Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132349391	132349391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ACAD11	NM_032169	exon7	c.A853T	p.M285L	CTTCCATTGATGG	.	125.0	22.0	132.0	0.0	.	91
AKR1C3	8644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5144299	5144299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	AKR1C3	NM_003739	exon6	c.T577C	p.C193R	GTAGAATGTCATC	.	155.0	60.0	206.0	1.0	.	515
AMER1	139285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63413037	63413037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	.	NM_152424	exon2	c.C130T	p.P44S	AGGATGGCTCTGA	.	181.0	82.0	205.0	2.0	.	.
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131521437	131521437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	.	NM_152698	exon2	c.G1792A	p.D598N	TCCAGGGATGCCT	.	47.0	21.0	65.0	0.0	.	.
ARX	170302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	25033826	25033826	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ARX	NM_139058	exon1	c.G29C	p.C10S	TCGGAGCAGCCCT	.	361.0	83.0	341.0	0.0	.	130
ASB1	51665	ucsc.edu;bcgsc.ca	37	2	239353034	239353034	+	Silent	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ASB1	NM_001040445	exon4	c.T546C	p.P182P	CCAGCCTCGATTC	.	36.0	4.0	63.0	0.0	.	226
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31023622	31023622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ASXL1	NM_015338	exon12	c.A3107G	p.N1036S	AACCCAATTGGAA	.	49.0	21.0	53.0	0.0	.	2057
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70252291	70252291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	AUTS2	NM_015570	exon18	c.C2405T	p.S802L	CTCCGTCGTTCCC	.	73.0	31.0	81.0	0.0	.	92
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129159156	129159156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	BCORL1	NM_021946	exon6	c.C3880T	p.H1294Y	CGAAGGCACCTGT	.	109.0	35.0	134.0	1.0	.	294
C10orf137	26098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127426555	127426555	+	Silent	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	C10orf137	NM_001202438	exon14	c.A1827G	p.L609L	TGTTCTAGAGGTA	.	246.0	87.0	284.0	0.0	.	590
CA4	762	ucsc.edu;bcgsc.ca	37	17	58235786	58235786	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CA4	NM_000717	exon7	c.C723T	p.P241P	GGAGCCCATTCAG	.	33.0	4.0	22.0	0.0	.	226
CCDC155	147872	ucsc.edu;bcgsc.ca	37	19	49901246	49901246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CCDC155	NM_144688	exon7	c.A475G	p.T159A	CAAGCCACAGCTG	.	56.0	5.0	50.0	0.0	.	69
CCDC96	257236	ucsc.edu;bcgsc.ca	37	4	7043800	7043800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CCDC96	NM_153376	exon1	c.G866A	p.G289D	AGCATGCCCAGAT	.	48.0	4.0	62.0	0.0	.	90
CDCA7	83879	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174224139	174224139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CDCA7	NM_031942	exon3	c.G304A	p.E102K	ACTAACGAACTGG	.	210.0	64.0	177.0	1.0	.	91
CFH	3075	broad.mit.edu;bcgsc.ca	37	1	196716375	196716375	+	Missense_Mutation	SNP	C	C	T	rs121913059	bycluster	TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CFH	NM_000186	exon22	c.C3628T	p.R1210C	TCATCACGTTCTC	.	1208.0	52.0	816.0	1.0	C|1.000;T|0.000	566
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41410483	41410483	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CNTN1	NM_001843	exon19	c.2185-1G>A	.	TATTTAGCCTTTG	.	125.0	57.0	126.0	0.0	.	1149
CNTRL	11064	ucsc.edu;bcgsc.ca	37	9	123931905	123931905	+	Silent	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CNTRL	NM_007018	exon37	c.A6087G	p.E2029E	TTCAGAAAGGGAG	.	46.0	4.0	74.0	0.0	.	661
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238255185	238255185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	COL6A3	NM_004369	exon32	c.A7053G	p.I2351M	TCCAACTATCCCT	.	47.0	4.0	83.0	0.0	.	526
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113421218	113421218	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	CSMD3	NM_198123	exon33	c.T5439A	p.D1813E	AACAACATCGTGG	.	134.0	58.0	160.0	0.0	.	1132
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61528282	61528282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	DIDO1	NM_080797	exon7	c.C1655T	p.P552L	CCTGGAGGGGCTG	.	84.0	29.0	93.0	0.0	.	96
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7583427	7583427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	DSP	NM_004415	exon24	c.A5932G	p.M1978V	ACAGCAATGCAGC	.	126.0	56.0	132.0	1.0	.	518
DTNB	1838	bcgsc.ca;mdanderson.org	37	2	25611083	25611083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	DTNB	NM_021907	exon17	c.G1723A	p.A575T	CGAAGGCCTCCTG	.	22.0	12.0	33.0	1.0	.	137
E2F8	79733	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	19251120	19251120	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	E2F8	NM_024680	exon10	c.A1774T	p.K592X	GGCTCTTTGCCCC	.	141.0	63.0	190.0	1.0	.	91
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184911175	184911175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	EHHADH	NM_001966	exon7	c.C1011A	p.N337K	CATCTTGTTTGCA	.	108.0	33.0	166.0	0.0	.	93
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79403615	79403615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ELTD1	NM_022159	exon6	c.T637A	p.L213I	CAGATAACTTGTC	.	371.0	114.0	296.0	0.0	.	24
EYA2	2139	ucsc.edu;bcgsc.ca	37	20	45702937	45702937	+	Silent	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	EYA2	NM_172110	exon7	c.T624C	p.S208S	GGCATCTCACAAC	.	47.0	4.0	65.0	0.0	.	523
FAM182B	728882	bcgsc.ca;mdanderson.org	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	.	.	.	.	.	CTGCAGCCTTCCT	.	20.0	4.0	30.0	0.0	.	.
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	40360959	40360959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	FCGBP	NM_003890	exon33	c.G15449A	p.R5150H	AAACAGCGGGTGG	.	47.0	18.0	68.0	0.0	.	98
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40360958	40360958	+	Silent	SNP	G	G	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	FCGBP	NM_003890	exon33	c.C15450A	p.R5150R	AAAACAGCGGGTG	.	47.0	19.0	69.0	0.0	.	98
GCNT3	9245	ucsc.edu;bcgsc.ca	37	15	59911038	59911038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	GCNT3	NM_004751	exon3	c.T601C	p.S201P	TCCTGGTCCAGGG	.	48.0	4.0	50.0	0.0	.	91
GLT8D2	83468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104396997	104396997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	GLT8D2	NM_031302	exon5	c.C200T	p.A67V	ATGGCAGCCATAG	.	145.0	56.0	154.0	1.0	.	92
GPR12	2835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	27332981	27332981	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	GPR12	NM_005288	exon2	c.G984A	p.A328A	CGAGCGCGCTCTC	.	86.0	30.0	107.0	0.0	.	90
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13716219	13716219	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	GRIN2B	NM_000834	exon13	c.C3953G	p.A1318G	CGCGGGGCCAGGG	.	186.0	93.0	184.0	0.0	.	231
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31597908	31597908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	HECTD1	NM_015382	exon25	c.C4669T	p.R1557W	TAGTCCGTGCTAT	.	234.0	97.0	276.0	1.0	.	570
HIST1H2AG	8969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27101166	27101166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	HIST1H2AG	NM_021064	exon1	c.G316T	p.G106C	GCACAGGGCGGTG	.	134.0	53.0	186.0	0.0	.	68
HMGCLL1	54511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55360266	55360266	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	HMGCLL1	NM_019036	exon8	c.G836C	p.C279S	TCATGACAGTGAA	.	160.0	64.0	203.0	0.0	.	94
IBSP	3381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88732600	88732600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	IBSP	NM_004967	exon7	c.A492T	p.E164D	CGAAGAAAGCGAA	.	151.0	53.0	197.0	0.0	.	90
IDS	3423	ucsc.edu;bcgsc.ca	37	X	148578000	148578000	+	Silent	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	IDS	NM_006123	exon6	c.T756C	p.D252D	CTCGGGATCGGGG	.	52.0	5.0	58.0	0.0	.	130
IGF2BP1	10642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47117454	47117454	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	IGF2BP1	NM_006546	exon7	c.818+1G>A	.	CAAAACGTAAGTC	.	61.0	24.0	85.0	0.0	.	226
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57154328	57154328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	IL17RD	NM_017563	exon2	c.C140T	p.A47V	CTGCTGGCTGGCC	.	95.0	31.0	85.0	0.0	.	500
ITGA10	8515	hgsc.bcm.edu;mdanderson.org	37	1	145532146	145532146	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ITGA10	NM_003637	exon8	c.C790T	p.R264X	GGGGGCCGACCCG	.	62.0	14.0	51.0	0.0	.	231
KIDINS220	57498	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	8871250	8871250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	KIDINS220	NM_020738	exon30	c.T4916C	p.I1639T	GCTATAATTGGAT	.	98.0	48.0	146.0	2.0	.	93
KLK12	43849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	51535232	51535232	+	Silent	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	KLK12	NM_019598	exon4	c.C357T	p.R119R	GGTTACGCGGACG	.	32.0	15.0	15.0	0.0	.	227
KRTAP9-3	83900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39389083	39389083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	KRTAP9-3	NM_031962	exon1	c.T330A	p.S110R	CACAAGTGTTTGT	.	116.0	44.0	179.0	2.0	.	91
MAP1B	4131	ucsc.edu;bcgsc.ca	37	5	71499617	71499617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MAP1B	NM_005909	exon6	c.A7240G	p.S2414G	TGGGGCAGCAACA	.	44.0	4.0	68.0	0.0	.	155
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	44051811	44051811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MAPT	NM_005910	exon4	c.A281G	p.H94R	AGCCCCACACGGA	.	38.0	19.0	43.0	0.0	.	91
MED23	9439	ucsc.edu;bcgsc.ca	37	6	131946047	131946047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MED23	NM_015979	exon4	c.A242G	p.D81G	AAGCAGTCATAAA	.	48.0	4.0	55.0	0.0	.	24
MFN1	55669	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179103488	179103488	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MFN1	NM_033540	exon15	c.C1794T	p.G598G	TATGGGCATCATT	.	132.0	46.0	113.0	1.0	.	155
MIP	4284	ucsc.edu;bcgsc.ca	37	12	56845248	56845248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MIP	NM_012064	exon4	c.T608C	p.V203A	CAGTACACCTGTA	.	44.0	4.0	80.0	0.0	.	91
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36228046	36228046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MLL4	NM_014727	exon33	c.C7432A	p.Q2478K	GCCGAGCAGCTCC	.	28.0	9.0	47.0	0.0	.	697
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187455191	187455191	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MTNR1A	NM_005958	exon2	c.G705A	p.R235R	AAAATTCCTGAAG	.	192.0	47.0	162.0	0.0	.	524
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10404040	10404040	+	Silent	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MYH1	NM_005963	exon28	c.A3768G	p.L1256L	ATCTTCTAGAGCG	.	108.0	25.0	114.0	0.0	.	171
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26294307	26294307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	MYO18B,colon,carcinoma,-1	MYO18B	NM_032608	exon29	c.A4702G	p.K1568E	GGGGCCAAGAAGA	.	78.0	34.0	77.0	0.0	.	142
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59450529	59450529	+	Silent	SNP	A	A	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	MYO1E	NM_004998	exon25	c.T2835G	p.T945T	ATTTTGAGTCCCA	.	165.0	81.0	209.0	0.0	.	514
NBPF3	84224	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	21808194	21808194	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	NBPF3	NM_032264	exon13	c.G1538C	p.R513T	ATTCATGCCAGCC	.	385.0	84.0	502.0	0.0	.	92
NCAM2	4685	ucsc.edu;bcgsc.ca;mdanderson.org	37	21	22804446	22804446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	NCAM2	NM_004540	exon12	c.A1499C	p.Y500S	GTCCCTATGGAGT	.	197.0	65.0	216.0	2.0	.	94
NMB	4828	ucsc.edu;bcgsc.ca	37	15	85198626	85198626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	NMB	NM_205858	exon3	c.G340T	p.G114C	TTGTACCAGCAGC	.	43.0	4.0	100.0	1.0	.	90
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102335094	102335094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	NXF3	NM_022052	exon11	c.G978T	p.K326N	TAACCTCTTGTGG	.	88.0	37.0	76.0	0.0	.	205
PC	5091	ucsc.edu;bcgsc.ca	37	11	66633672	66633672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	PC	NM_000920	exon10	c.A1171G	p.T391A	GGCCGGTGTCCGG	.	36.0	5.0	42.0	1.0	.	228
PEBP1	5037	ucsc.edu;bcgsc.ca	37	12	118575893	118575893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	PEBP1	NM_002567	exon2	c.A185G	p.K62R	CAGGGAAGCTCTA	.	31.0	4.0	50.0	0.0	.	779
PGPEP1L	145814	ucsc.edu;bcgsc.ca	37	15	99512659	99512659	+	Silent	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	.	NM_001102612	exon4	c.A366G	p.A122A	CCTGCCTGCATCT	.	26.0	4.0	59.0	0.0	.	.
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130834407	130834407	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	PIWIL1	NM_004764	exon9	c.C939T	p.N313N	GTATAACAATAAG	.	66.0	33.0	101.0	0.0	.	92
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	121158902	121158903	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	POLQ	NM_199420	exon27	c.7325_7326del	p.2442_2442del	CAAAATGGTCTGA	.	61.0	23.0	65.0	0.0	.	664
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48856412	48856412	+	Splice_Site	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	PRKDC	NM_001081640	exon10	c.808+1G>T	.	ATCCTACCTGAGG	.	129.0	57.0	166.0	2.0	.	1515
QSER1	79832	broad.mit.edu;bcgsc.ca	37	11	32987853	32987853	+	Silent	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	QSER1	NM_001076786	exon9	c.A4590G	p.E1530E	ATTTGAACCTCCC	.	95.0	7.0	111.0	2.0	.	95
RAB18	22931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	27826828	27826828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RAB18	NM_001256410	exon8	c.G556A	p.G186S	TGTGATGGTGTAC	.	81.0	31.0	96.0	0.0	.	227
RASGRF2	5924	ucsc.edu;bcgsc.ca	37	5	80503111	80503111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RASGRF2	NM_006909	exon21	c.A3014G	p.E1005G	CCATGGAGCTGGC	.	52.0	4.0	56.0	0.0	.	725
RBMS2	5939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56975266	56975266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RBMS2	NM_002898	exon7	c.C706T	p.R236W	AATGGACGGGCTT	.	45.0	21.0	39.0	0.0	.	90
RNASEL	6041	hgsc.bcm.edu;broad.mit.edu	37	1	182551358	182551360	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RNASEL	NM_021133	exon4	c.1600_1602del	p.534_534del	GCTTCCCTTCTTT	.	223.0	15.0	144.0	0.0	.	336
RTN1	6252	broad.mit.edu;bcgsc.ca	37	14	60194386	60194386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RTN1	NM_021136	exon3	c.A1016G	p.E339G	GATGGTTCTGTCG	.	74.0	6.0	68.0	0.0	.	516
RTP1	132112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	186917604	186917604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	RTP1	NM_153708	exon2	c.C538T	p.R180C	GCCAGCCGCCAGG	.	32.0	18.0	29.0	0.0	.	155
SEMA5B	54437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122662337	122662337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SEMA5B	NM_001256347	exon4	c.A536T	p.D179V	GAGAAATCCCGGG	.	26.0	14.0	46.0	0.0	.	157
SERINC2	347735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31907019	31907019	+	Silent	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SERINC2	NM_001199038	exon11	c.C1368A	p.L456L	CCCACTCCTCCTG	.	35.0	30.0	54.0	0.0	.	90
SLC24A6	80024	ucsc.edu;bcgsc.ca	37	12	113758428	113758428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SLC24A6	NM_024959	exon6	c.T484C	p.S162P	GGTCAGAGAAGGC	.	44.0	4.0	38.0	0.0	.	90
SLC5A7	60482	bcgsc.ca;mdanderson.org	37	2	108627264	108627264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SLC5A7	NM_021815	exon9	c.C1690A	p.L564I	GCCTTCCTTGATG	.	16.0	3.0	29.0	0.0	.	93
SLC6A2	6530	ucsc.edu;bcgsc.ca	37	16	55731912	55731912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SLC6A2	NM_001172501	exon10	c.T1364C	p.L455P	CTTTCCTTCTCGC	.	44.0	4.0	78.0	0.0	.	526
SLC8A3	6547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70633754	70633754	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SLC8A3	NM_183002	exon2	c.G1386A	p.K462K	GAACTCCTTCTGG	.	18.0	7.0	32.0	0.0	.	225
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152651593	152651593	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SYNE1	NM_182961	exon78	c.A14227C	p.T4743P	GACCTGTGCTGCG	.	49.0	25.0	69.0	0.0	.	607
SYT15	83849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	46968625	46968625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	SYT15	NM_031912	exon3	c.G311T	p.C104F	GCCGGGCAGGGGT	.	27.0	5.0	22.0	0.0	.	22
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu	37	2	85536399	85536400	+	In_Frame_Ins	INS	-	-	GCA	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TCF7L1	NM_031283	exon12	c.1581_1582insGCA	p.A527delinsAA	TAAGGCTGCAGCC	.	66.0	19.0	71.0	0.0	.	585
TGOLN2	10618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85552051	85552051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TGOLN2	NM_001206841	exon3	c.G1295A	p.R432H	TCCAAACGTTGGT	.	114.0	35.0	99.0	0.0	.	22
TMEM260	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57083918	57083918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	.	NM_017799	exon9	c.C959T	p.S320L	ATCCATCATTAGT	.	167.0	56.0	186.0	2.0	.	.
TMEM92	162461	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48351885	48351885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TMEM92	NM_153229	exon1	c.G23A	p.G8D	TCCCCGGCCTCGC	.	34.0	10.0	22.0	0.0	.	90
TOPBP1	11073	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133339026	133339026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TOPBP1	NM_007027	exon20	c.G3344T	p.G1115V	CTTCGTCCACTGC	.	71.0	28.0	105.0	1.0	.	540
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	rs121912651	bycluster	TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	TP53,head_neck,carcinoma,+1	TP53	NM_000546	exon7	c.C742T	p.R248W	GCCTCCGGTTCAT	.	46.0	31.0	114.0	1.0	.	70225
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	224002032	224002032	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TP53BP2	NM_001031685	exon3	c.C199T	p.R67X	ACATTCGCTCATT	.	60.0	9.0	30.0	0.0	.	229
TPPP3	51673	ucsc.edu;bcgsc.ca	37	16	67424851	67424851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TPPP3	NM_016140	exon3	c.T164C	p.V55A	ATGTCCACATCGG	.	32.0	4.0	55.0	1.0	.	90
TWISTNB	221830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	19738145	19738145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	TWISTNB	NM_001002926	exon4	c.T811C	p.W271R	CCTCCCAGATGCC	.	158.0	59.0	192.0	0.0	.	91
USP15	9958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	62775287	62775287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	USP15	NM_001252078	exon9	c.C932T	p.P311L	ACACACCTCCACT	.	71.0	31.0	79.0	0.0	.	1084
VPS26B	112936	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134113163	134113163	+	Silent	SNP	G	G	A	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	VPS26B	NM_052875	exon4	c.G696A	p.E232E	GTACGAGATCATG	.	52.0	21.0	87.0	1.0	.	90
ZNF208	7757	hgsc.bcm.edu;bcgsc.ca	37	19	22171610	22171610	+	Silent	SNP	C	C	T	rs201303510		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ZNF208	NM_007153	exon2	c.G105A	p.E35E	GTAGTTCTCTAAC	.	155.0	14.0	179.0	0.0	.	7
ZNF350	59348	broad.mit.edu;bcgsc.ca	37	19	52469455	52469455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ZNF350	NM_021632	exon5	c.T251C	p.V84A	TGATCAACTTTCC	.	89.0	5.0	113.0	0.0	.	227
ZNF490	57474	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12721447	12721447	+	Silent	SNP	C	C	T	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ZNF490	NM_020714	exon1	c.G48A	p.E16E	TTGCTCCTCGAGG	.	27.0	7.0	38.0	0.0	.	90
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22364341	22364341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A216-01A-11D-A152-10	TCGA-BC-A216-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c1d9ed06-7498-4c6c-a0de-dbf28e868109	baf0c971-0005-4e18-bfdf-a2d71a3aff12	.	ZNF676	NM_001001411	exon3	c.G178C	p.E60Q	AATCTTCTATGCC	.	115.0	54.0	122.0	0.0	.	90
