Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACADM	34	hgsc.bcm.edu;bcgsc.ca	37	1	76216192	76216192	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACADM	NM_001127328	exon10	c.T918C	p.Y306Y	CAAGTATGCCCTG	.	86.0	4.0	75.0	0.0	.	155
AKAP4	8852	hgsc.bcm.edu;bcgsc.ca	37	X	49958534	49958534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AKAP4	NM_003886	exon5	c.A830G	p.E277G	ACAGCTTCATAGG	.	65.0	4.0	46.0	0.0	.	540
AKAP8	10270	hgsc.bcm.edu;bcgsc.ca	37	19	15484733	15484733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AKAP8	NM_005858	exon4	c.T235C	p.S79P	CGTAAGAGGCCAT	.	97.0	5.0	104.0	0.0	.	290
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89341222	89341227	+	In_Frame_Del	DEL	CTGGCT	CTGGCT	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	CTGGCT	CTGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANKRD11	NM_001256183	exon11	c.7708_7713del	p.2570_2571del	CCCTACCTGGCTC	.	70.0	18.0	90.0	0.0	.	139
ANO4	121601	hgsc.bcm.edu;bcgsc.ca	37	12	101333217	101333217	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANO4	NM_178826	exon3	c.A180G	p.E60E	ATTGGAAGCCGGG	.	63.0	4.0	110.0	0.0	.	96
AP2A2	161	ucsc.edu;bcgsc.ca	37	11	993286	993286	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AP2A2	NM_001242837	exon12	c.T1458C	p.A486A	GCAGGCTCTTCAG	.	30.0	4.0	57.0	0.0	.	90
ARFIP2	23647	hgsc.bcm.edu;bcgsc.ca	37	11	6501574	6501574	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARFIP2	NM_012402	exon2	c.T78C	p.P26P	ATCTTCAGGAAGC	.	70.0	4.0	132.0	0.0	.	90
ARHGAP17	55114	hgsc.bcm.edu;bcgsc.ca	37	16	24958829	24958829	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARHGAP17	NM_001006634	exon14	c.T1215C	p.P405P	CAAGTTAGGGCCT	.	68.0	4.0	64.0	0.0	.	227
ARHGAP36	158763	hgsc.bcm.edu;bcgsc.ca	37	X	130220617	130220617	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARHGAP36	NM_144967	exon11	c.T1464C	p.A488A	CCTTGCTCAAAGC	.	78.0	4.0	61.0	0.0	.	133
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46246364	46246376	+	Frame_Shift_Del	DEL	TCCCGACTCAGGA	TCCCGACTCAGGA	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	TCCCGACTCAGGA	TCCCGACTCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARID2	NM_152641	exon15	c.4458_4470del	p.1486_1490del	AGCAGTTCCCGAC	.	81.0	23.0	210.0	0.0	.	100
ASB13	79754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5691033	5691033	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ASB13	NM_024701	exon4	c.C417T	p.V139V	GGCCCCGACGTCA	.	105.0	61.0	98.0	0.0	.	227
ATAD1	84896	hgsc.bcm.edu;bcgsc.ca	37	10	89544340	89544340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATAD1	NM_032810	exon5	c.T470C	p.L157P	GGCTGAAGGTTAA	.	89.0	5.0	108.0	0.0	.	578
ATP13A4	84239	ucsc.edu;bcgsc.ca	37	3	193151700	193151700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATP13A4	NM_032279	exon25	c.A2776G	p.N926D	GGCTGTTTGTCTC	.	28.0	4.0	30.0	0.0	.	92
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79414423	79414423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BAHCC1	.	.	.	.	GGCTCATTCTACT	.	50.0	13.0	95.0	0.0	.	23
BBS9	27241	hgsc.bcm.edu;bcgsc.ca	37	7	33217138	33217138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BBS9	NM_014451	exon5	c.T377C	p.M126T	AATTGATGTATGA	.	70.0	4.0	64.0	0.0	.	230
BCL2	596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60795978	60795978	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BCL2	NM_000633	exon3	c.A600G	p.E200E	GTACAGTTCCACA	.	119.0	42.0	132.0	0.0	.	1271
BRSK1	84446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55816894	55816894	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BRSK1	NM_032430	exon16	c.C1830T	p.L610L	ATTCCTCGTGCTA	.	185.0	59.0	182.0	1.0	.	759
C15orf55	256646	hgsc.bcm.edu;bcgsc.ca	37	15	34646648	34646648	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C15orf55	NM_175741	exon5	c.G993A	p.V331V	CTTAGTGTACATT	.	68.0	4.0	160.0	0.0	.	206
C16orf88	400506	hgsc.bcm.edu;bcgsc.ca	37	16	19725915	19725915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C16orf88	NM_001012991	exon2	c.T443C	p.L148P	TTTTTGAGCTTCT	.	68.0	4.0	95.0	0.0	.	68
C1QTNF8	390664	hgsc.bcm.edu;bcgsc.ca	37	16	1143730	1143730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C1QTNF8	NM_207419	exon4	c.A530G	p.E177G	TAGGTCTCCTTGT	.	70.0	4.0	66.0	0.0	.	91
CAPN10	11132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241534647	241534647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CAPN10	NM_023085	exon7	c.G1204T	p.D402Y	GTGGGTGACAGTC	.	293.0	72.0	222.0	0.0	.	656
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37902375	37902375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CARD10	NM_014550	exon7	c.G1207T	p.D403Y	TCCGGTCACGGCT	.	230.0	68.0	207.0	0.0	.	662
CCDC136	64753	hgsc.bcm.edu;bcgsc.ca	37	7	128452197	128452197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC136	NM_022742	exon13	c.A2372G	p.D791G	GCTATGACAGCAG	.	103.0	5.0	110.0	0.0	.	24
CCDC30	728621	hgsc.bcm.edu;bcgsc.ca	37	1	43076653	43076653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC30	NM_001080850	exon10	c.T1388C	p.V463A	AGCATGTCAAAAG	.	65.0	4.0	82.0	0.0	.	90
CCDC62	84660	hgsc.bcm.edu;bcgsc.ca	37	12	123285708	123285708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC62	NM_201435	exon9	c.C1015T	p.P339S	AACCACCCAAAAG	.	81.0	4.0	124.0	0.0	.	157
CCNJ	54619	hgsc.bcm.edu;bcgsc.ca	37	10	97816897	97816897	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCNJ	NM_001134375	exon5	c.T633C	p.A211A	TGTGGCTTCTTCG	.	133.0	6.0	293.0	0.0	.	91
CDH16	1014	hgsc.bcm.edu;bcgsc.ca	37	16	66946026	66946026	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDH16	NM_004062	exon13	c.A1566G	p.A522A	TGGAGCTGCCTCA	.	75.0	4.0	96.0	0.0	.	93
CDH6	1004	hgsc.bcm.edu;bcgsc.ca	37	5	31305284	31305284	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDH6	NM_004932	exon7	c.T1003C	p.L335L	AAGCTCTTGGACT	.	54.0	5.0	61.0	0.0	.	159
CENPT	80152	hgsc.bcm.edu;bcgsc.ca	37	16	67864301	67864301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CENPT	NM_025082	exon11	c.A854G	p.Q285R	TTCTTCTGCAGCC	.	94.0	6.0	119.0	0.0	.	90
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120241020	120241020	+	Missense_Mutation	SNP	C	C	G	rs145965687	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CIT	NM_001206999	exon10	c.G1285C	p.G429R	ATCTACCAAGAAT	.	77.0	53.0	112.0	0.0	C|0.999;T|0.000	399
CNTN3	5067	hgsc.bcm.edu;bcgsc.ca	37	3	74418520	74418520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CNTN3	NM_020872	exon7	c.A766G	p.I256V	GAGGTATGGGACT	.	81.0	4.0	184.0	0.0	.	137
COL4A4	1286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227922184	227922184	+	Missense_Mutation	SNP	G	G	A	rs199562472		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	COL4A4	NM_000092	exon29	c.C2516T	p.P839L	AGTCCCGGTTGCC	.	75.0	23.0	61.0	1.0	G|0.999;A|0.001	142
CORIN	10699	hgsc.bcm.edu;bcgsc.ca	37	4	47685795	47685795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CORIN	NM_006587	exon7	c.G974A	p.C325Y	CCATCACACACAA	.	67.0	4.0	60.0	0.0	.	91
DAO	1610	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	109288138	109288138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DAO	NM_001917	exon7	c.A607G	p.M203V	CAGATCATGAAGG	.	44.0	4.0	83.0	0.0	.	92
DCBLD1	285761	hgsc.bcm.edu;bcgsc.ca	37	6	117861869	117861869	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCBLD1	NM_173674	exon10	c.A1140G	p.Q380Q	AGTGCAAAACAAT	.	95.0	4.0	131.0	0.0	.	91
DGKI	9162	hgsc.bcm.edu;bcgsc.ca	37	7	137374712	137374712	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DGKI	NM_004717	exon2	c.T438C	p.A146A	TGCAGGAGCCAGA	.	87.0	5.0	75.0	0.0	.	228
DLST	1743	hgsc.bcm.edu;bcgsc.ca	37	14	75365074	75365074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DLST	NM_001933	exon11	c.A773G	p.N258S	ACAGTAACATCCA	.	92.0	4.0	140.0	0.0	.	227
DMBX1	127343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46976674	46976674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMBX1	NM_147192	exon3	c.A416G	p.Q139R	AGCTCCAGAAGCA	.	117.0	43.0	124.0	0.0	.	227
DMXL2	23312	hgsc.bcm.edu;bcgsc.ca	37	15	51748508	51748508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMXL2	NM_001174116	exon37	c.A8333G	p.Y2778C	TTACAGTATTGAT	.	99.0	4.0	197.0	0.0	.	99
DNAH7	56171	hgsc.bcm.edu;bcgsc.ca	37	2	196750895	196750895	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAH7	NM_018897	exon34	c.A5508G	p.R1836R	ATCATTTCTCTCC	.	100.0	4.0	58.0	0.0	.	102
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7580098	7580098	+	Silent	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DSP	NM_004415	exon23	c.C3675G	p.S1225S	GATATCCATGCAA	.	91.0	39.0	116.0	0.0	.	518
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103018563	103018563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DYNC2H1	NM_001377	exon19	c.T2765C	p.L922P	ATGATCTCATCCA	.	64.0	4.0	41.0	0.0	.	68
EFEMP1	2202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	56145028	56145028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EFEMP1	NM_001039349	exon4	c.G289A	p.A97T	TGGTTGCCCCTGA	.	199.0	78.0	217.0	0.0	.	520
EIF5	1983	hgsc.bcm.edu;bcgsc.ca	37	14	103803078	103803078	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EIF5	NM_001969	exon5	c.T219C	p.R73R	TGACCGTTACATT	.	80.0	4.0	97.0	0.0	.	155
EYS	346007	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	64498005	64498005	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EYS	NM_001142800	exon39	c.T7716C	p.G2572G	TTGAAAACCATTT	.	56.0	5.0	58.0	0.0	.	660
F10	2159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	113803258	113803258	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	F10	NM_000504	exon8	c.C894T	p.G298G	GGAGGGCGGTGAG	.	420.0	26.0	361.0	0.0	.	227
FAM120C	54954	hgsc.bcm.edu;bcgsc.ca	37	X	54162988	54162988	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM120C	NM_017848	exon5	c.A1194G	p.K398K	AACTGCTTTCTTG	.	75.0	4.0	76.0	0.0	.	131
FAM208A	23272	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	56667646	56667646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001112736	exon18	c.T3173C	p.M1058T	CGTTTCATCTTCT	.	26.0	4.0	38.0	0.0	.	.
FAM3B	54097	hgsc.bcm.edu;bcgsc.ca	37	21	42720630	42720630	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM3B	NM_058186	exon7	c.T597C	p.P199P	ACTCCCTTCCGAA	.	96.0	4.0	150.0	0.0	.	90
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33874568	33874568	+	Missense_Mutation	SNP	G	G	A	rs138265873	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM83C	NM_178468	exon4	c.C2014T	p.R672W	TTAGCCGTTTCTC	.	206.0	62.0	222.0	0.0	G|1.000;A|0.000	92
FANK1	92565	hgsc.bcm.edu;bcgsc.ca	37	10	127697829	127697829	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FANK1	NM_145235	exon10	c.C966T	p.D322D	TTTTGACAGACAG	.	58.0	5.0	106.0	0.0	.	91
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99038053	99038053	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FARP1	NM_005766	exon8	c.A744T	p.G248G	CACGGGAATTCTA	.	39.0	20.0	25.0	0.0	.	290
FBXL5	26234	hgsc.bcm.edu;bcgsc.ca	37	4	15629615	15629615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FBXL5	NM_012161	exon7	c.A934G	p.M312V	TTTCCATTTGTGC	.	82.0	4.0	86.0	0.0	.	226
FIP1L1	81608	hgsc.bcm.edu;bcgsc.ca	37	4	54265931	54265931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FIP1L1	NM_030917	exon10	c.A740G	p.E247G	AGAAAGAAACTGC	.	87.0	5.0	109.0	0.0	.	1083
FRYL	285527	hgsc.bcm.edu;bcgsc.ca	37	4	48545872	48545872	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FRYL	NM_015030	exon44	c.T5544C	p.V1848V	GGAGAGAACATCA	.	90.0	4.0	68.0	0.0	.	69
FYCO1	79443	hgsc.bcm.edu;bcgsc.ca	37	3	46021198	46021198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FYCO1	NM_024513	exon4	c.A287G	p.E96G	CTTACCTCTGAGA	.	125.0	5.0	210.0	0.0	.	91
GBP5	115362	hgsc.bcm.edu;bcgsc.ca	37	1	89728392	89728392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GBP5	NM_052942	exon10	c.T1439C	p.L480P	TCTGTGAGAGCCT	.	75.0	4.0	102.0	0.0	.	91
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40343211	40343211	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GHDC	NM_001142623	exon6	c.C907G	p.L303V	GCTGTAGGTTTAG	.	72.0	34.0	71.0	0.0	.	90
GPAM	57678	hgsc.bcm.edu;bcgsc.ca	37	10	113940243	113940243	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPAM	NM_020918	exon4	c.T213C	p.T71T	CTGGGGAGTGCAG	.	47.0	4.0	92.0	0.0	.	92
GPRASP1	9737	hgsc.bcm.edu;bcgsc.ca	37	X	101912553	101912553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPRASP1	NM_001099411	exon3	c.T3712C	p.C1238R	TACATATGTAAAG	.	76.0	4.0	57.0	0.0	.	131
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101909698	101909698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPRASP1	NM_001099411	exon3	c.G857T	p.R286M	GGTTTAGGTCTAA	.	80.0	66.0	76.0	0.0	.	131
GSTCD	79807	hgsc.bcm.edu;bcgsc.ca	37	4	106650634	106650634	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GSTCD	NM_001031720	exon5	c.T1218C	p.P406P	TCTCCCTGCAGCA	.	95.0	4.0	96.0	0.0	.	92
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105244550	105244550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HACE1	NM_020771	exon9	c.G796A	p.E266K	GGTCTTCATTCTG	.	44.0	23.0	114.0	0.0	.	663
HDDC2	51020	hgsc.bcm.edu;bcgsc.ca	37	6	125619942	125619942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HDDC2	NM_016063	exon3	c.T227C	p.V76A	TCATGAACCAGGG	.	89.0	4.0	131.0	0.0	.	90
HERC2	8924	ucsc.edu;bcgsc.ca	37	15	28427625	28427625	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HERC2	NM_004667	exon57	c.A8859G	p.S2953S	AGCTGCTGATTCC	.	44.0	4.0	64.0	0.0	.	234
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15746539	15746539	+	Missense_Mutation	SNP	T	T	C	rs200321727		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HSPA13	NM_006948	exon5	c.A815G	p.Y272C	GTTTGATAGATCT	.	37.0	11.0	38.0	0.0	T|0.999;C|0.000	226
IDE	3416	hgsc.bcm.edu;bcgsc.ca	37	10	94274762	94274762	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IDE	NM_004969	exon5	c.A699G	p.E233E	AATGCCTTCTTGG	.	64.0	4.0	108.0	0.0	.	92
IGSF21	84966	hgsc.bcm.edu;bcgsc.ca	37	1	18691796	18691796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IGSF21	NM_032880	exon6	c.A620G	p.Q207R	CCCTACAGGACAG	.	68.0	4.0	135.0	0.0	.	156
IL1RAPL2	26280	hgsc.bcm.edu;bcgsc.ca	37	X	104478544	104478544	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IL1RAPL2	NM_017416	exon4	c.T399C	p.V133V	GACTGTTGCAGAG	.	66.0	4.0	64.0	0.0	.	194
IQCH	64799	hgsc.bcm.edu;bcgsc.ca	37	15	67553702	67553702	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IQCH	NM_022784	exon2	c.A144G	p.T48T	TGAAACAGCAATC	.	57.0	4.0	81.0	0.0	.	94
ITIH3	3699	broad.mit.edu;bcgsc.ca	37	3	52842646	52842646	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ITIH3	NM_002217	exon22	c.A2622G	p.E874E	CGGAGAAGGGCTG	.	142.0	6.0	202.0	1.0	.	93
KAT6B	23522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76790247	76790247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_012330	exon18	c.A5665G	p.M1889V	CCTCCAATGAATC	.	216.0	73.0	106.0	0.0	.	.
KIF16B	55614	hgsc.bcm.edu;bcgsc.ca	37	20	16360047	16360047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIF16B	NM_001199865	exon19	c.A2600G	p.E867G	TCATGTTCACATT	.	82.0	4.0	74.0	0.0	.	291
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126071499	126071499	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLF15	NM_014079	exon2	c.C267T	p.G89G	GCCCCCGCCACTG	.	130.0	60.0	64.0	0.0	.	91
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136963985	136963985	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLHL3	NM_017415	exon14	c.1591+1G>T	.	TCATTACCTGCGT	.	93.0	42.0	99.0	0.0	.	90
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62936570	62936570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LPHN3	NM_015236	exon23	c.G4354A	p.G1452R	AAAGATGGGACCC	.	83.0	32.0	90.0	0.0	.	508
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141092035	141092035	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRP1B	NM_018557	exon79	c.A12210G	p.L4070L	TCTCTGTAAGTTC	.	252.0	94.0	288.0	0.0	.	311
LRTOMT	220074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71819858	71819858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRTOMT	NM_001145308	exon7	c.C763A	p.Q255K	TTCTTGCAGTATG	.	125.0	45.0	108.0	0.0	.	68
MAGEB10	139422	hgsc.bcm.edu;bcgsc.ca	37	X	27839847	27839847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAGEB10	NM_182506	exon3	c.A424G	p.T142A	AATGTAACCCAAA	.	84.0	4.0	113.0	0.0	.	130
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	98943556	98943556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MATN2	NM_002380	exon3	c.C518G	p.P173R	GGAGACCTCAGGA	.	95.0	18.0	73.0	0.0	.	24
MTHFD2L	441024	hgsc.bcm.edu;bcgsc.ca	37	4	75023925	75023925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MTHFD2L	NM_001144978	exon1	c.A70G	p.S24G	GGCAGAAGCACAG	.	101.0	5.0	36.0	0.0	.	91
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9020072	9020072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MUC16	NM_024690	exon21	c.C37423T	p.R12475W	ACAGCCGCTCTCT	.	247.0	90.0	220.0	0.0	.	566
NAF1	92345	hgsc.bcm.edu;bcgsc.ca	37	4	164058390	164058390	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NAF1	NM_138386	exon6	c.A891G	p.S297S	TGCATCTGATCCC	.	69.0	4.0	144.0	0.0	.	70
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124824953	124824953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NCOR2	NM_006312	exon38	c.C5375T	p.S1792F	GACGAGGACGTGG	.	51.0	4.0	90.0	0.0	.	229
NEDD4	4734	hgsc.bcm.edu;bcgsc.ca	37	15	56207944	56207944	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NEDD4	NM_198400	exon1	c.A1086G	p.R362R	AGTCTGTCTGGGA	.	59.0	4.0	67.0	0.0	.	723
NHSL1	57224	hgsc.bcm.edu;bcgsc.ca	37	6	138753581	138753581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NHSL1	NM_020464	exon5	c.A1913G	p.H638R	ACGCTGTGCCTGG	.	75.0	4.0	128.0	0.0	.	68
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	120458918	120458919	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NOTCH2	NM_024408	exon34	c.6427_6428insTT	p.E2143fs	AACTCTCAGACAG	.	216.0	49.0	217.0	0.0	.	1441
NUP85	79902	hgsc.bcm.edu;bcgsc.ca	37	17	73214301	73214301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NUP85	NM_024844	exon7	c.T497C	p.L166P	TCCATCTCCTTGA	.	110.0	6.0	115.0	0.0	.	205
NYNRIN	57523	hgsc.bcm.edu;bcgsc.ca	37	14	24885708	24885708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NYNRIN	NM_025081	exon9	c.A4753G	p.S1585G	TGCAGGAGCTGCT	.	55.0	4.0	83.0	0.0	.	3
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24884365	24884365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NYNRIN	NM_025081	exon9	c.C3410T	p.A1137V	AGGAGGCCTTCCT	.	15.0	12.0	36.0	0.0	.	3
OCRL	4952	hgsc.bcm.edu;bcgsc.ca	37	X	128695175	128695175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OCRL	NM_000276	exon10	c.A844G	p.S282G	GACTTGAGCACAG	.	112.0	5.0	111.0	0.0	.	206
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161989875	161989875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OLFML2B	NM_015441	exon2	c.G272T	p.R91M	TTGATCCTCTGGC	.	223.0	49.0	127.0	0.0	.	69
OVOL2	58495	hgsc.bcm.edu;bcgsc.ca	37	20	18022238	18022238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OVOL2	NM_021220	exon3	c.T451C	p.F151L	CGCAGAAGGTGCA	.	123.0	5.0	114.0	0.0	.	68
PCLO	27445	hgsc.bcm.edu;bcgsc.ca	37	7	82580361	82580361	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PCLO	NM_014510	exon6	c.T9543C	p.V3181V	AGTGGGAACAGAG	.	100.0	4.0	90.0	0.0	.	29
PHLPP2	23035	hgsc.bcm.edu;bcgsc.ca	37	16	71683278	71683278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PHLPP2	NM_015020	exon18	c.A3487G	p.S1163G	CCTTGCTGCCATT	.	69.0	4.0	72.0	0.0	.	91
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204401382	204401382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIK3C2B	NM_002646	exon28	c.C4101G	p.I1367M	ATCACTGATTCGG	.	360.0	81.0	184.0	0.0	.	1310
PIK3R4	30849	hgsc.bcm.edu;bcgsc.ca	37	3	130449233	130449233	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIK3R4	NM_014602	exon5	c.T1504C	p.L502L	TTTTTAACTGTAC	.	86.0	4.0	85.0	0.0	.	1471
PLEKHA4	57664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49357343	49357343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLEKHA4	NM_020904	exon11	c.C1097T	p.T366M	AGCAGCGTCTGGA	.	121.0	59.0	106.0	0.0	.	227
PLXNC1	10154	hgsc.bcm.edu;bcgsc.ca	37	12	94631455	94631455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLXNC1	NM_005761	exon10	c.T1996C	p.S666P	ATTAAGTCCATTG	.	55.0	4.0	71.0	0.0	.	92
POLE2	5427	hgsc.bcm.edu;bcgsc.ca	37	14	50118040	50118040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	POLE2	NM_001197331	exon16	c.A1267G	p.M423V	TGCACATTTTATT	.	83.0	4.0	159.0	0.0	.	229
PPP1R12A	4659	hgsc.bcm.edu;bcgsc.ca	37	12	80266678	80266678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPP1R12A	NM_002480	exon2	c.T278C	p.V93A	TTTTCTACCAGAA	.	74.0	4.0	122.0	0.0	.	273
PPP1R13B	23368	hgsc.bcm.edu;bcgsc.ca	37	14	104206859	104206859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPP1R13B	NM_015316	exon12	c.T1894C	p.S632P	CCGTGGACAGTGA	.	75.0	5.0	114.0	0.0	.	227
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93611837	93611837	+	Silent	SNP	A	A	G	rs199469491	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PROS1	NM_000313	exon10	c.T1095C	p.N365N	ATGTTCATTCTTA	.	421.0	172.0	371.0	0.0	A|0.999;C|0.001	153
PSMD13	5719	hgsc.bcm.edu;bcgsc.ca	37	11	248788	248788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PSMD13	NM_175932	exon6	c.A587G	p.Q196R	AGCAGCAGGAGAG	.	72.0	4.0	119.0	0.0	.	515
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8376068	8376068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTPRM	NM_001105244	exon25	c.A3196G	p.I1066V	CGAGAGATCAGAC	.	67.0	4.0	68.0	0.0	.	228
QSER1	79832	hgsc.bcm.edu;bcgsc.ca	37	11	32977609	32977609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	QSER1	NM_001076786	exon7	c.A4306G	p.K1436E	AACAAGAAGGAAT	.	71.0	4.0	115.0	0.0	.	95
RASA1	5921	broad.mit.edu;bcgsc.ca	37	5	86665656	86665668	+	Frame_Shift_Del	DEL	AGCACTTTAGTGA	AGCACTTTAGTGA	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	AGCACTTTAGTGA	AGCACTTTAGTGA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASA1	NM_002890	exon12	c.1637_1649del	p.546_550del	TAGTTCAGCACTT	.	143.0	12.0	188.0	0.0	.	661
RASEF	158158	hgsc.bcm.edu;bcgsc.ca	37	9	85627416	85627416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASEF	NM_152573	exon5	c.A776G	p.Q259R	TTTGATTGTTCTT	.	77.0	4.0	74.0	0.0	.	280
RELN	5649	hgsc.bcm.edu;bcgsc.ca	37	7	103162472	103162472	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RELN	NM_173054	exon48	c.T7665C	p.S2555S	CACCCCACTGAAA	.	75.0	4.0	57.0	0.0	.	574
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74169787	74169787	+	Missense_Mutation	SNP	C	C	T	rs144334591		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RNF157	NM_052916	exon3	c.G292A	p.V98I	ACTTGACGAGCCT	.	131.0	62.0	152.0	0.0	C|1.000;T|0.000	228
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23909856	23909856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SACS	NM_014363	exon10	c.A8159G	p.D2720G	ATTCTGTCTGATG	.	72.0	4.0	106.0	0.0	.	298
SCAPER	49855	hgsc.bcm.edu;bcgsc.ca	37	15	77059425	77059425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SCAPER	NM_020843	exon10	c.T1253C	p.M418T	TCTGCCATGGACT	.	76.0	4.0	155.0	0.0	.	137
SEPT4	5414	hgsc.bcm.edu;bcgsc.ca	37	17	56603141	56603141	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SEPT4	NM_001256782	exon5	c.A498G	p.G166G	AGACTCTCCTGAG	.	58.0	4.0	80.0	0.0	.	68
SGK3	23678	hgsc.bcm.edu;bcgsc.ca	37	8	67752280	67752280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SGK3	NM_001033578	exon11	c.A784G	p.R262G	GAGCACAGAGCTA	.	75.0	4.0	85.0	0.0	.	1003
SGOL2	151246	hgsc.bcm.edu;bcgsc.ca	37	2	201437542	201437542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SGOL2	NM_001160046	exon7	c.A2473G	p.I825V	AACCAAATATATG	.	119.0	5.0	116.0	0.0	.	94
SLC17A6	57084	hgsc.bcm.edu;bcgsc.ca	37	11	22381052	22381052	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC17A6	NM_020346	exon4	c.A552G	p.R184R	TGTCAGAATACTG	.	96.0	4.0	139.0	0.0	.	580
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19698204	19698204	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC24A3	NM_020689	exon16	c.C1752T	p.S584S	CTACTCCGTAGGC	.	241.0	103.0	235.0	0.0	.	91
SLC7A13	157724	hgsc.bcm.edu;bcgsc.ca	37	8	87242258	87242258	+	Silent	SNP	A	A	G	rs141043236	byfrequency	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC7A13	NM_138817	exon1	c.T249C	p.F83F	CTTGAGAAAATAG	.	87.0	4.0	53.0	0.0	A|0.996;G|0.004	90
SLCO1B3	28234	hgsc.bcm.edu;bcgsc.ca	37	12	21068948	21068948	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLCO1B3	NM_019844	exon16	c.T1876C	p.L626L	GTCTACTTGGGCT	.	58.0	5.0	59.0	0.0	.	155
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144905987	144905987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLITRK2	NM_001144005	exon5	c.G2044A	p.G682S	ACAGACGGCCATG	.	51.0	43.0	57.0	0.0	.	136
SNAP91	9892	hgsc.bcm.edu;bcgsc.ca	37	6	84371275	84371275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SNAP91	NM_001242794	exon5	c.A398G	p.E133G	GCCTTTTCATTCA	.	72.0	4.0	134.0	0.0	.	23
SNX3	8724	hgsc.bcm.edu;bcgsc.ca	37	6	108544209	108544209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SNX3	NM_003795	exon2	c.G203A	p.R68K	CTTCTTCTAACAG	.	50.0	4.0	71.0	0.0	.	226
SRRM1	10250	hgsc.bcm.edu;bcgsc.ca	37	1	24997900	24997900	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SRRM1	NM_005839	exon16	c.A2424G	p.G808G	AGGTGGAAAGAAA	.	66.0	4.0	100.0	0.0	.	93
STARD8	9754	hgsc.bcm.edu;bcgsc.ca	37	X	67937131	67937131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STARD8	NM_001142503	exon6	c.T375C	p.S125S	CTGGTCTCCTATG	.	78.0	4.0	96.0	0.0	.	196
STK17B	9262	hgsc.bcm.edu;bcgsc.ca	37	2	197021354	197021354	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STK17B	NM_004226	exon3	c.A144G	p.R48R	ACATTGTCTAACC	.	98.0	4.0	102.0	0.0	.	334
SYNE1	23345	hgsc.bcm.edu;bcgsc.ca	37	6	152763360	152763360	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE1	NM_033071	exon31	c.A3879G	p.S1293S	CTTTGCTGAGATC	.	73.0	4.0	107.0	0.0	.	607
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64641759	64641759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE2	NM_182914	exon95	c.A17333G	p.E5778G	CTAAAGAGTCTGT	.	59.0	4.0	96.0	0.0	.	164
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19186095	19186095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TAS1R2	NM_152232	exon1	c.G60C	p.E20D	AGCCGGCTCAGCC	.	135.0	90.0	186.0	0.0	.	93
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167689611	167689611	+	Silent	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001122679	exon29	c.C8094G	p.A2698A	CACGGCCTGGGCC	.	63.0	26.0	60.0	0.0	.	.
TEP1	7011	hgsc.bcm.edu;bcgsc.ca	37	14	20859791	20859791	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TEP1	NM_007110	exon13	c.A2064G	p.A688A	CCTGTCTGCATTA	.	72.0	4.0	149.0	0.0	.	95
TEX14	56155	hgsc.bcm.edu;bcgsc.ca	37	17	56638968	56638968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TEX14	NM_001201457	exon30	c.A4208G	p.H1403R	GTAGAGTGAGCTC	.	109.0	5.0	114.0	0.0	.	810
TMEFF2	23671	hgsc.bcm.edu;bcgsc.ca	37	2	193056689	193056689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMEFF2	NM_016192	exon2	c.T199C	p.F67L	AGAGGAAGAGATC	.	91.0	4.0	86.0	0.0	.	524
TMF1	7110	hgsc.bcm.edu;bcgsc.ca	37	3	69079080	69079080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMF1	NM_007114	exon11	c.A2480G	p.Q827R	GACATCTGAATTT	.	77.0	4.0	132.0	0.0	.	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7579349	7579349	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	TP53,brain,glioma,-1	TP53	NM_000546	exon4	c.T338G	p.F113C	TGCAAGAAGCCCA	.	137.0	84.0	200.0	0.0	.	70225
TRIM16L	147166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18638692	18638692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRIM16L	NM_001037330	exon5	c.G966T	p.K322N	TTCCAAGAAGGAA	.	182.0	74.0	161.0	0.0	.	90
TRNT1	51095	hgsc.bcm.edu;bcgsc.ca	37	3	3189269	3189269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRNT1	NM_182916	exon7	c.T938C	p.L313S	TGAGGTTGAAGAT	.	102.0	5.0	148.0	0.0	.	90
TSHZ2	128553	hgsc.bcm.edu;bcgsc.ca	37	20	51872639	51872639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TSHZ2	NM_173485	exon2	c.A2642G	p.E881G	CACAAGAGCGTAT	.	86.0	4.0	104.0	0.0	.	232
USP15	9958	hgsc.bcm.edu;bcgsc.ca	37	12	62790141	62790141	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP15	NM_001252078	exon20	c.T2637C	p.A879A	GATTGCTGTTTCC	.	75.0	6.0	124.0	0.0	.	1084
USP47	55031	hgsc.bcm.edu;bcgsc.ca	37	11	11941963	11941963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP47	NM_017944	exon9	c.G936A	p.M312I	AACCATGCATAGG	.	58.0	4.0	102.0	0.0	.	660
USP9X	8239	hgsc.bcm.edu;bcgsc.ca	37	X	41088999	41088999	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP9X	NM_001039591	exon43	c.A7398G	p.T2466T	GATGACACTTGCA	.	108.0	5.0	79.0	0.0	.	563
VWA2	340706	hgsc.bcm.edu;bcgsc.ca	37	10	116045937	116045937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	VWA2	NM_001272046	exon11	c.A1237G	p.I413V	GATGGCATTCCCT	.	72.0	4.0	115.0	0.0	.	156
WDHD1	11169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55408242	55408242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDHD1	NM_007086	exon26	c.A3356G	p.Q1119R	AGTTTCTGATTTG	.	82.0	51.0	117.0	1.0	.	91
WSB1	26118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	25630657	25630657	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WSB1	NM_015626	exon3	c.T474A	p.Y158X	TGTATATACAGGT	.	90.0	34.0	115.0	0.0	.	226
YIPF6	286451	hgsc.bcm.edu;bcgsc.ca	37	X	67731743	67731743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	YIPF6	NM_173834	exon2	c.A110G	p.E37G	AAGGAGAAATCAC	.	50.0	4.0	47.0	0.0	.	130
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100334504	100334504	+	RNA	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZAN	.	.	.	.	CCGACCTATGGGA	.	101.0	45.0	86.0	0.0	.	142
ZBTB41	360023	hgsc.bcm.edu;bcgsc.ca	37	1	197169179	197169179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZBTB41	NM_194314	exon1	c.T425C	p.F142S	TAAAGAAATTCAA	.	83.0	4.0	42.0	0.0	.	92
ZC3H12D	340152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	149783104	149783104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_207360	exon3	c.A308G	p.H103R	TTTCCATGGCTAC	.	41.0	4.0	94.0	0.0	.	.
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68215323	68215323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZFYVE26	NM_015346	exon42	c.T7450C	p.S2484P	AGGCAGAACGCAG	.	68.0	4.0	117.0	0.0	.	162
ZNF347	84671	hgsc.bcm.edu;bcgsc.ca	37	19	53643997	53643997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF347	NM_001172675	exon5	c.A2087G	p.K696R	GCAAGCTTTGATG	.	122.0	6.0	88.0	0.0	.	90
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37211090	37211090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF567	NM_152603	exon4	c.G1371T	p.M457I	TAGAATGAAGTCA	.	108.0	32.0	92.0	0.0	.	90
ZNF576	79177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44103100	44103100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF576	NM_001145347	exon3	c.G203A	p.G68E	TGCAGGGGGTCCT	.	173.0	80.0	133.0	0.0	.	90
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47919903	47919903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF630	NM_001037735	exon4	c.A164G	p.D55G	ATTACATCTGGTT	.	27.0	21.0	22.0	0.0	.	131
ZNF662	389114	hgsc.bcm.edu;bcgsc.ca	37	3	42954744	42954744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF662	NM_207404	exon4	c.A203G	p.E68G	TGGAAGAGCCATT	.	62.0	4.0	127.0	0.0	.	90
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149129992	149129992	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF777	NM_015694	exon6	c.C1371T	p.D457D	CTCCTCGTCTTGT	.	143.0	63.0	141.0	0.0	.	136
