002208	exon10	c.G1083A	p.P361P	.	.	.
KRT27	342574	broad.mit.edu	36	17	36189499	36189499	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181537	exon4	c.G825A	p.A275A	.	.	.
NT5C3L	115024	broad.mit.edu	36	17	37244999	37244999	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052935	exon3	c.C163T	p.R55X	.	.	.
KAT2A	2648	broad.mit.edu	36	17	37523305	37523305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021078	exon9	c.C1345T	p.R449C	.	.	.
PTRF	284119	broad.mit.edu	36	17	37810879	37810879	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012232	exon2	c.G525A	p.S175S	.	.	.
ATP2A3	489	broad.mit.edu	36	17	3786420	3786420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174955	exon16	c.C2414T	p.T805M	.	.	.
MLX	6945	broad.mit.edu	36	17	37974080	37974080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198204	exon3	c.G146A	p.S49N	.	.	.
TUBG1	7283	broad.mit.edu	36	17	38019211	38019211	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001070	exon7	c.C627A	p.A209A	.	.	.
CNTD1	124817	broad.mit.edu	36	17	38211390	38211390	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173478	exon4	c.C542T	p.T181I	.	.	.
G6PC3	92579	broad.mit.edu	36	17	39508623	39508623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138387	exon6	c.G727A	p.V243M	.	.	.
HDAC5	10014	broad.mit.edu	36	17	39511725	39511725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001015053	exon25	c.G3130A	p.A1044T	.	.	.
ATXN7L3	56970	broad.mit.edu	36	17	39627228	39627228	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020218	exon12	c.G994T	p.G332C	.	.	.
UBTF	7343	broad.mit.edu	36	17	39640450	39640450	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076683	exon19	c.C1956T	p.D652D	.	.	.
CYB5D2	124936	broad.mit.edu	36	17	4000037	4000037	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144611	exon2	c.T354C	p.N118N	.	.	.
EFTUD2	9343	broad.mit.edu	36	17	40284636	40284636	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004247	exon27	c.C2791T	p.R931W	.	.	.
NMT1	4836	broad.mit.edu	36	17	40535866	40535866	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021079	exon9	c.C1015T	p.R339X	.	.	.
MAP3K14	9020	broad.mit.edu	36	17	40703696	40703696	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003954	exon11	c.G1838A	p.R613H	.	.	.
ARHGAP27	201176	broad.mit.edu	36	17	40828753	40828753	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199282	exon17	c.T1499C	p.M500T	.	.	.
IMP5	162540	broad.mit.edu	36	17	41278124	41278124	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175882	exon1	c.C72T	p.Y24Y	.	.	.
MAPT	4137	broad.mit.edu	36	17	41407596	41407596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016835	exon4	c.C230T	p.A77V	.	.	.
KIAA1267	284058	broad.mit.edu	36	17	41472993	41472993	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015443	exon8	c.G2125T	p.A709S	.	.	.
NSF	4905	broad.mit.edu	36	17	42182314	42182314	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006178	exon18	c.G1917T	p.K639N	.	.	.
NFE2L1	4779	broad.mit.edu	36	17	43490911	43490911	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003204	exon6	c.T1228G	p.S410A	.	.	.
IGF2BP1	10642	broad.mit.edu	36	17	44478643	44478643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160423	exon12	c.C1133T	p.T378M	.	.	.
NGFR	4804	broad.mit.edu	36	17	44945209	44945209	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002507	exon6	c.T1123C	p.S375P	.	.	.
CHAD	1101	broad.mit.edu	36	17	45900767	45900767	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001267	exon1	c.C407T	p.T136I	.	.	.
RSAD1	55316	broad.mit.edu	36	17	45915711	45915711	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018346	exon6	c.C916T	p.R306X	.	.	.
EPN3	55040	broad.mit.edu	36	17	45969045	45969045	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017957	exon2	c.C129T	p.I43I	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46004999	46004999	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198382	exon6	c.G832A	p.G278S	.	.	.
ABCC3	8714	broad.mit.edu	36	17	46096099	46096099	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144070	exon9	c.G1057A	p.A353T	.	.	.
KIF1C	10749	broad.mit.edu	36	17	4867994	4867994	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006612	exon23	c.G3136A	p.A1046T	.	.	.
GPR172B	55065	broad.mit.edu	36	17	4877574	4877574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017986	exon3	c.G934A	p.A312T	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49256019	49256019	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032559	exon1	c.C626T	p.P209L	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53758665	53758665	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004758	exon3	c.G558A	p.T186T	.	.	.
TEX14	56155	broad.mit.edu	36	17	54034901	54034901	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198393	exon12	c.A1386G	p.V462V	.	.	.
CLTC	1213	broad.mit.edu	36	17	55109218	55109218	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004859	exon17	c.C2683T	p.R895C	.	.	.
USP32	84669	broad.mit.edu	36	17	55640915	55640915	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032582	exon23	c.G2655C	p.G885G	.	.	.
PPM1D	8493	broad.mit.edu	36	17	56095319	56095319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003620	exon6	c.C1442T	p.A481V	.	.	.
INTS2	57508	broad.mit.edu	36	17	57325940	57325940	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020748	exon13	c.C1690T	p.R564C	.	.	.
MRC2	9902	broad.mit.edu	36	17	58097323	58097323	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006039	exon3	c.C657T	p.Y219Y	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59380555	59380555	+	Silent	SNP	G	A	A	rs73992419	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000334	exon15	c.C2919T	p.P973P	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59392441	59392441	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000334	exon11	c.G1689A	p.P563P	.	.	.
APOH	350	broad.mit.edu	36	17	61650298	61650298	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000042	exon4	c.C395T	p.P132L	.	.	.
HELZ	9931	broad.mit.edu	36	17	62564640	62564640	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014877	exon22	c.C2822T	p.A941V	.	.	.
SLC16A6	9120	broad.mit.edu	36	17	63778913	63778913	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004694	exon5	c.G983A	p.R328H	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64816030	64816030	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172232	exon5	c.G544A	p.A182T	.	.	.
KCNJ2	3759	broad.mit.edu	36	17	65682826	65682826	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000891	exon2	c.C51T	p.D17D	.	.	.
FBXO39	162517	broad.mit.edu	36	17	6631394	6631394	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153230	exon4	c.C1252T	p.Q418X	.	.	.
NXN	64359	broad.mit.edu	36	17	669532	669532	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022463	exon5	c.G717A	p.S239S	.	.	.
OTOP2	92736	broad.mit.edu	36	17	70432579	70432579	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178160	exon2	c.G257A	p.R86H	.	.	.
RECQL5	9400	broad.mit.edu	36	17	71135135	71135135	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004259	exon20	c.G2938A	p.E980K	.	.	.
QRICH2	84074	broad.mit.edu	36	17	71799346	71799346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032134	exon4	c.C2559T	p.Y853Y	.	.	.
QRICH2	84074	broad.mit.edu	36	17	71799887	71799887	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032134	exon4	c.G2018A	p.R673H	.	.	.
PRPSAP1	5635	broad.mit.edu	36	17	71852384	71852384	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002766	exon3	c.C253T	p.R85C	.	.	.
JMJD6	23210	broad.mit.edu	36	17	72226482	72226482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015167	exon6	c.C1136T	p.T379M	.	.	.
SEC14L1	6397	broad.mit.edu	36	17	72714486	72714486	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039573	exon13	c.C1423T	p.L475L	.	.	.
TMC6	11322	broad.mit.edu	36	17	73626692	73626692	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007267	exon15	c.C1842T	p.P614P	.	.	.
SENP3	26168	broad.mit.edu	36	17	7408878	7408878	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015670	exon3	c.C928T	p.R310X	.	.	.
TIMP2	7077	broad.mit.edu	36	17	74363388	74363388	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003255	exon5	c.G619A	p.A207T	.	.	.
CBX2	84733	broad.mit.edu	36	17	75370161	75370161	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032647	exon4	c.C254T	p.A85V	.	.	.
TBC1D16	125058	broad.mit.edu	36	17	75601899	75601899	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019020	exon2	c.T43A	p.S15T	.	.	.
CARD14	79092	broad.mit.edu	36	17	75792651	75792651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024110	exon17	c.C2314T	p.R772C	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76472246	76472246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020761	exon16	c.G1721A	p.R574H	.	.	.
BAIAP2	10458	broad.mit.edu	36	17	76674960	76674960	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006340	exon6	c.G474A	p.S158S	.	.	.
TMEM105	284186	broad.mit.edu	36	17	76902835	76902835	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178520	exon2	c.C23T	p.A8V	.	.	.
SIRT7	51547	broad.mit.edu	36	17	77463745	77463745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016538	exon10	c.C1042T	p.R348C	.	.	.
ALOX15B	247	broad.mit.edu	36	17	7883431	7883431	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039130	exon2	c.G150T	p.E50D	.	.	.
ALOX12B	242	broad.mit.edu	36	17	7917718	7917718	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139	exon13	c.T1737C	p.A579A	.	.	.
PER1	5187	broad.mit.edu	36	17	7991329	7991329	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002616	exon13	c.C1593T	p.N531N	.	.	.
C17orf59	54785	broad.mit.edu	36	17	8033246	8033246	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017622	exon1	c.T938C	p.M313T	.	.	.
RCVRN	5957	broad.mit.edu	36	17	9748940	9748940	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002903	exon1	c.G283A	p.A95T	.	.	.
TRPV1	7442	broad.mit.edu	36	17	3438274	3438276	+	In_Frame_Del	DEL	TTC	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	TTC	TTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018727	exon7	c.1179_1181del	p.393_394del	.	.	.
APCDD1	147495	broad.mit.edu	36	18	10458502	10458502	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153000	exon2	c.G95T	p.S32I	.	.	.
NAPG	8774	broad.mit.edu	36	18	10522792	10522792	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003826	exon3	c.C209T	p.A70V	.	.	.
CEP192	55125	broad.mit.edu	36	18	13045897	13045897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032142	exon19	c.C3308T	p.T1103I	.	.	.
CEP192	55125	broad.mit.edu	36	18	13059738	13059738	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032142	exon27	c.T5057C	p.V1686A	.	.	.
USP14	9097	broad.mit.edu	36	18	192914	192914	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005151	exon11	c.C911T	p.T304M	.	.	.
NPC1	4864	broad.mit.edu	36	18	19390547	19390547	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000271	exon8	c.C984T	p.S328S	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21058371	21058371	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015461	exon4	c.G3509A	p.S1170N	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21058683	21058683	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015461	exon4	c.A3197C	p.K1066T	.	.	.
TAF4B	6875	broad.mit.edu	36	18	22108785	22108785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005640	exon4	c.C758T	p.P253L	.	.	.
TAF4B	6875	broad.mit.edu	36	18	22155111	22155111	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005640	exon11	c.C2082T	p.G694G	.	.	.
DSG1	1828	broad.mit.edu	36	18	27162190	27162190	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001942	exon4	c.G257A	p.R86H	.	.	.
B4GALT6	9331	broad.mit.edu	36	18	27465050	27465050	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004775	exon6	c.A646G	p.M216V	.	.	.
MEP1B	4225	broad.mit.edu	36	18	28044606	28044606	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005925	exon10	c.T1064C	p.L355P	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29579870	29579870	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030632	exon12	c.A6060G	p.P2020P	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3057309	3057309	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019856	exon37	c.C4721T	p.A1574V	.	.	.
PIK3C3	5289	broad.mit.edu	36	18	37891993	37891993	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002647	exon22	c.G2412A	p.T804T	.	.	.
SLC14A2	8170	broad.mit.edu	36	18	41459652	41459652	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007163	exon3	c.C157T	p.R53W	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41738049	41738049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon25	c.G4361A	p.R1454H	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41749560	41749560	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon20	c.C3607T	p.R1203W	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42814275	42814275	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016427	exon1	c.G1359A	p.T453T	.	.	.
ZBTB7C	201501	broad.mit.edu	36	18	43820337	43820337	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039360	exon2	c.G1140A	p.P380P	.	.	.
ACAA2	10449	broad.mit.edu	36	18	45583178	45583178	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006111	exon2	c.C60T	p.Y20Y	.	.	.
ME2	4200	broad.mit.edu	36	18	46712650	46712650	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168335	exon13	c.A1339G	p.S447G	.	.	.
C18orf54	162681	broad.mit.edu	36	18	50142159	50142159	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173529	exon3	c.G432A	p.P144P	.	.	.
FECH	2235	broad.mit.edu	36	18	53373143	53373143	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012515	exon8	c.G862A	p.A288T	.	.	.
FECH	2235	broad.mit.edu	36	18	53381166	53381166	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012515	exon6	c.C661T	p.R221W	.	.	.
NARS	4677	broad.mit.edu	36	18	53421048	53421048	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004539	exon12	c.T1377G	p.T459T	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5387204	5387204	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012307	exon18	c.G2694A	p.T898T	.	.	.
KIAA1468	57614	broad.mit.edu	36	18	58045569	58045569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020854	exon6	c.G926A	p.R309Q	.	.	.
CDH19	28513	broad.mit.edu	36	18	62323218	62323218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021153	exon12	c.G2130A	p.P710P	.	.	.
DOK6	220164	broad.mit.edu	36	18	65219484	65219484	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152721	exon1	c.A24G	p.I8M	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6956164	6956164	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon49	c.C7032T	p.Y2344Y	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6964995	6964995	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon46	c.C6530T	p.A2177V	.	.	.
CNDP2	55748	broad.mit.edu	36	18	70324121	70324121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018235	exon4	c.G262A	p.D88N	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7070337	7070337	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon2	c.G181A	p.V61I	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70904176	70904176	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017757	exon8	c.G5511A	p.A1837A	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72721144	72721144	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007345	exon8	c.G1066A	p.D356N	.	.	.
ATP9B	374868	broad.mit.edu	36	18	74957564	74957564	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198531	exon2	c.C220T	p.R74X	.	.	.
ATP9B	374868	broad.mit.edu	36	18	75138125	75138125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198531	exon13	c.G1352A	p.R451Q	.	.	.
CTDP1	9150	broad.mit.edu	36	18	75578567	75578567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_048368	exon9	c.G2113A	p.V705M	.	.	.
DSG3	1830	broad.mit.edu	36	18	27298175	27298175	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001944	exon9	c.1103delC	p.T368fs	.	.	.
ANGPTL6	83854	broad.mit.edu	36	19	10065056	10065056	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031917	exon5	c.C1191T	p.S397S	.	.	.
DOCK6	57572	broad.mit.edu	36	19	11208514	11208514	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020812	exon19	c.C2115T	p.G705G	.	.	.
RAB3D	9545	broad.mit.edu	36	19	11307143	11307143	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004283	exon4	c.G452A	p.R151Q	.	.	.
PRKCSH	5589	broad.mit.edu	36	19	11420765	11420765	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002743	exon15	c.G1302A	p.S434S	.	.	.
ECSIT	51295	broad.mit.edu	36	19	11485044	11485044	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142464	exon4	c.C565T	p.R189C	.	.	.
ZNF823	55552	broad.mit.edu	36	19	11694064	11694064	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080493	exon4	c.G1285A	p.G429S	.	.	.
GCDH	2639	broad.mit.edu	36	19	12869224	12869224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013976	exon10	c.G1064A	p.R355H	.	.	.
FARSA	2193	broad.mit.edu	36	19	12902434	12902434	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004461	exon2	c.G277A	p.E93K	.	.	.
RAD23A	5886	broad.mit.edu	36	19	12919787	12919787	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005053	exon2	c.C198T	p.I66I	.	.	.
RAD23A	5886	broad.mit.edu	36	19	12920152	12920152	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005053	exon3	c.G396A	p.T132T	.	.	.
TRMT1	55621	broad.mit.edu	36	19	13077195	13077195	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017722	exon15	c.C1719T	p.D573D	.	.	.
CCDC130	81576	broad.mit.edu	36	19	13730999	13730999	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030818	exon8	c.G486A	p.A162A	.	.	.
RFX1	5989	broad.mit.edu	36	19	13937457	13937457	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002918	exon15	c.C2094T	p.D698D	.	.	.
PRKACA	5566	broad.mit.edu	36	19	14069433	14069433	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002730	exon7	c.C600T	p.C200C	.	.	.
SLC1A6	6511	broad.mit.edu	36	19	14926029	14926029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005071	exon7	c.G1282A	p.A428T	.	.	.
SYDE1	85360	broad.mit.edu	36	19	15082487	15082487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033025	exon4	c.G1231A	p.G411S	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15142154	15142154	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000435	exon27	c.C5102T	p.A1701V	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15157398	15157398	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000435	exon13	c.C2044A	p.L682I	.	.	.
CYP4F22	126410	broad.mit.edu	36	19	15512382	15512382	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173483	exon8	c.C793T	p.R265W	.	.	.
TCF3	6929	broad.mit.edu	36	19	1574996	1574996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136139	exon7	c.C503T	p.T168M	.	.	.
AP1M1	8907	broad.mit.edu	36	19	16205325	16205325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130524	exon11	c.C1105T	p.R369W	.	.	.
CHERP	10523	broad.mit.edu	36	19	16504469	16504469	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006387	exon5	c.G614T	p.G205V	.	.	.
SIN3B	23309	broad.mit.edu	36	19	16837445	16837445	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015260	exon12	c.C1704T	p.P568P	.	.	.
FAM129C	199786	broad.mit.edu	36	19	17515145	17515145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173544	exon12	c.C1442T	p.A481V	.	.	.
GLT25D1	79709	broad.mit.edu	36	19	17531202	17531202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024656	exon2	c.G343A	p.V115M	.	.	.
FCHO1	23149	broad.mit.edu	36	19	17742602	17742602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161359	exon7	c.C341T	p.A114V	.	.	.
FCHO1	23149	broad.mit.edu	36	19	17756541	17756541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161359	exon24	c.G2084A	p.R695H	.	.	.
REXO1	57455	broad.mit.edu	36	19	1778903	1778903	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020695	exon2	c.G885A	p.T295T	.	.	.
JAK3	3718	broad.mit.edu	36	19	17806718	17806718	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000215	exon16	c.G2142A	p.T714T	.	.	.
SLC5A5	6528	broad.mit.edu	36	19	17847774	17847774	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000453	exon5	c.C557A	p.A186D	.	.	.
KCNN1	3780	broad.mit.edu	36	19	17953728	17953728	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002248	exon5	c.C709T	p.R237C	.	.	.
MAST3	23031	broad.mit.edu	36	19	18106670	18106670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015016	exon16	c.G1661A	p.R554H	.	.	.
CRTC1	23373	broad.mit.edu	36	19	18721639	18721639	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015321	exon5	c.G492A	p.Q164Q	.	.	.
COMP	1311	broad.mit.edu	36	19	18758428	18758428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000095	exon11	c.G1168A	p.V390I	.	.	.
GATAD2A	54815	broad.mit.edu	36	19	19467651	19467651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017660	exon6	c.C713T	p.A238V	.	.	.
MKNK2	2872	broad.mit.edu	36	19	1994502	1994502	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017572	exon6	c.G419T	p.R140M	.	.	.
AP3D1	8943	broad.mit.edu	36	19	2061171	2061171	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003938	exon26	c.G3042A	p.A1014A	.	.	.
SF3A2	8175	broad.mit.edu	36	19	2197936	2197936	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007165	exon7	c.C461T	p.A154V	.	.	.
JSRP1	126306	broad.mit.edu	36	19	2205260	2205260	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144616	exon4	c.C188A	p.P63H	.	.	.
SPPL2B	56928	broad.mit.edu	36	19	2289839	2289839	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077238	exon4	c.C458T	p.T153M	.	.	.
SGTA	6449	broad.mit.edu	36	19	2714719	2714719	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003021	exon6	c.C429T	p.G143G	.	.	.
GNA15	2769	broad.mit.edu	36	19	3101197	3101197	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002068	exon3	c.G399A	p.A133A	.	.	.
TJP3	27134	broad.mit.edu	36	19	3699060	3699060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014428	exon18	c.C2690T	p.S897L	.	.	.
MATK	4145	broad.mit.edu	36	19	3730033	3730033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139354	exon11	c.G1031A	p.R344Q	.	.	.
MATK	4145	broad.mit.edu	36	19	3730422	3730422	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139354	exon10	c.C832T	p.R278W	.	.	.
DPY19L3	147991	broad.mit.edu	36	19	37663297	37663297	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172774	exon18	c.C1983T	p.N661N	.	.	.
ZFR2	23217	broad.mit.edu	36	19	3782779	3782779	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015174	exon4	c.G477A	p.A159A	.	.	.
LSM14A	26065	broad.mit.edu	36	19	39397910	39397910	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114093	exon5	c.A580G	p.T194A	.	.	.
GPI	2821	broad.mit.edu	36	19	39579360	39579360	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000175	exon14	c.G1227A	p.P409P	.	.	.
WTIP	126374	broad.mit.edu	36	19	39675787	39675787	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080436	exon3	c.C775T	p.R259X	.	.	.
ZNF30	90075	broad.mit.edu	36	19	40126574	40126574	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099437	exon5	c.C867T	p.Y289Y	.	.	.
FXYD5	53827	broad.mit.edu	36	19	40349008	40349008	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164605	exon8	c.C427T	p.R143W	.	.	.
GAPDHS	26330	broad.mit.edu	36	19	40725282	40725282	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014364	exon6	c.G591A	p.P197P	.	.	.
RBM42	79171	broad.mit.edu	36	19	40815845	40815845	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024321	exon6	c.G535A	p.G179S	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41014057	41014057	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004646	exon26	c.G3368A	p.R1123Q	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41025159	41025159	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004646	exon18	c.C2468T	p.A823V	.	.	.
WDR62	284403	broad.mit.edu	36	19	41265819	41265819	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083961	exon11	c.C1386T	p.V462V	.	.	.
ZNF529	57711	broad.mit.edu	36	19	41730003	41730003	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145649	exon6	c.G1297A	p.V433I	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42881686	42881686	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032689	exon5	c.A1186T	p.N396Y	.	.	.
SH3GL1	6455	broad.mit.edu	36	19	4317964	4317964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003025	exon2	c.G73A	p.E25K	.	.	.
SPINT2	10653	broad.mit.edu	36	19	43470396	43470396	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166103	exon2	c.G147A	p.A49A	.	.	.
FAM98C	147965	broad.mit.edu	36	19	43588007	43588007	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174905	exon6	c.G642A	p.L214L	.	.	.
RYR1	6261	broad.mit.edu	36	19	43728939	43728939	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042723	exon87	c.C12012T	p.I4004I	.	.	.
SAMD4B	55095	broad.mit.edu	36	19	44552274	44552274	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018028	exon6	c.A336G	p.S112S	.	.	.
PLEKHG2	64857	broad.mit.edu	36	19	44597727	44597727	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022835	exon3	c.G365A	p.R122H	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45125208	45125208	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003890	exon2	c.C901T	p.P301S	.	.	.
AKT2	208	broad.mit.edu	36	19	45433084	45433084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001626	exon12	c.C1189T	p.P397S	.	.	.
SERTAD3	29946	broad.mit.edu	36	19	45639334	45639334	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203344	exon2	c.G494T	p.R165L	.	.	.
SPTBN4	57731	broad.mit.edu	36	19	45687833	45687833	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020971	exon4	c.G333A	p.T111T	.	.	.
HNRNPUL1	11100	broad.mit.edu	36	19	46466005	46466005	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144732	exon2	c.C33T	p.Y11Y	.	.	.
DPP9	91039	broad.mit.edu	36	19	4655161	4655161	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139159	exon6	c.C582T	p.G194G	.	.	.
B3GNT8	374907	broad.mit.edu	36	19	46623415	46623415	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198540	exon3	c.G1109A	p.R370H	.	.	.
CIC	23152	broad.mit.edu	36	19	47484900	47484900	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015125	exon7	c.G952A	p.V318I	.	.	.
PSG6	5675	broad.mit.edu	36	19	48277048	48277048	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031246	exon2	c.C255T	p.D85D	.	.	.
CADM4	199731	broad.mit.edu	36	19	48819355	48819355	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145296	exon9	c.C1134T	p.D378D	.	.	.
C19orf61	56006	broad.mit.edu	36	19	48943748	48943748	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019108	exon4	c.G367A	p.A123T	.	.	.
ZNF227	7770	broad.mit.edu	36	19	49432420	49432420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182490	exon6	c.G1997A	p.G666E	.	.	.
EXOC3L2	90332	broad.mit.edu	36	19	50408376	50408376	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138568	exon10	c.C1021T	p.R341W	.	.	.
CKM	1158	broad.mit.edu	36	19	50501958	50501958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001824	exon8	c.G1036A	p.E346K	.	.	.
ERCC1	2067	broad.mit.edu	36	19	50618425	50618425	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001983	exon2	c.G48A	p.P16P	.	.	.
NOVA2	4858	broad.mit.edu	36	19	51135974	51135974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002516	exon4	c.G466A	p.V156M	.	.	.
CCDC61	729440	broad.mit.edu	36	19	51211443	51211443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080402	exon10	c.C1100T	p.T367M	.	.	.
NPAS1	4861	broad.mit.edu	36	19	52234159	52234159	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002517	exon6	c.C714T	p.P238P	.	.	.
SAE1	10055	broad.mit.edu	36	19	52404259	52404259	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145713	exon7	c.C737T	p.P246L	.	.	.
SLC8A2	6543	broad.mit.edu	36	19	52633016	52633016	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015063	exon7	c.G1912A	p.E638K	.	.	.
GRWD1	83743	broad.mit.edu	36	19	53647947	53647947	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031485	exon7	c.C1194T	p.P398P	.	.	.
FAM83E	54854	broad.mit.edu	36	19	53796210	53796210	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017708	exon5	c.G1405C	p.A469P	.	.	.
IZUMO1	284359	broad.mit.edu	36	19	53939607	53939607	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182575	exon4	c.C312T	p.G104G	.	.	.
BCAT2	587	broad.mit.edu	36	19	53995135	53995135	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164773	exon3	c.G170A	p.R57H	.	.	.
ALDH16A1	126133	broad.mit.edu	36	19	54659536	54659536	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153329	exon11	c.C1382T	p.S461L	.	.	.
AP2A1	160	broad.mit.edu	36	19	54977033	54977033	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130787	exon3	c.G154T	p.G52C	.	.	.
NUP62	23636	broad.mit.edu	36	19	55104209	55104209	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012346	exon2	c.C668A	p.A223E	.	.	.
MYH14	79784	broad.mit.edu	36	19	55467631	55467631	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077186	exon26	c.C3199T	p.R1067C	.	.	.
MYH14	79784	broad.mit.edu	36	19	55473300	55473300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077186	exon29	c.G3875A	p.R1292Q	.	.	.
MYBPC2	4606	broad.mit.edu	36	19	55630892	55630892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004533	exon3	c.G157A	p.V53I	.	.	.
MYBPC2	4606	broad.mit.edu	36	19	55638579	55638579	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004533	exon10	c.G919A	p.V307I	.	.	.
GPR32	2854	broad.mit.edu	36	19	55965708	55965708	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001506	exon1	c.C39T	p.D13D	.	.	.
KLK11	11012	broad.mit.edu	36	19	56217692	56217692	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136032	exon6	c.C674T	p.A225V	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5696965	5696965	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152784	exon9	c.C699T	p.F233F	.	.	.
FPR3	2359	broad.mit.edu	36	19	57019526	57019526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002030	exon2	c.G713A	p.R238H	.	.	.
DUS3L	56931	broad.mit.edu	36	19	5738321	5738321	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161619	exon6	c.C538T	p.R180C	.	.	.
PPP2R1A	5518	broad.mit.edu	36	19	57407794	57407794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014225	exon5	c.C547T	p.R183W	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57748942	57748942	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039886	exon5	c.G961T	p.G321C	.	.	.
ZNF415	55786	broad.mit.edu	36	19	58303739	58303739	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136038	exon4	c.C1371T	p.T457T	.	.	.
ZNF761	388561	broad.mit.edu	36	19	58651398	58651398	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008401	exon6	c.A1826G	p.X609X	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59093574	59093574	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002739	exon11	c.C1161T	p.I387I	.	.	.
TFPT	29844	broad.mit.edu	36	19	59303319	59303319	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013342	exon5	c.G468A	p.A156A	.	.	.
LILRB2	10288	broad.mit.edu	36	19	59474613	59474613	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080978	exon6	c.C821T	p.A274V	.	.	.
RFX2	5990	broad.mit.edu	36	19	5955288	5955288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000635	exon13	c.G1424A	p.R475H	.	.	.
KIR3DL1	3811	broad.mit.edu	36	19	60021686	60021686	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013289	exon3	c.A175G	p.M59V	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60143380	60143380	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139176	exon4	c.G619A	p.A207T	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60188374	60188374	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174083	exon8	c.C2109T	p.D703D	.	.	.
C19orf51	352909	broad.mit.edu	36	19	60362539	60362539	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178837	exon12	c.C1470T	p.T490T	.	.	.
PPP6R1	22870	broad.mit.edu	36	19	60439964	60439964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014931	exon17	c.G1847A	p.R616H	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60912135	60912135	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176820	exon9	c.A2931G	p.G977G	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61070998	61070998	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon6	c.C2298T	p.G766G	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61230808	61230808	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153447	exon7	c.A1397G	p.D466G	.	.	.
ZNF667	63934	broad.mit.edu	36	19	61644567	61644567	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022103	exon5	c.A1609C	p.S537R	.	.	.
ZNF543	125919	broad.mit.edu	36	19	62531989	62531989	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213598	exon4	c.A1347C	p.K449N	.	.	.
VN1R1	57191	broad.mit.edu	36	19	62658678	62658678	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020633	exon1	c.C989T	p.T330I	.	.	.
ZNF773	374928	broad.mit.edu	36	19	62710306	62710306	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198542	exon4	c.C1031A	p.S344Y	.	.	.
TUBB4	10382	broad.mit.edu	36	19	6446277	6446277	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006087	exon4	c.C1233T	p.A411A	.	.	.
SH2D3A	10045	broad.mit.edu	36	19	6711878	6711878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005490	exon3	c.C190T	p.R64C	.	.	.
VAV1	7409	broad.mit.edu	36	19	6773293	6773293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005428	exon5	c.G511A	p.D171N	.	.	.
INSR	3643	broad.mit.edu	36	19	7218488	7218488	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000208	exon2	c.T520C	p.L174L	.	.	.
ARHGEF18	23370	broad.mit.edu	36	19	7415252	7415252	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015318	exon5	c.G485A	p.R162Q	.	.	.
MYO1F	4542	broad.mit.edu	36	19	8522651	8522651	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012335	exon8	c.C744T	p.D248D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8878354	8878354	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon26	c.A37970G	p.Y12657C	.	.	.
ABCA7	10347	broad.mit.edu	36	19	994731	994731	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019112	exon10	c.G938A	p.R313Q	.	.	.
RRAGC	64121	broad.mit.edu	36	1	39097738	39097739	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022157	exon1	c.168_169insG	p.G56fs	.	.	.
EXTL2	2135	broad.mit.edu	36	1	101115703	101115703	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033025	exon3	c.A350G	p.H117R	.	.	.
PRMT6	55170	broad.mit.edu	36	1	107401857	107401857	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018137	exon1	c.C997T	p.Q333X	.	.	.
VAV3	10451	broad.mit.edu	36	1	108308860	108308860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006113	exon1	c.C155T	p.A52V	.	.	.
C1orf127	148345	broad.mit.edu	36	1	10930442	10930442	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170754	exon12	c.C2337T	p.Y779Y	.	.	.
TAF13	6884	broad.mit.edu	36	1	109408818	109408818	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005645	exon4	c.T225C	p.I75I	.	.	.
SORT1	6272	broad.mit.edu	36	1	109671712	109671712	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002959	exon12	c.C1406T	p.S469F	.	.	.
AMIGO1	57463	broad.mit.edu	36	1	109852689	109852689	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020703	exon2	c.T369C	p.R123R	.	.	.
FAM40A	85369	broad.mit.edu	36	1	110383544	110383544	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033088	exon5	c.G465A	p.T155T	.	.	.
SRM	6723	broad.mit.edu	36	1	11039366	11039366	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003132	exon4	c.C417T	p.G139G	.	.	.
CD53	963	broad.mit.edu	36	1	111236574	111236574	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000560	exon3	c.C148A	p.L50I	.	.	.
DRAM2	128338	broad.mit.edu	36	1	111462327	111462327	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178454	exon9	c.G779A	p.R260Q	.	.	.
PTCHD2	57540	broad.mit.edu	36	1	11483665	11483665	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020780	exon2	c.A29G	p.Q10R	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114967734	114967734	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198459	exon3	c.C860T	p.T287M	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115070473	115070473	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130523	exon14	c.C1567T	p.R523X	.	.	.
ATP1A1	476	broad.mit.edu	36	1	116737816	116737816	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000701	exon12	c.C1608T	p.D536D	.	.	.
PTGFRN	5738	broad.mit.edu	36	1	117289071	117289071	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020440	exon3	c.C666T	p.L222L	.	.	.
TTF2	8458	broad.mit.edu	36	1	117419716	117419716	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003594	exon5	c.G987A	p.A329A	.	.	.
TTF2	8458	broad.mit.edu	36	1	117419788	117419788	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003594	exon5	c.C1059T	p.D353D	.	.	.
MTHFR	4524	broad.mit.edu	36	1	11777880	11777880	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005957	exon6	c.G893A	p.G298D	.	.	.
MFN2	9927	broad.mit.edu	36	1	11989760	11989760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127660	exon16	c.G1936A	p.V646I	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12260332	12260332	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon19	c.C4100T	p.S1367L	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12341190	12341190	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon49	c.C10012T	p.R3338X	.	.	.
DVL1	1855	broad.mit.edu	36	1	1265500	1265500	+	Silent	SNP	C	T	T	rs1140338	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004421	exon7	c.G759A	p.T253T	.	.	.
PRAMEF13	400736	broad.mit.edu	36	1	13541647	13541647	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099854	exon4	c.C1126T	p.R376C	.	.	.
PRDM2	7799	broad.mit.edu	36	1	14015520	14015520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012231	exon9	c.G5048A	p.R1683H	.	.	.
BCL9	607	broad.mit.edu	36	1	145557997	145557997	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004326	exon8	c.C1412T	p.A471V	.	.	.
NBPF15	284565	broad.mit.edu	36	1	146857941	146857941	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102663	exon12	c.G1382A	p.S461N	.	.	.
MTMR11	10903	broad.mit.edu	36	1	148169841	148169841	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181873	exon12	c.C1009T	p.R337X	.	.	.
RPRD2	23248	broad.mit.edu	36	1	148683387	148683387	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015203	exon6	c.C604T	p.R202C	.	.	.
BNIPL	149428	broad.mit.edu	36	1	149277950	149277950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159642	exon4	c.G11A	p.R4H	.	.	.
CDC42SE1	56882	broad.mit.edu	36	1	149294134	149294134	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001038707	exon4	c.C147T	p.A49A	.	.	.
SEMA6C	10500	broad.mit.edu	36	1	149374692	149374692	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178061	exon14	c.C1432T	p.R478W	.	.	.
POGZ	23126	broad.mit.edu	36	1	149667450	149667450	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145796	exon4	c.C347A	p.P116H	.	.	.
CGN	57530	broad.mit.edu	36	1	149763927	149763927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020770	exon8	c.C1555T	p.R519W	.	.	.
HRNR	388697	broad.mit.edu	36	1	150458682	150458682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009931	exon3	c.G2047A	p.G683S	.	.	.
FLG	2312	broad.mit.edu	36	1	150544267	150544267	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.G9719A	p.R3240H	.	.	.
FLG	2312	broad.mit.edu	36	1	150552524	150552524	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.A1462G	p.S488G	.	.	.
PGLYRP4	57115	broad.mit.edu	36	1	151579671	151579671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020393	exon7	c.G634A	p.G212S	.	.	.
NPR1	4881	broad.mit.edu	36	1	151929057	151929057	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000906	exon19	c.G2909A	p.R970H	.	.	.
DENND4B	9909	broad.mit.edu	36	1	152179316	152179316	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014856	exon11	c.C1543T	p.R515C	.	.	.
CRTC2	200186	broad.mit.edu	36	1	152190437	152190437	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181715	exon11	c.G1327A	p.D443N	.	.	.
CRTC2	200186	broad.mit.edu	36	1	152190628	152190628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181715	exon11	c.G1136A	p.R379H	.	.	.
TPM3	7170	broad.mit.edu	36	1	152398146	152398146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001043353	exon8	c.C667T	p.R223C	.	.	.
UBAP2L	9898	broad.mit.edu	36	1	152500057	152500057	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014847	exon23	c.C2644G	p.P882A	.	.	.
HAX1	10456	broad.mit.edu	36	1	152512578	152512578	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006118	exon2	c.A196G	p.S66G	.	.	.
KCNN3	3782	broad.mit.edu	36	1	153011472	153011472	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170782	exon3	c.G136A	p.A46T	.	.	.
KAZ	23254	broad.mit.edu	36	1	15313646	15313646	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201628	exon15	c.C2256T	p.D752D	.	.	.
DCST2	127579	broad.mit.edu	36	1	153269633	153269633	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144622	exon6	c.G918T	p.M306I	.	.	.
SCAMP3	10067	broad.mit.edu	36	1	153497024	153497024	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052837	exon2	c.A117G	p.S39S	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153574785	153574785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon27	c.G8522A	p.R2841H	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154784568	154784568	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178229	exon19	c.G2225A	p.R742H	.	.	.
TTC24	164118	broad.mit.edu	36	1	154822417	154822417	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105669	exon10	c.G1623A	p.A541A	.	.	.
NTRK1	4914	broad.mit.edu	36	1	155115640	155115640	+	Silent	SNP	G	A	A	rs17838192	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012331	exon14	c.G1890A	p.A630A	.	.	.
C1orf92	149499	broad.mit.edu	36	1	155164035	155164035	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144702	exon7	c.C786A	p.N262K	.	.	.
FCRL4	83417	broad.mit.edu	36	1	155822783	155822783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031282	exon6	c.G934A	p.V312M	.	.	.
FCRL4	83417	broad.mit.edu	36	1	155823811	155823811	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031282	exon5	c.G726A	p.T242T	.	.	.
CD1C	911	broad.mit.edu	36	1	156526538	156526538	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001765	exon1	c.C60T	p.D20D	.	.	.
CD48	962	broad.mit.edu	36	1	158921566	158921566	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001778	exon2	c.C120T	p.N40N	.	.	.
ITLN1	55600	broad.mit.edu	36	1	159118424	159118424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017625	exon4	c.G352A	p.A118T	.	.	.
SLC25A34	284723	broad.mit.edu	36	1	15937214	15937214	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207348	exon3	c.G484T	p.G162W	.	.	.
USP21	27005	broad.mit.edu	36	1	159401489	159401489	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012475	exon12	c.C1539T	p.S513S	.	.	.
OLFML2B	25903	broad.mit.edu	36	1	160220123	160220123	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015441	exon8	c.A2219G	p.H740R	.	.	.
UHMK1	127933	broad.mit.edu	36	1	160736419	160736419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175866	exon2	c.C319T	p.R107C	.	.	.
LRRC52	440699	broad.mit.edu	36	1	163780366	163780366	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005214	exon1	c.C209T	p.A70V	.	.	.
FBXO42	54455	broad.mit.edu	36	1	16450459	16450459	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018994	exon10	c.G1447C	p.A483P	.	.	.
CD247	919	broad.mit.edu	36	1	165674463	165674463	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198053	exon4	c.C268T	p.R90C	.	.	.
MPZL1	9019	broad.mit.edu	36	1	166001584	166001584	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024569	exon2	c.C232T	p.P78S	.	.	.
GPR161	23432	broad.mit.edu	36	1	166340659	166340659	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153832	exon4	c.G54T	p.E18D	.	.	.
NECAP2	55707	broad.mit.edu	36	1	16654920	16654920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018090	exon7	c.C688T	p.P230S	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169234110	169234110	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025063	exon15	c.A1667T	p.Q556L	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169771866	169771866	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015172	exon14	c.G2112A	p.P704P	.	.	.
SDHB	6390	broad.mit.edu	36	1	17223071	17223071	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003000	exon6	c.C626A	p.P209H	.	.	.
TNR	7143	broad.mit.edu	36	1	173565861	173565861	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon21	c.C3765T	p.L1255L	.	.	.
RALGPS2	55103	broad.mit.edu	36	1	177113329	177113329	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152663	exon9	c.A681G	p.Q227Q	.	.	.
ABL2	27	broad.mit.edu	36	1	177357479	177357479	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168239	exon4	c.C726T	p.H242H	.	.	.
XPR1	9213	broad.mit.edu	36	1	179060938	179060938	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135669	exon9	c.C969T	p.L323L	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180007900	180007900	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon37	c.C5049T	p.T1683T	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180030743	180030743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon45	c.C6019T	p.R2007C	.	.	.
RGS16	6004	broad.mit.edu	36	1	180836078	180836078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002928	exon5	c.G581A	p.C194Y	.	.	.
RGL1	23179	broad.mit.edu	36	1	182133636	182133636	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015149	exon11	c.G1317C	p.L439L	.	.	.
TPR	7175	broad.mit.edu	36	1	184596652	184596652	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon10	c.G967T	p.A323S	.	.	.
KLHDC7A	127707	broad.mit.edu	36	1	18682143	18682143	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152375	exon1	c.G2081A	p.R694H	.	.	.
CDC73	79577	broad.mit.edu	36	1	191371187	191371187	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024529	exon4	c.T351C	p.G117G	.	.	.
CFH	3075	broad.mit.edu	36	1	194972665	194972665	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000186	exon16	c.A2502G	p.K834K	.	.	.
CRB1	23418	broad.mit.edu	36	1	195678006	195678006	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon11	c.C3966T	p.L1322L	.	.	.
NR5A2	2494	broad.mit.edu	36	1	198347006	198347006	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205860	exon6	c.C1164T	p.L388L	.	.	.
KIF14	9928	broad.mit.edu	36	1	198837663	198837663	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014875	exon11	c.C2136T	p.N712N	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201943687	201943687	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001396	exon10	c.C1389T	p.C463C	.	.	.
PIK3C2B	5287	broad.mit.edu	36	1	202683262	202683262	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002646	exon16	c.G2414A	p.R805H	.	.	.
NFASC	23114	broad.mit.edu	36	1	203190084	203190084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160331	exon3	c.C343T	p.R115C	.	.	.
PM20D1	148811	broad.mit.edu	36	1	204064410	204064410	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152491	exon13	c.C1470T	p.D490D	.	.	.
AVPR1B	553	broad.mit.edu	36	1	204391896	204391896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000707	exon1	c.G833A	p.R278Q	.	.	.
SRGAP2	23380	broad.mit.edu	36	1	204678063	204678063	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170637	exon13	c.C1497A	p.G499G	.	.	.
IKBKE	9641	broad.mit.edu	36	1	204714371	204714371	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193322	exon4	c.G162T	p.R54S	.	.	.
IKBKE	9641	broad.mit.edu	36	1	204714951	204714951	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193322	exon5	c.C349T	p.R117C	.	.	.
C4BPA	722	broad.mit.edu	36	1	205353090	205353090	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000715	exon2	c.C97A	p.L33I	.	.	.
CR2	1380	broad.mit.edu	36	1	205708773	205708773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006658	exon4	c.C640T	p.R214C	.	.	.
PLXNA2	5362	broad.mit.edu	36	1	206278941	206278941	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025179	exon25	c.C4512T	p.C1504C	.	.	.
HHAT	55733	broad.mit.edu	36	1	208827991	208827991	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018194	exon10	c.G1170A	p.A390A	.	.	.
KCNH1	3756	broad.mit.edu	36	1	209259011	209259011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002238	exon6	c.G769A	p.V257M	.	.	.
HP1BP3	50809	broad.mit.edu	36	1	20944028	20944028	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016287	exon13	c.C1511T	p.T504M	.	.	.
RD3	343035	broad.mit.edu	36	1	209719199	209719199	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164688	exon3	c.G390A	p.K130K	.	.	.
INTS7	25896	broad.mit.edu	36	1	210218370	210218370	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199809	exon10	c.G1190A	p.R397Q	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212633698	212633698	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005401	exon10	c.C892T	p.R298X	.	.	.
USH2A	7399	broad.mit.edu	36	1	214038963	214038963	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon50	c.C9867T	p.G3289G	.	.	.
SUSD4	55061	broad.mit.edu	36	1	221603326	221603326	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037175	exon2	c.A65G	p.Q22R	.	.	.
LBR	3930	broad.mit.edu	36	1	223666914	223666914	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194442	exon8	c.G949A	p.V317I	.	.	.
TMEM63A	9725	broad.mit.edu	36	1	224101408	224101408	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014698	exon24	c.C2380T	p.Q794X	.	.	.
LIN9	286826	broad.mit.edu	36	1	224520605	224520605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173083	exon9	c.C916T	p.R306W	.	.	.
PARP1	142	broad.mit.edu	36	1	224631601	224631601	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001618	exon13	c.G1772A	p.R591H	.	.	.
CDC42BPA	8476	broad.mit.edu	36	1	225399909	225399909	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014826	exon8	c.T1047C	p.D349D	.	.	.
ACTA1	58	broad.mit.edu	36	1	227634261	227634261	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100	exon6	c.G820A	p.A274T	.	.	.
NUP133	55746	broad.mit.edu	36	1	227667218	227667218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018230	exon18	c.C2327T	p.T776M	.	.	.
TTC13	79573	broad.mit.edu	36	1	229156731	229156731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024525	exon4	c.G484A	p.A162T	.	.	.
TRIM67	440730	broad.mit.edu	36	1	229365362	229365362	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004342	exon1	c.C24T	p.P8P	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230628149	230628149	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020808	exon16	c.G4439T	p.R1480M	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230667675	230667675	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020808	exon7	c.T2354A	p.I785N	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231460587	231460587	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon5	c.T1644C	p.I548I	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231461406	231461406	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon5	c.G825A	p.P275P	.	.	.
SLC35F3	148641	broad.mit.edu	36	1	232433890	232433890	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173508	exon3	c.G388T	p.A130S	.	.	.
MTR	4548	broad.mit.edu	36	1	235121175	235121175	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000254	exon29	c.G3127A	p.D1043N	.	.	.
RYR2	6262	broad.mit.edu	36	1	235560837	235560837	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon3	c.C205T	p.L69L	.	.	.
CHRM3	1131	broad.mit.edu	36	1	238137574	238137574	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000740	exon5	c.A200G	p.Q67R	.	.	.
FMN2	56776	broad.mit.edu	36	1	238437549	238437549	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020066	exon5	c.C2814T	p.P938P	.	.	.
FH	2271	broad.mit.edu	36	1	239734120	239734120	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000143	exon7	c.A953G	p.H318R	.	.	.
HMGCL	3155	broad.mit.edu	36	1	24007368	24007368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166059	exon5	c.C381T	p.Y127Y	.	.	.
ZNF496	84838	broad.mit.edu	36	1	245530694	245530694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032752	exon9	c.C1514T	p.A505V	.	.	.
OR2T8	343172	broad.mit.edu	36	1	246151527	246151527	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005522	exon1	c.C585T	p.N195N	.	.	.
UBXN11	91544	broad.mit.edu	36	1	26481993	26481993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077262	exon9	c.G740A	p.R247Q	.	.	.
LIN28A	79727	broad.mit.edu	36	1	26610618	26610618	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024674	exon2	c.C186T	p.A62A	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26960090	26960090	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006015	exon5	c.C2077T	p.R693X	.	.	.
AHDC1	27245	broad.mit.edu	36	1	27747644	27747644	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029882	exon6	c.A3570G	p.S1190S	.	.	.
COL16A1	1307	broad.mit.edu	36	1	31924282	31924282	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001856	exon28	c.G1881A	p.A627A	.	.	.
KHDRBS1	10657	broad.mit.edu	36	1	32271388	32271388	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006559	exon4	c.C637T	p.R213C	.	.	.
YARS	8565	broad.mit.edu	36	1	33020661	33020661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003680	exon9	c.C973T	p.R325W	.	.	.
PRDM16	63976	broad.mit.edu	36	1	3303016	3303016	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022114	exon5	c.C675T	p.D225D	.	.	.
HPCA	3208	broad.mit.edu	36	1	33127112	33127112	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002143	exon2	c.G26A	p.R9Q	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33805820	33805820	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon54	c.G8271A	p.Q2757Q	.	.	.
GJB4	127534	broad.mit.edu	36	1	34999653	34999653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153212	exon2	c.G211A	p.V71M	.	.	.
TEKT2	27285	broad.mit.edu	36	1	36325426	36325426	+	Missense_Mutation	SNP	C	T	T	rs41267269	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014466	exon7	c.C782T	p.T261M	.	.	.
LRRC47	57470	broad.mit.edu	36	1	3693353	3693353	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020710	exon2	c.C997T	p.R333W	.	.	.
C1orf174	339448	broad.mit.edu	36	1	3796408	3796408	+	Silent	SNP	G	A	A	rs61737469	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207356	exon4	c.C708T	p.D236D	.	.	.
MACF1	23499	broad.mit.edu	36	1	39685707	39685707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon78	c.C13445T	p.A4482V	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42883030	42883030	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080850	exon13	c.C1855T	p.R619X	.	.	.
TIE1	7075	broad.mit.edu	36	1	43551602	43551602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005424	exon13	c.C2137T	p.R713C	.	.	.
SLC6A9	6536	broad.mit.edu	36	1	44235861	44235861	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201649	exon14	c.G2064A	p.A688A	.	.	.
DMAP1	55929	broad.mit.edu	36	1	44457416	44457416	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034023	exon7	c.G822A	p.A274A	.	.	.
HECTD3	79654	broad.mit.edu	36	1	45247420	45247420	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024602	exon7	c.G1055A	p.R352H	.	.	.
RAD54L	8438	broad.mit.edu	36	1	46505781	46505781	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142548	exon10	c.C955T	p.R319W	.	.	.
FAAH	2166	broad.mit.edu	36	1	46646834	46646834	+	Silent	SNP	G	T	T	rs45476901	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001441	exon8	c.G1068T	p.A356A	.	.	.
CDKN2C	1031	broad.mit.edu	36	1	51212253	51212253	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_078626	exon2	c.C230T	p.A77V	.	.	.
ORC1	4998	broad.mit.edu	36	1	52626771	52626771	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190818	exon8	c.T1314G	p.T438T	.	.	.
HSPB11	51668	broad.mit.edu	36	1	54159953	54159953	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016126	exon6	c.G394A	p.V132I	.	.	.
DAB1	1600	broad.mit.edu	36	1	57249037	57249037	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021080	exon16	c.G1587T	p.Q529H	.	.	.
NPHP4	261734	broad.mit.edu	36	1	5888320	5888320	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015102	exon14	c.G1722A	p.T574T	.	.	.
MYSM1	114803	broad.mit.edu	36	1	58911896	58911896	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085487	exon11	c.T1509C	p.R503R	.	.	.
INADL	10207	broad.mit.edu	36	1	62102498	62102498	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176877	exon20	c.G2440A	p.G814R	.	.	.
GPR153	387509	broad.mit.edu	36	1	6233134	6233134	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207370	exon5	c.C1117T	p.L373F	.	.	.
ROR1	4919	broad.mit.edu	36	1	64417079	64417079	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005012	exon9	c.G2767T	p.A923S	.	.	.
RAVER2	55225	broad.mit.edu	36	1	65016111	65016111	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018211	exon3	c.T534C	p.V178V	.	.	.
LEPR	3953	broad.mit.edu	36	1	65859670	65859670	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003679	exon18	c.G2538A	p.V846V	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6650424	6650424	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018198	exon4	c.C310T	p.R104X	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79129943	79129943	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022159	exon14	c.G1864A	p.A622T	.	.	.
PARK7	11315	broad.mit.edu	36	1	7948023	7948023	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007262	exon3	c.G143A	p.R48H	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82181826	82181826	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012302	exon5	c.A983G	p.Y328C	.	.	.
LPAR3	23566	broad.mit.edu	36	1	85103755	85103755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012152	exon2	c.G637A	p.V213I	.	.	.
COL24A1	255631	broad.mit.edu	36	1	86296210	86296210	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152890	exon10	c.G1843T	p.G615C	.	.	.
PKN2	5586	broad.mit.edu	36	1	89071645	89071645	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006256	exon22	c.C2881T	p.R961X	.	.	.
AGRN	375790	broad.mit.edu	36	1	979177	979177	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198576	exon34	c.G5833A	p.V1945M	.	.	.
PALMD	54873	broad.mit.edu	36	1	99927060	99927060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017734	exon7	c.C656T	p.A219V	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226501091	226501091	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon13	c.3997delG	p.G1333fs	.	.	.
RYR2	6262	broad.mit.edu	36	1	235844281	235844281	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon37	c.5230delA	p.K1744fs	.	.	.
GBP5	115362	broad.mit.edu	36	1	89505716	89505716	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134486	exon4	c.400delA	p.I134fs	.	.	.
PCSK2	5126	broad.mit.edu	36	20	17365497	17365497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002594	exon8	c.C854T	p.T285M	.	.	.
XRN2	22803	broad.mit.edu	36	20	21294263	21294263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012255	exon26	c.C2377T	p.R793W	.	.	.
ACSS1	84532	broad.mit.edu	36	20	24937998	24937998	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032501	exon13	c.G1798A	p.D600N	.	.	.
ACSS1	84532	broad.mit.edu	36	20	24941513	24941513	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032501	exon11	c.C1642T	p.R548W	.	.	.
ZNF337	26152	broad.mit.edu	36	20	25605018	25605018	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015655	exon5	c.C906T	p.N302N	.	.	.
NRSN2	80023	broad.mit.edu	36	20	281980	281980	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024958	exon4	c.G316T	p.A106S	.	.	.
TTLL9	164395	broad.mit.edu	36	20	29960056	29960056	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008409	exon5	c.G208A	p.E70K	.	.	.
C20orf160	140706	broad.mit.edu	36	20	30066402	30066402	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080625	exon2	c.C65T	p.P22L	.	.	.
C20orf112	140688	broad.mit.edu	36	20	30503766	30503766	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080616	exon7	c.G1024A	p.G342R	.	.	.
ProSAPiP1	9762	broad.mit.edu	36	20	3094855	3094855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014731	exon2	c.G611A	p.R204Q	.	.	.
SLC4A11	83959	broad.mit.edu	36	20	3162824	3162824	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174090	exon5	c.T557G	p.F186C	.	.	.
TRPC4AP	26133	broad.mit.edu	36	20	33096094	33096094	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199368	exon7	c.G740A	p.R247Q	.	.	.
MMP24	10893	broad.mit.edu	36	20	33305950	33305950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006690	exon4	c.C635T	p.T212M	.	.	.
CEP250	11190	broad.mit.edu	36	20	33555856	33555856	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon30	c.A6245G	p.Q2082R	.	.	.
CEP250	11190	broad.mit.edu	36	20	33556079	33556079	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon30	c.G6468T	p.Q2156H	.	.	.
NFS1	9054	broad.mit.edu	36	20	33726505	33726505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021100	exon8	c.G824A	p.R275H	.	.	.
SAMHD1	25939	broad.mit.edu	36	20	34978559	34978559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015474	exon9	c.C1042T	p.R348C	.	.	.
KIAA1755	85449	broad.mit.edu	36	20	36301411	36301411	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029864	exon4	c.A1680G	p.P560P	.	.	.
HSPA12B	116835	broad.mit.edu	36	20	3670951	3670951	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197327	exon4	c.C162A	p.P54P	.	.	.
FAM83D	81610	broad.mit.edu	36	20	37014410	37014410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030919	exon4	c.C1681T	p.R561W	.	.	.
PLCG1	5335	broad.mit.edu	36	20	39231548	39231548	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002660	exon23	c.G2618A	p.R873Q	.	.	.
ZHX3	23051	broad.mit.edu	36	20	39264173	39264173	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015035	exon3	c.G2798A	p.R933H	.	.	.
MYBL2	4605	broad.mit.edu	36	20	41764584	41764584	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002466	exon8	c.C992A	p.P331H	.	.	.
ZSWIM3	140831	broad.mit.edu	36	20	43940620	43940620	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080752	exon2	c.C2016T	p.G672G	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44022738	44022738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022095	exon12	c.G1706A	p.R569H	.	.	.
SLC12A5	57468	broad.mit.edu	36	20	44099357	44099357	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020708	exon6	c.G538A	p.V180M	.	.	.
SLC35C2	51006	broad.mit.edu	36	20	44412508	44412508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173073	exon10	c.C967T	p.R323W	.	.	.
PREX1	57580	broad.mit.edu	36	20	46699515	46699515	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon25	c.T3035G	p.L1012R	.	.	.
PREX1	57580	broad.mit.edu	36	20	46703317	46703317	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon20	c.G2335A	p.E779K	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47063533	47063533	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006420	exon29	c.A3944G	p.D1315G	.	.	.
SPATA2	9825	broad.mit.edu	36	20	47956153	47956153	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135773	exon3	c.C973T	p.R325C	.	.	.
ADNP	23394	broad.mit.edu	36	20	48944198	48944198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015339	exon5	c.C460T	p.P154S	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49721198	49721198	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006045	exon12	c.G1043A	p.R348H	.	.	.
SALL4	57167	broad.mit.edu	36	20	49839983	49839983	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020436	exon2	c.C2446T	p.R816C	.	.	.
GPCPD1	56261	broad.mit.edu	36	20	5507069	5507069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019593	exon8	c.C662T	p.T221M	.	.	.
CTCFL	140690	broad.mit.edu	36	20	55532490	55532490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080618	exon2	c.G178A	p.V60I	.	.	.
ZBP1	81030	broad.mit.edu	36	20	55618798	55618798	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160417	exon7	c.G903A	p.S301S	.	.	.
NPEPL1	79716	broad.mit.edu	36	20	56702957	56702957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024663	exon3	c.C410T	p.P137L	.	.	.
C20orf177	63939	broad.mit.edu	36	20	57952979	57952979	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190826	exon5	c.G586A	p.V196I	.	.	.
CDH26	60437	broad.mit.edu	36	20	57993229	57993229	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177980	exon6	c.C682T	p.R228X	.	.	.
CDH4	1002	broad.mit.edu	36	20	59882234	59882234	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001794	exon7	c.C933T	p.N311N	.	.	.
C20orf151	140893	broad.mit.edu	36	20	60424239	60424239	+	Nonsense_Mutation	SNP	C	A	A	rs6121579	byHapMap	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080833	exon7	c.G544T	p.E182X	.	.	.
DIDO1	11083	broad.mit.edu	36	20	61009051	61009051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022105	exon5	c.G1267A	p.A423T	.	.	.
C20orf54	113278	broad.mit.edu	36	20	693857	693857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033409	exon2	c.G562A	p.A188T	.	.	.
LTN1	26046	broad.mit.edu	36	21	29261266	29261266	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015565	exon10	c.C1556T	p.T519M	.	.	.
LTN1	26046	broad.mit.edu	36	21	29280960	29280960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015565	exon2	c.G347A	p.R116Q	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31546317	31546317	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003253	exon6	c.C1023T	p.T341T	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33045360	33045360	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013329	exon9	c.C1548T	p.R516R	.	.	.
ATP5O	539	broad.mit.edu	36	21	34201540	34201540	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001697	exon5	c.T416C	p.V139A	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40368950	40368950	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001389	exon27	c.A4772C	p.E1591A	.	.	.
MX2	4600	broad.mit.edu	36	21	41689495	41689495	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002463	exon7	c.G983A	p.R328Q	.	.	.
MX1	4599	broad.mit.edu	36	21	41729750	41729750	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144925	exon8	c.C222T	p.A74A	.	.	.
C2CD2	25966	broad.mit.edu	36	21	42200947	42200947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199050	exon8	c.C569T	p.A190V	.	.	.
UBASH3A	53347	broad.mit.edu	36	21	42736497	42736497	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001895	exon12	c.G1524A	p.A508A	.	.	.
WDR4	10785	broad.mit.edu	36	21	43152864	43152864	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033661	exon6	c.G604A	p.G202R	.	.	.
SIK1	150094	broad.mit.edu	36	21	43665988	43665988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173354	exon5	c.G457A	p.E153K	.	.	.
C21orf33	8209	broad.mit.edu	36	21	44389184	44389184	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198155	exon6	c.C639T	p.C213C	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44662850	44662850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003307	exon22	c.G3445A	p.E1149K	.	.	.
KRTAP10-7	386675	broad.mit.edu	36	21	44845826	44845826	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198689	exon2	c.T862C	p.C288R	.	.	.
COL18A1	80781	broad.mit.edu	36	21	45731831	45731831	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030582	exon16	c.C2416T	p.R806X	.	.	.
LSS	4047	broad.mit.edu	36	21	46467014	46467014	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145437	exon3	c.G146A	p.R49Q	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46510310	46510310	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003906	exon11	c.G2988A	p.A996A	.	.	.
PCNT	5116	broad.mit.edu	36	21	46674494	46674494	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006031	exon36	c.C7833T	p.S2611S	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46796040	46796040	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146114	exon22	c.G2713A	p.G905R	.	.	.
TPTE	7179	broad.mit.edu	36	21	9973240	9973240	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199259	exon9	c.T289A	p.F97I	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39589544	39589545	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033656	exon7	c.603_604del	p.201_202del	.	.	.
TBX1	6899	broad.mit.edu	36	22	18146797	18146798	+	Frame_Shift_Ins	INS	-	AG	AG	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080646	exon9	c.1064_1065insAG	p.P355fs	.	.	.
CECR2	27443	broad.mit.edu	36	22	16401577	16401577	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031413	exon14	c.C1870T	p.P624S	.	.	.
MICAL3	57553	broad.mit.edu	36	22	16684842	16684842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015241	exon24	c.G3402A	p.S1134S	.	.	.
PPIL2	23759	broad.mit.edu	36	22	20371233	20371233	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148176	exon12	c.C843T	p.Y281Y	.	.	.
CHCHD10	400916	broad.mit.edu	36	22	22438331	22438331	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213720	exon3	c.G393A	p.Q131Q	.	.	.
MMP11	4320	broad.mit.edu	36	22	22455612	22455612	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005940	exon8	c.C1348A	p.L450M	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22786510	22786510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199281	exon12	c.C1523T	p.A508V	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22821942	22821942	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199281	exon25	c.G3835A	p.D1279N	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24498327	24498327	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon7	c.C1719T	p.V573V	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24503603	24503603	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon8	c.G1923A	p.Q641Q	.	.	.
ASPHD2	57168	broad.mit.edu	36	22	25160455	25160455	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020437	exon2	c.C874T	p.R292X	.	.	.
NF2	4771	broad.mit.edu	36	22	28397836	28397836	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000268	exon11	c.C1021T	p.R341X	 NF2,soft_tissue,nerve_sheath,Substitution - Nonsense,0 	.	.
SEC14L4	284904	broad.mit.edu	36	22	29217872	29217872	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161368	exon10	c.G860A	p.G287D	.	.	.
DEPDC5	9681	broad.mit.edu	36	22	30619604	30619604	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014662	exon38	c.A3977G	p.D1326G	.	.	.
SLC5A4	6527	broad.mit.edu	36	22	30951682	30951682	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014227	exon12	c.T1409C	p.V470A	.	.	.
SLC5A4	6527	broad.mit.edu	36	22	30956992	30956992	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014227	exon10	c.C1092T	p.Y364Y	.	.	.
MYH9	4627	broad.mit.edu	36	22	35040168	35040168	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002473	exon13	c.C1522A	p.L508M	.	.	.
TST	7263	broad.mit.edu	36	22	35737046	35737046	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003312	exon3	c.C862T	p.R288C	.	.	.
ELFN2	114794	broad.mit.edu	36	22	36100486	36100486	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052906	exon3	c.C1035T	p.I345I	.	.	.
SOX10	6663	broad.mit.edu	36	22	36699831	36699831	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006941	exon4	c.G1018A	p.V340M	.	.	.
SLC16A8	23539	broad.mit.edu	36	22	36804402	36804402	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013356	exon5	c.G1454A	p.R485Q	.	.	.
JOSD1	9929	broad.mit.edu	36	22	37413889	37413889	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014876	exon4	c.G573T	p.E191D	.	.	.
APOBEC3C	27350	broad.mit.edu	36	22	37741617	37741617	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014508	exon2	c.G89A	p.R30Q	.	.	.
APOBEC3C	27350	broad.mit.edu	36	22	37743907	37743907	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014508	exon3	c.G365A	p.R122H	.	.	.
CBX7	23492	broad.mit.edu	36	22	37864601	37864601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175709	exon4	c.C232T	p.R78W	.	.	.
TNRC6B	23112	broad.mit.edu	36	22	38987897	38987897	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015088	exon4	c.C231T	p.N77N	.	.	.
MKL1	57591	broad.mit.edu	36	22	39161457	39161457	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020831	exon5	c.C55T	p.R19W	.	.	.
RANGAP1	5905	broad.mit.edu	36	22	39975292	39975292	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002883	exon15	c.C1682T	p.A561V	.	.	.
POLDIP3	84271	broad.mit.edu	36	22	41311772	41311772	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178136	exon8	c.C1148T	p.T383M	.	.	.
PACSIN2	11252	broad.mit.edu	36	22	41619475	41619475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184971	exon3	c.G149A	p.R50H	.	.	.
C22orf9	23313	broad.mit.edu	36	22	43980421	43980421	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015264	exon3	c.C268T	p.R90W	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48664257	48664257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014838	exon2	c.C943T	p.R315W	.	.	.
MLC1	23209	broad.mit.edu	36	22	48865383	48865383	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015166	exon2	c.G76A	p.A26T	.	.	.
CPT1B	1375	broad.mit.edu	36	22	49359834	49359834	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152246	exon8	c.C839T	p.A280V	.	.	.
SHANK3	85358	broad.mit.edu	36	22	49463936	49463936	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080420	exon4	c.C397T	p.R133C	.	.	.
SHANK3	85358	broad.mit.edu	36	22	49464679	49464679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080420	exon7	c.C842T	p.A281V	.	.	.
MN1	4330	broad.mit.edu	36	22	26526403	26526403	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002430	exon1	c.129delG	p.G43fs	.	.	.
NPAS2	4862	broad.mit.edu	36	2	100960679	100960679	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002518	exon15	c.G1468A	p.A490T	.	.	.
TBC1D8	11138	broad.mit.edu	36	2	101016649	101016649	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102426	exon10	c.C1562T	p.A521V	.	.	.
ODC1	4953	broad.mit.edu	36	2	10499397	10499397	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002539	exon10	c.A1023G	p.Q341Q	.	.	.
GPR45	11250	broad.mit.edu	36	2	105225631	105225631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007227	exon1	c.G884A	p.R295H	.	.	.
UXS1	80146	broad.mit.edu	36	2	106128103	106128103	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025076	exon6	c.C432T	p.D144D	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108750085	108750085	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006267	exon20	c.C6658T	p.P2220S	.	.	.
SH3RF3	344558	broad.mit.edu	36	2	109330658	109330658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099289	exon2	c.C670T	p.R224W	.	.	.
POLR1B	84172	broad.mit.edu	36	2	113049063	113049063	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137604	exon14	c.G2526A	p.P842P	.	.	.
PSD4	23550	broad.mit.edu	36	2	113667350	113667350	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012455	exon8	c.G1964A	p.R655Q	.	.	.
ACTR3	10096	broad.mit.edu	36	2	114425814	114425814	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005721	exon10	c.T999C	p.R333R	.	.	.
DPP10	57628	broad.mit.edu	36	2	116242371	116242371	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178036	exon14	c.G992A	p.G331D	.	.	.
GREB1	9687	broad.mit.edu	36	2	11684618	11684618	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014668	exon25	c.G4386A	p.A1462A	.	.	.
TMEM37	140738	broad.mit.edu	36	2	119910966	119910966	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183240	exon2	c.G53A	p.R18H	.	.	.
PTPN4	5775	broad.mit.edu	36	2	120408883	120408883	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002830	exon15	c.C1234T	p.R412X	.	.	.
EPB41L5	57669	broad.mit.edu	36	2	120552587	120552587	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184937	exon10	c.C763A	p.L255I	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124716337	124716337	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130773	exon3	c.C278T	p.T93M	.	.	.
CYP27C1	339761	broad.mit.edu	36	2	127667148	127667148	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001665	exon7	c.G994A	p.V332M	.	.	.
TRIB2	28951	broad.mit.edu	36	2	12797933	12797933	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021643	exon3	c.C594T	p.D198D	.	.	.
WDR33	55339	broad.mit.edu	36	2	128199128	128199128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018383	exon9	c.G983A	p.R328Q	.	.	.
AMMECR1L	83607	broad.mit.edu	36	2	128344938	128344938	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199140	exon5	c.C553T	p.R185X	.	.	.
TUBA3D	113457	broad.mit.edu	36	2	131956724	131956724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080386	exon5	c.G1186A	p.D396N	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133256421	133256421	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207363	exon14	c.T4433A	p.L1478X	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133264211	133264211	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207481	exon13	c.C947A	p.P316H	.	.	.
LCT	3938	broad.mit.edu	36	2	136277986	136277986	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002299	exon11	c.C4647T	p.Y1549Y	.	.	.
LCT	3938	broad.mit.edu	36	2	136286915	136286915	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002299	exon7	c.G1789A	p.V597M	.	.	.
MCM6	4175	broad.mit.edu	36	2	136336741	136336741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005915	exon8	c.G1126A	p.V376I	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140809742	140809742	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon78	c.G12028A	p.V4010I	.	.	.
TPO	7173	broad.mit.edu	36	2	1479443	1479443	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175721	exon12	c.G2285A	p.R762H	.	.	.
MBD5	55777	broad.mit.edu	36	2	148943145	148943145	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018328	exon9	c.A1163G	p.Q388R	.	.	.
NEB	4703	broad.mit.edu	36	2	152079623	152079623	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon158	c.G22971A	p.T7657T	.	.	.
NEB	4703	broad.mit.edu	36	2	152105112	152105112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon138	c.G20884A	p.A6962T	.	.	.
CACNB4	785	broad.mit.edu	36	2	152435309	152435309	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145798	exon8	c.G681A	p.P227P	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157824168	157824168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014568	exon1	c.G1328A	p.R443H	.	.	.
TANC1	85461	broad.mit.edu	36	2	159743400	159743400	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033394	exon14	c.G1990A	p.V664I	.	.	.
LY75	4065	broad.mit.edu	36	2	160443208	160443208	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198760	exon11	c.T1647A	p.D549E	.	.	.
TBR1	10716	broad.mit.edu	36	2	161981367	161981367	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006593	exon1	c.A200T	p.N67I	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162465758	162465758	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178016	exon12	c.G1376A	p.R459Q	.	.	.
KCNH7	90134	broad.mit.edu	36	2	162988151	162988151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173162	exon8	c.C2074T	p.R692C	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163069222	163069222	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173162	exon5	c.A1084G	p.N362D	.	.	.
SLC38A11	151258	broad.mit.edu	36	2	165479937	165479937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173512	exon7	c.G547A	p.V183M	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165878392	165878392	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon8	c.T1051A	p.Y351N	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165909413	165909413	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon15	c.G2665A	p.A889T	.	.	.
CSRNP3	80034	broad.mit.edu	36	2	166243900	166243900	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172173	exon7	c.G1149T	p.E383D	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167810889	167810889	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C4075T	p.R1359X	.	.	.
LRP2	4036	broad.mit.edu	36	2	169798277	169798277	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon30	c.G4988A	p.R1663H	.	.	.
LRP2	4036	broad.mit.edu	36	2	169809534	169809534	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon22	c.C3345T	p.T1115T	.	.	.
LRP2	4036	broad.mit.edu	36	2	169855740	169855740	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon8	c.T783C	p.H261H	.	.	.
KBTBD10	10324	broad.mit.edu	36	2	170079431	170079431	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006063	exon2	c.A1212G	p.A404A	.	.	.
METAP1D	254042	broad.mit.edu	36	2	172636805	172636805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199227	exon3	c.G319A	p.V107I	.	.	.
SP3	6670	broad.mit.edu	36	2	174491613	174491613	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172712	exon5	c.C1777T	p.R593W	.	.	.
SCRN3	79634	broad.mit.edu	36	2	174977085	174977085	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024583	exon5	c.C550T	p.R184C	.	.	.
TTN	7273	broad.mit.edu	36	2	179104400	179104400	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon186	c.C77992A	p.L25998M	.	.	.
TTN	7273	broad.mit.edu	36	2	179129831	179129831	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon158	c.C61100T	p.S20367L	.	.	.
TTN	7273	broad.mit.edu	36	2	179157327	179157327	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon139	c.A38001G	p.S12667S	.	.	.
TTN	7273	broad.mit.edu	36	2	179180137	179180137	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon106	c.C26242T	p.Q8748X	.	.	.
TTN	7273	broad.mit.edu	36	2	179295437	179295437	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon74	c.G18590A	p.R6197Q	.	.	.
KCNS3	3790	broad.mit.edu	36	2	17976440	17976440	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002252	exon3	c.G684A	p.A228A	.	.	.
NT5C1B	93034	broad.mit.edu	36	2	18629401	18629401	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033253	exon4	c.G583A	p.A195T	.	.	.
STAT1	6772	broad.mit.edu	36	2	191553610	191553610	+	Missense_Mutation	SNP	G	A	A	rs1803838	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007315	exon19	c.C1613T	p.P538L	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1925993	1925993	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon9	c.C273T	p.D91D	.	.	.
HSPD1	3329	broad.mit.edu	36	2	198066398	198066398	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002156	exon7	c.A764G	p.Q255R	.	.	.
HSPD1	3329	broad.mit.edu	36	2	198070230	198070230	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002156	exon3	c.C306A	p.A102A	.	.	.
PUM2	23369	broad.mit.edu	36	2	20341903	20341903	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015317	exon12	c.C1879T	p.P627S	.	.	.
PARD3B	117583	broad.mit.edu	36	2	205694761	205694761	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057177	exon8	c.C1008T	p.T336T	.	.	.
GPR1	2825	broad.mit.edu	36	2	206749427	206749427	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098199	exon3	c.C790A	p.L264M	.	.	.
HS1BP3	64342	broad.mit.edu	36	2	20688078	20688078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022460	exon5	c.C679T	p.R227W	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882566	206882566	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G5069A	p.R1690Q	.	.	.
KLF7	8609	broad.mit.edu	36	2	207661508	207661508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003709	exon3	c.G776A	p.R259H	.	.	.
PLEKHM3	389072	broad.mit.edu	36	2	208549971	208549971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080475	exon3	c.G1195A	p.E399K	.	.	.
APOB	338	broad.mit.edu	36	2	21084185	21084185	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.G9060A	p.R3020R	.	.	.
ATIC	471	broad.mit.edu	36	2	215898996	215898996	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004044	exon6	c.C421T	p.R141X	.	.	.
FN1	2335	broad.mit.edu	36	2	215964674	215964674	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon25	c.A3905G	p.Y1302C	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219600630	219600630	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194302	exon13	c.T2197A	p.F733I	.	.	.
PTPRN	5798	broad.mit.edu	36	2	219870374	219870374	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199764	exon14	c.C1643T	p.T548M	.	.	.
TMEM198	130612	broad.mit.edu	36	2	220122740	220122740	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005209	exon5	c.G1003A	p.A335T	.	.	.
OBSL1	23363	broad.mit.edu	36	2	220139823	220139823	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173431	exon5	c.C2107T	p.Q703X	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220212601	220212601	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005070	exon20	c.G3177A	p.A1059A	.	.	.
SERPINE2	5270	broad.mit.edu	36	2	224557727	224557727	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136530	exon5	c.G906A	p.Q302Q	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155510	226155510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020864	exon4	c.C1133T	p.A378V	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230358815	230358815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004238	exon33	c.C4771T	p.R1591C	.	.	.
COPS7B	64708	broad.mit.edu	36	2	232380474	232380474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022730	exon7	c.G670A	p.A224T	.	.	.
DIS3L2	129563	broad.mit.edu	36	2	232903717	232903717	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152383	exon16	c.C1997T	p.S666F	.	.	.
ALPI	248	broad.mit.edu	36	2	233030595	233030595	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001631	exon6	c.A725G	p.Q242R	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234523479	234523479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024080	exon9	c.C1090T	p.R364C	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234534330	234534330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024080	exon12	c.G1534A	p.A512T	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237918440	237918440	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon31	c.C5341T	p.P1781S	.	.	.
RAMP1	10267	broad.mit.edu	36	2	238450673	238450673	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005855	exon2	c.C121A	p.L41I	.	.	.
NDUFA10	4705	broad.mit.edu	36	2	240609460	240609460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004544	exon3	c.G287T	p.S96I	.	.	.
MFSD2B	388931	broad.mit.edu	36	2	24099241	24099241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080473	exon10	c.C1024T	p.R342C	.	.	.
SNED1	25992	broad.mit.edu	36	2	241621926	241621926	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080437	exon3	c.C603T	p.S201S	.	.	.
HDLBP	3069	broad.mit.edu	36	2	241818911	241818911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005336	exon25	c.G3410A	p.R1137H	.	.	.
HDLBP	3069	broad.mit.edu	36	2	241821947	241821947	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005336	exon24	c.C3249T	p.D1083D	.	.	.
THAP4	51078	broad.mit.edu	36	2	242222039	242222039	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015963	exon2	c.T206A	p.L69Q	.	.	.
ING5	84289	broad.mit.edu	36	2	242300104	242300104	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032329	exon5	c.C427T	p.R143X	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24806131	24806131	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003743	exon15	c.G3144A	p.P1048P	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24818411	24818411	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003743	exon17	c.G3558A	p.P1186P	.	.	.
KIF3C	3797	broad.mit.edu	36	2	26057469	26057469	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002254	exon1	c.C822T	p.G274G	.	.	.
OTOF	9381	broad.mit.edu	36	2	26549542	26549542	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194323	exon12	c.G1454A	p.R485Q	.	.	.
MAPRE3	22924	broad.mit.edu	36	2	27102661	27102661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012326	exon7	c.G787A	p.A263T	.	.	.
TMEM214	54867	broad.mit.edu	36	2	27116771	27116771	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083590	exon15	c.C1711T	p.L571L	.	.	.
IFT172	26160	broad.mit.edu	36	2	27539476	27539476	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon19	c.C2014T	p.R672W	.	.	.
PLB1	151056	broad.mit.edu	36	2	28618134	28618134	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170585	exon13	c.C864T	p.T288T	.	.	.
FAM179A	165186	broad.mit.edu	36	2	29079928	29079928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199280	exon6	c.G706A	p.V236M	.	.	.
ALK	238	broad.mit.edu	36	2	29460183	29460183	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004304	exon5	c.C1201T	p.R401X	 ALK,ovary,NS,Substitution - Nonsense,0 	.	.
EHD3	30845	broad.mit.edu	36	2	31342676	31342676	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014600	exon6	c.C1210T	p.R404W	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33475804	33475804	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000627	exon29	c.C3957T	p.C1319C	.	.	.
RASGRP3	25780	broad.mit.edu	36	2	33617681	33617681	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170672	exon13	c.C1178T	p.T393M	.	.	.
QPCT	25797	broad.mit.edu	36	2	37453467	37453467	+	Missense_Mutation	SNP	A	G	G	rs4670696	byCluster;byFrequency;byHapMap	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012413	exon7	c.A1079G	p.H360R	.	.	.
DHX57	90957	broad.mit.edu	36	2	38942933	38942933	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198963	exon4	c.A430G	p.N144D	.	.	.
HAAO	23498	broad.mit.edu	36	2	42864010	42864010	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012205	exon4	c.G298A	p.V100M	.	.	.
PLEKHH2	130271	broad.mit.edu	36	2	43842983	43842983	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172069	exon28	c.T4108C	p.W1370R	.	.	.
LRPPRC	10128	broad.mit.edu	36	2	43986420	43986420	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133259	exon31	c.G3279A	p.A1093A	.	.	.
SLC3A1	6519	broad.mit.edu	36	2	44356489	44356489	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000341	exon1	c.C311T	p.T104I	.	.	.
NRXN1	9378	broad.mit.edu	36	2	51108625	51108625	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon2	c.C291T	p.C97C	.	.	.
TSPYL6	388951	broad.mit.edu	36	2	54335789	54335789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003937	exon1	c.G1004A	p.G335E	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54703108	54703108	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003128	exon9	c.C1044T	p.R348R	.	.	.
MTIF2	4528	broad.mit.edu	36	2	55333221	55333221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005369	exon9	c.C737T	p.A246V	.	.	.
PAPOLG	64895	broad.mit.edu	36	2	60852227	60852227	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022894	exon7	c.C562T	p.R188C	.	.	.
USP34	9736	broad.mit.edu	36	2	61398368	61398368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon23	c.C3207T	p.G1069G	.	.	.
SLC1A4	6509	broad.mit.edu	36	2	65097175	65097175	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003038	exon5	c.G898A	p.A300T	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65394501	65394501	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181784	exon6	c.C895T	p.R299W	.	.	.
PNO1	56902	broad.mit.edu	36	2	68239163	68239163	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020143	exon2	c.A355G	p.R119G	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68736078	68736078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138964	exon2	c.G1048A	p.V350I	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68855988	68855988	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166276	exon1	c.C172T	p.Q58X	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68906765	68906765	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166276	exon10	c.A1855G	p.K619E	.	.	.
C2orf78	388960	broad.mit.edu	36	2	73897127	73897127	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080474	exon3	c.A2269G	p.T757A	.	.	.
PCGF1	84759	broad.mit.edu	36	2	74586689	74586689	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032673	exon5	c.C428A	p.P143Q	.	.	.
REG1A	5967	broad.mit.edu	36	2	79203565	79203565	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002909	exon5	c.G412A	p.V138M	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8843377	8843377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020738	exon17	c.G2174A	p.R725H	.	.	.
KIAA1310	55683	broad.mit.edu	36	2	96631724	96631724	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115016	exon19	c.A2338G	p.I780V	.	.	.
FER1L5	90342	broad.mit.edu	36	2	96729460	96729460	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113382	exon43	c.C4927T	p.R1643W	.	.	.
ZAP70	7535	broad.mit.edu	36	2	97720709	97720709	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207519	exon4	c.C619T	p.R207C	.	.	.
VWA3B	200403	broad.mit.edu	36	2	98145839	98145839	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144992	exon8	c.C1082A	p.P361H	.	.	.
INPP4A	3631	broad.mit.edu	36	2	98537189	98537189	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134225	exon15	c.C1371T	p.C457C	.	.	.
LYG1	129530	broad.mit.edu	36	2	99274310	99274310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174898	exon5	c.G155A	p.R52H	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179429234	179429234	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173648	exon18	c.2860delA	p.M954fs	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186381856	186381856	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173651	exon17	c.19845delA	p.G6615fs	.	.	.
TOMM70A	9868	broad.mit.edu	36	3	101587800	101587800	+	Missense_Mutation	SNP	G	A	A	rs9833995	byHapMap	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014820	exon3	c.C577T	p.R193C	.	.	.
LNP1	348801	broad.mit.edu	36	3	101657431	101657431	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085451	exon4	c.G508T	p.A170S	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	102049138	102049138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015429	exon17	c.C1520T	p.P507L	.	.	.
IRAK2	3656	broad.mit.edu	36	3	10226350	10226350	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001570	exon4	c.G502A	p.D168N	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113807191	113807191	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon8	c.C2616T	p.D872D	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113808752	113808752	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon7	c.G2467T	p.E823X	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113840829	113840829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon2	c.G614A	p.S205N	.	.	.
KIAA1407	57577	broad.mit.edu	36	3	115179866	115179866	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020817	exon16	c.C2463T	p.Y821Y	.	.	.
VGLL4	9686	broad.mit.edu	36	3	11719445	11719445	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014667	exon2	c.C64T	p.R22C	.	.	.
PLA1A	51365	broad.mit.edu	36	3	120819630	120819630	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015900	exon7	c.C829T	p.L277L	.	.	.
TIMP4	7079	broad.mit.edu	36	3	12170178	12170178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003256	exon5	c.C512T	p.S171L	.	.	.
KPNA1	3836	broad.mit.edu	36	3	123651144	123651144	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002264	exon9	c.C884T	p.A295V	.	.	.
MYLK	4638	broad.mit.edu	36	3	124935665	124935665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053025	exon10	c.G868A	p.A290T	.	.	.
MUC13	56667	broad.mit.edu	36	3	126112001	126112001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033049	exon10	c.G1285A	p.A429T	.	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127307304	127307304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012190	exon22	c.G2608A	p.A870T	.	.	.
ZXDC	79364	broad.mit.edu	36	3	127643319	127643319	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025112	exon8	c.C2373T	p.G791G	.	.	.
PLXNA1	5361	broad.mit.edu	36	3	128218994	128218994	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032242	exon17	c.C3313T	p.R1105C	.	.	.
CAND2	23066	broad.mit.edu	36	3	12833669	12833669	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162499	exon10	c.G2238A	p.S746S	.	.	.
GATA2	2624	broad.mit.edu	36	3	129682808	129682808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032638	exon6	c.G1187A	p.R396Q	.	.	.
RHO	6010	broad.mit.edu	36	3	130733832	130733832	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000539	exon3	c.G579A	p.T193T	.	.	.
RHO	6010	broad.mit.edu	36	3	130735173	130735173	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000539	exon5	c.C969T	p.C323C	.	.	.
TMCC1	23023	broad.mit.edu	36	3	130856525	130856525	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017395	exon5	c.C1623A	p.S541S	.	.	.
COL6A5	256076	broad.mit.edu	36	3	131642210	131642210	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153264	exon35	c.T6338C	p.V2113A	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131768663	131768663	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon4	c.C1710T	p.I570I	.	.	.
NEK11	79858	broad.mit.edu	36	3	132353970	132353970	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024800	exon8	c.C696T	p.F232F	.	.	.
NUP210	23225	broad.mit.edu	36	3	13354370	13354370	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024923	exon26	c.C3519T	p.R1173R	.	.	.
NUP210	23225	broad.mit.edu	36	3	13413917	13413917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024923	exon3	c.C376T	p.R126C	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136450941	136450941	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004441	exon15	c.G2764A	p.A922T	.	.	.
CEP70	80321	broad.mit.edu	36	3	139738819	139738819	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024491	exon7	c.C526T	p.Q176X	.	.	.
XPC	7508	broad.mit.edu	36	3	14165421	14165421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145769	exon12	c.G2036A	p.R679Q	.	.	.
PAQR9	344838	broad.mit.edu	36	3	144164069	144164069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198504	exon1	c.G800A	p.R267H	.	.	.
SLC9A9	285195	broad.mit.edu	36	3	144668716	144668716	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173653	exon12	c.G1322A	p.R441Q	.	.	.
GRIP2	80852	broad.mit.edu	36	3	14526453	14526453	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080423	exon18	c.G2247A	p.P749P	.	.	.
ZIC4	84107	broad.mit.edu	36	3	148591543	148591543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168378	exon4	c.G1019A	p.R340H	.	.	.
MRPS25	64432	broad.mit.edu	36	3	15081698	15081698	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022497	exon1	c.T8C	p.M3T	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152638072	152638072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178145	exon2	c.G1048A	p.V350M	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155323195	155323195	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015595	exon2	c.G724A	p.A242T	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156688585	156688585	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130960	exon20	c.C2509T	p.R837W	.	.	.
RARRES1	5918	broad.mit.edu	36	3	159911392	159911392	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002888	exon3	c.C364T	p.R122C	.	.	.
GALNTL2	117248	broad.mit.edu	36	3	16225168	16225168	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054110	exon4	c.A1066G	p.I356V	.	.	.
PLCL2	23228	broad.mit.edu	36	3	17027005	17027005	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144382	exon3	c.A1144G	p.M382V	.	.	.
SLC2A2	6514	broad.mit.edu	36	3	172205830	172205830	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000340	exon7	c.C901T	p.R301X	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184393556	184393556	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015078	exon27	c.G2941A	p.G981R	.	.	.
YEATS2	55689	broad.mit.edu	36	3	184957077	184957077	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018023	exon12	c.G1458A	p.V486V	.	.	.
YEATS2	55689	broad.mit.edu	36	3	184962586	184962586	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018023	exon15	c.T1772C	p.I591T	.	.	.
ABCC5	10057	broad.mit.edu	36	3	185162002	185162002	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005688	exon16	c.G2370A	p.P790P	.	.	.
HTR3C	170572	broad.mit.edu	36	3	185253604	185253604	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130770	exon1	c.C42T	p.C14C	.	.	.
HTR3E	285242	broad.mit.edu	36	3	185306776	185306776	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182589	exon7	c.G1137A	p.A379A	.	.	.
AP2M1	1173	broad.mit.edu	36	3	185380666	185380666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025205	exon4	c.G356A	p.G119D	.	.	.
ECE2	9718	broad.mit.edu	36	3	185492659	185492659	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014693	exon19	c.G2591T	p.R864L	.	.	.
LPP	4026	broad.mit.edu	36	3	189725194	189725194	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167671	exon5	c.C354T	p.D118D	.	.	.
TP63	8626	broad.mit.edu	36	3	190939235	190939235	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114979	exon3	c.C302T	p.S101L	.	.	.
TMEM207	131920	broad.mit.edu	36	3	191641948	191641948	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207316	exon3	c.A131G	p.D44G	.	.	.
KIAA0226	9711	broad.mit.edu	36	3	198905045	198905045	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014687	exon11	c.G1724A	p.R575H	.	.	.
UBE2E2	7325	broad.mit.edu	36	3	23606287	23606287	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152653	exon6	c.C567T	p.D189D	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25643731	25643731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001068	exon16	c.G1952A	p.R651H	.	.	.
TGFBR2	7048	broad.mit.edu	36	3	30690682	30690682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003242	exon5	c.G1336A	p.D446N	.	.	.
STT3B	201595	broad.mit.edu	36	3	31596416	31596416	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178862	exon3	c.G535A	p.G179S	.	.	.
CNOT10	25904	broad.mit.edu	36	3	32790004	32790004	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015442	exon19	c.C2132G	p.A711G	.	.	.
TMPPE	643853	broad.mit.edu	36	3	33109761	33109761	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136238	exon2	c.C520T	p.R174W	.	.	.
DCLK3	85443	broad.mit.edu	36	3	36754293	36754293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033403	exon2	c.C862T	p.R288C	.	.	.
ITGA9	3680	broad.mit.edu	36	3	37820359	37820359	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002207	exon27	c.C2931T	p.Y977Y	.	.	.
VILL	50853	broad.mit.edu	36	3	38018994	38018994	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015873	exon13	c.C1583T	p.A528V	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38102742	38102742	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007337	exon9	c.C1442T	p.P481L	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38718439	38718439	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006514	exon26	c.G4552A	p.V1518I	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38756055	38756055	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006514	exon14	c.C2235T	p.G745G	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38863503	38863503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014139	exon26	c.G5062A	p.A1688T	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39202499	39202499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194293	exon2	c.G3442A	p.V1148M	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39204233	39204233	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194293	exon2	c.C1708T	p.R570X	.	.	.
ENTPD3	956	broad.mit.edu	36	3	40443998	40443998	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001248	exon11	c.G1585A	p.D529N	.	.	.
ZNF619	285267	broad.mit.edu	36	3	40503750	40503750	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145083	exon4	c.C613T	p.R205W	.	.	.
ZNF621	285268	broad.mit.edu	36	3	40549511	40549511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098414	exon5	c.C1246T	p.R416C	.	.	.
ULK4	54986	broad.mit.edu	36	3	41948485	41948485	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017886	exon5	c.T396C	p.P132P	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42204601	42204601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042646	exon5	c.G541A	p.A181T	.	.	.
SEC22C	9117	broad.mit.edu	36	3	42585413	42585413	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004206	exon2	c.C130T	p.L44L	.	.	.
KBTBD5	131377	broad.mit.edu	36	3	42707456	42707456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152393	exon5	c.C1709T	p.T570M	.	.	.
CCR9	10803	broad.mit.edu	36	3	45917970	45917970	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006641	exon2	c.T650C	p.V217A	.	.	.
ALS2CL	259173	broad.mit.edu	36	3	46692825	46692825	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190707	exon19	c.C2100T	p.Y700Y	.	.	.
ALS2CL	259173	broad.mit.edu	36	3	46702071	46702071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190707	exon7	c.C734T	p.P245L	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47017544	47017544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015175	exon28	c.C4355T	p.S1452L	.	.	.
KLHL18	23276	broad.mit.edu	36	3	47336209	47336209	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025010	exon2	c.T192C	p.H64H	.	.	.
PTPN23	25930	broad.mit.edu	36	3	47425488	47425488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015466	exon16	c.C1549T	p.R517C	.	.	.
SMARCC1	6599	broad.mit.edu	36	3	47702564	47702564	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003074	exon14	c.C1364T	p.A455V	.	.	.
NME6	10201	broad.mit.edu	36	3	48311672	48311672	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005793	exon5	c.G315A	p.T105T	.	.	.
PLXNB1	5364	broad.mit.edu	36	3	48440627	48440627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002673	exon3	c.G398A	p.R133Q	.	.	.
CELSR3	1951	broad.mit.edu	36	3	48672089	48672089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001407	exon1	c.C2983T	p.R995W	.	.	.
USP19	10869	broad.mit.edu	36	3	49123416	49123416	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199162	exon23	c.G3480A	p.R1160R	.	.	.
USP19	10869	broad.mit.edu	36	3	49127451	49127451	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199162	exon14	c.G2090A	p.R697H	.	.	.
USP4	7375	broad.mit.edu	36	3	49324079	49324079	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003363	exon7	c.G708A	p.A236A	.	.	.
RHOA	387	broad.mit.edu	36	3	49388013	49388013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001664	exon2	c.G14A	p.R5Q	.	.	.
TCTA	6988	broad.mit.edu	36	3	49427268	49427268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022171	exon3	c.C281T	p.A94V	.	.	.
AMT	275	broad.mit.edu	36	3	49430010	49430010	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000481	exon9	c.C1179A	p.P393P	.	.	.
DAG1	1605	broad.mit.edu	36	3	49543500	49543500	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004393	exon3	c.G552A	p.A184A	.	.	.
BSN	8927	broad.mit.edu	36	3	49665027	49665027	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003458	exon5	c.C3034T	p.R1012C	.	.	.
RNF123	63891	broad.mit.edu	36	3	49713950	49713950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022064	exon16	c.G1300A	p.V434I	.	.	.
TRAIP	10293	broad.mit.edu	36	3	49844408	49844408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005879	exon11	c.C982T	p.R328W	.	.	.
HYAL1	3373	broad.mit.edu	36	3	50313050	50313050	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153281	exon6	c.G1176A	p.T392T	.	.	.
RRP9	9136	broad.mit.edu	36	3	51945393	51945393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004704	exon8	c.C655T	p.R219C	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52358137	52358137	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015512	exon13	c.A2300G	p.K767R	.	.	.
SEMA3G	56920	broad.mit.edu	36	3	52449027	52449027	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020163	exon11	c.G1271A	p.R424H	.	.	.
SEMA3G	56920	broad.mit.edu	36	3	52449124	52449124	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020163	exon11	c.C1174T	p.R392W	.	.	.
SEMA3G	56920	broad.mit.edu	36	3	52450331	52450331	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020163	exon7	c.C802T	p.R268C	.	.	.
STAB1	23166	broad.mit.edu	36	3	52523496	52523496	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015136	exon34	c.C3622T	p.R1208C	.	.	.
PRKCD	5580	broad.mit.edu	36	3	53198148	53198148	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006254	exon17	c.A1589G	p.D530G	.	.	.
TKT	7086	broad.mit.edu	36	3	53251273	53251273	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135055	exon2	c.G133A	p.A45T	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53675513	53675513	+	De_novo_Start_OutOfFrame	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128839	exon7	c.G1027T	p.G343C	.	.	.
FLNB	2317	broad.mit.edu	36	3	58110937	58110937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164317	exon39	c.C6403T	p.R2135W	.	.	.
CADPS	8618	broad.mit.edu	36	3	62545933	62545933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183393	exon8	c.G1544A	p.R515Q	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65391533	65391533	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015520	exon11	c.G1427A	p.R476Q	.	.	.
SLC25A26	115286	broad.mit.edu	36	3	66503648	66503648	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173471	exon8	c.C450T	p.G150G	.	.	.
LRIG1	26018	broad.mit.edu	36	3	66517296	66517296	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015541	exon14	c.A1880G	p.N627S	.	.	.
KBTBD8	84541	broad.mit.edu	36	3	67136405	67136405	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032505	exon3	c.C324A	p.A108A	.	.	.
FAM19A1	407738	broad.mit.edu	36	3	68549141	68549141	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213609	exon3	c.T140G	p.I47R	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74501045	74501045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020872	exon7	c.C931T	p.R311C	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74556729	74556729	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020872	exon4	c.C411T	p.G137G	.	.	.
OXTR	5021	broad.mit.edu	36	3	8784219	8784219	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000916	exon3	c.T655G	p.C219G	.	.	.
TTLL3	26140	broad.mit.edu	36	3	9845828	9845828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025930	exon10	c.G1732A	p.A578T	.	.	.
EPHA6	285220	broad.mit.edu	36	3	98667989	98667989	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173655	exon5	c.A43G	p.N15D	.	.	.
WDR17	116966	broad.mit.edu	36	4	177308285	177308286	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170710	exon16	c.2217_2218insA	p.V739fs	.	.	.
ADH1C	126	broad.mit.edu	36	4	100483169	100483169	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000669	exon6	c.T634A	p.C212S	.	.	.
GSTCD	79807	broad.mit.edu	36	4	106859871	106859871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024751	exon3	c.C371T	p.P124L	.	.	.
SGMS2	166929	broad.mit.edu	36	4	109043868	109043868	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136257	exon4	c.C604T	p.R202W	.	.	.
CYP2U1	113612	broad.mit.edu	36	4	109086200	109086200	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183075	exon2	c.C1116T	p.P372P	.	.	.
ALPK1	80216	broad.mit.edu	36	4	113568232	113568232	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025144	exon9	c.G757A	p.D253N	.	.	.
ANK2	287	broad.mit.edu	36	4	114433107	114433107	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020977	exon21	c.C2364T	p.N788N	.	.	.
ARSJ	79642	broad.mit.edu	36	4	115043361	115043361	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024590	exon2	c.A1318G	p.I440V	.	.	.
IL2	3558	broad.mit.edu	36	4	123597027	123597027	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000586	exon1	c.C19A	p.L7M	.	.	.
FAT4	79633	broad.mit.edu	36	4	126549364	126549364	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon4	c.C5885T	p.T1962I	.	.	.
FAT4	79633	broad.mit.edu	36	4	126589396	126589396	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024582	exon9	c.C7775A	p.S2592Y	.	.	.
FAT4	79633	broad.mit.edu	36	4	126591820	126591820	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.A10199G	p.D3400G	.	.	.
SCLT1	132320	broad.mit.edu	36	4	130184063	130184063	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144643	exon4	c.T171C	p.A57A	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134294959	134294959	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032961	exon2	c.C2679T	p.R893R	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138662255	138662255	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon4	c.A2786T	p.D929V	.	.	.
NAA15	80155	broad.mit.edu	36	4	140502470	140502470	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057175	exon14	c.C1682A	p.A561D	.	.	.
MAML3	55534	broad.mit.edu	36	4	140860113	140860113	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018717	exon6	c.A3219G	p.P1073P	.	.	.
ZNF827	152485	broad.mit.edu	36	4	147043488	147043488	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178835	exon2	c.C373T	p.R125W	.	.	.
CC2D2A	57545	broad.mit.edu	36	4	15113601	15113601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080522	exon7	c.G395A	p.R132Q	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon8	c.G1154A	p.R385H	 FBXW7,large_intestine,NS,Substitution - Missense,0 	.	.
MND1	84057	broad.mit.edu	36	4	154537827	154537827	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032117	exon6	c.C358T	p.R120X	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155375975	155375975	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.C7914T	p.G2638G	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155400237	155400237	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon20	c.G5334T	p.Q1778H	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155470206	155470206	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142552	exon6	c.G3837A	p.A1279A	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156862691	156862691	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon9	c.A1768T	p.K590X	.	.	.
NPY5R	4889	broad.mit.edu	36	4	164492022	164492022	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006174	exon4	c.C1147T	p.P383S	.	.	.
KIAA1712	80817	broad.mit.edu	36	4	175462058	175462058	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040157	exon6	c.G470T	p.G157V	.	.	.
FGFR3	2261	broad.mit.edu	36	4	1777851	1777851	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163213	exon15	c.G2035A	p.V679I	.	.	.
AGA	175	broad.mit.edu	36	4	178592636	178592636	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000027	exon7	c.C700T	p.R234C	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183951052	183951052	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon25	c.C6233T	p.T2078M	.	.	.
FAT1	2195	broad.mit.edu	36	4	187761356	187761356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon19	c.G11318A	p.R3773H	.	.	.
FAT1	2195	broad.mit.edu	36	4	187867297	187867297	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon2	c.C679T	p.R227C	.	.	.
WHSC1	7468	broad.mit.edu	36	4	1932574	1932574	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133331	exon19	c.C3270T	p.N1090N	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20134611	20134611	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004787	exon13	c.G1261A	p.A421T	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20144298	20144298	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004787	exon18	c.T1694G	p.F565C	.	.	.
PPARGC1A	10891	broad.mit.edu	36	4	23442320	23442320	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013261	exon3	c.T387C	p.P129P	.	.	.
HTT	3064	broad.mit.edu	36	4	3210035	3210035	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon65	c.C8955T	p.D2985D	.	.	.
RGS12	6002	broad.mit.edu	36	4	3288384	3288384	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002926	exon2	c.T689C	p.M230T	.	.	.
COX7B2	170712	broad.mit.edu	36	4	46431762	46431762	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130902	exon3	c.C205A	p.P69T	.	.	.
TXK	7294	broad.mit.edu	36	4	47764424	47764424	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003328	exon15	c.C1571T	p.A524V	.	.	.
FRYL	285527	broad.mit.edu	36	4	48237300	48237300	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015030	exon46	c.G6122A	p.R2041Q	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54849982	54849982	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon21	c.T2824C	p.S942P	.	.	.
SRD5A3	79644	broad.mit.edu	36	4	55925004	55925004	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024592	exon3	c.A371G	p.E124G	.	.	.
CLOCK	9575	broad.mit.edu	36	4	56039820	56039820	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004898	exon6	c.T175C	p.S59P	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56875799	56875799	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020722	exon8	c.C1374T	p.A458A	.	.	.
AASDH	132949	broad.mit.edu	36	4	56914400	56914400	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181806	exon9	c.G1503A	p.L501L	.	.	.
CRMP1	1400	broad.mit.edu	36	4	5908807	5908807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001313	exon4	c.G442A	p.V148I	.	.	.
WFS1	7466	broad.mit.edu	36	4	6341650	6341650	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145853	exon4	c.G351A	p.T117T	.	.	.
WFS1	7466	broad.mit.edu	36	4	6344567	6344567	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145853	exon6	c.C654T	p.P218P	.	.	.
MAN2B2	23324	broad.mit.edu	36	4	6639724	6639724	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015274	exon4	c.G492A	p.A164A	.	.	.
GNRHR	2798	broad.mit.edu	36	4	68292905	68292905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000406	exon2	c.C718T	p.R240W	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68885488	68885488	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031732	exon4	c.G735A	p.E245E	.	.	.
UGT2A1	10941	broad.mit.edu	36	4	70547404	70547404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006798	exon1	c.G548A	p.C183Y	.	.	.
RUFY3	22902	broad.mit.edu	36	4	71807179	71807179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014961	exon1	c.G25A	p.D9N	.	.	.
SEPT11	55752	broad.mit.edu	36	4	78160714	78160714	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018243	exon7	c.C820T	p.R274X	.	.	.
CNOT6L	246175	broad.mit.edu	36	4	78871672	78871672	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144571	exon9	c.C917T	p.A306V	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79680945	79680945	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon74	c.G11682A	p.A3894A	.	.	.
BMP2K	55589	broad.mit.edu	36	4	80051613	80051613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198892	exon16	c.C2888T	p.T963M	.	.	.
ARHGAP24	83478	broad.mit.edu	36	4	86862108	86862108	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025616	exon3	c.A227T	p.N76I	.	.	.
PKD2	5311	broad.mit.edu	36	4	89205595	89205595	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000297	exon11	c.G2164A	p.V722M	.	.	.
PKD2	5311	broad.mit.edu	36	4	89208176	89208176	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000297	exon13	c.G2461A	p.G821R	.	.	.
GRID2	2895	broad.mit.edu	36	4	94909581	94909581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001510	exon15	c.C2558T	p.T853M	.	.	.
PJA2	9867	broad.mit.edu	36	5	108719515	108719515	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014819	exon7	c.G1764T	p.E588D	.	.	.
MAN2A1	4124	broad.mit.edu	36	5	109134045	109134045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002372	exon7	c.G1100A	p.C367Y	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11135866	11135866	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon16	c.C2730T	p.C910C	.	.	.
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
MCC	4163	broad.mit.edu	36	5	112412819	112412819	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085377	exon16	c.C2525T	p.T842M	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112888677	112888677	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon3	c.G379A	p.V127I	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115378045	115378045	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173800	exon16	c.C2372T	p.A791V	.	.	.
PRR16	51334	broad.mit.edu	36	5	120050237	120050237	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016644	exon3	c.G780A	p.V260V	.	.	.
MEGF10	84466	broad.mit.edu	36	5	126798996	126798996	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032446	exon17	c.A2020G	p.T674A	.	.	.
ACSL6	23305	broad.mit.edu	36	5	131338405	131338405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015256	exon11	c.C1013T	p.A338V	.	.	.
TERT	7015	broad.mit.edu	36	5	1331780	1331780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198253	exon6	c.C2262T	p.H754H	.	.	.
CDKL3	51265	broad.mit.edu	36	5	133670267	133670267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113575	exon10	c.C1390T	p.R464C	.	.	.
HSPA9	3313	broad.mit.edu	36	5	137930618	137930618	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004134	exon8	c.C850T	p.R284W	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138294482	138294482	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001903	exon16	c.G2257T	p.G753X	.	.	.
CXXC5	51523	broad.mit.edu	36	5	139040526	139040526	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016463	exon2	c.G234A	p.P78P	.	.	.
NRG2	9542	broad.mit.edu	36	5	139247244	139247244	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013981	exon2	c.C737T	p.T246M	.	.	.
SLC35A4	113829	broad.mit.edu	36	5	139927133	139927133	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080670	exon3	c.C195T	p.C65C	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140202850	140202850	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031856	exon1	c.C1760T	p.A587V	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140533761	140533761	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018940	exon1	c.C1161T	p.D387D	.	.	.
PCDHB16	57717	broad.mit.edu	36	5	140542835	140542835	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020957	exon1	c.A517G	p.S173G	.	.	.
PCDHB9	56127	broad.mit.edu	36	5	140548491	140548491	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019119	exon1	c.T1415C	p.V472A	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700688	140700688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032009	exon1	c.G1966A	p.A656T	.	.	.
FCHSD1	89848	broad.mit.edu	36	5	141001311	141001311	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033449	exon20	c.C2011T	p.R671C	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141021469	141021469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022481	exon21	c.C3085T	p.R1029C	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147021046	147021046	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon3	c.G285A	p.Q95Q	.	.	.
SH3TC2	79628	broad.mit.edu	36	5	148364539	148364539	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024577	exon17	c.G3795A	p.L1265L	.	.	.
FAT2	2196	broad.mit.edu	36	5	150903172	150903172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon9	c.C7709T	p.T2570M	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151752030	151752030	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020167	exon4	c.T1163C	p.M388T	.	.	.
ITK	3702	broad.mit.edu	36	5	156603303	156603303	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005546	exon12	c.A1153G	p.K385E	.	.	.
FAM134B	54463	broad.mit.edu	36	5	16625168	16625168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034850	exon2	c.G364A	p.V122I	.	.	.
SH3PXD2B	285590	broad.mit.edu	36	5	171705804	171705804	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017995	exon12	c.G1129A	p.A377T	.	.	.
HK3	3101	broad.mit.edu	36	5	176248084	176248084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002115	exon10	c.G1159A	p.V387I	.	.	.
SLC34A1	6569	broad.mit.edu	36	5	176746152	176746152	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167579	exon5	c.G511A	p.V171I	.	.	.
B4GALT7	11285	broad.mit.edu	36	5	176968190	176968190	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007255	exon4	c.C684T	p.D228D	.	.	.
BTNL8	79908	broad.mit.edu	36	5	180270976	180270976	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159707	exon2	c.G81A	p.T27T	.	.	.
TRIM41	90933	broad.mit.edu	36	5	180594089	180594089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033549	exon6	c.G1601A	p.R534H	.	.	.
CDH12	1010	broad.mit.edu	36	5	21838086	21838086	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004061	exon10	c.C1203A	p.T401T	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562326	23562326	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon11	c.G1372T	p.E458X	.	.	.
CDH10	1008	broad.mit.edu	36	5	24534363	24534363	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon9	c.C1416T	p.R472R	.	.	.
SDHA	6389	broad.mit.edu	36	5	277547	277547	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004168	exon3	c.C223T	p.R75X	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31546969	31546969	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon8	c.C1362T	p.S454S	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31562574	31562574	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon4	c.C223T	p.R75X	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32109841	32109841	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon17	c.C2872T	p.R958C	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32126515	32126515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon19	c.G7204A	p.E2402K	.	.	.
NPR3	4883	broad.mit.edu	36	5	32774758	32774758	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000908	exon3	c.C924T	p.H308H	.	.	.
SLC1A3	6507	broad.mit.edu	36	5	36716303	36716303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166695	exon7	c.G1144A	p.V382M	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37036715	37036715	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015384	exon13	c.G3542T	p.R1181M	.	.	.
RICTOR	253260	broad.mit.edu	36	5	39011450	39011450	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152756	exon10	c.G835T	p.A279S	.	.	.
SLC9A3	6550	broad.mit.edu	36	5	529160	529160	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004174	exon14	c.G2115A	p.A705A	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5513617	5513617	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015325	exon13	c.G1170T	p.E390D	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56206634	56206634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005921	exon10	c.G1705A	p.V569I	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56216408	56216408	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005921	exon16	c.C3980T	p.A1327V	.	.	.
KIF2A	3796	broad.mit.edu	36	5	61681657	61681657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098511	exon4	c.G287A	p.R96Q	.	.	.
PAPD7	11044	broad.mit.edu	36	5	6799494	6799494	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171805	exon7	c.C663T	p.S221S	.	.	.
FOXD1	2297	broad.mit.edu	36	5	72779809	72779809	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004472	exon1	c.G135A	p.R45R	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77366003	77366003	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003664	exon24	c.C2832T	p.S944S	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77513087	77513087	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003664	exon8	c.G942A	p.A314A	.	.	.
SCAMP1	9522	broad.mit.edu	36	5	77748155	77748155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004866	exon4	c.G269A	p.R90H	.	.	.
HOMER1	9456	broad.mit.edu	36	5	78788527	78788527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004272	exon2	c.C76T	p.P26S	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79066362	79066362	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.G6018T	p.E2006D	.	.	.
THBS4	7060	broad.mit.edu	36	5	79408502	79408502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003248	exon16	c.C1961T	p.T654I	.	.	.
FAM151B	167555	broad.mit.edu	36	5	79851326	79851326	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205548	exon4	c.C376T	p.R126C	.	.	.
VCAN	1462	broad.mit.edu	36	5	82869120	82869120	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164097	exon7	c.A1581G	p.T527T	.	.	.
GPR98	84059	broad.mit.edu	36	5	90011199	90011199	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon26	c.C5521T	p.R1841C	.	.	.
GPR98	84059	broad.mit.edu	36	5	90095025	90095025	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon59	c.A12268G	p.T4090A	.	.	.
SYNPO	11346	broad.mit.edu	36	5	150009263	150009263	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166208	exon3	c.1965delG	p.Q655fs	.	.	.
PREP	5550	broad.mit.edu	36	6	105836379	105836379	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002726	exon14	c.C1773T	p.I591I	.	.	.
BEND3	57673	broad.mit.edu	36	6	107497944	107497944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080450	exon5	c.C1144T	p.R382W	.	.	.
MAK	4117	broad.mit.edu	36	6	10910128	10910128	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005906	exon7	c.C814T	p.R272X	 MAK,breast,NS,Substitution - Missense,+1 	.	.
C6orf186	728464	broad.mit.edu	36	6	110750761	110750761	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001123364	exon2	c.G326A	p.R109Q	.	.	.
CDK19	23097	broad.mit.edu	36	6	111095452	111095452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015076	exon4	c.C334T	p.R112C	.	.	.
TRAF3IP2	10758	broad.mit.edu	36	6	112019733	112019733	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147686	exon2	c.C250T	p.R84C	.	.	.
C6orf204	387119	broad.mit.edu	36	6	118993954	118993954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206921	exon3	c.C451T	p.R151W	.	.	.
MAN1A1	4121	broad.mit.edu	36	6	119552697	119552697	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005907	exon10	c.C1377T	p.I459I	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128602938	128602938	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002844	exon5	c.C628T	p.Q210X	.	.	.
TAAR9	134860	broad.mit.edu	36	6	132901229	132901229	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175057	exon1	c.C108T	p.Y36Y	.	.	.
MYB	4602	broad.mit.edu	36	6	135558606	135558606	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161660	exon8	c.G871A	p.G291R	.	.	.
PHACTR2	9749	broad.mit.edu	36	6	144123417	144123417	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100164	exon5	c.A641C	p.Q214P	.	.	.
UTRN	7402	broad.mit.edu	36	6	145202073	145202073	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon71	c.G10137A	p.S3379S	.	.	.
SASH1	23328	broad.mit.edu	36	6	148850475	148850475	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015278	exon8	c.G660A	p.S220S	.	.	.
C6orf211	79624	broad.mit.edu	36	6	151821332	151821332	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024573	exon3	c.G324A	p.W108X	.	.	.
TULP4	56995	broad.mit.edu	36	6	158655110	158655110	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007466	exon1	c.G74A	p.R25H	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160437478	160437478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon45	c.G6673A	p.V2225M	.	.	.
SLC22A1	6580	broad.mit.edu	36	6	160471184	160471184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003057	exon2	c.C470T	p.A157V	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161390118	161390118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006724	exon3	c.G824A	p.R275Q	.	.	.
RNASET2	8635	broad.mit.edu	36	6	167272439	167272439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003730	exon6	c.C380T	p.A127V	.	.	.
SMOC2	64094	broad.mit.edu	36	6	168741584	168741584	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166412	exon8	c.C799T	p.R267C	.	.	.
SMOC2	64094	broad.mit.edu	36	6	168795679	168795679	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166412	exon11	c.G1131A	p.R377R	.	.	.
TRIM38	10475	broad.mit.edu	36	6	26074881	26074881	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006355	exon3	c.A152C	p.Q51P	.	.	.
TRIM38	10475	broad.mit.edu	36	6	26091817	26091817	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006355	exon8	c.T1321C	p.S441P	.	.	.
HIST1H1A	3024	broad.mit.edu	36	6	26125576	26125576	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005325	exon1	c.G364T	p.G122C	.	.	.
HIST1H2BD	3017	broad.mit.edu	36	6	26266494	26266494	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021063	exon1	c.G118A	p.V40M	.	.	.
HIST1H3G	8355	broad.mit.edu	36	6	26379277	26379277	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003534	exon1	c.T315C	p.F105F	.	.	.
BTN3A2	11118	broad.mit.edu	36	6	26482554	26482554	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197249	exon8	c.G859A	p.D287N	.	.	.
PGBD1	84547	broad.mit.edu	36	6	28376852	28376852	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184743	exon7	c.C1242T	p.S414S	.	.	.
DUSP22	56940	broad.mit.edu	36	6	293125	293125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020185	exon6	c.G286A	p.V96M	.	.	.
TUBB2B	347733	broad.mit.edu	36	6	3170819	3170819	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178012	exon4	c.G503A	p.S168N	.	.	.
C2	717	broad.mit.edu	36	6	32003910	32003910	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000063	exon2	c.G246A	p.A82A	.	.	.
DAXX	1616	broad.mit.edu	36	6	33394537	33394537	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141970	exon8	c.C2220T	p.C740C	.	.	.
ZNF76	7629	broad.mit.edu	36	6	35366035	35366035	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003427	exon6	c.C447T	p.S149S	.	.	.
ZNF76	7629	broad.mit.edu	36	6	35368358	35368358	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003427	exon10	c.C981T	p.T327T	.	.	.
TEAD3	7005	broad.mit.edu	36	6	35552098	35552098	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003214	exon9	c.G685T	p.E229X	.	.	.
LHFPL5	222662	broad.mit.edu	36	6	35881630	35881630	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182548	exon1	c.G205A	p.V69M	.	.	.
SLC26A8	116369	broad.mit.edu	36	6	36030994	36030994	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052961	exon17	c.G2145A	p.A715A	.	.	.
TBC1D22B	55633	broad.mit.edu	36	6	37392902	37392902	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017772	exon12	c.T1331C	p.V444A	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38993691	38993691	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon68	c.A9670T	p.T3224S	.	.	.
DAAM2	23500	broad.mit.edu	36	6	39974690	39974690	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015345	exon22	c.T2678C	p.V893A	.	.	.
FRS3	10817	broad.mit.edu	36	6	41846494	41846494	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006653	exon7	c.A1320C	p.Q440H	.	.	.
CUL7	9820	broad.mit.edu	36	6	43126037	43126037	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014780	exon5	c.T1311C	p.I437I	.	.	.
SRF	6722	broad.mit.edu	36	6	43251677	43251677	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003131	exon3	c.A1036G	p.M346V	.	.	.
YIPF3	25844	broad.mit.edu	36	6	43591703	43591703	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015388	exon2	c.G190A	p.A64T	.	.	.
XPO5	57510	broad.mit.edu	36	6	43609719	43609719	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020750	exon21	c.C2346T	p.T782T	.	.	.
CDYL	9425	broad.mit.edu	36	6	4880880	4880880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143970	exon3	c.G428A	p.R143H	.	.	.
EXOC2	55770	broad.mit.edu	36	6	494246	494246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018303	exon22	c.C2167T	p.R723C	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50899427	50899427	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003221	exon2	c.G430C	p.V144L	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51983094	51983094	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon35	c.T5723C	p.I1908T	.	.	.
PAQR8	85315	broad.mit.edu	36	6	52376137	52376137	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133367	exon2	c.G167A	p.R56H	.	.	.
ICK	22858	broad.mit.edu	36	6	53013949	53013949	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016513	exon3	c.C45T	p.Y15Y	.	.	.
HMGCLL1	54511	broad.mit.edu	36	6	55412231	55412231	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019036	exon9	c.A971G	p.E324G	.	.	.
DST	667	broad.mit.edu	36	6	56588720	56588720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon24	c.G7504A	p.E2502K	.	.	.
LMBRD1	55788	broad.mit.edu	36	6	70480373	70480373	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018368	exon9	c.G800A	p.R267H	.	.	.
RIMS1	22999	broad.mit.edu	36	6	72863551	72863551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014989	exon3	c.C424T	p.R142C	.	.	.
HTR1B	3351	broad.mit.edu	36	6	78229460	78229460	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000863	exon1	c.C380T	p.S127L	.	.	.
IBTK	25998	broad.mit.edu	36	6	82937936	82937936	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015525	exon29	c.T3987C	p.P1329P	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83926269	83926269	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015018	exon37	c.C6833T	p.T2278M	.	.	.
MDN1	23195	broad.mit.edu	36	6	90428530	90428530	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon87	c.T14562C	p.D4854D	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90630252	90630252	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon7	c.A2103G	p.Q701Q	.	.	.
GJA10	84694	broad.mit.edu	36	6	90661371	90661371	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032602	exon1	c.C463T	p.R155C	.	.	.
GPR63	81491	broad.mit.edu	36	6	97353688	97353688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143957	exon3	c.C641T	p.A214V	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151714693	151714693	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.3474delC	p.I1158fs	.	.	.
ZAN	7455	broad.mit.edu	36	7	100196042	100196042	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173059	exon19	c.C3789T	p.F1263F	.	.	.
NAPEPLD	222236	broad.mit.edu	36	7	102556211	102556211	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198990	exon2	c.G249A	p.W83X	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110551500	110551500	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018334	exon2	c.G1436C	p.G479A	.	.	.
FEZF1	389549	broad.mit.edu	36	7	121731537	121731537	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024613	exon1	c.C191A	p.S64Y	.	.	.
ZNF800	168850	broad.mit.edu	36	7	126801295	126801295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176814	exon5	c.C1331T	p.P444L	.	.	.
TNPO3	23534	broad.mit.edu	36	7	128409595	128409595	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012470	exon14	c.G1802A	p.S601N	.	.	.
SMO	6608	broad.mit.edu	36	7	128639324	128639324	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005631	exon12	c.A2160C	p.G720G	.	.	.
FAM40B	57464	broad.mit.edu	36	7	128909955	128909955	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020704	exon20	c.C2086T	p.R696W	.	.	.
KLF14	136259	broad.mit.edu	36	7	130068657	130068657	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138693	exon1	c.G744A	p.T248T	.	.	.
LRGUK	136332	broad.mit.edu	36	7	133462776	133462776	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144648	exon1	c.A116G	p.Q39R	.	.	.
SLC13A4	26266	broad.mit.edu	36	7	135016882	135016882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012450	exon16	c.C1850T	p.A617V	.	.	.
PTN	5764	broad.mit.edu	36	7	136588840	136588840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002825	exon3	c.G200A	p.R67Q	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138203276	138203276	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon15	c.C4914A	p.A1638A	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138252993	138252993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon2	c.C1919T	p.S640L	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138253798	138253798	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon2	c.G1114A	p.A372T	.	.	.
TAS2R4	50832	broad.mit.edu	36	7	141125242	141125242	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016944	exon1	c.C485T	p.T162M	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142337585	142337585	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019841	exon2	c.C207T	p.T69T	.	.	.
EPHA1	2041	broad.mit.edu	36	7	142807124	142807124	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005232	exon4	c.G577A	p.A193T	.	.	.
ARHGEF35	445328	broad.mit.edu	36	7	143516401	143516401	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003702	exon2	c.T9C	p.A3A	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146371969	146371969	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon4	c.G440A	p.R147Q	.	.	.
EZH2	2146	broad.mit.edu	36	7	148145921	148145921	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152998	exon9	c.T1089C	p.D363D	.	.	.
ZNF786	136051	broad.mit.edu	36	7	148400117	148400117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152411	exon4	c.C680T	p.T227M	.	.	.
ZNF425	155054	broad.mit.edu	36	7	148432522	148432522	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001661	exon4	c.C1374T	p.R458R	.	.	.
ZNF746	155061	broad.mit.edu	36	7	148822082	148822082	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163474	exon3	c.C337T	p.L113L	.	.	.
KRBA1	84626	broad.mit.edu	36	7	149058571	149058571	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032534	exon15	c.A2125G	p.T709A	.	.	.
SSPO	23145	broad.mit.edu	36	7	149106902	149106902	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198455	exon7	c.A935G	p.D312G	.	.	.
GIMAP8	155038	broad.mit.edu	36	7	149794747	149794747	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175571	exon2	c.G28A	p.E10K	.	.	.
AGAP3	116988	broad.mit.edu	36	7	150462498	150462498	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031946	exon11	c.C1405T	p.R469X	.	.	.
NUB1	51667	broad.mit.edu	36	7	150695938	150695938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016118	exon10	c.G1046A	p.R349Q	.	.	.
NUB1	51667	broad.mit.edu	36	7	150705108	150705108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016118	exon15	c.C1670T	p.A557V	.	.	.
LMBR1	64327	broad.mit.edu	36	7	156322311	156322311	+	De_novo_Start_InFrame	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022458	exon2	c.C96T	p.Y32Y	.	.	.
NCAPG2	54892	broad.mit.edu	36	7	158150011	158150011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017760	exon14	c.G1672A	p.A558T	.	.	.
NCAPG2	54892	broad.mit.edu	36	7	158150166	158150166	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017760	exon14	c.G1517A	p.R506H	.	.	.
ESYT2	57488	broad.mit.edu	36	7	158224477	158224477	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020728	exon18	c.C2346T	p.C782C	.	.	.
ANKMY2	57037	broad.mit.edu	36	7	16633262	16633262	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020319	exon3	c.C199T	p.R67X	.	.	.
PRPS1L1	221823	broad.mit.edu	36	7	18033739	18033739	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175886	exon1	c.C192T	p.N64N	.	.	.
FERD3L	222894	broad.mit.edu	36	7	19151310	19151310	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152898	exon1	c.C201T	p.C67C	.	.	.
NUDT1	4521	broad.mit.edu	36	7	2256995	2256995	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198949	exon5	c.C373T	p.R125C	.	.	.
DFNA5	1687	broad.mit.edu	36	7	24723438	24723438	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127453	exon5	c.C657T	p.Y219Y	.	.	.
NFE2L3	9603	broad.mit.edu	36	7	26191844	26191844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004289	exon4	c.C2001T	p.T667T	.	.	.
AMZ1	155185	broad.mit.edu	36	7	2706687	2706687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133463	exon2	c.G76A	p.A26T	.	.	.
CRHR2	1395	broad.mit.edu	36	7	30661792	30661792	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001883	exon10	c.G982A	p.V328I	.	.	.
STARD3NL	83930	broad.mit.edu	36	7	38220553	38220553	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032016	exon3	c.A296G	p.D99G	.	.	.
SDK1	221935	broad.mit.edu	36	7	4119554	4119554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon24	c.C3542T	p.T1181M	.	.	.
SDK1	221935	broad.mit.edu	36	7	4151942	4151942	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon29	c.G4291A	p.G1431S	.	.	.
INHBA	3624	broad.mit.edu	36	7	41695870	41695870	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002192	exon3	c.A1184G	p.K395R	.	.	.
MRPL32	64983	broad.mit.edu	36	7	42941201	42941201	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031903	exon2	c.C253T	p.R85C	.	.	.
DBNL	28988	broad.mit.edu	36	7	44067022	44067022	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014063	exon13	c.C1278T	p.Y426Y	.	.	.
DDX56	54606	broad.mit.edu	36	7	44578551	44578551	+	Missense_Mutation	SNP	G	A	A	rs62459150	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019082	exon5	c.C565T	p.R189W	.	.	.
OGDH	4967	broad.mit.edu	36	7	44702569	44702569	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002541	exon14	c.C1788T	p.D596D	.	.	.
ZMIZ2	83637	broad.mit.edu	36	7	44771546	44771546	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174929	exon14	c.G2007A	p.P669P	.	.	.
MMD2	221938	broad.mit.edu	36	7	4916153	4916153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100600	exon6	c.G494A	p.R165H	.	.	.
PDGFA	5154	broad.mit.edu	36	7	507327	507327	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002607	exon5	c.G532A	p.A178T	.	.	.
COBL	23242	broad.mit.edu	36	7	51171454	51171454	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015198	exon6	c.G852A	p.S284S	.	.	.
TNRC18	84629	broad.mit.edu	36	7	5368897	5368897	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080495	exon12	c.G4305A	p.G1435G	.	.	.
EGFR	1956	broad.mit.edu	36	7	55191067	55191067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201282	exon8	c.G940A	p.D314N	.	.	.
VOPP1	81552	broad.mit.edu	36	7	55508213	55508213	+	Missense_Mutation	SNP	C	T	T	rs11238366	byCluster;by2Hit2Allele	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030796	exon5	c.G348A	p.P116P	.	.	.
SUMF2	25870	broad.mit.edu	36	7	56109902	56109902	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042469	exon4	c.G526A	p.A176T	.	.	.
PMS2	5395	broad.mit.edu	36	7	5984762	5984762	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000535	exon13	c.G2266A	p.D756N	.	.	.
PMS2	5395	broad.mit.edu	36	7	6005339	6005339	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000535	exon6	c.C631T	p.R211X	.	.	.
ZNF92	168374	broad.mit.edu	36	7	64501218	64501218	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152626	exon4	c.T756C	p.T252T	.	.	.
MIOS	54468	broad.mit.edu	36	7	7601224	7601224	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019005	exon10	c.A2132G	p.H711R	.	.	.
SEMA3C	10512	broad.mit.edu	36	7	80256564	80256564	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006379	exon12	c.G1348A	p.G450R	.	.	.
PCLO	27445	broad.mit.edu	36	7	82289829	82289829	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon20	c.C14709T	p.S4903S	.	.	.
PCLO	27445	broad.mit.edu	36	7	82308755	82308755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon14	c.G14053A	p.D4685N	.	.	.
PCLO	27445	broad.mit.edu	36	7	82418384	82418384	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon6	c.G9456A	p.T3152T	.	.	.
DMTF1	9988	broad.mit.edu	36	7	86649525	86649525	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142327	exon10	c.G756A	p.A252A	.	.	.
RUNDC3B	154661	broad.mit.edu	36	7	87208762	87208762	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134405	exon6	c.A560C	p.K187T	.	.	.
STEAP1	26872	broad.mit.edu	36	7	89628359	89628359	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012449	exon3	c.A389G	p.Y130C	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89712702	89712702	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160138	exon1	c.G28A	p.A10T	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91774872	91774872	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019004	exon3	c.A452G	p.Y151C	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92569684	92569684	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193307	exon2	c.T3663C	p.N1221N	.	.	.
TFPI2	7980	broad.mit.edu	36	7	93357440	93357440	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006528	exon2	c.C216T	p.N72N	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94378081	94378081	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166163	exon1	c.T720G	p.S240S	.	.	.
TECPR1	25851	broad.mit.edu	36	7	97689663	97689663	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015395	exon22	c.G3035A	p.R1012Q	.	.	.
BAIAP2L1	55971	broad.mit.edu	36	7	97822311	97822311	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018842	exon3	c.T193C	p.S65P	.	.	.
NPTX2	4885	broad.mit.edu	36	7	98095655	98095655	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002523	exon5	c.C1074T	p.T358T	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98383878	98383878	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon32	c.G4572A	p.T1524T	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98429186	98429186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon64	c.C9808T	p.R3270C	 TRRAP,large_intestine,NS,Substitution - Missense,-1 	.	.
ARPC1B	10095	broad.mit.edu	36	7	98823731	98823731	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005720	exon4	c.C303T	p.C101C	.	.	.
COPS6	10980	broad.mit.edu	36	7	99526647	99526647	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006833	exon7	c.G585A	p.A195A	.	.	.
GAL3ST4	79690	broad.mit.edu	36	7	99595630	99595630	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024637	exon4	c.C1318T	p.R440W	.	.	.
GAL3ST4	79690	broad.mit.edu	36	7	99596042	99596042	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024637	exon4	c.G906A	p.M302I	.	.	.
MIR182	406958	broad.mit.edu	36	7	129197464	129197464	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF767	79970	broad.mit.edu	36	7	148947964	148947964	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LOC389458	389458	broad.mit.edu	36	7	5079254	5079254	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100523869	100523869	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon23	c.T3275C	p.V1092A	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100899007	100899007	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon45	c.G8161A	p.V2721I	.	.	.
RGS22	26166	broad.mit.edu	36	8	101121384	101121384	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015668	exon13	c.C2046T	p.C682C	.	.	.
ABRA	137735	broad.mit.edu	36	8	107851352	107851352	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139166	exon1	c.G243A	p.S81S	.	.	.
KCNV1	27012	broad.mit.edu	36	8	111053792	111053792	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014379	exon2	c.A862G	p.I288V	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116495492	116495492	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon7	c.C3820T	p.H1274Y	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116668886	116668886	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon5	c.C2217T	p.G739G	.	.	.
EIF3H	8667	broad.mit.edu	36	8	117837211	117837211	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003756	exon1	c.T7C	p.S3P	.	.	.
EXT1	2131	broad.mit.edu	36	8	118881211	118881211	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000127	exon11	c.A2162G	p.Q721R	.	.	.
DLC1	10395	broad.mit.edu	36	8	13295434	13295434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon4	c.C1313T	p.T438M	.	.	.
TG	7038	broad.mit.edu	36	8	134022938	134022938	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon26	c.C5202T	p.C1734C	.	.	.
ZFAT	57623	broad.mit.edu	36	8	135682006	135682006	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174157	exon6	c.A2144G	p.Y715C	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139233993	139233993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015912	exon13	c.C1907T	p.T636I	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139276688	139276688	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015912	exon9	c.C868A	p.L290I	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139902579	139902579	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon7	c.C1227T	p.Y409Y	.	.	.
KCNK9	51305	broad.mit.edu	36	8	140700244	140700244	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016601	exon2	c.C564T	p.H188H	.	.	.
SLC45A4	57210	broad.mit.edu	36	8	142298182	142298182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080431	exon4	c.G586A	p.A196T	.	.	.
PSCA	8000	broad.mit.edu	36	8	143760398	143760398	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005672	exon3	c.A191G	p.D64G	.	.	.
VPS28	51160	broad.mit.edu	36	8	145620998	145620998	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183057	exon7	c.C313T	p.L105L	.	.	.
ZNF517	340385	broad.mit.edu	36	8	146003688	146003688	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213605	exon5	c.C583T	p.H195Y	.	.	.
EFHA2	286097	broad.mit.edu	36	8	17006303	17006303	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181723	exon10	c.T1017C	p.D339D	.	.	.
BMP1	649	broad.mit.edu	36	8	22123078	22123078	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006129	exon19	c.C2751T	p.C917C	.	.	.
BMP1	649	broad.mit.edu	36	8	22125139	22125139	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006129	exon20	c.C2914T	p.R972X	.	.	.
NKX3-1	4824	broad.mit.edu	36	8	23595014	23595014	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006167	exon2	c.C370T	p.Q124X	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24400714	24400714	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon11	c.A1085T	p.D362V	.	.	.
BNIP3L	665	broad.mit.edu	36	8	26308665	26308665	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004331	exon3	c.C287A	p.P96H	.	.	.
DPYSL2	1808	broad.mit.edu	36	8	26540713	26540713	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001386	exon6	c.C606T	p.G202G	.	.	.
ADRA1A	148	broad.mit.edu	36	8	26778076	26778076	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033302	exon1	c.T328C	p.C110R	.	.	.
EPHX2	2053	broad.mit.edu	36	8	27454018	27454018	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001979	exon15	c.C1307A	p.P436H	.	.	.
CLU	1191	broad.mit.edu	36	8	27513243	27513243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171138	exon7	c.G1168A	p.E390K	.	.	.
SCARA3	51435	broad.mit.edu	36	8	27584556	27584556	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016240	exon6	c.T1590C	p.T530T	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2796068	2796068	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon66	c.C10177T	p.L3393F	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28664102	28664102	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001440	exon7	c.C2560T	p.R854W	.	.	.
WRN	7486	broad.mit.edu	36	8	31097448	31097448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000553	exon21	c.G2596A	p.V866I	.	.	.
NRG1	3084	broad.mit.edu	36	8	32731480	32731480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013957	exon8	c.G740A	p.C247Y	.	.	.
BRF2	55290	broad.mit.edu	36	8	37823561	37823561	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018310	exon3	c.T505G	p.L169V	.	.	.
GOT1L1	137362	broad.mit.edu	36	8	37913714	37913714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152413	exon5	c.G538A	p.V180I	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39765384	39765384	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001464	exon8	c.C603T	p.V201V	.	.	.
ZMAT4	79698	broad.mit.edu	36	8	40651578	40651578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024645	exon5	c.C379T	p.R127W	.	.	.
AGPAT6	137964	broad.mit.edu	36	8	41595643	41595643	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178819	exon12	c.G1252T	p.D418Y	.	.	.
NSMAF	8439	broad.mit.edu	36	8	59698495	59698495	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003580	exon8	c.G499A	p.A167T	.	.	.
PREX2	80243	broad.mit.edu	36	8	69096840	69096840	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025170	exon4	c.A352T	p.I118F	.	.	.
C8orf34	116328	broad.mit.edu	36	8	69514301	69514301	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052958	exon2	c.A341C	p.K114T	.	.	.
SLCO5A1	81796	broad.mit.edu	36	8	70906832	70906832	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030958	exon2	c.C631A	p.L211I	.	.	.
MSC	9242	broad.mit.edu	36	8	72917508	72917508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005098	exon2	c.C563T	p.P188L	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73112841	73112841	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon20	c.T2316A	p.T772T	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73150131	73150131	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007332	exon1	c.A68G	p.E23G	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74011132	74011132	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004770	exon3	c.C988T	p.R330W	.	.	.
SGK223	157285	broad.mit.edu	36	8	8222656	8222656	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080826	exon4	c.G3046A	p.G1016S	.	.	.
SGK223	157285	broad.mit.edu	36	8	8222935	8222935	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080826	exon4	c.G2767A	p.V923M	.	.	.
SLC7A13	157724	broad.mit.edu	36	8	87295838	87295838	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138817	exon4	c.A1333T	p.R445X	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954498	88954498	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152418	exon1	c.T818C	p.V273A	.	.	.
PPP1R3B	79660	broad.mit.edu	36	8	9036175	9036175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024607	exon2	c.G397A	p.V133I	.	.	.
TMEM55A	55529	broad.mit.edu	36	8	92090172	92090172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018710	exon5	c.G514A	p.A172T	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95608511	95608511	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015496	exon8	c.C1137T	p.I379I	.	.	.
POP1	10940	broad.mit.edu	36	8	99211616	99211616	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145860	exon5	c.C721T	p.R241W	.	.	.
STK3	6788	broad.mit.edu	36	8	99848723	99848723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006281	exon3	c.G160A	p.A54T	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100825504	100825504	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001855	exon14	c.C1806T	p.D602D	.	.	.
INVS	27130	broad.mit.edu	36	9	102028259	102028259	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183245	exon4	c.G368A	p.R123Q	.	.	.
TMEFF1	8577	broad.mit.edu	36	9	102244194	102244194	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080655	exon2	c.G153A	p.A51A	.	.	.
ABCA1	19	broad.mit.edu	36	9	106601941	106601941	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon36	c.G4923A	p.Q1641Q	.	.	.
ABCA1	19	broad.mit.edu	36	9	106685185	106685185	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon5	c.G377A	p.R126H	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108727229	108727229	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021224	exon3	c.T1215C	p.D405D	.	.	.
CTNNAL1	8727	broad.mit.edu	36	9	110801244	110801244	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003798	exon2	c.A255G	p.V85V	.	.	.
EPB41L4B	54566	broad.mit.edu	36	9	111057625	111057625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018424	exon11	c.C1156T	p.R386C	.	.	.
C9orf152	401546	broad.mit.edu	36	9	112003413	112003413	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012993	exon2	c.C356T	p.T119M	.	.	.
SLC46A2	57864	broad.mit.edu	36	9	114688659	114688659	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033051	exon3	c.C1272A	p.T424T	.	.	.
TNC	3371	broad.mit.edu	36	9	116828692	116828692	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon26	c.C6273T	p.S2091S	.	.	.
TNC	3371	broad.mit.edu	36	9	116878671	116878671	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon8	c.C2679T	p.L893L	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118244577	118244577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198186	exon6	c.C877T	p.L293L	.	.	.
TRIM32	22954	broad.mit.edu	36	9	118500966	118500966	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099679	exon2	c.T1124G	p.V375G	.	.	.
LHX6	26468	broad.mit.edu	36	9	124019386	124019386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199160	exon5	c.G464A	p.R155Q	.	.	.
OR1N2	138882	broad.mit.edu	36	9	124355379	124355379	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004457	exon1	c.G110A	p.W37X	.	.	.
OR5C1	392391	broad.mit.edu	36	9	124591715	124591715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001923	exon1	c.C683T	p.A228V	.	.	.
NR6A1	2649	broad.mit.edu	36	9	126338133	126338133	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033334	exon7	c.C924A	p.F308L	.	.	.
SCAI	286205	broad.mit.edu	36	9	126829005	126829005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173690	exon7	c.G488A	p.R163H	.	.	.
GAPVD1	26130	broad.mit.edu	36	9	127151533	127151533	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015635	exon20	c.C3294T	p.D1098D	.	.	.
PBX3	5090	broad.mit.edu	36	9	127731860	127731860	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006195	exon4	c.C622T	p.R208X	.	.	.
ZBTB34	403341	broad.mit.edu	36	9	128682838	128682838	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099270	exon2	c.C1327A	p.L443I	.	.	.
ODF2	4957	broad.mit.edu	36	9	130296743	130296743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153439	exon16	c.C1874T	p.A625V	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130385985	130385985	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon16	c.G2109A	p.S703S	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130407423	130407423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon30	c.C3832T	p.R1278C	.	.	.
DOLK	22845	broad.mit.edu	36	9	130749061	130749061	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014908	exon1	c.G343C	p.A115P	.	.	.
TOR1A	1861	broad.mit.edu	36	9	131616309	131616309	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000113	exon5	c.C762T	p.H254H	.	.	.
ASS1	445	broad.mit.edu	36	9	132331952	132331952	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000050	exon7	c.T440C	p.M147T	.	.	.
SETX	23064	broad.mit.edu	36	9	134214535	134214535	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon3	c.C102T	p.D34D	.	.	.
C9orf96	169436	broad.mit.edu	36	9	135260209	135260209	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153710	exon18	c.C1886T	p.P629L	.	.	.
VAV2	7410	broad.mit.edu	36	9	135623513	135623513	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134398	exon29	c.G2461T	p.A821S	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136795385	136795385	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000093	exon20	c.G2015T	p.R672M	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136850560	136850560	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000093	exon56	c.G4384A	p.G1462S	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138491071	138491071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon3	c.C818T	p.A273V	.	.	.
C9orf173	441476	broad.mit.edu	36	9	139266347	139266347	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004353	exon3	c.G342A	p.P114P	.	.	.
NOXA1	10811	broad.mit.edu	36	9	139440559	139440559	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006647	exon2	c.G216A	p.A72A	.	.	.
PNPLA7	375775	broad.mit.edu	36	9	139535935	139535935	+	Missense_Mutation	SNP	C	T	T	rs2298171	byFrequency;byHapMap	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152286	exon9	c.G856A	p.G286S	.	.	.
NFIB	4781	broad.mit.edu	36	9	14136730	14136730	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190738	exon6	c.T961C	p.S321P	.	.	.
TTC39B	158219	broad.mit.edu	36	9	15215991	15215991	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168340	exon3	c.G295A	p.A99T	.	.	.
SNAPC3	6619	broad.mit.edu	36	9	15413928	15413928	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039697	exon2	c.T336C	p.L112L	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15685249	15685249	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173550	exon11	c.C1232A	p.A411D	.	.	.
MLLT3	4300	broad.mit.edu	36	9	20403791	20403791	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004529	exon5	c.G1053A	p.T351T	.	.	.
KCNV2	169522	broad.mit.edu	36	9	2707905	2707905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133497	exon1	c.G166A	p.E56K	.	.	.
KCNV2	169522	broad.mit.edu	36	9	2708710	2708710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133497	exon1	c.C971T	p.T324M	.	.	.
KCNV2	169522	broad.mit.edu	36	9	2708982	2708982	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133497	exon1	c.C1243T	p.L415L	.	.	.
TEK	7010	broad.mit.edu	36	9	27147989	27147989	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000459	exon2	c.G213A	p.P71P	.	.	.
KIAA0020	9933	broad.mit.edu	36	9	2801476	2801476	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014878	exon15	c.C1520T	p.A507V	.	.	.
B4GALT1	2683	broad.mit.edu	36	9	33103848	33103848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001497	exon5	c.C988T	p.R330C	.	.	.
AQP7	364	broad.mit.edu	36	9	33375103	33375103	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170	exon8	c.C929T	p.T310M	.	.	.
AQP3	360	broad.mit.edu	36	9	33433872	33433872	+	Missense_Mutation	SNP	C	T	T	rs34942735	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004925	exon2	c.G127A	p.V43M	.	.	.
UBAP2	55833	broad.mit.edu	36	9	33914247	33914247	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018449	exon23	c.G2547A	p.A849A	.	.	.
IL11RA	3590	broad.mit.edu	36	9	34648543	34648543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142784	exon8	c.C673T	p.R225W	.	.	.
VCP	7415	broad.mit.edu	36	9	35052244	35052244	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007126	exon8	c.G915A	p.E305E	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35388614	35388614	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006377	exon31	c.G3649T	p.E1217X	.	.	.
NPR2	4882	broad.mit.edu	36	9	35789675	35789675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003995	exon3	c.C934T	p.R312C	.	.	.
SPAG8	26206	broad.mit.edu	36	9	35800674	35800674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172312	exon4	c.C1045T	p.R349C	.	.	.
RECK	8434	broad.mit.edu	36	9	36112920	36112920	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021111	exon21	c.T2794G	p.S932A	.	.	.
MELK	9833	broad.mit.edu	36	9	36660999	36660999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014791	exon16	c.C1510T	p.R504C	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37730705	37730705	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014907	exon15	c.C2180T	p.A727V	.	.	.
ALDH1B1	219	broad.mit.edu	36	9	38386960	38386960	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000692	exon2	c.C1215T	p.G405G	.	.	.
GLIS3	169792	broad.mit.edu	36	9	4108462	4108462	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152629	exon3	c.C551A	p.A184D	.	.	.
PRKACG	5568	broad.mit.edu	36	9	70818714	70818714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002732	exon1	c.G115A	p.A39T	.	.	.
KDM4C	23081	broad.mit.edu	36	9	7093868	7093868	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015061	exon18	c.G2608A	p.V870M	.	.	.
MAMDC2	256691	broad.mit.edu	36	9	71948359	71948359	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153267	exon9	c.C1208T	p.S403F	.	.	.
MAMDC2	256691	broad.mit.edu	36	9	72030524	72030524	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153267	exon13	c.T1950C	p.S650S	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73494891	73494891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013390	exon22	c.C3788T	p.T1263M	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76543173	76543173	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177310	exon36	c.C5731T	p.R1911W	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79145157	79145157	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018037	exon49	c.C6780T	p.D2260D	.	.	.
HNRNPK	3190	broad.mit.edu	36	9	85776804	85776804	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002140	exon11	c.C766T	p.R256W	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89491327	89491327	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon21	c.G2266A	p.V756M	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89512033	89512033	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon26	c.G4227T	p.E1409D	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89690752	89690752	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178828	exon4	c.G1530A	p.W510X	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89692573	89692573	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178828	exon4	c.G3351T	p.P1117P	.	.	.
CDK20	23552	broad.mit.edu	36	9	89775350	89775350	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039803	exon5	c.C516T	p.P172P	.	.	.
SECISBP2	79048	broad.mit.edu	36	9	91155432	91155432	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024077	exon14	c.T1958C	p.V653A	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91168680	91168680	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142287	exon19	c.G1888A	p.A630T	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91196018	91196018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142287	exon11	c.G755A	p.R252Q	.	.	.
PHF2	5253	broad.mit.edu	36	9	95465010	95465010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005392	exon13	c.G1699A	p.A567T	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97318796	97318796	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083603	exon1	c.G128A	p.G43E	.	.	.
ZNF367	195828	broad.mit.edu	36	9	98200404	98200404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153695	exon2	c.G434A	p.R145H	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99178939	99178939	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020893	exon37	c.A5048G	p.Q1683R	.	.	.
CORO2A	7464	broad.mit.edu	36	9	99934294	99934294	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003389	exon6	c.G759T	p.W253C	.	.	.
PHF2	5253	broad.mit.edu	36	9	95462433	95462433	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005392	exon12	c.1468delA	p.K490fs	.	.	.
CXorf66	347487	broad.mit.edu	36	X	138865990	138865991	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013403	exon3	c.817_818insA	p.H273fs	.	.	.
XKRX	402415	broad.mit.edu	36	X	100064534	100064534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212559	exon2	c.C508T	p.R170C	.	.	.
GLRA4	441509	broad.mit.edu	36	X	102860658	102860658	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172285	exon7	c.C916T	p.R306W	.	.	.
TEX13B	56156	broad.mit.edu	36	X	107111917	107111917	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031273	exon2	c.G97A	p.E33K	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107305055	107305055	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033641	exon30	c.T2877C	p.R959R	.	.	.
KLHL13	90293	broad.mit.edu	36	X	116927580	116927580	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168300	exon5	c.C1060T	p.R354C	.	.	.
NKRF	55922	broad.mit.edu	36	X	118608028	118608028	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173487	exon4	c.G1433A	p.R478Q	.	.	.
ZBTB33	10009	broad.mit.edu	36	X	119271963	119271963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006777	exon2	c.G665A	p.G222D	.	.	.
UTP14A	10813	broad.mit.edu	36	X	128873483	128873483	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006649	exon6	c.G442A	p.V148I	.	.	.
GPC3	2719	broad.mit.edu	36	X	132661625	132661625	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164618	exon4	c.A1082G	p.H361R	.	.	.
HPRT1	3251	broad.mit.edu	36	X	133436885	133436885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000194	exon3	c.G143A	p.R48H	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134816325	134816325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018666	exon7	c.C685T	p.R229C	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135592629	135592629	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004840	exon13	c.T1433C	p.L478P	.	.	.
CLIC2	1193	broad.mit.edu	36	X	154160413	154160413	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001289	exon6	c.C717T	p.Y239Y	.	.	.
NHS	4810	broad.mit.edu	36	X	17656038	17656038	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon7	c.C3360T	p.D1120D	.	.	.
SCML2	10389	broad.mit.edu	36	X	18175873	18175873	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006089	exon12	c.A1507C	p.T503P	.	.	.
PHKA2	5256	broad.mit.edu	36	X	18828729	18828729	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000292	exon28	c.C3037T	p.R1013W	.	.	.
GPR64	10149	broad.mit.edu	36	X	18938801	18938801	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184837	exon15	c.C1026T	p.S342S	.	.	.
PCYT1B	9468	broad.mit.edu	36	X	24507431	24507431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163264	exon6	c.C577T	p.R193C	.	.	.
MAGEB18	286514	broad.mit.edu	36	X	26067616	26067616	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173699	exon2	c.G593A	p.G198D	.	.	.
TAB3	257397	broad.mit.edu	36	X	30782953	30782953	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152787	exon6	c.G750A	p.W250X	.	.	.
SYTL5	94122	broad.mit.edu	36	X	37846609	37846609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138780	exon10	c.G1133A	p.R378H	.	.	.
DUSP21	63904	broad.mit.edu	36	X	44588679	44588679	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022076	exon1	c.G357A	p.A119A	.	.	.
TIMP1	7076	broad.mit.edu	36	X	47329624	47329624	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003254	exon4	c.G278A	p.C93Y	.	.	.
SSX5	6758	broad.mit.edu	36	X	47939671	47939671	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175723	exon2	c.A68C	p.K23T	.	.	.
GATA1	2623	broad.mit.edu	36	X	48535423	48535423	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002049	exon3	c.C449A	p.P150H	.	.	.
GRIPAP1	56850	broad.mit.edu	36	X	48732311	48732311	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020137	exon7	c.T613C	p.L205L	.	.	.
SMC1A	8243	broad.mit.edu	36	X	53455726	53455726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006306	exon6	c.C1057T	p.R353W	.	.	.
PAGE5	90737	broad.mit.edu	36	X	55263766	55263766	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130467	exon1	c.G9A	p.A3A	.	.	.
DGAT2L6	347516	broad.mit.edu	36	X	69338529	69338529	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198512	exon5	c.C537T	p.A179A	.	.	.
P2RY4	5030	broad.mit.edu	36	X	69395466	69395466	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002565	exon1	c.G734A	p.R245H	.	.	.
ARR3	407	broad.mit.edu	36	X	69414014	69414014	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004312	exon9	c.G519A	p.P173P	.	.	.
GDPD2	54857	broad.mit.edu	36	X	69563573	69563573	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171193	exon7	c.G452A	p.R151Q	.	.	.
TAF1	6872	broad.mit.edu	36	X	70524015	70524015	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138923	exon15	c.G2403A	p.T801T	.	.	.
MAGEE2	139599	broad.mit.edu	36	X	74921522	74921522	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138703	exon1	c.C90T	p.N30N	.	.	.
FAM46D	169966	broad.mit.edu	36	X	79585172	79585172	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170574	exon5	c.A478C	p.K160Q	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86659860	86659860	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057162	exon1	c.A308G	p.N103S	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79865933	79865933	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153252	exon16	c.1620delT	p.F540fs	.	.	.
