Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ABCC1	4363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	16149977	16149977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ABCG5	64240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44065039	44065039	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ACAD10	80724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	112167663	112167663	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ACO1	48	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	32425989	32425989	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ADAMTS13	11093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	136290722	136290722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ARHGAP6	395	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	11204520	11204520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ASB1	51665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	239353054	239353054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ATF7IP	55729	hgsc.bcm.edu;ucsc.edu	37	12	14650805	14650805	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
B3GNT6	192134	broad.mit.edu;hgsc.bcm.edu	37	11	76751055	76751055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
BLMH	642	hgsc.bcm.edu;ucsc.edu	37	17	28599644	28599655	+	Frame_Shift_Del	DEL	AGCCTAGAAACA	AGCCTAGAAACA	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	AGCCTAGAAACA	AGCCTAGAAACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
BMP6	654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7727745	7727745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
BSDC1	55108	hgsc.bcm.edu;ucsc.edu	37	1	32842305	32842306	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
C16orf3	750	hgsc.bcm.edu	37	16	90095582	90095582	+	Missense_Mutation	SNP	T	T	C	rs62640380	byfrequency	TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
C1orf128	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	24106410	24106410	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
C6orf58	352999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	127901450	127901450	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
C9orf84	158401	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	114518734	114518734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CACYBP	27101	hgsc.bcm.edu;ucsc.edu	37	1	174977836	174977836	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CADM2	253559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	85851226	85851226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CAPZA2	830	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	116538867	116538867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CCDC76	0	hgsc.bcm.edu;ucsc.edu	37	1	100613814	100613814	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CCNDBP1	23582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	43482264	43482264	+	Silent	SNP	A	A	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CHI3L1	1116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	203155750	203155750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CLEC12A	160364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10132016	10132016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CLEC12A	160364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	10132045	10132045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CLIP1	6249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	122826194	122826194	+	Silent	SNP	T	T	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
COL4A1	1282	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	110835582	110835582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
COLEC10	10584	broad.mit.edu;hgsc.bcm.edu	37	8	120101991	120101991	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CPNE1	8904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	34219486	34219486	+	Silent	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CPXM1	56265	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	2775211	2775211	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CSF2RA	1438	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	1422842	1422842	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CSMD1	64478	hgsc.bcm.edu;ucsc.edu	37	8	3141831	3141831	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu	37	8	113421242	113421242	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
DFNA5	1687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	24738852	24738852	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
DHRS4L2	317749	broad.mit.edu;hgsc.bcm.edu	37	14	24459472	24459472	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
DRD3	1814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113858392	113858392	+	Silent	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
EDC4	23644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	67912713	67912713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
EPS8L2	64787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	710481	710481	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
FAM101A	144347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	124798830	124798830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
FASTKD2	22868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	207639092	207639092	+	Silent	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
FLJ43860	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	142445230	142445230	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
FPGS	2356	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	130575544	130575544	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
FYB	2533	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	39202847	39202847	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
GDAP1L1	78997	hgsc.bcm.edu	37	20	42876070	42876070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
GRAMD1C	54762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	113627861	113627861	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
GTF3C1	2975	hgsc.bcm.edu;ucsc.edu	37	16	27500985	27500986	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
H3F3C	440093	broad.mit.edu;hgsc.bcm.edu	37	12	31944927	31944927	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
HMCN1	83872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	186151399	186151399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
HPS6	79803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	103827518	103827518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
IDE	3416	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	94297189	94297189	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
IDI2	91734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	1066837	1066837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ITSN2	50618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24535240	24535240	+	Silent	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
KHK	3795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27320383	27320383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
KIAA1543	0	hgsc.bcm.edu	37	19	7675454	7675455	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
LACTB	114294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63419762	63419762	+	Silent	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
LAMC3	10319	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133914405	133914405	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
LARP1	23367	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	154191178	154191185	+	Frame_Shift_Del	DEL	GTCTTGAA	GTCTTGAA	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	GTCTTGAA	GTCTTGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
LPCAT3	10162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7086391	7086391	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
LRRC8B	23507	broad.mit.edu;ucsc.edu	37	1	90048980	90048980	+	Silent	SNP	A	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
LRRIQ4	344657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	169555371	169555371	+	Silent	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MAML1	9794	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	179193308	179193308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MFAP3L	9848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	170913100	170913100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MLL	4297	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	118352713	118352713	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MMP11	4320	hgsc.bcm.edu;ucsc.edu	37	22	24121517	24121517	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MSL1	339287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38285875	38285875	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MUC6	4588	broad.mit.edu;hgsc.bcm.edu	37	11	1017614	1017614	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MYBPC1	4604	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	102067221	102067221	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MYO5C	55930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	52521378	52521378	+	Silent	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
NCAPH	23397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97024901	97024901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
NCOA2	10499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	71050557	71050557	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
NFIX	4784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	13192531	13192531	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
NID2	22795	broad.mit.edu;hgsc.bcm.edu	37	14	52534720	52534720	+	Silent	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
NKX2-2	4821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	21494259	21494259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
NPNT	255743	broad.mit.edu;ucsc.edu	37	4	106861265	106861265	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
NXPH3	11248	hgsc.bcm.edu;ucsc.edu	37	17	47656509	47656509	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
OBSCN	84033	broad.mit.edu;hgsc.bcm.edu	37	1	228559759	228559759	+	Silent	SNP	T	T	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
OBSCN	84033	hgsc.bcm.edu	37	1	228505318	228505318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
OR1B1	347169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	125391234	125391234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
OR51A2	401667	broad.mit.edu;hgsc.bcm.edu	37	11	4976107	4976107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
OR8G2	26492	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	124095984	124095984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
OTUD4	54726	hgsc.bcm.edu	37	4	146076739	146076739	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
OTUD6B	51633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	92083453	92083453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PACS2	23241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	105843253	105843253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PBRM1	55193	hgsc.bcm.edu	37	3	52623267	52623267	+	Silent	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52623262	52623262	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PCDHB13	56123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	140596070	140596070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PDE4DIP	9659	hgsc.bcm.edu	37	1	145039594	145039594	+	Missense_Mutation	SNP	T	T	C	rs111958438		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PEX1	5189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	92132412	92132414	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PLAT	5327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	42036456	42036456	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
POLE3	54107	broad.mit.edu;hgsc.bcm.edu	37	9	116171064	116171064	+	RNA	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PPP1R10	5514	broad.mit.edu;hgsc.bcm.edu	37	6	30569885	30569885	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PTPN13	5783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	87679432	87679432	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PTPRN2	5799	broad.mit.edu;hgsc.bcm.edu	37	7	157985188	157985188	+	Splice_Site	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
PVRL3	25945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	110837735	110837735	+	Silent	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
RAB2B	84932	broad.mit.edu;hgsc.bcm.edu	37	14	21944786	21944786	+	RNA	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
RABGGTA	5875	hgsc.bcm.edu;ucsc.edu	37	14	24740082	24740084	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
RBAK	57786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	5104366	5104366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
RPH3A	22895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113285641	113285641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
RRM2	6241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	10269379	10269379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	23909182	23909182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SCRIB	23513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144874929	144874929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SETD4	54093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37418054	37418054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SKIV2L2	23517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54701366	54701366	+	Silent	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SLC16A14	151473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	230910577	230910577	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SON	6651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	34925507	34925507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SRSF2IP	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	46322466	46322466	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SUOX	6821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	56396036	56396036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SUZ12	23512	hgsc.bcm.edu	37	17	30310087	30310088	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152757208	152757208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TACR2	6865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	71166878	71166878	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TAF1A	9015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	222750908	222750908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
THAP5	168451	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	108205177	108205177	+	Missense_Mutation	SNP	G	G	T	rs192004311	by1000genomes;alternate_allele	TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TMEM179B	374395	broad.mit.edu;ucsc.edu	37	11	62557433	62557433	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TMEM67	91147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	94821184	94821184	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TMPRSS11D	9407	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	68692994	68692994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TOP1MT	116447	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	144411529	144411529	+	Silent	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TRHDE	29953	broad.mit.edu;ucsc.edu	37	12	72956769	72956769	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TTC37	9652	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	94860289	94860289	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
TUBGCP3	10426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	113242269	113242269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
USP9X	8239	broad.mit.edu;hgsc.bcm.edu	37	X	41088595	41088595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
VNN2	8875	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	133065439	133065439	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
VRK3	51231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50512604	50512604	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
WDR19	57728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	39206807	39206807	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
WDR81	124997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	1634217	1634217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ZCCHC3	85364	hgsc.bcm.edu	37	20	278733	278733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ZCCHC3	85364	hgsc.bcm.edu	37	20	278734	278734	+	Silent	SNP	C	C	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ZDHHC16	84287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99213291	99213291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ZDHHC16	84287	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99213292	99213292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ZNF561	93134	broad.mit.edu;hgsc.bcm.edu	37	19	9724746	9724746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ZNF677	342926	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53740381	53740381	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ADCK5	203054	broad.mit.edu	37	8	145617535	145617549	+	Splice_Site	DEL	GGGGGTGCAAGGTGA	-	-	rs11270020		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	GGGGGTGCAAGGTGA	GGGGGTGCAAGGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
C9orf98	0	broad.mit.edu	37	9	135702270	135702270	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CASKIN1	57524	broad.mit.edu	37	16	2230531	2230532	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
CNRIP1	25927	broad.mit.edu	37	2	68546472	68546472	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
FLJ10661	0	broad.mit.edu	37	8	8096026	8096026	+	RNA	SNP	T	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
LMBR1L	55716	broad.mit.edu	37	12	49496928	49496928	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
LOC645166	645166	broad.mit.edu	37	1	148933289	148933289	+	Splice_Site	SNP	A	G	G	rs9729175	bycluster;by2hit2allele	TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MAP1S	55201	broad.mit.edu	37	19	17838751	17838751	+	Missense_Mutation	SNP	C	A	A	rs138807804	alternate_allele	TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MLXIPL	51085	broad.mit.edu	37	7	73011708	73011708	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
MYCBP	26292	broad.mit.edu	37	1	39338699	39338700	+	Frame_Shift_Del	DEL	GC	-	-	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
NOXA1	10811	broad.mit.edu	37	9	140323753	140323754	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
SCRT2	85508	broad.mit.edu	37	20	656174	656174	+	Silent	SNP	G	A	A	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
ZNF492	57615	broad.mit.edu	37	19	22847963	22847963	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-BP-5168-01A-01D-1421-08	TCGA-BP-5168-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9930560d-22e6-43aa-a6f0-02515f7af8f0	e250a536-2616-4483-8fd8-ceb70790d262	
