Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20698148	20698148	+	Missense_Mutation	SNP	G	G	T	rs199505251	alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCB5	NM_001163941	exon14	c.G1556T	p.G519V	TGGTAGGGGAAAA	.	25.0	11.0	55.0	0.0	G|0.999;A|0.001	158
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20762841	20762841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCB5	NM_001163941	exon21	c.A2624T	p.K875M	CTGGAAAGGTAAA	.	44.0	6.0	77.0	0.0	.	158
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95822825	95822825	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCC4	NM_005845	exon14	c.G1785C	p.Q595H	GAGGTACTGCAAC	.	44.0	19.0	47.0	0.0	.	515
ABHD16A	7920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31660873	31660873	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABHD16A	NM_021160	exon7	c.A557T	p.E186V	AGGGGCTCTGGGC	.	69.0	53.0	80.0	0.0	.	91
ADAMTSL1	92949	broad.mit.edu;bcgsc.ca	37	9	18776974	18776974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADAMTSL1	NM_001040272	exon19	c.A2747T	p.Q916L	ACGGCCAGCACCT	.	69.0	54.0	89.0	2.0	.	230
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25141705	25141705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADCY3	NM_004036	exon1	c.G152T	p.R51L	ATGAAGCGAGGCA	.	138.0	41.0	146.0	1.0	.	94
ADORA3	140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112045693	112045693	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ADORA3	NM_020683	exon1	c.A284T	p.H95L	GAGGCGTGGGTAA	.	201.0	84.0	339.0	2.0	.	156
AKAP17A	8227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	1718233	1718233	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	AKAP17A	NM_005088	exon4	c.G1060T	p.E354X	CTGCAGGAGAAGA	.	65.0	40.0	178.0	0.0	.	40
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73678026	73678026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ALMS1	NM_015120	exon8	c.G4369T	p.A1457S	TCAGTTGCTCCTG	.	124.0	75.0	91.0	0.0	.	142
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139909162	139909162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ANKHD1	NM_017747	exon29	c.A6631T	p.N2211Y	CTTTTCAATCACT	.	93.0	41.0	123.0	0.0	.	185
ANO9	338440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	428381	428381	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ANO9	NM_001012302	exon14	c.T1199A	p.V400E	AGGGCCACGCACC	.	101.0	30.0	133.0	1.0	.	227
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27107029	27107029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ARID1A	NM_006015	exon20	c.A6640T	p.S2214C	CAGGCCAGCCTCC	.	90.0	38.0	124.0	0.0	.	584
ARX	170302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	25033712	25033712	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ARX	NM_139058	exon1	c.A143T	p.Q48L	AAGCTCTGCGCGG	.	48.0	40.0	132.0	0.0	.	130
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155449286	155449286	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASH1L	NM_018489	exon3	c.A3375T	p.A1125A	AAAACCTGCATCA	.	186.0	52.0	142.0	0.0	.	234
ASNS	440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97484710	97484710	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASNS	NM_133436	exon9	c.A1092T	p.G364G	TCCTTCTCCAGAG	.	45.0	13.0	32.0	0.0	.	91
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31320038	31320038	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASXL3	NM_030632	exon11	c.A2670T	p.T890T	AGGGACAGATAAT	.	50.0	21.0	53.0	0.0	.	49
ATAD2	29028	broad.mit.edu;ucsc.edu	37	8	124361592	124361592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ATAD2	NM_014109	exon14	c.T1739C	p.I580T	GGATCTATAGAAT	.	127.0	18.0	73.0	1.0	.	92
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108114838	108114838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ATM	NM_000051	exon6	c.T655A	p.C219S	ATTCAGTGTGCGA	.	39.0	14.0	54.0	0.0	.	3419
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160803895	160803895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	B3GALNT1	NM_001038628	exon8	c.A648T	p.R216S	AAATCCTCTATAG	.	26.0	5.0	28.0	0.0	.	91
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79989645	79989645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	BRWD3	NM_153252	exon11	c.A1058T	p.E353V	ATTTTCTCAGGAA	.	63.0	6.0	81.0	0.0	.	134
C17orf47	284083	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	56621179	56621179	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C17orf47	NM_001038704	exon1	c.T369A	p.V123V	TGGACTAACTTTC	.	165.0	103.0	158.0	1.0	.	135
C19orf69	100170765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41949136	41949136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001130514	exon1	c.C62A	p.P21H	CACCCCCCCAGGC	.	24.0	10.0	26.0	0.0	.	.
C8orf58	541565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22458397	22458397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C8orf58	NM_001013842	exon2	c.G43T	p.G15W	GCAGATGGGGCTG	.	64.0	42.0	76.0	0.0	.	91
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114500592	114500592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C9orf84	NM_173521	exon10	c.T1193A	p.I398K	AAAAATATCTCAA	.	63.0	29.0	43.0	0.0	.	92
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201060850	201060850	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CACNA1S	NM_000069	exon5	c.C612T	p.L204L	CATAAAGAGGACC	.	220.0	32.0	211.0	0.0	.	94
CALCOCO1	57658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54118967	54118967	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CALCOCO1	NM_020898	exon2	c.A60T	p.V20V	CCGGGCTACATTG	.	246.0	146.0	230.0	0.0	.	91
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2984108	2984108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CARD11	NM_032415	exon5	c.A422T	p.Q141L	TTCATCTGCTGCT	.	79.0	33.0	102.0	0.0	.	870
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	43055011	43055011	+	Missense_Mutation	SNP	G	G	A	rs145632548		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCDC30	NM_001080850	exon9	c.G1240A	p.V414I	CAGAACGTAGATG	.	46.0	18.0	67.0	0.0	G|1.000;A|0.000	90
CCDC42B	387885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113587689	113587689	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001144872	exon1	c.C27T	p.F9F	ATATTTCCGACTG	.	82.0	48.0	62.0	0.0	.	.
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91787522	91787522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCDC88C	NM_001080414	exon13	c.A1469T	p.E490V	CTCTCCTCCAACA	.	97.0	22.0	110.0	0.0	.	25
CCR1	1230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46244963	46244963	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCR1	NM_001295	exon2	c.T842A	p.L281Q	ACAGCCAGGTCCA	.	131.0	77.0	114.0	0.0	.	660
CCR7	1236	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38711550	38711550	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCR7	NM_001838	exon3	c.T581A	p.L194H	TACAGGAGCTCTG	.	139.0	76.0	120.0	2.0	.	659
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	80997175	80997175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CEP128	NM_152446	exon21	c.T2936G	p.L979R	TCTTCTAGTAGGC	.	68.0	38.0	71.0	0.0	.	91
CHADL	150356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41632548	41632548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHADL	NM_138481	exon4	c.A2003T	p.E668V	ATGAGCTCCAGCT	.	108.0	41.0	164.0	0.0	.	68
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61765635	61765635	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHD7	NM_017780	exon31	c.C6351T	p.L2117L	CATCCTCAATGAC	.	182.0	50.0	176.0	0.0	.	141
CHEK1	1111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	125514071	125514071	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHEK1	NM_001244846	exon10	c.A1009T	p.K337X	ATTGATAAATTGG	.	77.0	39.0	66.0	0.0	.	1509
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	383657	383657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHL1	NM_001253388	exon5	c.G571T	p.A191S	TACTTCGCAAACG	.	340.0	174.0	229.0	0.0	.	583
CLCN7	1186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1511413	1511413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CLCN7	NM_001287	exon4	c.A344T	p.N115I	GTGTGATTGATCC	.	59.0	26.0	68.0	0.0	.	92
CMYA5	202333	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79057643	79057643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CMYA5	NM_153610	exon8	c.A11270T	p.E3757V	TGGTAGAAGAATA	.	70.0	37.0	100.0	1.0	.	77
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	135095305	135095305	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CNOT4	NM_001190850	exon7	c.A781T	p.K261X	TATTTTTATCAAC	.	63.0	30.0	78.0	0.0	.	90
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238275833	238275833	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	COL6A3	NM_004369	exon11	c.T4997A	p.V1666E	GTGTCCACTATTT	.	123.0	79.0	134.0	2.0	.	526
CRABP2	1382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156670823	156670823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CRABP2	NM_001199723	exon3	c.A92T	p.K31M	GCAATCTTCCTCA	.	116.0	31.0	77.0	0.0	.	91
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34038176	34038176	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CSMD2	NM_052896	exon51	c.C7698T	p.G2566G	CTCAGCGCCTGCC	.	87.0	35.0	107.0	0.0	.	103
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A	rs121913400	bycluster	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C98A	p.S33Y	TGGACTCTGGAAT	.	145.0	44.0	139.0	0.0	.	24361
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	16877186	16877186	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CUBN	NM_001081	exon64	c.A10189T	p.R3397X	AGTCTCTGTTGCA	.	242.0	68.0	80.0	0.0	.	166
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83126557	83126557	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CYLC1	NM_021118	exon3	c.G156A	p.L52L	ACCTTTGAAATCA	.	58.0	35.0	99.0	0.0	.	112
DEF6	50619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35280290	35280290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DEF6	NM_022047	exon4	c.A635T	p.E212V	ACCAGGAGCTCAT	.	93.0	76.0	167.0	0.0	.	227
DNAH2	146754	broad.mit.edu;bcgsc.ca	37	17	7699791	7699791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DNAH2	NM_020877	exon49	c.A7684G	p.I2562V	TCCCAGATCATCC	.	70.0	60.0	95.0	1.0	.	102
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13830159	13830159	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DNAH5	NM_001369	exon37	c.T6225A	p.P2075P	AAATTCAGGGTTC	.	233.0	44.0	163.0	0.0	.	182
DTNB	1838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25705696	25705696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DTNB	NM_021907	exon10	c.A1048G	p.M350V	AGGACATGTGGCT	.	111.0	76.0	96.0	0.0	.	137
EIF2B2	8892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75469779	75469779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF2B2	NM_014239	exon1	c.G86C	p.R29P	GGCCGCGCAGCTC	.	222.0	67.0	202.0	2.0	.	91
EIF3F	8665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8017529	8017529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF3F	NM_003754	exon8	c.A1034T	p.Q345L	TCACACAGTCACA	.	62.0	16.0	57.0	0.0	.	500
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184039550	184039550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF4G1	NM_001194946	exon11	c.C1199G	p.P400R	CTGTGCCCATTGC	.	155.0	96.0	195.0	0.0	.	344
ELFN2	114794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37771020	37771020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ELFN2	NM_052906	exon3	c.C555A	p.N185K	GAAGGGGTTGCCG	.	118.0	43.0	181.0	0.0	.	70
ELL2	22936	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95242487	95242487	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ELL2	NM_012081	exon6	c.482-1G>C	.	TTTTCCCTAAAGT	.	88.0	34.0	104.0	1.0	.	90
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144943295	144943295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EPPK1	NM_031308	exon1	c.A4127T	p.Q1376L	GCCGCCTGGGGCA	.	100.0	41.0	51.0	0.0	.	25
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212812232	212812232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERBB4	NM_001042599	exon3	c.A344T	p.Y115F	AAGGCATATCGAT	.	94.0	58.0	97.0	0.0	.	1461
ERCC6L	54821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71425152	71425152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERCC6L	NM_017669	exon2	c.C3465A	p.N1155K	GGACTTGTTTTCT	.	49.0	39.0	59.0	0.0	.	93
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23711862	23711862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERN2	NM_033266	exon13	c.A1667T	p.E556V	TCACCTTCAGGGT	.	59.0	34.0	58.0	0.0	.	322
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80049390	80049390	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FASN	NM_004104	exon9	c.G1200A	p.V400V	GATGTGCACGTTG	.	128.0	36.0	157.0	0.0	.	90
FBLN2	2199	hgsc.bcm.edu;bcgsc.ca	37	3	13670761	13670761	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001004019	exon13	c.T2811C	p.F937F	CGGCTTTCAGCGG	.	107.0	60.0	112.0	0.0	.	91
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	13670764	13670765	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001004019	exon13	c.2814_2815del	p.938_939del	CTTTCAGCGGGAT	.	107.0	54.0	110.0	0.0	.	91
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	15928539	15928539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBXL7	NM_012304	exon3	c.A668T	p.Y223F	GCTGTTACAATAT	.	246.0	53.0	153.0	0.0	.	228
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157767574	157767574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FCRL1	NM_001159397	exon8	c.A1034T	p.Q345L	TGCTGTTGTCTGC	.	202.0	33.0	125.0	0.0	.	153
FLG	2312	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152279631	152279631	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FLG	NM_002016	exon3	c.A7731C	p.S2577S	GTCTTCTGAGTGT	.	327.0	76.0	213.0	1.0	.	106
FMN1	342184	bcgsc.ca;mdanderson.org	37	15	33194233	33194233	+	Missense_Mutation	SNP	T	T	A	rs199507823		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FMN1	NM_001103184	exon9	c.A2717T	p.H906L	AACTCATGTAAAA	.	32.0	26.0	35.0	1.0	.	23
FOLR3	2352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71847147	71847147	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	GCCCCGAGGACGA	.	206.0	71.0	354.0	0.0	.	.
FOLR3	2352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71850783	71850783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	TTTGACTCAGCCC	.	128.0	54.0	174.0	0.0	.	.
FOXJ3	22887	ucsc.edu;bcgsc.ca	37	1	42657316	42657316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FOXJ3	NM_001198851	exon11	c.A1009T	p.T337S	TCACTGTACTGCT	.	153.0	52.0	226.0	2.0	.	228
FRK	2444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116277657	116277657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FRK	NM_002031	exon5	c.A916T	p.T306S	ACTCTGTAATAAT	.	31.0	12.0	63.0	0.0	.	948
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48529665	48529665	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FRYL	NM_015030	exon53	c.A7146G	p.V2382V	AGAAAATACAACC	.	50.0	27.0	41.0	0.0	.	69
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44975744	44975744	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FSCB	NM_032135	exon1	c.A447G	p.E149E	CACTTTTTCTACA	.	167.0	107.0	146.0	0.0	.	587
GALK1	2584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73760089	73760089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GALK1	NM_000154	exon2	c.G244T	p.A82S	CATCGGCACCCTC	.	57.0	17.0	69.0	0.0	.	90
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42088201	42088201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLI3	NM_000168	exon5	c.T568A	p.F190I	GGCTGAAGGGAGA	.	167.0	55.0	240.0	0.0	.	1149
GLT8D2	83468	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104396987	104396987	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLT8D2	NM_031302	exon5	c.T210A	p.N70K	GATGCTATTGATG	.	151.0	89.0	115.0	1.0	.	92
GLUL	2752	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182353642	182353642	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLUL	NM_001033056	exon7	c.T1020C	p.R340R	GGGGCGACGATCT	.	200.0	41.0	136.0	0.0	.	90
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25701321	25701321	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GPR158	NM_020752	exon4	c.T1254G	p.L418L	ACGACTTGCCATC	.	296.0	82.0	115.0	0.0	.	141
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	89971058	89971058	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GPR98	NM_032119	exon24	c.5111-2A>T	.	TCCACTAGGCTTG	.	59.0	23.0	82.0	0.0	.	103
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10032379	10032379	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GRIN2A	NM_000833	exon4	c.A444T	p.G148G	GGACGCTCCAAAC	.	29.0	18.0	26.0	0.0	.	349
GRXCR1	389207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	43032457	43032457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GRXCR1	NM_001080476	exon4	c.T773A	p.M258K	GCAAGATGTCCAT	.	118.0	32.0	75.0	1.0	.	23
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156594457	156594457	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HAPLN2	NM_021817	exon6	c.T621A	p.P207P	CTACCCTGTGCTC	.	30.0	7.0	31.0	0.0	.	90
HDHD3	81932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116135994	116135994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HDHD3	NM_031219	exon2	c.C641T	p.P214L	GCCTGTGGGCCAA	.	105.0	64.0	90.0	0.0	.	90
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112685903	112685903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001109662	exon27	c.A3814T	p.M1272L	AAGGCATGTTGTT	.	80.0	16.0	67.0	0.0	.	.
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143092423	143092423	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HIVEP2	NM_006734	exon5	c.G3453T	p.L1151L	CAGGTGCAGTGGC	.	91.0	35.0	88.0	0.0	.	95
HMGXB3	22993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149431544	149431544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HMGXB3	NM_014983	exon20	c.A3668T	p.D1223V	CCTTCGACAATGC	.	68.0	28.0	88.0	0.0	.	24
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71007743	71007743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HYDIN	NM_001270974	exon34	c.C5218T	p.P1740S	CAACAGGCTTTTG	.	191.0	23.0	162.0	0.0	.	92
IFIH1	64135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163124064	163124064	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IFIH1	NM_022168	exon15	c.A2823G	p.V941V	TTCTCTTACAATG	.	34.0	15.0	43.0	0.0	.	91
IFNW1	3467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21141360	21141360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IFNW1	NM_002177	exon1	c.G210T	p.Q70H	CTGCAACTGGCTC	.	53.0	42.0	82.0	1.0	.	90
IL18BP	10068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71712350	71712350	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IL18BP	NM_001145057	exon4	c.A339G	p.R113R	AGGCCGACTGTGG	.	85.0	36.0	108.0	0.0	.	90
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	9462080	9462080	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IPO7	NM_006391	exon23	c.2774delA	p.E925fs	CTGGTGAAGATGG	.	155.0	48.0	138.0	0.0	.	271
ITGA9	3680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37860441	37860441	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITGA9	NM_002207	exon28	c.G3069C	p.E1023D	GAAAGAGAATGAA	.	163.0	51.0	181.0	2.0	.	715
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52861120	52861120	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITIH4	NM_001166449	exon3	c.T345C	p.A115A	GAGGCCAGCGCTC	.	177.0	82.0	157.0	1.0	.	46
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52848087	52848087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITIH4	NM_002218	exon23	c.G2627T	p.G876V	AACTGGCCTGAGA	.	99.0	27.0	111.0	0.0	.	46
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24438936	24438936	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITSN2	NM_006277	exon32	c.T3972C	p.D1324D	TTTGAAATCTGTG	.	87.0	16.0	60.0	0.0	.	539
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196197434	196197434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KCNT2	NM_198503	exon28	c.C3328G	p.L1110V	TTGGAAGGTAGGC	.	87.0	17.0	60.0	0.0	.	159
KIAA1549	57670	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138602195	138602195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIAA1549	NM_020910	exon2	c.C2177A	p.S726Y	TCGAGAGAATCAG	.	63.0	24.0	71.0	1.0	.	369
KIF15	56992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44879894	44879894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF15	NM_020242	exon27	c.T3299A	p.I1100N	CCCTGATTCAGGA	.	150.0	86.0	155.0	0.0	.	91
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72351437	72351437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF19	NM_153209	exon20	c.T2983C	p.S995P	GGATGCTCCCGGC	.	53.0	10.0	52.0	0.0	.	90
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10384901	10384901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF1B	NM_015074	exon24	c.A2485C	p.T829P	ACTGTGACTGGCA	.	83.0	35.0	78.0	0.0	.	93
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55593652	55593652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	KIT,fibrous_tissue_and_uncertain_origin,gastrointestinal_stromal_tumour,0	KIT	NM_000222	exon11	c.C1718A	p.P573Q	TAGACCCAACACA	.	138.0	77.0	91.0	0.0	.	20166
KLRC4	8302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10561527	10561527	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KLRC4	NM_013431	exon2	c.A270T	p.T90T	AACTATTGTTTTT	.	317.0	180.0	344.0	0.0	.	90
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152732782	152732782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KPRP	NM_001025231	exon2	c.T718A	p.Y240N	GGCTCCTATGGGA	.	146.0	35.0	80.0	0.0	.	95
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152785001	152785001	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LCE1B	NM_178349	exon1	c.C79G	p.P27A	CTCACCCCTAGAT	.	367.0	174.0	245.0	1.0	.	68
LDB2	9079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	16510279	16510279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LDB2	NM_001290	exon7	c.G770A	p.R257Q	TTTCTCCGTTTGG	.	108.0	52.0	97.0	0.0	.	90
LEP	3952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127894794	127894794	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LEP	NM_000230	exon3	c.T482A	p.L161Q	GGCAGCTGGACCT	.	25.0	13.0	40.0	0.0	.	90
LGALS9B	284194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	20358665	20358665	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LGALS9B	NM_001042685	exon5	c.T491A	p.F164Y	TGGGAGAACGGCA	.	479.0	121.0	679.0	1.0	.	23
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71960645	71960645	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LGR5	NM_003667	exon11	c.A1023T	p.S341S	GATCTCATCTCTT	.	176.0	91.0	125.0	0.0	.	527
LMOD2	442721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123302237	123302237	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LMOD2	NM_207163	exon2	c.T597A	p.I199I	AGTGATTGAGGAC	.	85.0	38.0	97.0	0.0	.	68
LOC100133286	0	broad.mit.edu;bcgsc.ca	37	21	37444696	37444696	+	RNA	SNP	C	C	T	rs2835265	byfrequency	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	TCTCTACGGGATT	.	50.0	4.0	118.0	0.0	C|0.875;T|0.125	.
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113655151	113655151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRIG2	NM_014813	exon14	c.G1849T	p.A617S	ACTGGTGCCATGG	.	79.0	17.0	123.0	0.0	.	229
LRRC48	83450	broad.mit.edu;bcgsc.ca	37	17	17910349	17910349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC48	NM_031294	exon12	c.G1214C	p.C405S	CTCAGTGCCGGGA	.	193.0	40.0	183.0	2.0	.	46
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40137322	40137322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC4C	NM_001258419	exon7	c.T521C	p.L174S	CGGCGCAAAGAAG	.	76.0	18.0	52.0	0.0	.	521
LRRC6	23639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133595953	133595953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC6	NM_012472	exon11	c.A1214T	p.Q405L	TTTGTTTGTTCTC	.	289.0	44.0	95.0	0.0	.	92
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	101606245	101606246	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRK1	NM_024652	exon32	c.5603_5604del	p.1868_1868del	CTTCCAGTGTGCC	.	70.0	57.0	107.0	0.0	.	602
LZTS1	11178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20112615	20112615	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LZTS1	NM_021020	exon1	c.C78T	p.R26R	GGACTTGCGCAGC	.	105.0	27.0	99.0	0.0	.	91
MAATS1	89876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119462964	119462964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_033364	exon14	c.G1823A	p.R608Q	AGCGGCGGGTACG	.	125.0	36.0	120.0	1.0	.	.
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	71494849	71494849	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP1B	NM_005909	exon5	c.T5667C	p.Y1889Y	TGACTATGAGTCT	.	48.0	27.0	54.0	0.0	.	155
MAP2K2	5605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4110509	4110509	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP2K2	NM_030662	exon3	c.A448T	p.M150L	TCACCATGTGTTC	.	17.0	8.0	59.0	0.0	.	510
MAP3K6	9064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27684710	27684710	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP3K6	NM_004672	exon21	c.G2877A	p.P959P	GCGCTTCGGGGGG	.	96.0	43.0	128.0	0.0	.	1523
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86989078	86989078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAPK10	NM_002753	exon10	c.A833T	p.Q278L	CCTAGTTGTTCAA	.	92.0	67.0	100.0	0.0	.	1402
MC2R	4158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13885429	13885429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MC2R	NM_000529	exon2	c.T89C	p.I30T	AAAAATATCTCCT	.	65.0	23.0	62.0	0.0	.	95
METTL1	4234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58163625	58163625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	METTL1	NM_005371	exon3	c.G389T	p.G130V	TGGAAGCCACCTG	.	135.0	77.0	157.0	0.0	.	492
MFSD4	148808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	205553249	205553249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MFSD4	NM_181644	exon4	c.T857A	p.L286Q	CACACCTAGGTAG	.	46.0	12.0	54.0	0.0	.	92
MFSD6	54842	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191301292	191301292	+	Silent	SNP	G	G	A	rs115585862	byfrequency;alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MFSD6	NM_017694	exon3	c.G537A	p.L179L	TATCCTGCCAACA	.	93.0	32.0	86.0	0.0	G|0.996;T|0.004	92
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141765270	141765270	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MGAM	NM_004668	exon38	c.4618+2T>A	.	CATTGGTGCGTGG	.	64.0	37.0	90.0	0.0	.	70
MGAT1	4245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180218676	180218676	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MGAT1	NM_001114617	exon3	c.G1296A	p.A432A	TGGGGGCGCCAGG	.	213.0	96.0	282.0	0.0	.	91
MIR662	724032	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	819494	819494	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	.	.	.	.	TGCACCTGACCCC	.	106.0	29.0	164.0	0.0	.	.
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	118347664	118347664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MLL	NM_001197104	exon4	c.C3301T	p.R1101X	GAAGAACGAGAAA	.	121.0	44.0	151.0	0.0	.	1255
MRPL45	84311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36478426	36478426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MRPL45	NM_032351	exon8	c.A869T	p.E290V	AACCAGAAGAAGA	.	50.0	11.0	86.0	0.0	.	90
MSLN	10232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	813260	813260	+	Missense_Mutation	SNP	C	C	T	rs200684663		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MSLN	NM_005823	exon4	c.C113T	p.A38V	CCCTGGCTGGAGA	.	169.0	49.0	228.0	0.0	C|0.999;T|0.000	91
MTF1	4520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38287832	38287832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MTF1	NM_005955	exon9	c.A1728C	p.L576F	ACCATTTAATATC	.	163.0	78.0	233.0	0.0	.	92
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513058	195513058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MUC4	NM_018406	exon2	c.T5393A	p.V1798D	GAGGAAACGTCGG	.	1859.0	369.0	1820.0	1.0	.	90
MXD4	10608	broad.mit.edu;mdanderson.org	37	4	2252295	2252295	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MXD4	NM_006454	exon6	c.G606T	p.R202R	GCCCAGCCGCCGG	.	16.0	8.0	14.0	0.0	.	226
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	16704767	16704767	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MYO10	NM_012334	exon22	c.A2197T	p.K733X	CCAGTTTCTGTTC	.	64.0	16.0	58.0	0.0	.	3
N4BP2L2	10443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33092036	33092036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	N4BP2L2	NM_014887	exon6	c.A1655G	p.H552R	CTTTTGTGTGATG	.	77.0	43.0	74.0	0.0	.	68
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	35923307	35923307	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NBEA	NM_015678	exon37	c.T5966A	p.L1989X	TTATTTTGAACAG	.	102.0	30.0	130.0	0.0	.	144
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50190491	50190491	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCKAP5L	NM_001037806	exon8	c.T1152C	p.G384G	TGGGGTACCCCCA	.	37.0	8.0	43.0	0.0	.	68
NCR2	9436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41309647	41309647	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCR2	NM_004828	exon3	c.T510C	p.S170S	TCCATCTACCATC	.	63.0	50.0	106.0	0.0	.	91
NCS1	23413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132980139	132980139	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCS1	NM_014286	exon3	c.A118T	p.S40C	TGCCCCAGTGGGC	.	139.0	39.0	123.0	0.0	.	90
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152539201	152539201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEB	NM_004543	exon29	c.A2918T	p.K973M	GCTCGCTTTGCCT	.	109.0	31.0	77.0	0.0	.	145
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	178231110	178231110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEIL3	NM_018248	exon1	c.G3C	p.M1I	AGAGATGGTGGAA	.	264.0	15.0	273.0	0.0	.	660
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	178256896	178256896	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEIL3	NM_018248	exon3	c.T333C	p.Y111Y	TAAATATAAAAAT	.	91.0	79.0	108.0	0.0	.	660
NLRP2	55655	broad.mit.edu;bcgsc.ca	37	19	55496458	55496458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NLRP2	NM_017852	exon7	c.T2074A	p.C692S	GACCTTTGTTCCA	.	51.0	24.0	85.0	2.0	.	120
NME6	10201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	48339972	48339972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NME6	NM_005793	exon2	c.59delA	p.Q20fs	GTGAGCTGGAGAG	.	98.0	27.0	109.0	0.0	.	115
NOL12	79159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38082401	38082401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOL12	NM_024313	exon1	c.T2A	p.M1K	CTGCTATGGGCCG	.	50.0	20.0	66.0	0.0	.	90
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117669901	117669901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOS1	NM_001204218	exon23	c.C3373G	p.P1125A	AGGGCGGGAGGCG	.	158.0	54.0	190.0	0.0	.	154
NOV	4856	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120431542	120431542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOV	NM_002514	exon4	c.T734A	p.M245K	TCTGCATGGTGCG	.	192.0	75.0	100.0	1.0	.	228
NUF2	83540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163295880	163295880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUF2	NM_145697	exon2	c.G39C	p.E13D	AGCTGAGATTGTG	.	93.0	18.0	58.0	0.0	.	231
NUP153	9972	broad.mit.edu;ucsc.edu	37	6	17637902	17637902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUP153	NM_005124	exon16	c.G1946A	p.G649E	CCAATTCCACTAG	.	14.0	5.0	16.0	0.0	.	637
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50412454	50412454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUP62	NM_153719	exon3	c.A611G	p.Q204R	GCTGGCTGTGTGG	.	86.0	38.0	106.0	0.0	.	615
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228563447	228563447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OBSCN	NM_001271223	exon109	c.G25579A	p.A8527T	GTGTACGCGGATG	.	171.0	41.0	184.0	0.0	.	403
OR11H4	390442	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20711071	20711071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR11H4	NM_001004479	exon1	c.T121C	p.F41L	TCATTGTTTTTGG	.	174.0	54.0	150.0	1.0	.	69
OR4D9	390199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	59283045	59283045	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR4D9	NM_001004711	exon1	c.C660A	p.V220V	CACGGTCATCTTG	.	78.0	36.0	94.0	0.0	.	68
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661967	4661967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR51D1	NM_001004751	exon1	c.T947A	p.L316H	GGGTCCTCTGTAT	.	100.0	25.0	67.0	0.0	.	68
OR5R1	219479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56185421	56185421	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR5R1	NM_001004744	exon1	c.T288A	p.A96A	TGCACAAGCATGG	.	93.0	46.0	111.0	2.0	.	70
OR8K5	219453	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	55926911	55926911	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR8K5	NM_001004058	exon1	c.G883T	p.E295X	CCTCTTCGTTTCT	.	39.0	13.0	81.0	0.0	.	72
P4HA1	5033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	74803644	74803660	+	Frame_Shift_Del	DEL	CCTCTTAGATACTCTGT	CCTCTTAGATACTCTGT	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	CCTCTTAGATACTCTGT	CCTCTTAGATACTCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	P4HA1	NM_001142596	exon9	c.1133_1148del	p.378_383del	CCCTTACCTCTTA	.	24.0	13.0	76.0	0.0	.	69
P4HTM	54681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49042389	49042389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	P4HTM	NM_177938	exon6	c.A983T	p.H328L	ATGCCCACGTGGA	.	102.0	58.0	110.0	0.0	.	205
PAN3	255967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28748529	28748529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PAN3	NM_175854	exon2	c.A551T	p.Q184L	TGATGCAGGTATC	.	29.0	20.0	33.0	0.0	.	69
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140308516	140308516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCDHAC1	NM_031882	exon1	c.A2039T	p.Q680L	CTGCCCAGAACTT	.	52.0	24.0	79.0	0.0	.	28
PCDHB2	56133	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140475814	140475814	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCDHB2	NM_018936	exon1	c.A1440T	p.R480S	AGACAGAGACTCG	.	164.0	58.0	249.0	0.0	.	96
PCOLCE2	26577	broad.mit.edu;ucsc.edu	37	3	142542413	142542413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCOLCE2	NM_013363	exon7	c.A910G	p.T304A	TCCCCGTCCGTCT	.	99.0	20.0	112.0	2.0	.	93
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144854658	144854658	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PDE4DIP	NM_001198834	exon43	c.6814-2A>T	.	TCTCCCTGGATAA	.	145.0	9.0	126.0	0.0	.	663
PILRA	29992	ucsc.edu;bcgsc.ca	37	7	99987596	99987596	+	Silent	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PILRA	NM_013439	exon3	c.C540G	p.V180V	CAGGGTCACACAG	.	147.0	51.0	261.0	2.0	.	91
PITX1	5307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134364795	134364795	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PITX1	NM_002653	exon3	c.C619G	p.P207A	ACAGCGGGCTCAT	.	122.0	46.0	193.0	0.0	.	227
PLA2G2F	64600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20474788	20474788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLA2G2F	NM_022819	exon5	c.T530A	p.L177H	GCTTCCTCAATGT	.	193.0	81.0	310.0	1.0	.	91
PLEKHG3	26030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65209799	65209799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLEKHG3	NM_015549	exon15	c.A2870T	p.Q957L	CACCACAGCGTTT	.	73.0	22.0	92.0	0.0	.	91
PLXNB1	5364	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48457128	48457128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLXNB1	NM_001130082	exon19	c.A3658T	p.S1220C	GTGGGCTGGTCTC	.	104.0	30.0	125.0	1.0	.	293
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56227157	56227157	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PMEPA1	NM_020182	exon4	c.A816T	p.A272A	GATGGCTGCGCTC	.	37.0	12.0	27.0	0.0	.	227
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3328344	3328344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PRDM16	NM_022114	exon9	c.T1583A	p.L528Q	CGCCTCTGCTACC	.	27.0	10.0	50.0	0.0	.	660
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228003457	228003457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PRSS38	NM_183062	exon1	c.T40A	p.S14T	GGGCCCTCTGCCC	.	129.0	43.0	131.0	0.0	.	92
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139189340	139189340	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PSD2	NM_032289	exon2	c.A315T	p.A105A	GCTGGCAGAGGGG	.	59.0	32.0	90.0	0.0	.	91
PSMB9	5698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32826201	32826201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PSMB9	NM_002800	exon5	c.A451T	p.S151C	TCCGGCAGCACCT	.	75.0	31.0	94.0	0.0	.	90
PTCH2	8643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45307528	45307528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PTCH2	NM_001166292	exon2	c.T256A	p.W86R	CTACCCAGAGCTG	.	140.0	56.0	228.0	1.0	.	851
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	89712017	89712017	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon6	c.634+1G>T	.	CTTGCAGTAAGTG	.	16.0	12.0	39.0	0.0	.	17735
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144899155	144899155	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_078480	exon11	c.C1305T	p.S435S	CTGCTCGCTCAGC	.	128.0	10.0	111.0	0.0	.	.
RAB3D	9545	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11447930	11447930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RAB3D	NM_004283	exon2	c.C146T	p.P49L	AAGGCGGGAGTGA	.	71.0	53.0	259.0	2.0	.	653
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20585826	20585826	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RALGAPA2	NM_020343	exon15	c.A2031T	p.R677R	TTTGCCTCGTTGC	.	97.0	23.0	99.0	0.0	.	24
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134525525	134525525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RAPGEF1	NM_198679	exon3	c.A309C	p.Q103H	CTGCCTTTGAGAC	.	89.0	67.0	95.0	0.0	.	849
RFTN2	130132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198508920	198508920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RFTN2	NM_144629	exon3	c.G400A	p.A134T	TTTGTGCCTCAGA	.	130.0	73.0	104.0	0.0	.	90
RHBDL3	162494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30616020	30616020	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RHBDL3	NM_138328	exon4	c.A504T	p.T168T	GATCACAGTCACG	.	180.0	106.0	246.0	0.0	.	91
RNF115	27246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145688137	145688137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RNF115	NM_014455	exon9	c.A832T	p.T278S	GACTCTACTCGGC	.	242.0	61.0	166.0	0.0	.	91
ROBO1	6091	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78717373	78717373	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ROBO1	NM_002941	exon13	c.A1710T	p.T570T	GACATCTGTCACT	.	116.0	34.0	112.0	1.0	.	67
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134994077	134994077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SAGE1	NM_018666	exon18	c.A2486T	p.Y829F	TAAAATATCAATT	.	37.0	31.0	55.0	0.0	.	133
SAMD14	201191	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48191392	48191392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SAMD14	NM_174920	exon10	c.G1078A	p.G360S	ACTGGCCCACCTG	.	139.0	41.0	168.0	1.0	.	68
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38951586	38951586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SCN11A	NM_014139	exon8	c.1072delC	p.Q358fs	AATCTTGGGTCAT	.	94.0	23.0	60.0	0.0	.	99
SCNN1D	6339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1223365	1223365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SCNN1D	NM_001130413	exon12	c.G1610T	p.G537V	CCGCCGGCGGGGA	.	105.0	52.0	150.0	0.0	.	90
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4188918	4188918	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SDK1	NM_152744	exon30	c.T4448A	p.L1483H	GAGAGCTCCTGGT	.	54.0	16.0	75.0	0.0	.	138
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4201422	4201422	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SDK1	NM_152744	exon32	c.A4734T	p.P1578P	AGTTCCAGGAGAG	.	90.0	39.0	134.0	0.0	.	138
SEPT2	4735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	242283230	242283230	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SEPT2	NM_001008491	exon10	c.A760T	p.R254X	AAGGTCAGAGGCC	.	162.0	44.0	123.0	0.0	.	68
SIAH1	6477	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48395767	48395767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SIAH1	NM_001006610	exon2	c.A666T	p.L222F	TAAGACTAACATG	.	73.0	59.0	131.0	2.0	.	415
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1053526	1053526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC12A7	NM_006598	exon23	c.A3098G	p.D1033G	TGCGCATCCTGGG	.	211.0	36.0	164.0	0.0	.	138
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19786418	19786418	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC24A2	NM_001193288	exon1	c.A447T	p.L149F	AATGGCTAAGGCT	.	33.0	27.0	31.0	0.0	.	517
SLC24A5	283652	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	48427084	48427084	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC24A5	NM_205850	exon5	c.T493A	p.S165T	CAGGTCTCAACAC	.	62.0	51.0	69.0	0.0	.	90
SLC36A3	285641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150663626	150663626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC36A3	NM_001145017	exon9	c.C1076A	p.T359N	TTGAGGGTGATGC	.	111.0	49.0	145.0	0.0	.	93
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18282139	18282139	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC39A12	NM_001145195	exon9	c.G1452A	p.V484V	GCACGTGGGTCAT	.	303.0	43.0	141.0	1.0	.	154
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145640635	145640635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC39A4	NM_130849	exon3	c.A643T	p.S215C	CCTCGCTGCTGTG	.	273.0	34.0	161.0	0.0	.	90
SLC52A1	55065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4936947	4936947	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_017986	exon3	c.T837A	p.G279G	GAAGGCACCATGG	.	84.0	72.0	108.0	0.0	.	.
SLC8A1	6546	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	40655701	40655701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC8A1	NM_001252624	exon1	c.T1720C	p.Y574H	TTTTATATGGAAC	.	100.0	57.0	109.0	1.0	.	93
SMCR7L	54471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39909580	39909580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SMCR7L	NM_019008	exon6	c.G644T	p.W215L	ACCTGTGGTCATG	.	72.0	29.0	112.0	0.0	.	90
SP7	121340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53723037	53723037	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_152860	exon2	c.T189A	p.A63A	TGGATAAGCATCC	.	63.0	24.0	67.0	0.0	.	.
SPATA31C1	441452	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	90535600	90535600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001145124	exon4	c.G778C	p.D260H	CCACTGGACACCG	.	191.0	50.0	167.0	0.0	.	.
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149529876	149529876	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_198455	exon109	c.A15290T	p.Q5097L	AGAGCCAGTGTGA	.	40.0	17.0	86.0	0.0	.	.
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	108999919	108999919	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SULT1C4	NM_006588	exon5	c.A568T	p.K190X	GAAGCCAAAGACA	.	93.0	55.0	82.0	0.0	.	22
TBR1	10716	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	162279937	162279937	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TBR1	NM_006593	exon6	c.C1248A	p.R416R	GCCGCGCTCGCAG	.	98.0	33.0	189.0	1.0	.	91
TBX20	57057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35293206	35293206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TBX20	NM_001077653	exon1	c.C26A	p.P9H	AGTTGGGGCTTGG	.	29.0	12.0	46.0	0.0	.	90
TCF7	6932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133480499	133480499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TCF7	NM_201634	exon9	c.C742T	p.P248S	GGCTCGCCTAAGA	.	107.0	38.0	218.0	0.0	.	90
TDRD5	163589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179562787	179562787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TDRD5	NM_173533	exon3	c.T425A	p.L142Q	AGGACCTGTTGGC	.	336.0	82.0	212.0	1.0	.	94
TEX35	84066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	178490806	178490806	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001170723	exon9	c.587-1G>T	.	AACCTAGCGCAGC	.	189.0	38.0	149.0	0.0	.	.
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155569180	155569180	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TIAM2	NM_012454	exon19	c.C3699T	p.P1233P	GAACCCCACCAAG	.	83.0	69.0	125.0	0.0	.	93
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82333727	82333727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TLE4	NM_007005	exon15	c.T1431A	p.H477Q	CCGGCATGCTCGC	.	156.0	36.0	168.0	0.0	.	524
TMEM245	23731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	111853343	111853343	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_032012	exon5	c.A1009T	p.R337X	TTCGTCTGCCCAG	.	90.0	57.0	66.0	0.0	.	.
TMTC3	160418	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88548085	88548085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TMTC3	NM_181783	exon4	c.A429T	p.R143S	TGGAAGAGCAGAA	.	26.0	5.0	40.0	0.0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	rs121912654		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon5	c.G469T	p.V157F	CGCGGACGCGGGT	.	82.0	61.0	199.0	2.0	.	70225
TRMT2A	27037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20102931	20102931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRMT2A	NM_001257994	exon4	c.G748A	p.G250R	CCACCCCGACGCC	.	58.0	21.0	75.0	0.0	.	153
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116599393	116599393	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRPS1	NM_014112	exon5	c.T2535G	p.N845K	CTCCACATTGGGA	.	117.0	19.0	51.0	0.0	.	229
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54306838	54306838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UNC13C	NM_001080534	exon1	c.T1738A	p.S580T	CTCCTGTCATCTT	.	35.0	28.0	44.0	0.0	.	51
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	35542098	35542098	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UNC5D	NM_080872	exon6	c.752-2A>T	.	TCTCTCAGTGAAT	.	85.0	16.0	109.0	0.0	.	96
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216420052	216420052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USH2A	NM_007123	exon13	c.A2684T	p.Q895L	CAGTGTTGAAAAT	.	238.0	62.0	184.0	1.0	.	115
USP44	84101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95927304	95927304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USP44	NM_032147	exon2	c.T729A	p.D243E	TACTTTATCTTTT	.	72.0	19.0	63.0	0.0	.	658
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	82834673	82834673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	VCAN	NM_004385	exon8	c.G5851A	p.E1951K	GCAAAAGAAGAAA	.	56.0	14.0	66.0	0.0	.	238
VWA5B2	90113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183957516	183957516	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_138345	exon15	c.T2432A	p.L811Q	ACATGCTGATGGA	.	99.0	24.0	105.0	1.0	.	.
WASL	8976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123332584	123332584	+	Silent	SNP	C	C	T	rs138588268	byfrequency;alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WASL	NM_003941	exon9	c.G1164A	p.P388P	GCCAGGCGGGGGC	.	26.0	10.0	40.0	0.0	C|0.999;A|0.001	90
WDR60	55112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158672638	158672638	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WDR60	NM_018051	exon5	c.A837G	p.K279K	TAGAAAAGAGAAA	.	189.0	72.0	213.0	0.0	.	92
WHSC1L1	54904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	38133854	38133854	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WHSC1L1	NM_023034	exon23	c.A4032C	p.A1344A	GTGGTATGCTTTG	.	321.0	80.0	248.0	1.0	.	658
XDH	7498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31571159	31571159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	XDH	NM_000379	exon28	c.A3122T	p.Q1041L	AGGCCTTGGCCCA	.	188.0	121.0	212.0	2.0	.	158
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	166960387	166960387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZBBX	NM_001199201	exon21	c.G2299A	p.D767N	TGAAATCTGGGAA	.	48.0	16.0	29.0	0.0	.	92
ZNF286A	57335	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	15619693	15619693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF286A	NM_020652	exon6	c.A655T	p.T219S	TTCCATACACTTG	.	96.0	49.0	86.0	1.0	.	90
ZNF470	388566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57088220	57088220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF470	NM_001001668	exon6	c.T423G	p.C141W	GAAATGTGAAGAC	.	63.0	25.0	76.0	2.0	.	92
ZNF581	51545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56156253	56156253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF581	NM_016535	exon2	c.A316T	p.S106C	CGACACAGCATCA	.	170.0	85.0	229.0	0.0	.	44
ZNF629	23361	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	30793273	30793273	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001080417	exon3	c.G2376A	p.Q792Q	TTTTTCCTGGGTG	.	23.0	9.0	30.0	1.0	.	.
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175003	57175003	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF835	NM_001005850	exon2	c.T1564A	p.C522S	GTTGACAGGTTTC	.	143.0	56.0	188.0	0.0	.	72
ZNF841	284371	broad.mit.edu;ucsc.edu	37	19	52570324	52570324	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001136499	exon7	c.A811T	p.R271X	ACACTCTGAAGGC	.	88.0	36.0	128.0	1.0	.	.
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23543010	23543010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF91	NM_003430	exon4	c.A2771T	p.H924L	GTAAGGTGTGAAG	.	28.0	9.0	22.0	0.0	.	90
