Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ESPN	83715	ucsc.edu	37	1	6512054	6512054	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ESPN-514	NM_031475	exon10	c.C2223T	p.P741P	CATCCCCACGCAC	.	11	4	19	0	.	7	4	3	0	0
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100346675	100346675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	AGL-92	NM_000644	exon15	c.C1943G	p.S648C	TTGTTTCTATGGC	.	96	44	104	0	.	18	14	4	0	0
TMEM79	84283	broad.mit.edu	37	1	156256105	156256105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TMEM79-90	NM_032323	exon3	c.G812C	p.G271A	CCTTTGGGGAGCC	.	106	3	143	0	.	3	3	0	0	0
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171535917	171535917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	NM_015172	exon22	c.G6487A	p.E2163K	GTCTCAGAAATGT	.	37	11	49	0	.	42	18	24	0	0
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230841797	230841797	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	AGT-226	NM_000029	exon3	c.T1006A	p.F336I	CAGTGAAGGGCAC	.	126	57	146	0	.	51	21	30	0	0
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	375449	375449	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	DIP2C-156	NM_014974	exon30	c.T3677A	p.V1226D	TCTCGGACTTTGT	.	54	24	32	0	.	27	16	11	0	0
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	31812949	31812949	+	Missense_Mutation	SNP	G	G	T	rs35653460	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZEB1-518	NM_001174096	exon8	c.G2693T	p.R898L	AAATGCGGAAGAC	.	147	59	140	0	G|0.987;A|0.013	13	7	6	0	0
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105763115	105763115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SLK-549	NM_014720	exon9	c.G2179A	p.G727S	GAAATAGGTTCTT	.	68	31	76	1	.	35	18	17	0	0
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	121692658	121692658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SEC23IP-93	NM_007190	exon17	c.T2900C	p.L967P	TCGCTCTTCAGAG	.	152	68	128	0	.	25	13	12	0	0
ADAM12	8038	broad.mit.edu;ucsc.edu	37	10	127789653	127789653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ADAM12-716	NM_021641	exon9	c.C908T	p.A303V	AGCTGCGCATTGT	.	62	6	71	0	.	0	0	0	0	0
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128788791	128788791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	DOCK1-698	NM_001380	exon6	c.C397G	p.L133V	CAAATTCTTTCTG	.	29	12	48	0	.	17	8	9	0	0
OR56A1	120796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6048449	6048449	+	Silent	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	OR56A1-115	NM_001001917	exon1	c.T486C	p.L162L	TGCAGTAAGAAGC	.	125	56	148	0	.	0	0	0	0	0
MSANTD4	84437	broad.mit.edu	37	11	105881299	105881299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	NM_032424	exon2	c.G346C	p.G116R	GGAATCCAATCTT	.	129	3	173	0	.	24	24	0	0	0
DDX12P	440081	ucsc.edu	37	12	9574037	9574037	+	RNA	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	.	.	.	.	TGGAGACCCCGCT	.	161	5	107	2	.	40	11	28	0	1
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	22623804	22623804	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	NM_014802	exon21	c.G2400A	p.Q800Q	TAAAGCCTGATTT	.	93	27	78	0	.	43	26	17	0	0
ITGB7	3695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53586547	53586547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ITGB7-231	NM_000889	exon13	c.A1874G	p.Q625R	AAGCACTGGCAGC	.	106	65	75	0	.	37	11	26	0	0
TDG	6996	hgsc.bcm.edu	37	12	104378526	104378526	+	Splice_Site	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TDG-661	NM_003211	exon8	c.793-1G>T	.	ATTCTAGCTCTGC	.	63	5	49	1	.	0	0	0	0	0
MTIF3	219402	ucsc.edu	37	13	28014392	28014392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	MTIF3-92	NM_001166263	exon4	c.G194A	p.G65E	TTTTTTCCTTCAT	.	139	1	149	0	.	33	29	4	0	0
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	44975261	44975261	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FSCB-587	NM_032135	exon1	c.G930A	p.A310A	ATTCTCCGCAACT	.	88	38	88	0	.	0	0	0	0	0
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	90429932	90429932	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TDP1-92	NM_018319	exon3	c.G474A	p.L158L	CATGCTGGATAAA	.	125	51	137	0	.	7	2	5	0	0
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	71341787	71341787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LRRC49-91	NM_001199017	exon16	c.G1912A	p.E638K	TATATAGAAGACC	.	121	43	115	1	.	10	10	0	0	0
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	71341790	71341790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LRRC49-91	NM_001199017	exon16	c.G1915A	p.D639N	ATAGAAGACCTTG	.	125	46	122	1	.	5	5	0	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2814253	2814253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SRRM2-93	NM_016333	exon11	c.G3724A	p.V1242I	GAGGTGGTAGAGA	.	303	72	221	0	.	84	60	24	0	0
SRCAP	10847	broad.mit.edu	37	16	30735227	30735227	+	Silent	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SRCAP-94	NM_006662	exon25	c.A4482C	p.A1494A	CTTGGCACCATCT	.	153	7	125	0	.	86	85	1	0	0
C16orf86	388284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67702137	67702137	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	NM_001012984	exon4	c.C588G	p.Y196X	CCAGTACGTCAAC	.	32	18	25	0	.	17	9	8	0	0
CPNE7	27132	broad.mit.edu	37	16	89662976	89662976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CPNE7-90	NM_014427	exon17	c.C1849A	p.P617T	CTGCCCCCGAGAA	.	92	8	71	0	.	4	4	0	0	0
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1538231	1538231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SCARF1-91	NM_003693	exon11	c.A2314G	p.R772G	CTGGTCTGACTGC	.	87	51	75	0	.	11	7	3	1	0
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3788622	3788622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CAMKK1-334	NM_032294	exon2	c.G360C	p.E120D	ACCAACCTCTGCA	.	46	14	39	0	.	0	0	0	0	0
ZNF232	7775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5009512	5009512	+	Silent	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF232-154	NM_014519	exon5	c.T942C	p.Y314Y	TGAGTTATAAATG	.	188	47	136	0	.	5	2	3	0	0
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26818545	26818545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SLC13A2-90	NM_001145975	exon5	c.G812A	p.S271N	GCATGAGCCTGTG	.	150	46	131	0	.	1	1	0	0	0
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26919846	26919846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SPAG5-90	NM_006461	exon3	c.A416G	p.Q139R	TGTTGCTGCCCCA	.	253	145	185	0	.	5	5	0	0	0
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73831766	73831766	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	UNC13D-92	NM_199242	exon19	c.C1689A	p.L563L	CTCCTTGAGGCTG	.	70	23	62	1	.	1	1	0	0	0
CTAGE1	64693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	19997258	19997258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CTAGE1-1	NM_172241	exon1	c.C517T	p.R173W	CCAACCGTTCTTC	.	169	71	253	0	.	0	0	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	151	2	127	0	.	0	0	0	0	0
ZNF20	7568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12246707	12246707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF20-22	NM_021143	exon2	c.T16G	p.S6A	CCACTGAATCCTG	.	87	36	128	1	.	0	0	0	0	0
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35617247	35617247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LGI4-91	NM_139284	exon8	c.T1226C	p.V409A	GCATAGACATCCT	.	36	17	30	0	.	0	0	0	0	0
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40520846	40520846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF546-155	NM_178544	exon7	c.G1669A	p.E557K	TGTAAGGAATGTG	.	84	45	74	0	.	4	2	0	2	0
EGLN2	112398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41306603	41306603	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	EGLN2-228	NM_053046	exon2	c.T126A	p.C42X	GCCCTGTCCCCTG	.	52	15	56	0	.	26	16	10	0	0
IZUMO2	126123	ucsc.edu;bcgsc.ca	37	19	50666348	50666348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	IZUMO2-90	NM_152358	exon1	c.T104C	p.L35P	GAGCGCAGGTGAC	.	16	4	26	0	.	0	0	0	0	0
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20518349	20518349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	PUM2-91	NM_015317	exon2	c.G109A	p.G37S	ATATGCCTTTTTG	.	91	35	108	0	.	25	14	11	0	0
UNC50	25972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99232895	99232895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	UNC50-90	NM_014044	exon5	c.A542T	p.H181L	TGGCAGATGTTAT	.	106	45	140	1	.	3	1	2	0	0
TTN	7273	ucsc.edu;bcgsc.ca	37	2	179611166	179611166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TTN-636	NM_133379	exon46	c.G15961A	p.V5321I	CTTTAACGTCTTT	.	36	10	67	0	.	0	0	0	0	0
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197986231	197986231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ANKRD44-230	NM_153697	exon8	c.A731G	p.H244R	GCGATGTGAAGCG	.	50	18	54	0	.	0	0	0	0	0
FZD5	7855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	208632800	208632800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FZD5-660	NM_003468	exon2	c.T664C	p.C222R	GGTAGCAGGGTAC	.	24	11	25	0	.	37	19	18	0	0
ZNF142	7701	ucsc.edu;bcgsc.ca	37	2	219503380	219503380	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF142-137	NM_001105537	exon10	c.C4746A	p.T1582T	AAGGTGGGTGCGC	.	49	10	66	2	.	31	19	12	0	0
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	19665982	19665982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SLC24A3-91	NM_020689	exon12	c.C1301T	p.P434L	AAGGACCGTACAC	.	106	41	102	0	.	1	0	1	0	0
PCIF1	63935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44574469	44574469	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	PCIF1-91	NM_022104	exon12	c.A1288C	p.I430L	GTCTGCATCCGGT	.	147	51	141	1	.	61	25	36	0	0
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47641990	47641990	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ARFGEF2-358	NM_006420	exon36	c.C4896T	p.Y1632Y	CAATTACGAGCAG	.	66	27	90	0	.	30	10	20	0	0
SNAI1	6615	ucsc.edu	37	20	48600833	48600833	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SNAI1-227	NM_005985	exon2	c.C555T	p.C185C	AACCTGCGGGAAG	.	25	4	27	0	.	1	1	0	0	0
LAMA5	3911	ucsc.edu	37	20	60891785	60891785	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LAMA5-93	NM_005560	exon57	c.G7698A	p.L2566L	GTTGGCCAGGAGC	.	31	5	24	0	.	73	73	0	0	0
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45978008	45978008	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	KRTAP10-3-91	NM_198696	exon1	c.C591T	p.L197L	GCAGAGGAGGGAC	.	33	16	68	0	.	0	0	0	0	0
GSTT1	2952	broad.mit.edu;bcgsc.ca	37	22	24376512	24376512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	GSTT1-91	NM_000853	exon5	c.G634A	p.E212K	TGACCTCATGGGC	.	80	7	49	0	.	233	227	6	0	0
SEPT3	55964	hgsc.bcm.edu	37	22	42373072	42373072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SEPT3-68	NM_019106	exon1	c.T4G	p.S2A	TTCATGTCCAAAG	.	38	3	32	0	.	0	0	0	0	0
ZNF620	253639	bcgsc.ca	37	3	40553892	40553892	+	Splice_Site	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF620-91	NM_175888	exon4	c.152-1G>C	.	TGGGCAGCATTCC	.	57	4	36	0	.	0	0	0	0	0
FBXW12	285231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48436087	48436087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FBXW12-226	NM_207102	exon11	c.A1358G	p.D453G	TAAGTGACTCCAG	.	197	65	121	1	.	0	0	0	0	0
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113721375	113721375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	KIAA1407-92	NM_020817	exon12	c.G1989T	p.E663D	TGCTCTCTCTTCC	.	108	34	51	0	.	4	2	2	0	0
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121217327	121217327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	POLQ-664	NM_199420	exon13	c.A2150C	p.K717T	TACCTTTTATGGA	.	221	118	170	0	.	0	0	0	0	0
SEC62	7095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169706125	169706125	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SEC62-69	NM_003262	exon7	c.C708T	p.A236A	TGTAGCCAGTATT	.	180	49	150	0	.	89	59	30	0	0
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195006526	195006526	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ACAP2-136	NM_012287	exon22	c.A2235G	p.P745P	TTGACCTGGCTGT	.	81	15	63	0	.	1	0	1	0	0
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	197687145	197687145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LMLN-91	NM_001136049	exon1	c.G53A	p.G18D	GAGTGGGTTACTC	.	61	13	47	0	.	9	9	0	0	0
CWH43	80157	broad.mit.edu	37	4	49040168	49040168	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CWH43-93	NM_025087	exon13	c.C1774G	p.L592V	GATTATCTACAGC	.	284	5	290	0	.	0	0	0	0	0
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	106157461	106157461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TET2-4618	NM_001127208	exon3	c.G2362T	p.E788X	CATGGTGAAAATC	.	49	24	43	0	.	6	3	3	0	0
TRPC3	7222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122853525	122853525	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TRPC3-92	NM_001130698	exon2	c.C888T	p.S296S	AGCCGGGCTGGCC	.	29	10	46	0	.	0	0	0	0	0
CPE	1363	bcgsc.ca	37	4	166385584	166385584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CPE-155	NM_001873	exon2	c.A350G	p.E117G	GGAATGAGGCTGT	.	59	4	67	0	.	40	40	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187530418	187530418	+	Silent	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FAT1-34	NM_005245	exon16	c.A10125T	p.I3375I	GCCATCTATAATT	.	82	32	73	0	.	236	114	122	0	0
AGGF1	55109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76344781	76344781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	AGGF1-117	NM_018046	exon8	c.C1334A	p.T445N	AACATACTCTCCG	.	179	82	150	0	.	33	15	18	0	0
PCDH12	51294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141336615	141336615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	PCDH12-93	NM_016580	exon1	c.G802A	p.A268T	CTGTGGCGGTCAG	.	97	37	76	0	.	5	5	0	0	0
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	177642285	177642285	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	AGXT2L2-91	NM_153373	exon9	c.G1074A	p.G358G	GACATCCCCGACG	.	53	27	62	0	.	0	0	0	0	0
OR2Y1	134083	broad.mit.edu;bcgsc.ca	37	5	180166694	180166694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	OR2Y1-68	NM_001001657	exon1	c.G365A	p.R122H	GCATAGCGGTCAA	.	35	11	49	0	.	0	0	0	0	0
MRS2	57380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24418322	24418322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	MRS2-68	NM_020662	exon8	c.A847T	p.S283C	AAGAGCAGTGCTG	.	99	43	74	1	.	0	0	0	0	0
KCTD20	222658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36454734	36454734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	KCTD20-92	NM_173562	exon8	c.C1042T	p.R348C	GTACAACGCCCCT	.	119	45	182	0	.	31	17	14	0	0
ULBP1	80329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150289835	150289835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ULBP1-91	NM_025218	exon2	c.C178A	p.P60T	GAAAGGCCTTTTC	.	192	90	213	0	.	0	0	0	0	0
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168344092	168344092	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	MLLT4-685	NM_001040000	exon24	c.T3155A	p.L1052Q	GACGTCTAGCTGC	.	250	105	233	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5401235	5401235	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TNRC18-46	NM_001080495	exon14	c.A4651C	p.S1551R	CGCTACTGTGGCC	.	15	13	6	2	.	0	0	0	0	0
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5568236	5568236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ACTB-226	NM_001101	exon4	c.A478G	p.T160A	TGTGGGTGACCCC	.	149	98	152	1	.	5733	2411	3312	4	6
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6639834	6639834	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	C7orf26-91	NM_024067	exon4	c.T955G	p.F319V	ATCCTCTTCGACC	.	46	29	48	0	.	33	15	18	0	0
ASB4	51666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95125264	95125264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ASB4-226	NM_016116	exon2	c.G382A	p.D128N	CTCTGTGATCGTG	.	112	23	101	0	.	0	0	0	0	0
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107808822	107808822	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	NRCAM-156	NM_001037132	exon26	c.C3213T	p.S1071S	AAGATTGCTGATC	.	81	27	66	0	.	0	0	0	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	61654762	61654762	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CHD7-141	NM_017780	exon2	c.T771C	p.H257H	GTTCCATCACCAC	.	218	89	258	1	.	5	3	2	0	0
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8460558	8460558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	PTPRD-912	NM_002839	exon33	c.C3728A	p.T1243N	GGGCTGGTTGCAT	.	94	40	85	1	.	0	0	0	0	0
CEL	1056	broad.mit.edu	37	9	135941956	135941956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CEL-91	NM_001807	exon5	c.G587T	p.W196L	TTGCTTGGGTGAA	.	145	9	174	0	.	0	0	0	0	0
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140943670	140943670	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CACNA1B-138	NM_001243812	exon24	c.T3613C	p.L1205L	ATCGACTTGGGAC	.	88	38	89	0	.	0	0	0	0	0
CASK	8573	hgsc.bcm.edu	37	X	41448782	41448782	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CASK-616	NM_001126054	exon13	c.C1219G	p.Q407E	CTCTCTGTACTGC	.	36	2	23	0	.	25	25	0	0	0
MAGT1	84061	ucsc.edu;bcgsc.ca	37	X	77150838	77150838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	MAGT1-63	NM_032121	exon1	c.G166T	p.V56F	AGGGAACGTCGCA	.	32	5	30	0	.	34	34	0	0	0
VPS9D1	9605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89775318	89775318	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	NM_004913	exon13	c.1644delC	p.P548fs	.	.	29	12	27	0	.	0	0	0	0	0
FAM20A	54757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	66538845	66538846	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FAM20A-90	NM_017565	exon6	c.917_918del	p.306_306del	.	.	131	30	102	0	.	0	0	0	0	0
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SYN2-24	.	.	.	.	CCAGCAAGCGCCG	.	9	3	13	0	.	0	0	0	0	0
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	48598002	48598003	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FRYL-69	NM_015030	exon14	c.1050_1051del	p.350_351del	.	.	64	18	54	0	.	0	0	0	0	0
NME5	8382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	137474383	137474383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	NME5-115	NM_003551	exon2	c.87delG	p.E29fs	.	.	63	32	64	0	.	0	0	0	0	0
NME5	8382	hgsc.bcm.edu	37	5	137474383	137474386	+	Frame_Shift_Del	DEL	CTCC	CTCC	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	CTCC	CTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	NME5-115	NM_003551	exon2	c.84_87del	p.28_29del	.	.	70	25	65	0	.	0	0	0	0	0
LCN12	286256	broad.mit.edu	37	9	139846817	139846819	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LCN12-90	NM_178536	exon1	c.38_40del	p.13_14del	TCTCCTTGCTGAA	.	25	7	28	0	.	0	0	0	0	0
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24175838	24175839	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SMARCB1-2699	NM_003073	exon8	c.1066_1067insT	p.L356fs	.	.	111	91	149	0	.	0	0	0	0	0
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	16552614	16552615	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	BNC2-92	NM_017637	exon5	c.583_584insTTC	p.S195delinsFS	.	.	77	17	90	0	.	0	0	0	0	0
NME5	8382	hgsc.bcm.edu	37	5	137474385	137474386	+	Nonsense_Mutation	DNP	CC	CC	AG	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	NME5		exon2	c.G84C	p.EE28D*	TATCTCCTCCTCT	.	66.0	33.0	67.0	0.0	.	0	0	0	0	0
GTF3C5	9328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135917679	135917680	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	GTF3C5		exon2	c.T360A	p.I120K	CACCATTTACAAA	.	94.0	35.0	119.0	0.0	.	0	0	0	0	0
POLDIP2	26073	broad.mit.edu	37	17	26684350	26684351	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	.	.	.	.	TCGACGCTGGCGA	.	31	18	9	0	.	0	0	0	0	0
