Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90048545	90048545	+	Silent	SNP	A	A	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	LRRC8B-92	NM_015350	exon5	c.A336G	p.K112K	CGAGAAACAGCTC	.	174	61	152	0	.	0	0	0	0	0
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	67726425	67726425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	CTNNA3-234	NM_013266	exon17	c.G2345A	p.C782Y	TGACTGCAGATTT	.	131	53	124	0	.	0	0	0	0	0
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3744474	3744474	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	NUP98-703	NM_005387	exon16	c.A2110T	p.S704C	CACTGCTTCCTTC	.	251	93	205	0	.	2	2	0	0	0
MTMR2	8898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	95568462	95568462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MTMR2-91	NM_016156	exon15	c.G1924A	p.V642I	ATACAACAGTTTG	.	158	56	124	1	.	37	17	20	0	0
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	3765545	3765545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	EFCAB4B-92	NM_001144958	exon9	c.C790A	p.Q264K	GCTCTTGACTGCG	.	109	37	85	0	.	0	0	0	0	0
HECTD1	25831	broad.mit.edu	37	14	31604103	31604103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	HECTD1-570	NM_015382	exon22	c.G3553A	p.D1185N	AGTCATCAACATG	.	119	5	95	0	.	2	2	0	0	0
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27445763	27445763	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	IL21R-660	NM_181079	exon4	c.C211G	p.L71V	CTCACCCTTACCT	.	89	42	64	0	.	0	0	0	0	0
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27459874	27459874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	IL21R-660	NM_181079	exon10	c.T953C	p.F318S	CACCCTTCACTGG	.	172	62	148	0	.	1	1	0	0	0
TRIM37	4591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57134407	57134407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	TRIM37-660	NM_015294	exon13	c.A1028G	p.Y343C	ACACGATATTCAT	.	36	21	46	0	.	0	0	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	118	2	117	0	.	1	1	0	0	0
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	30936011	30936011	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	ZNF536-144	NM_014717	exon2	c.G1542C	p.E514D	TGCGGAGATGGAC	.	44	21	31	0	.	0	0	0	0	0
CEACAM8	1088	broad.mit.edu	37	19	43098028	43098028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	CEACAM8-91	NM_001816	exon2	c.C89T	p.P30L	GTGGGCGGGTTCC	.	109	4	85	0	.	0	0	0	0	0
KCNN4	3783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44278354	44278354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	KCNN4-92	NM_002250	exon3	c.G673A	p.V225M	CGGCCACGGACAG	.	89	48	41	0	.	0	0	0	0	0
OTX1	5013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	63282730	63282730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	OTX1-70	NM_014562	exon5	c.T344A	p.V115E	CTCCAGTGCGGGA	.	239	86	149	0	.	0	0	0	0	0
PNO1	56902	bcgsc.ca	37	2	68388842	68388842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	PNO1-68	NM_020143	exon3	c.G385T	p.A129S	GTTAGTGCTCTGA	.	52	4	63	0	.	13	13	0	0	0
KCNJ3	3760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	155555531	155555531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	KCNJ3-92	NM_001260509	exon1	c.T244C	p.W82R	TGGCGCTGGAACC	.	467	30	352	0	.	1	1	0	0	0
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179615958	179615958	+	Silent	SNP	C	C	T	rs145004106		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	TTN-636	NM_133379	exon46	c.G11169A	p.T3723T	AGAAGACGTATCT	.	121	36	133	0	C|1.000;T|0.000	0	0	0	0	0
SLC11A1	6556	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219249037	219249037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	SLC11A1-93	NM_000578	exon3	c.C222A	p.D74E	CCTGGACCCAGGA	.	103	32	123	1	.	2	2	0	0	0
BPIFB3	359710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31660577	31660577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	.	NM_182658	exon14	c.A1379G	p.N460S	TTTCCAATTCAGT	.	163	62	191	0	.	0	0	0	0	0
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33874582	33874582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	FAM83C-92	NM_178468	exon4	c.C2000G	p.S667C	TCCCCAGACCCAG	.	236	101	173	0	.	0	0	0	0	0
TMPRSS3	64699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43802332	43802332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	TMPRSS3-155	NM_001256317	exon9	c.C794G	p.P265R	GACTTGGGGAGGT	.	70	27	67	0	.	0	0	0	0	0
MMP11	4320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24125618	24125618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MMP11-291	NM_005940	exon8	c.G1354T	p.G452C	CTGCGCGGCCGCC	.	166	21	116	0	.	52	44	8	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	115	18	92	0	.	0	0	0	0	0
CRBN	51185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	3209472	3209472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	CRBN-91	NM_016302	exon5	c.A533C	p.Q178P	GCTTGCTGGATTC	.	52	19	50	0	.	0	0	0	0	0
ACVR2B	93	broad.mit.edu	37	3	38519723	38519723	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	ACVR2B-942	NM_001106	exon4	c.G462A	p.L154L	CGTCCTGCTGGCC	.	142	4	106	0	.	1	1	0	0	0
KLHDC8B	200942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49212303	49212303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	KLHDC8B-90	NM_173546	exon4	c.G670A	p.V224I	GGCAGCGTCTTTA	.	58	31	63	0	.	17	9	8	0	0
CHRD	8646	bcgsc.ca	37	3	184106751	184106751	+	Missense_Mutation	SNP	G	G	A	rs200027250		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	CHRD-93	NM_003741	exon22	c.G2780A	p.R927Q	AGAGTCGATGCTG	.	86	4	80	0	G|0.999;A|0.000	25	25	0	0	0
MAML3	55534	hgsc.bcm.edu	37	4	140811102	140811102	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MAML3-455	NM_018717	exon2	c.G1488A	p.Q496Q	CTGCTGCTGCTGC	.	92	12	77	0	.	3314	3216	94	0	4
MAML3	55534	hgsc.bcm.edu	37	4	140811104	140811104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MAML3-455	NM_018717	exon2	c.C1486A	p.Q496K	GCTGCTGCTGCTG	.	93	10	79	0	.	2741	2727	2	10	2
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1219218	1219218	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	SLC6A19-90	NM_001003841	exon9	c.C1374T	p.L458L	GGTGCTCACAGGT	.	106	41	79	0	.	0	0	0	0	0
LYRM4	57128	hgsc.bcm.edu	37	6	5260906	5260906	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	LYRM4-90	NM_020408	exon1	c.A61T	p.K21X	AACGCTTGCTCTC	.	13	9	6	0	.	27	12	15	0	0
ABCF1	23	broad.mit.edu	37	6	30550906	30550906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	ABCF1-92	NM_001025091	exon10	c.G856A	p.V286M	TTCTCCGTGTCCC	.	125	3	140	0	.	22	22	0	0	0
TNRC18	84629	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5396874	5396874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	TNRC18-46	NM_001080495	exon16	c.C4867T	p.Q1623X	GCTCCTGGTCGCT	.	112	48	89	1	.	15	9	6	0	0
C7orf31	136895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	25182389	25182389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	C7orf31-90	NM_138811	exon8	c.A729C	p.K243N	AGGAGGTTTTGGG	.	89	38	81	0	.	1	0	1	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742605	156742605	+	Silent	SNP	A	A	G	rs149616380		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	NOM1-90	NM_138400	exon1	c.A174G	p.E58E	TTCGGAAGGCGAG	.	4	4	0	0	A|0.993;G|0.007	2	2	0	0	0
FAM214B	80256	ucsc.edu;bcgsc.ca	37	9	35106598	35106598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	.	NM_025182	exon5	c.C996A	p.S332R	GGGGGGGCTCAGC	.	37	4	45	0	.	9	9	0	0	0
C9orf153	389766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88844472	88844472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	C9orf153-90	NM_001276368	exon3	c.C47T	p.A16V	AGGGTGGCTTCTC	.	103	37	105	0	.	0	0	0	0	0
VCX	26609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	7811790	7811790	+	Silent	SNP	C	C	T	rs200229312		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	VCX-22	NM_013452	exon3	c.C354T	p.S118S	GGAGAGCGAGGTG	.	308	103	269	0	.	3	3	0	0	0
GAB3	139716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153908429	153908429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	GAB3-227	NM_001081573	exon9	c.T1627C	p.S543P	CTGGTGATGCTGA	.	149	57	145	0	.	0	0	0	0	0
MYPOP	339344	broad.mit.edu	37	19	46393972	46393972	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MYPOP-90	NM_001012643	exon3	c.1109delC	p.P370fs	GGGGCTGGGGGGG	.	7	2	8	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	.	.	147	57	141	0	.	0	0	0	0	0
EPHA6	285220	broad.mit.edu	37	3	96533514	96533514	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	EPHA6-1561	NM_001080448	exon1	c.47delA	p.Q16fs	CGCCGCAGGCAGC	.	6	3	8	0	.	0	0	0	0	0
GPR133	283383	hgsc.bcm.edu	37	12	131476916	131476917	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	GPR133-191	NM_198827	exon8	c.945_946insAC	p.Q315fs	.	.	91	28	70	0	.	0	0	0	0	0
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382384	24382385	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	.	NM_001136234	exon1	c.C1508T	.	CTGCTGCTGCTGC	.	324.0	25.0	244.0	0.0	.	0	0	0	0	0
