Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MECR	51102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	29557328	29557328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MECR-91	NM_016011	exon1	c.G91A	p.A31T	AGGAGGCGGCAGG	.	30	20	44	0	.	6	1	5	0	0
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36475164	36475164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	.	NM_024852	exon9	c.C1118T	p.A373V	GATCTGCACCAGA	.	254	99	309	0	.	1	0	1	0	0
INTS3	65123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153740253	153740253	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	INTS3-93	NM_023015	exon21	c.G2194T	p.E732X	TGCCAGGAGGACG	.	95	33	78	0	.	8	5	3	0	0
CFH	3075	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	196654324	196654324	+	Silent	SNP	A	A	G	rs1061147	byfrequency;alternate_allele	TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CFH-566	NM_001014975	exon7	c.A921G	p.A307A	TACAGCAAAATGC	.	239	84	292	0	A|0.353;C|0.647	1	1	0	0	0
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	198678922	198678922	+	Silent	SNP	C	C	T	rs200643724		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	PTPRC-295	NM_002838	exon11	c.C1140T	p.N380N	TACTAACGCAAGT	.	149	40	222	0	C|0.999;T|0.001	0	0	0	0	0
GPR37L1	9283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	202097357	202097357	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	GPR37L1-91	NM_004767	exon2	c.C1119T	p.L373L	CACCCTCCCAGAG	.	108	8	124	0	.	0	0	0	0	0
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211449723	211449723	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	RCOR3-91	NM_001136223	exon5	c.G479C	p.S160T	CCTTTAGTTTTCA	.	104	9	105	0	.	1	1	0	0	0
CENPF	1063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214815375	214815375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CENPF-567	NM_016343	exon12	c.G3694T	p.E1232X	GAGAAGGAGTGCC	.	118	33	187	1	.	0	0	0	0	0
CAPN2	824	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223959597	223959597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CAPN2-523	NM_001748	exon19	c.C1990G	p.R664G	TTTGTTCGGTGTT	.	215	62	215	1	.	220	104	116	0	0
SNAP47	116841	hgsc.bcm.edu;bcgsc.ca	37	1	227946738	227946738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SNAP47-91	NM_053052	exon3	c.C675A	p.S225R	CTTTAGCTCCAAG	.	73	4	91	0	.	26	26	0	0	0
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	243419490	243419490	+	Silent	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SDCCAG8-90	NM_006642	exon1	c.G15A	p.P5P	GTCCCCGGAGAAC	.	123	7	146	0	.	1	1	0	0	0
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	8007636	8007636	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TAF3-69	NM_031923	exon3	c.G2163C	p.K721N	GGAGAAGGAAAGA	.	82	21	66	0	.	5	3	2	0	0
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12139749	12139749	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DHTKD1-515	NM_018706	exon8	c.G1425C	p.E475D	GCAGGAGGAGGTG	.	125	53	116	0	.	6	3	3	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	154	5	142	2	.	1	1	0	0	0
NCOA4	8031	broad.mit.edu	37	10	51579175	51579175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	NCOA4-1042	NM_001145261	exon3	c.A82C	p.S28R	AGCTCCAGTAATA	.	64	7	67	3	.	6	6	0	0	0
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70182074	70182074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	.	NM_001080449	exon17	c.G2605A	p.E869K	CCAGTTCCAGCTT	.	167	58	156	0	.	0	0	0	0	0
HELLS	3070	bcgsc.ca	37	10	96305697	96305697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	HELLS-92	NM_018063	exon1	c.G19A	p.A7T	CGGCCCGCGGGCA	.	67	36	152	4	.	0	0	0	0	0
HPSE2	60495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	100481443	100481443	+	Silent	SNP	C	C	T	rs200916817		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	HPSE2-91	NM_001166246	exon5	c.G927A	p.P309P	CTTCCTCGGCCGC	.	64	7	59	0	C|0.999;T|0.001	0	0	0	0	0
ACADSB	36	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124800167	124800167	+	Silent	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ACADSB-92	NM_001609	exon4	c.G489A	p.L163L	CTATTTGCCTCAG	.	79	20	104	1	.	6	3	3	0	0
FRG2B	441581	broad.mit.edu	37	10	135439107	135439107	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	.	NM_001080998	exon4	c.G333A	p.G111G	ACAGTTCCCTGCA	.	109	3	135	0	.	0	0	0	0	0
CARNS1	57571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67186592	67186592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CARNS1-46	NM_001166222	exon5	c.G730C	p.G244R	CTGCGGGGAGGGG	.	37	20	46	0	.	0	0	0	0	0
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103006543	103006543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DYNC2H1-68	NM_001377	exon17	c.A2440G	p.K814E	CAGTTTAAGGGAG	.	52	26	67	1	.	0	0	0	0	0
C11orf53	341032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111156468	111156468	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	C11orf53-226	NM_198498	exon4	c.A400C	p.S134R	AGCACGAGTTGCC	.	50	16	101	0	.	0	0	0	0	0
TMPRSS13	84000	hgsc.bcm.edu;ucsc.edu	37	11	117789342	117789342	+	Missense_Mutation	SNP	T	T	C	rs75037497		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TMPRSS13-91	NM_001206790	exon2	c.A233G	p.Q78R	GATGCCTGGGCTG	.	52	7	73	0	T|0.500;C|0.500	0	0	0	0	0
TMPRSS13	84000	hgsc.bcm.edu;ucsc.edu	37	11	117789345	117789345	+	Missense_Mutation	SNP	G	G	C	rs61900347		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TMPRSS13-91	NM_001206790	exon2	c.C230G	p.A77G	GCCTGGGCTGGAG	.	49	6	75	0	G|0.899;C|0.101	0	0	0	0	0
FOXRED1	55572	broad.mit.edu	37	11	126146393	126146393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	FOXRED1-90	NM_017547	exon9	c.A1076G	p.Y359C	GCAACTACCTAGG	.	205	5	233	0	.	47	44	3	0	0
SLC6A13	6540	broad.mit.edu	37	12	347126	347126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SLC6A13-90	NM_016615	exon5	c.G529A	p.E177K	CATTCTCAGAGGT	.	220	6	225	0	.	66	65	1	0	0
TPI1	7167	broad.mit.edu;bcgsc.ca	37	12	6976718	6976718	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TPI1-226	NM_001159287	exon1	c.C99T	p.L33L	GCGCCTCGGCTCC	.	69	6	91	0	.	96	91	5	0	0
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	60921717	60921717	+	Splice_Site	SNP	A	A	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	C14orf39-94	NM_174978	exon17	c.1503+2T>A	.	CATATTACCTGAT	.	15	8	24	0	.	0	0	0	0	0
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29162089	29162089	+	Silent	SNP	T	T	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ATAD5-93	NM_024857	exon2	c.T990A	p.P330P	TCACCCTATTCCG	.	167	75	189	0	.	0	0	0	0	0
ORMDL3	94103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38078866	38078866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ORMDL3-68	NM_139280	exon4	c.C399G	p.S133R	AAGCACGCTCATC	.	141	29	159	0	.	83	47	36	0	0
CEP112	201134	ucsc.edu	37	17	63923752	63923752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CEP112-90	NM_001199165	exon19	c.C1928T	p.S643L	TCCTTTGATTGTT	.	34	4	23	0	.	5	5	0	0	0
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65110487	65110487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	HELZ-92	NM_014877	exon28	c.A3871C	p.I1291L	TATTAATTTCAGG	.	47	31	21	0	.	3	0	3	0	0
DSC3	1825	bcgsc.ca	37	18	28598133	28598133	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DSC3-94	NM_024423	exon9	c.G1167A	p.W389X	GACTCTCCAATTG	.	54	4	58	0	.	0	0	0	0	0
CREB3L3	84699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4171149	4171149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CREB3L3-92	NM_032607	exon8	c.G952T	p.A318S	AAGTCAGCCCAGA	.	115	42	147	0	.	0	0	0	0	0
OR7G3	390883	broad.mit.edu	37	19	9237432	9237432	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	OR7G3-69	NM_001001958	exon1	c.C195G	p.I65M	GGACAGGATAGAG	.	233	4	257	0	.	0	0	0	0	0
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44739325	44739325	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ZNF227-91	NM_182490	exon6	c.A742T	p.K248X	GGAGAGAAACCCC	.	73	29	99	0	.	1	1	0	0	0
C5AR1	728	broad.mit.edu	37	19	47823729	47823729	+	Missense_Mutation	SNP	G	G	A	rs201394213		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	C5AR1-93	.	.	.	.	GGAGCCGCAGGGC	.	146	4	149	0	.	4	4	0	0	0
SIGLEC5	8778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52131213	52131213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SIGLEC5-92	NM_003830	exon5	c.A871T	p.T291S	TGGGGGTGGCGTT	.	93	37	82	0	.	0	0	0	0	0
MOGS	7841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74688599	74688599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MOGS-90	NM_006302	exon4	c.G2317A	p.E773K	GACCCTCCAGATG	.	197	56	248	0	.	70	48	22	0	0
ACMSD	130013	hgsc.bcm.edu;broad.mit.edu	37	2	135621133	135621133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ACMSD-91	NM_138326	exon5	c.G418A	p.G140R	TTTCCCGGGGTCC	.	98	6	116	0	.	99	94	5	0	0
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182774650	182774650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SSFA2-153	NM_001130445	exon9	c.C1438G	p.P480A	GAAGCTCCTCATG	.	92	39	120	0	.	1	0	1	0	0
NCKAP1	10787	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	183792879	183792879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	NCKAP1-92	NM_205842	exon30	c.G3164A	p.G1055E	ATGCTTCCTTTGT	.	48	14	48	1	.	77	37	40	0	0
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35219589	35219589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TGIF2-92	NM_021809	exon3	c.C469A	p.L157M	AAGCCCCTGGTGA	.	53	30	89	0	.	2	1	1	0	0
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24583996	24583996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SUSD2-91	NM_019601	exon13	c.C2234A	p.S745Y	CGGGTTCCACCAT	.	357	138	472	0	.	3	2	1	0	0
RFPL1	5988	broad.mit.edu	37	22	29837996	29837996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	RFPL1-90	NM_021026	exon2	c.A839G	p.H280R	CACTGCACTTGTT	.	195	5	201	2	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	146	49	135	0	.	0	0	0	0	0
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37098581	37098581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CACNG2-90	NM_006078	exon1	c.C41A	p.T14N	CCAACGGTGGTTA	.	149	56	104	0	.	0	0	0	0	0
KCNH8	131096	broad.mit.edu;bcgsc.ca	37	3	19554559	19554559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	KCNH8-524	NM_144633	exon13	c.C2177T	p.S726F	CAGTCTCCCTCTC	.	265	13	248	0	.	0	0	0	0	0
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36874430	36874430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TRANK1-24	NM_014831	exon21	c.G6512A	p.R2171H	TCACAACGCCGCA	.	22	10	42	0	.	0	0	0	0	0
KLHDC8B	200942	ucsc.edu;bcgsc.ca	37	3	49212587	49212587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	KLHDC8B-90	NM_173546	exon5	c.G859A	p.G287R	GCCATTGGGGGCC	.	27	4	41	0	.	0	0	0	0	0
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	3	52439275	52439275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	BAP1-1032	NM_004656	exon11	c.G967T	p.A323S	ATGGGGCTTGTGC	.	84	65	99	0	.	0	0	0	0	0
COL8A1	1295	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	99514774	99514774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	COL8A1-90	NM_001850	exon5	c.G2029A	p.A677T	TGGGTTGCTCTAT	.	116	82	122	1	.	4	4	0	0	0
XRN1	54464	broad.mit.edu;bcgsc.ca	37	3	142030528	142030528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	XRN1-93	NM_019001	exon42	c.G4946A	p.S1649N	GATGAGCTCTCCC	.	101	8	129	1	.	0	0	0	0	0
CLDN11	5010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	170141043	170141043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CLDN11-90	NM_005602	exon2	c.C319T	p.R107W	TGCATCCGGATGG	.	174	15	210	0	.	1	1	0	0	0
MFN1	55669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179082985	179082985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MFN1-155	NM_033540	exon7	c.C725G	p.S242C	ATGCCTCTGCATC	.	86	66	120	0	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195510149	195510149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MUC4-90	NM_018406	exon2	c.C8302T	p.P2768S	GAAGAGGGGTGGC	.	555	24	467	12	.	0	0	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88536475	88536475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DSPP-90	NM_014208	exon5	c.A2661C	p.E887D	CAACGAAAGCAGC	.	356	45	321	0	.	0	0	0	0	0
FGG	2266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155526043	155526043	+	Silent	SNP	T	T	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	FGG-90	NM_021870	exon9	c.A1305G	p.R435R	CTCTGGTCTGACC	.	93	37	66	0	.	0	0	0	0	0
CDH18	1016	broad.mit.edu;bcgsc.ca	37	5	19612631	19612631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CDH18-159	NM_001167667	exon6	c.G723A	p.M241I	CCCAGCCATGTCT	.	209	7	207	0	.	0	0	0	0	0
AMACR	23600	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34004755	34004755	+	Missense_Mutation	SNP	A	A	G	rs147265006		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	AMACR-90	NM_014324	exon3	c.T476C	p.M159T	GCACACATAAGGC	.	398	148	519	2	A|0.999;G|0.000	13	7	6	0	0
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32052212	32052212	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TNXB-90	NM_019105	exon8	c.G3423A	p.P1141P	CACCAGCGGACCA	.	150	53	174	1	.	0	0	0	0	0
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	11675888	11675888	+	Silent	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	THSD7A-71	NM_015204	exon2	c.C891T	p.R297R	AAGCTCGCGGGCT	.	46	21	80	0	.	0	0	0	0	0
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100352929	100352929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ZAN-142	.	.	.	.	GGGCCCCTCTGTC	.	112	41	98	0	.	0	0	0	0	0
IMMP2L	83943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	111161447	111161447	+	Silent	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	IMMP2L-93	NM_032549	exon2	c.C57T	p.F19F	CACAAAGAAGCCT	.	58	17	86	0	.	14	8	6	0	0
KIAA1147	57189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141365048	141365048	+	Silent	SNP	A	A	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	KIAA1147-69	NM_001080392	exon6	c.T891A	p.P297P	GAAGAAAGGTTTG	.	190	65	250	0	.	7	4	3	0	0
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148496376	148496376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CUL1-226	NM_003592	exon21	c.G2146A	p.V716M	GCCATCGTGAGAA	.	114	42	181	0	.	0	0	0	0	0
DEFA6	1671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6783427	6783427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DEFA6-90	NM_001926	exon1	c.C131T	p.A44V	TCATTTGCCCCAC	.	65	25	101	0	.	0	0	0	0	0
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8655002	8655002	+	Splice_Site	SNP	C	C	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MFHAS1-90	NM_004225	exon3	c.2999-1G>T	.	ACTCCCCTGTAGG	.	116	47	120	0	.	0	0	0	0	0
PNMA2	10687	broad.mit.edu	37	8	26365721	26365721	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	PNMA2-90	NM_007257	exon3	c.G551A	p.W184X	TCCAACCAGACCT	.	91	3	100	0	.	2	2	0	0	0
ADAM9	8754	ucsc.edu	37	8	38871523	38871523	+	Silent	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ADAM9-227	NM_003816	exon4	c.C294T	p.N98N	TTACAACAAGGAA	.	34	4	45	0	.	2	2	0	0	0
ZC3H3	23144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144522452	144522452	+	Silent	SNP	G	G	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ZC3H3-91	NM_015117	exon11	c.C2574A	p.P858P	GCAGTGGGGAGGT	.	29	15	46	0	.	12	8	4	0	0
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135163729	135163729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SETX-93	NM_015046	exon17	c.T6218C	p.L2073S	GAAGGTAACTCTT	.	63	25	78	0	.	0	0	0	0	0
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu	37	X	34148936	34148936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	FAM47A-134	NM_203408	exon1	c.G1460A	p.R487Q	GACCTCCGACGTG	.	70	4	91	0	.	0	0	0	0	0
TMEM164	84187	bcgsc.ca	37	X	109352336	109352336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TMEM164-193	NM_032227	exon4	c.C469G	p.L157V	GGAGCTCTTCTGG	.	57	4	78	1	.	0	0	0	0	0
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104123472	104123472	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	GBF1-91	NM_001199378	exon17	c.2023delA	p.K675fs	.	.	69	19	76	0	.	0	0	0	0	0
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	21511115	21511115	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	LAMA3-100	NM_198129	exon65	c.8526delG	p.T2842fs	.	.	49	13	52	0	.	0	0	0	0	0
LAMA3	3909	hgsc.bcm.edu	37	18	21511115	21511118	+	Frame_Shift_Del	DEL	GTAT	GTAT	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	GTAT	GTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	LAMA3-100	NM_198129	exon65	c.8526_8529del	p.2842_2843del	.	.	54	14	51	0	.	0	0	0	0	0
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	21511118	21511118	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	LAMA3-100	NM_198129	exon65	c.8529delT	p.Y2843X	.	.	57	13	54	0	.	0	0	0	0	0
ZNF233	353355	hgsc.bcm.edu	37	19	44778797	44778797	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ZNF233-92	NM_001207005	exon5	c.1984delT	p.L662fs	.	.	56	20	61	0	.	0	0	0	0	0
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52439271	52439271	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	BAP1-1032	NM_004656	exon11	c.971delC	p.P324fs	.	.	81	60	100	0	.	0	0	0	0	0
PPWD1	23398	broad.mit.edu;bcgsc.ca	37	5	64867921	64867921	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	PPWD1-91	NM_015342	exon5	c.777delC	p.F259fs	TAAATTCCCCAAA	.	35	9	52	0	.	0	0	0	0	0
CCDC168	643677	broad.mit.edu;bcgsc.ca	37	13	103402101	103402102	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	.	NM_001146197	exon4	c.946_947insT	p.T316fs	GACTAGTAAATTG	.	26	9	30	0	.	0	0	0	0	0
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43052875	43052876	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	HNF4A-227	NM_178849	exon8	c.1110_1111insC	p.L370fs	.	.	148	50	185	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	280	0	394	0	.	0	0	0	0	0
