Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8990976	8990976	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	A2ML1	NM_144670	exon9	c.C900T	p.T300T	GGCCACCTTTGAC	.	111.0	50.0	197.0	1.0	.	93
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57250311	57250311	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AASDH	NM_181806	exon2	c.A155T	p.H52L	TCACAGTGTAACA	.	235.0	92.0	253.0	0.0	.	94
ABCA1	19	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107599794	107599794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA1	NM_005502	exon10	c.T1109C	p.I370T	CAGATAATGCGGG	.	65.0	28.0	70.0	1.0	.	1016
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215833480	215833480	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA12	NM_173076	exon38	c.T5742C	p.D1914D	TGTTATATCAAAA	.	122.0	44.0	109.0	0.0	.	99
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215914355	215914355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA12	NM_173076	exon6	c.T688A	p.S230T	CCTGGGAGAACTG	.	95.0	43.0	111.0	0.0	.	99
ABCA13	154664	ucsc.edu;bcgsc.ca	37	7	48634410	48634410	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA13	NM_152701	exon58	c.14744+1G>A	.	CCACAGGTGAGTT	.	182.0	73.0	214.0	2.0	.	521
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94568641	94568641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA4	NM_000350	exon5	c.T500G	p.L167R	TTAATGAGAAATA	.	97.0	33.0	113.0	0.0	.	162
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95858957	95858957	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCC4	NM_005845	exon8	c.C990A	p.I330I	CACGATGATTTTG	.	120.0	58.0	168.0	0.0	.	515
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183689367	183689367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCC5	NM_005688	exon11	c.A1745T	p.D582V	TCCAGATCGATGC	.	52.0	21.0	108.0	0.0	.	137
ABLIM2	84448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8029484	8029484	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABLIM2	NM_001130083	exon13	c.1267+2T>A	.	TGCCTTACCTCGG	.	121.0	42.0	106.0	0.0	.	47
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195112843	195112843	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACAP2	NM_012287	exon2	c.A87T	p.A29A	CAATTCTGCCACA	.	775.0	294.0	806.0	1.0	.	136
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61566056	61566056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACE	NM_000789	exon16	c.T2353G	p.W785G	CTGTTATGGGCAT	.	70.0	29.0	68.0	0.0	.	94
ACOXL	55289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111556610	111556610	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACOXL	NM_001142807	exon7	c.T480A	p.V160V	CATCGTTCCTGTC	.	118.0	62.0	115.0	0.0	.	90
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132075574	132075574	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACPP	NM_001099	exon10	c.A1013T	p.E338V	AGCACGAGCCGTA	.	99.0	26.0	158.0	0.0	.	91
ACR	49	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51178223	51178223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACR	NM_001097	exon3	c.T383C	p.I128T	AGAAAATCATCAT	.	126.0	58.0	156.0	0.0	.	90
ACSM5	54988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20432662	20432663	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACSM5	NM_017888	exon5	c.706_707insC	p.A236fs	ACCGGGGCCCCCA	.	66.0	29.0	86.0	0.0	.	70
ADAMTS13	11093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136324153	136324153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS13	NM_139025	exon29	c.T4135C	p.W1379R	CTCTACTGGGAGT	.	136.0	60.0	193.0	2.0	.	229
ADAMTS16	170690	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5242253	5242253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS16	NM_139056	exon17	c.A2611T	p.S871C	CAGCCCAGCTACA	.	45.0	19.0	74.0	1.0	.	275
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	128863439	128863439	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS19	NM_133638	exon5	c.1069-2A>T	.	GTTTTTAGGTATT	.	247.0	104.0	315.0	1.0	.	295
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178548746	178548746	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS2	NM_014244	exon21	c.A3094T	p.I1032F	CTGAGATGTTTCC	.	67.0	23.0	84.0	0.0	.	228
ADAMTS7	11173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79080627	79080627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS7	NM_014272	exon8	c.C1268T	p.A423V	GGAGCGGCGTCGT	.	84.0	41.0	121.0	1.0	.	226
ADAMTS7	11173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79080629	79080629	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS7	NM_014272	exon8	c.C1266T	p.D422D	AGCGGCGTCGTAC	.	85.0	41.0	120.0	1.0	.	226
ADCY5	111	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123051454	123051454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADCY5	NM_183357	exon4	c.T1475A	p.M492K	AGGGTCATGACCA	.	141.0	50.0	173.0	2.0	.	94
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	131955635	131955635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADCY8	NM_001115	exon4	c.C1315T	p.L439F	CGTTGAGCATCCT	.	175.0	77.0	116.0	0.0	.	157
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77896097	77896097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADNP2	NM_014913	exon4	c.A2801G	p.H934R	CCGTCCATTTGGT	.	78.0	31.0	57.0	0.0	.	140
ADRA1B	147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159344340	159344340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADRA1B	NM_000679	exon1	c.G428A	p.R143H	TCGATCGCTACAT	.	56.0	25.0	60.0	0.0	.	522
ADRBK1	156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67047308	67047308	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADRBK1	NM_001619	exon6	c.442-2A>T	.	TCCCTTAGCCATA	.	176.0	80.0	94.0	0.0	.	521
ADTRP	84830	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	11768527	11768527	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001143948	exon3	c.C297T	p.A99A	TCTGAAGGCAGTT	.	262.0	57.0	162.0	1.0	.	.
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147743516	147743516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AFF2	NM_002025	exon3	c.A268G	p.N90D	CATTCTAATCAGA	.	394.0	176.0	248.0	0.0	.	135
AFMID	125061	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76183458	76183458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AFMID	NM_001145526	exon1	c.G7C	p.D3H	ATGATGGATGTGT	.	100.0	43.0	107.0	1.0	.	136
AGAP3	116988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150839513	150839513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGAP3	NM_031946	exon16	c.A2065T	p.S689C	TGGGCCAGCCTGA	.	76.0	9.0	110.0	0.0	.	92
AGPAT5	55326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	6612657	6612657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGPAT5	NM_018361	exon7	c.G831A	p.M277I	ACATATGAGAAGA	.	294.0	20.0	540.0	0.0	.	90
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88292376	88292376	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGTPBP1	NM_015239	exon6	c.T411G	p.S137S	AAGAATAGAATGA	.	122.0	6.0	110.0	0.0	.	158
ALDH1A3	220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101438327	101438327	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALDH1A3	NM_000693	exon8	c.C820T	p.L274L	AGCAATCTGAAGC	.	165.0	22.0	181.0	1.0	.	651
ALOX12B	242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7989531	7989531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALOX12B	NM_001139	exon2	c.A155T	p.Q52L	GTGTACTGGCCCA	.	74.0	33.0	102.0	0.0	.	226
ALS2	57679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202593826	202593826	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALS2	NM_020919	exon14	c.G2661A	p.K887K	TGCTTCCTTCCTT	.	162.0	86.0	180.0	0.0	.	275
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61829030	61829030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANK3	NM_020987	exon37	c.C11609A	p.T3870N	GGTGAAGTGGCCT	.	354.0	202.0	252.0	0.0	.	107
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27306632	27306632	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANKRD26	NM_014915	exon30	c.A4305G	p.L1435L	CATAGATAACAAC	.	159.0	93.0	96.0	1.0	.	138
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93989111	93989111	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANKRD32	NM_032290	exon8	c.A1017T	p.I339I	GCACATATATAAT	.	449.0	201.0	488.0	0.0	.	92
ANKRD50	57182	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125592808	125592808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANKRD50	NM_020337	exon4	c.G1624T	p.D542Y	TTGAATCACACTG	.	141.0	58.0	144.0	1.0	.	90
ANKRD66	100287718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	46721651	46721651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001162435	exon4	c.T521A	p.I174N	CACAGATCTATGG	.	190.0	101.0	95.0	0.0	.	.
ANO8	57719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17441186	17441186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANO8	NM_020959	exon9	c.T1121C	p.L374P	AGCATGAGCAAGA	.	74.0	31.0	92.0	0.0	.	93
APEX2	27301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	55033578	55033578	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APEX2	NM_014481	exon6	c.A1267T	p.T423S	CTCATGACCCCGA	.	86.0	62.0	124.0	0.0	.	659
APLP1	333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36370026	36370026	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APLP1	NM_001024807	exon16	c.C1764A	p.I588I	GCTGATCATGGGA	.	21.0	9.0	44.0	0.0	.	92
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21229513	21229513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APOB	NM_000384	exon26	c.T10227A	p.S3409R	GTTATGACTACCC	.	109.0	48.0	103.0	0.0	.	175
ARC	23237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143694546	143694546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARC	NM_015193	exon1	c.G1087T	p.A363S	GCTCGGCCGCCTG	.	86.0	36.0	53.0	0.0	.	135
ARHGAP23	57636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36619393	36619393	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGAP23	NM_001199417	exon5	c.C384A	p.V128V	AAGCGTCATTGGG	.	107.0	39.0	136.0	0.0	.	205
ARHGAP5	394	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32560362	32560362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGAP5	NM_001173	exon2	c.A487G	p.I163V	TTATGCATTGATG	.	95.0	50.0	104.0	1.0	.	94
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8215862	8215862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF15	NM_025014	exon2	c.G505C	p.D169H	GATGCAGATGCCC	.	38.0	14.0	39.0	0.0	.	230
ARHGEF4	50649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131803692	131803692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF4	NM_015320	exon14	c.T2003C	p.L668P	TGGTGCTGGCGGA	.	50.0	13.0	57.0	0.0	.	292
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111938504	111938504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF7	NM_001113511	exon18	c.A2024G	p.K675R	TTAGTAAGAGCCC	.	78.0	8.0	80.0	0.0	.	232
ARL6IP1	23204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	18810100	18810100	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARL6IP1	NM_015161	exon2	c.G93A	p.L31L	AGCCATCAGCATC	.	120.0	48.0	132.0	0.0	.	90
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	19969151	19969151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARVCF	NM_001670	exon5	c.A479G	p.D160G	GCACCATCTGCAA	.	38.0	19.0	44.0	0.0	.	91
ASAH1	427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17933073	17933073	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASAH1	NM_001127505	exon2	c.A150T	p.S50S	ATAGGTTGATTTT	.	65.0	55.0	141.0	0.0	.	90
ASIC4	55515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220396495	220396495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_182847	exon2	c.G979T	p.G327W	CGCTATGGGAAGT	.	292.0	113.0	409.0	1.0	.	.
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176927577	176927577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASTN1	NM_004319	exon10	c.G1640A	p.S547N	CTCTTGCTGAGGG	.	278.0	72.0	206.0	0.0	.	319
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31023559	31023580	+	Frame_Shift_Del	DEL	AGGCTGACACTAGAGAAGCTGC	AGGCTGACACTAGAGAAGCTGC	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	AGGCTGACACTAGAGAAGCTGC	AGGCTGACACTAGAGAAGCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASXL1	NM_015338	exon12	c.3044_3065del	p.1015_1022del	GCAGTGAGGCTGA	.	61.0	24.0	75.0	0.0	.	2057
ASZ1	136991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117003770	117003770	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASZ1	NM_130768	exon13	c.T1308C	p.H436H	TTGTATATGAGTT	.	85.0	26.0	73.0	0.0	.	515
ATP2C2	9914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84459339	84459339	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATP2C2	NM_014861	exon11	c.920-2A>T	.	TTCCCCAGGTCTC	.	168.0	64.0	152.0	0.0	.	91
ATP6V1F	9296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	128505618	128505618	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATP6V1F	NM_001198909	exon3	c.G430T	p.E144X	ACTGCCGAAGACC	.	64.0	27.0	79.0	0.0	.	91
ATPBD4	89978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35830633	35830633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATPBD4	NM_001141972	exon3	c.A154T	p.T52S	CCACTGTCTGATA	.	157.0	70.0	151.0	0.0	.	90
AVPR1B	553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206230897	206230897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AVPR1B	NM_000707	exon2	c.C1030A	p.H344N	AACAGCCACCTGT	.	257.0	72.0	138.0	0.0	.	569
AZI1	22994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79170793	79170793	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AZI1	NM_014984	exon14	c.G1710C	p.V570V	CCGCATCACAGAC	.	240.0	109.0	240.0	0.0	.	136
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160803874	160803874	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	B3GALNT1	NM_001038628	exon8	c.T669C	p.H223H	AGAAATATGGGTT	.	69.0	25.0	84.0	0.0	.	91
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	666812	666812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	B4GALNT3	NM_173593	exon16	c.G2419T	p.D807Y	ATCAAAGACATGG	.	147.0	54.0	165.0	0.0	.	92
BAI1	575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	143558633	143558633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BAI1	NM_001702	exon4	c.T1216G	p.C406G	GCCGTGTGCCCAG	.	54.0	10.0	42.0	0.0	.	1129
BANK1	55024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	102783820	102783820	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BANK1	NM_017935	exon4	c.A762T	p.L254F	AGCTTTAGGTAAG	.	157.0	64.0	192.0	0.0	.	93
BCAT2	587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49309901	49309901	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BCAT2	NM_001190	exon3	c.G173C	p.G58A	GTCTTCCCAAACA	.	60.0	22.0	60.0	0.0	.	91
BDKRB2	624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96707662	96707662	+	Missense_Mutation	SNP	G	G	T	rs201791629	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BDKRB2	NM_000623	exon3	c.G997T	p.V333L	GTGTACGTGATCG	.	99.0	44.0	117.0	0.0	.	662
BICD1	636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32369200	32369200	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD1	NM_001714	exon2	c.C233G	p.S78C	CCTTCTCCATCCA	.	150.0	58.0	163.0	0.0	.	153
BICD1	636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32490444	32490444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD1	NM_001714	exon7	c.A2264G	p.Y755C	ATGAATATGTCAC	.	114.0	50.0	130.0	0.0	.	153
BICD2	23299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95477644	95477644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD2	NM_001003800	exon7	c.A2360T	p.Q787L	TTCTGCTGGATGG	.	81.0	35.0	85.0	0.0	.	226
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112993376	112993376	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BOC	NM_033254	exon9	c.A1389T	p.P463P	GTGTCCAGGAGAG	.	129.0	61.0	182.0	0.0	.	157
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92428482	92428482	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRDT	NM_001242806	exon2	c.T171C	p.D57D	TGTGGATGCTGTG	.	128.0	46.0	124.0	0.0	.	374
BRIX1	55299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34922851	34922851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRIX1	NM_018321	exon6	c.G488A	p.R163Q	GTTCTCGGCCCCT	.	381.0	136.0	419.0	0.0	.	90
BRPF3	27154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36169160	36169160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRPF3	NM_015695	exon2	c.A1061C	p.Q354P	GTGCACAGCGGGC	.	131.0	21.0	89.0	0.0	.	92
BTBD11	121551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108008836	108008836	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BTBD11	NM_001018072	exon7	c.1900-2A>C	.	GTTTATAGGTTGT	.	112.0	46.0	151.0	1.0	.	93
BTF3	689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72798773	72798773	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BTF3	NM_001037637	exon4	c.C348A	p.I116I	AGTGATCCACTTT	.	36.0	15.0	42.0	0.0	.	90
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56384317	56384317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BZRAP1	NM_004758	exon25	c.A4996G	p.K1666E	CATCCTTGTCCCC	.	43.0	17.0	48.0	0.0	.	229
C11orf65	160140	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108264018	108264018	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C11orf65	NM_152587	exon7	c.T648C	p.A216A	TTCAAAAGCTCTA	.	211.0	80.0	310.0	2.0	.	91
C16orf62	57020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19640035	19640035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C16orf62	NM_020314	exon17	c.A1727C	p.N576T	TTCTCAACGAAGC	.	82.0	26.0	107.0	0.0	.	69
C16orf93	90835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30771751	30771751	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C16orf93	NM_001195620	exon4	c.T323A	p.L108Q	CACCCTAGCTCCA	.	98.0	35.0	115.0	0.0	.	90
C16orf96	342346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4625242	4625242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001145011	exon5	c.A761T	p.Q254L	TGGCCCAGACCAC	.	26.0	6.0	31.0	0.0	.	.
C1orf101	257044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244681971	244681971	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf101	NM_173807	exon8	c.T507G	p.V169V	AAAAGTTTATTCT	.	623.0	137.0	387.0	0.0	.	154
C1orf173	127254	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75039093	75039093	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf173	NM_001002912	exon14	c.T2301C	p.Y767Y	CAGTGTATACGTT	.	102.0	43.0	130.0	1.0	.	94
C1orf227	149643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213009317	213009317	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf227	NM_001024601	exon2	c.A175C	p.T59P	TATCAGTAAAGGA	.	302.0	213.0	204.0	1.0	.	514
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34663030	34663030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf94	NM_001134734	exon2	c.A525T	p.R175S	CCCCAGAGCCTCC	.	104.0	46.0	88.0	0.0	.	90
C20orf194	25943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3274839	3274839	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C20orf194	NM_001009984	exon25	c.T2184C	p.P728P	CAGCACAGGAAGA	.	61.0	26.0	61.0	1.0	.	68
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20144825	20144825	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C20orf26	NM_015585	exon11	c.T1158A	p.A386A	CTCAGCTGCTTTT	.	60.0	19.0	77.0	0.0	.	94
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20269371	20269371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C20orf26	NM_015585	exon23	c.T2915C	p.I972T	ACGACATAGCCAT	.	166.0	66.0	218.0	0.0	.	94
C3orf30	152405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	118865983	118865983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C3orf30	NM_152539	exon1	c.A947G	p.E316G	CCACTGAACTAGC	.	136.0	57.0	130.0	0.0	.	92
C3orf36	80111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133647332	133647332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C3orf36	NM_025041	exon1	c.T316C	p.C106R	GTGAGCAAGGTGG	.	134.0	45.0	175.0	0.0	.	91
C3orf58	205428	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	143708572	143708572	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C3orf58	NM_173552	exon3	c.G1182A	p.R394R	TGGCCGGCTCGAG	.	142.0	69.0	140.0	2.0	.	91
C5orf22	55322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31534522	31534522	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C5orf22	NM_018356	exon2	c.T225C	p.F75F	ACTCTTTGGGTAA	.	92.0	23.0	111.0	0.0	.	92
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	37206332	37206332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C5orf42	NM_023073	exon17	c.A3116T	p.Q1039L	AACAGCTGGAAAG	.	306.0	30.0	343.0	0.0	.	94
C6orf25	80739	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31691511	31691511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C6orf25	NM_138277	exon2	c.T157C	p.C53R	CCGGCCTGCAAGG	.	90.0	16.0	75.0	1.0	.	90
C6orf47	57827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	31627616	31627616	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C6orf47	NM_021184	exon1	c.G109T	p.E37X	AATTCTCCGAGGA	.	247.0	47.0	163.0	0.0	.	91
C9orf50	375759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	132375462	132375471	+	Frame_Shift_Del	DEL	GAACAGAAGG	GAACAGAAGG	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GAACAGAAGG	GAACAGAAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C9orf50	NM_199350	exon6	c.1103_1112del	p.368_371del	TTCCATGAACAGA	.	87.0	25.0	106.0	0.0	.	91
CABP5	56344	broad.mit.edu;bcgsc.ca	37	19	48537602	48537602	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CABP5	NM_019855	exon5	c.T366A	p.D122E	CTCCCCATCTCCA	.	75.0	5.0	103.0	0.0	.	91
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu	37	3	53700544	53700544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA1D	NM_001128840	exon7	c.G1098A	p.W366X	GGGCTGGACAGAT	.	128.0	6.0	123.0	0.0	.	100
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181753861	181753861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA1E	NM_001205293	exon41	c.C5535A	p.H1845Q	GCCTCACCTATCC	.	202.0	42.0	152.0	0.0	.	95
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81714106	81714106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA2D1	NM_000722	exon7	c.G637T	p.G213C	CTAGGCCAGTGGC	.	263.0	114.0	302.0	0.0	.	96
CAMK2N1	55450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	20811760	20811760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CAMK2N1	NM_018584	exon1	c.C113G	p.A38G	TGCCCGGCGCCGA	.	46.0	17.0	47.0	0.0	.	93
CAMKMT	79823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	44933426	44933426	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CAMKMT	NM_024766	exon5	c.G438A	p.R146R	TTTCAGGGCCCTT	.	90.0	40.0	94.0	0.0	.	90
CAMSAP2	23271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200817745	200817745	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_203459	exon11	c.A1848T	p.S616S	TCCTTCAGAAGAT	.	219.0	42.0	80.0	0.0	.	.
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12858225	12858225	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CAND2	NM_001162499	exon10	c.T1794A	p.L598L	CCACCTTGTAGGC	.	123.0	105.0	149.0	1.0	.	72
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2968233	2968233	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CARD11	NM_032415	exon13	c.A1753T	p.S585C	CCCACCTGCGATG	.	28.0	9.0	30.0	0.0	.	870
CARTPT	9607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71016426	71016426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CARTPT	NM_004291	exon3	c.T335C	p.L112P	CCTTCCTCCTGAA	.	88.0	42.0	114.0	0.0	.	91
CASC1	55259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	25267703	25267703	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CASC1	NM_001082972	exon13	c.C1672T	p.Q558X	CATCTTGAATCAA	.	113.0	45.0	165.0	0.0	.	92
CATSPERB	79820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92126218	92126218	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CATSPERB	NM_024764	exon15	c.T1395C	p.F465F	AGAAACAAAAGTA	.	34.0	13.0	52.0	0.0	.	138
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14029727	14029727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CC2D1A	NM_017721	exon10	c.G1021T	p.V341L	CCAGAGGTGCCCC	.	167.0	64.0	211.0	0.0	.	90
CCDC105	126402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15122107	15122107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC105	NM_173482	exon1	c.A470G	p.Q157R	TGCGCCAGCGCGA	.	73.0	26.0	58.0	0.0	.	91
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57760018	57760018	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC135	NM_032269	exon13	c.C1797A	p.P599P	GAAGCCCGCGGAG	.	239.0	115.0	294.0	0.0	.	90
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	128434789	128434789	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC136	NM_001201372	exon4	c.G463T	p.E155X	CAGGCAGAGGTGT	.	222.0	83.0	314.0	1.0	.	24
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128450365	128450365	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC136	NM_022742	exon12	c.T1973G	p.L658W	AAGTGTTGGAGAA	.	158.0	69.0	149.0	0.0	.	24
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30554635	30554635	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001105528	exon21	c.T2399A	p.L800Q	CTCTGCAGCTGAC	.	43.0	15.0	48.0	0.0	.	.
CCDC36	339834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49293846	49293846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC36	NM_001135197	exon8	c.T916C	p.W306R	GCTGCATGGAATC	.	67.0	59.0	89.0	1.0	.	92
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112358178	112358178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC80	NM_199511	exon2	c.A575G	p.Q192R	CCTGCCTGGTGGA	.	130.0	63.0	126.0	0.0	.	92
CCDC83	220047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	85622367	85622411	+	In_Frame_Del	DEL	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC83	NM_173556	exon8	c.716_760del	p.239_254del	ATGCTATTCATGA	.	156.0	15.0	232.0	0.0	.	91
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6292239	6292239	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCKBR	NM_176875	exon5	c.812-2A>G	.	GTGCTCAGGGGCT	.	40.0	25.0	50.0	0.0	.	574
CCL14	6358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34311402	34311402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCL14	NM_032962	exon3	c.A214G	p.N72D	GGCTGTTGGTCTC	.	98.0	38.0	111.0	0.0	.	90
CCL25	6370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	8117950	8117950	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCL25	NM_001201359	exon2	c.T17A	p.L6Q	GGCTCCTGGCCTG	.	46.0	22.0	71.0	0.0	.	90
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2499281	2499281	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCNF	NM_001761	exon12	c.1219-2A>T	.	CTGTCTAGGTCCC	.	60.0	25.0	82.0	0.0	.	658
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	91229854	91229854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001145065	exon2	c.A419G	p.E140G	AAAAAGAGCACTC	.	126.0	56.0	131.0	0.0	.	.
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62112155	62112155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCT4	NM_001256721	exon2	c.G180C	p.M60I	CTTTACCATTTTA	.	105.0	51.0	124.0	0.0	.	92
CCT8	10694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30437364	30437364	+	Silent	SNP	A	A	C	rs143385323	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCT8	NM_006585	exon7	c.T687G	p.G229G	TACATCACCTTCG	.	75.0	38.0	90.0	0.0	A|0.999;G|0.001	90
CD101	9398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117556093	117556093	+	Missense_Mutation	SNP	G	G	T	rs201304832	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD101	NM_001256109	exon4	c.G907T	p.V303F	GAACTGGTTTGCC	.	108.0	42.0	136.0	0.0	G|0.999;A|0.001	94
CD200R1L	344807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112546319	112546319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD200R1L	NM_001008784	exon3	c.G325T	p.D109Y	GAAGGTCCGAATT	.	170.0	63.0	183.0	1.0	.	91
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35823773	35823773	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD22	NM_001185100	exon3	c.A358T	p.R120W	GGGCTGAGGATGG	.	76.0	26.0	89.0	0.0	.	526
CD69	969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9907785	9907785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD69	NM_001781	exon3	c.A260G	p.E87G	CAGTCCTCAGAGC	.	103.0	42.0	131.0	0.0	.	90
CDCA2	157313	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25319603	25319603	+	Missense_Mutation	SNP	G	G	T	rs149260399	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDCA2	NM_152562	exon4	c.G266T	p.R89L	GTAGACGACGTTC	.	53.0	40.0	120.0	1.0	G|1.000;A|0.000	90
CDCA7	83879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	174230178	174230178	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDCA7	NM_031942	exon7	c.895-2A>C	.	TAATGCAGGAAGA	.	65.0	34.0	80.0	0.0	.	91
CDHR1	92211	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85970915	85970915	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDHR1	NM_001171971	exon13	c.T1479A	p.A493A	GGTGGCTGTCACA	.	138.0	42.0	114.0	1.0	.	91
CDK2AP2	10263	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67274928	67274928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDK2AP2	NM_005851	exon3	c.A221G	p.Y74C	TCCGTGTAGGTGC	.	215.0	102.0	147.0	1.0	.	90
CDK9	1025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130551623	130551623	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDK9	NM_001261	exon7	c.A920T	p.D307V	ACAGCGATGACGC	.	82.0	38.0	87.0	1.0	.	521
CDON	50937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125891234	125891234	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDON	NM_016952	exon3	c.T258C	p.S86S	GTTGAGAGAAAGA	.	58.0	17.0	82.0	0.0	.	158
CEACAM1	634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43013273	43013273	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CEACAM1	NM_001712	exon9	c.A1569G	p.V523V	CTTTTTTACTTCT	.	126.0	61.0	154.0	0.0	.	515
CELF2	10659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	11207586	11207586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CELF2	NM_006561	exon2	c.G212A	p.G71E	CTTACGGAGCCGT	.	115.0	69.0	91.0	0.0	.	90
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109801366	109801366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CELSR2	NM_001408	exon2	c.G3623C	p.R1208P	AGGAGCGCCTATA	.	57.0	25.0	74.0	0.0	.	526
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13113583	13113583	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CEP192	NM_032142	exon41	c.7048-2A>T	.	TTTCGTAGGTCTC	.	70.0	32.0	62.0	0.0	.	27
CHD8	57680	broad.mit.edu;bcgsc.ca	37	14	21861848	21861848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHD8	NM_001170629	exon31	c.C6106T	p.P2036S	GGGTTGGTCGGCT	.	78.0	29.0	99.0	2.0	.	277
CHD9	80205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53337778	53337778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHD9	NM_025134	exon31	c.A5860T	p.N1954Y	CATCCAAATCCAG	.	185.0	82.0	208.0	1.0	.	272
CHRM5	1133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34355220	34355220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHRM5	NM_012125	exon3	c.T302G	p.L101R	GGAGTCTGGCTTG	.	138.0	54.0	172.0	0.0	.	91
CHSY3	337876	ucsc.edu;bcgsc.ca	37	5	129243821	129243821	+	Missense_Mutation	SNP	A	A	T	rs146180146	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHSY3	NM_175856	exon2	c.A854T	p.Y285F	CTCTCTACCTGGG	.	146.0	68.0	147.0	2.0	A|0.999;T|0.001	25
CHURC1-FNTB	100529261	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65527939	65527939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001202559	exon14	c.T1406G	p.V469G	ACAAGGTGATCCA	.	152.0	59.0	187.0	1.0	.	.
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42795109	42795109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CIC	NM_015125	exon10	c.C2189G	p.S730W	TGTATTCGGACAA	.	104.0	46.0	109.0	0.0	.	591
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120271925	120271925	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CIT	NM_001206999	exon6	c.T624A	p.A208A	GTGAACAGCCAAA	.	122.0	45.0	147.0	0.0	.	399
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143044041	143044041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLCN1	NM_000083	exon20	c.A2402T	p.E801V	CTGAAGAGGTGAG	.	64.0	30.0	118.0	0.0	.	156
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	38724410	38724410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLEC14A	NM_175060	exon1	c.G818A	p.C273Y	GTAGCACATTCGC	.	59.0	30.0	77.0	0.0	.	94
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10147839	10147839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLEC1B	NM_016509	exon5	c.A445T	p.I149F	CTTTGATGTACTC	.	40.0	13.0	55.0	0.0	.	90
CLN6	54982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68504126	68504126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLN6	NM_017882	exon4	c.A373T	p.S125C	GGATGCTGGCACC	.	57.0	30.0	105.0	0.0	.	91
CLVS2	134829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	123319264	123319264	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLVS2	NM_001010852	exon2	c.T342C	p.Y114Y	CCACTATGGCAGG	.	76.0	28.0	95.0	0.0	.	27
CNGA4	1262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6262882	6262882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CNGA4	NM_001037329	exon5	c.A1139T	p.D380V	AAGGAGACATTGG	.	88.0	34.0	133.0	1.0	.	91
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76509861	76509861	+	Missense_Mutation	SNP	G	G	A	rs150806968		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CNTNAP4	NM_138994	exon10	c.G1462A	p.G488S	GAACACGGTGGGG	.	75.0	29.0	112.0	0.0	G|1.000;A|0.000	70
COASY	80347	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40715081	40715081	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COASY	NM_001042532	exon3	c.G528C	p.L176L	GCGACTGGCCTCG	.	106.0	52.0	121.0	1.0	.	115
COG1	9382	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71196782	71196782	+	Missense_Mutation	SNP	G	G	A	rs149528257	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COG1	NM_018714	exon6	c.G1148A	p.R383Q	GAATCCGGGACGC	.	123.0	54.0	143.0	1.0	G|1.000;A|0.000	91
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103453234	103453234	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL11A1	NM_080629	exon30	c.A2493T	p.A831A	TGGGCCTGCTCGA	.	91.0	35.0	113.0	0.0	.	586
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94040245	94040245	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL1A2	NM_000089	exon22	c.T1242C	p.A414A	CAGAGCTGGCGTC	.	66.0	25.0	113.0	0.0	.	521
COL20A1	57642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61947981	61947981	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL20A1	NM_020882	exon21	c.T2601C	p.S867S	GCCCTCTGCCTTC	.	38.0	16.0	77.0	0.0	.	90
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139705929	139705929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL22A1	NM_152888	exon35	c.A2714C	p.Q905P	CCTTCCTGTCCCT	.	133.0	32.0	73.0	0.0	.	103
COL4A2	1284	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111158834	111158834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL4A2	NM_001846	exon46	c.T4475A	p.L1492Q	ACCTCCTGGTGAA	.	272.0	29.0	325.0	1.0	.	95
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227886777	227886777	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL4A4	NM_000092	exon44	c.C4203T	p.G1401G	TGAGGGGCCTCTC	.	247.0	105.0	240.0	1.0	.	142
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107464587	107464587	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL4A6	NM_001847	exon4	c.T165C	p.I55I	AATTCCAATTGGT	.	153.0	73.0	89.0	0.0	.	199
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130290136	130290136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL6A6	NM_001102608	exon6	c.T2876G	p.M959R	TAGCCATGGCAGG	.	193.0	80.0	240.0	0.0	.	76
CPEB1	64506	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	83226572	83226572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CPEB1	NM_030594	exon4	c.A544T	p.S182C	AGGGGCTGCTAGA	.	117.0	54.0	161.0	1.0	.	136
CPED1	79974	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	120781062	120781062	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001105533	exon14	c.G1881T	p.G627G	GGCAGGGCCAAGG	.	94.0	36.0	117.0	1.0	.	.
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207646133	207646133	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CR2	NM_001006658	exon10	c.A1587T	p.P529P	CCCACCACCCCCT	.	135.0	38.0	89.0	0.0	.	232
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126133122	126133122	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CRB2	NM_173689	exon7	c.A1790T	p.E597V	TCGGTGAGAACGT	.	32.0	7.0	28.0	1.0	.	91
CSHL1	1444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61987231	61987231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSHL1	NM_022579	exon5	c.T509A	p.L170H	TGCTTGAGGGTCT	.	150.0	71.0	137.0	0.0	.	90
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3889582	3889582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD1	NM_033225	exon4	c.T455A	p.L152Q	CCTTTCAGGATTT	.	50.0	41.0	117.0	0.0	.	86
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34174805	34174805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD2	NM_052896	exon22	c.T3340C	p.F1114L	CAGGAAAGTTGGG	.	97.0	34.0	152.0	1.0	.	103
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113988150	113988150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD3	NM_198123	exon7	c.G1258T	p.A420S	TATCTGCTGGATG	.	316.0	145.0	150.0	0.0	.	1132
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	113326785	113326785	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD3	NM_198123	exon48	c.T7422A	p.Y2474X	GTCAGGATATCCA	.	354.0	83.0	184.0	0.0	.	1132
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	67976717	67976717	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSPP1	NM_024790	exon1	c.A84T	p.R28R	GACGCGAGCCCGC	.	123.0	73.0	85.0	0.0	.	138
CTAG2	30848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153880820	153880820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CTAG2	NM_020994	exon2	c.C355A	p.P119T	CCCCTGGTCGGGG	.	178.0	88.0	134.0	0.0	.	131
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266127	41266150	+	In_Frame_Del	DEL	ACAGCTCCTTCTCTGAGTGGTAAA	ACAGCTCCTTCTCTGAGTGGTAAA	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	ACAGCTCCTTCTCTGAGTGGTAAA	ACAGCTCCTTCTCTGAGTGGTAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	CTNNB1,NS,carcinoma,-1	CTNNB1	NM_001098209	exon3	c.124_147del	p.42_49del	ACTACCACAGCTC	.	130.0	63.0	196.0	0.0	.	24361
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117407202	117407202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CTTNBP2	NM_033427	exon9	c.G2807T	p.G936V	AGCCCTCCGTGCC	.	76.0	32.0	72.0	0.0	.	94
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43155101	43155101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CUL9	NM_015089	exon6	c.T1505C	p.L502P	GGGAGCTGCTTTT	.	187.0	25.0	110.0	0.0	.	529
DACH2	117154	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	85906101	85906101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DACH2	NM_053281	exon4	c.A703T	p.N235Y	GCTATGAACACTC	.	295.0	142.0	183.0	1.0	.	136
DACT2	168002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168709146	168709146	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DACT2	NM_214462	exon4	c.T1291A	p.C431S	GGACACAGCTGTT	.	123.0	55.0	112.0	0.0	.	226
DARC	2532	broad.mit.edu;bcgsc.ca	37	1	159176132	159176132	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DARC	NM_001122951	exon1	c.C909G	p.P303P	TACGCCCCTGCTC	.	147.0	101.0	96.0	2.0	.	659
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159176146	159176146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DARC	NM_001122951	exon1	c.T923C	p.L308P	TCGCCCTATTCTG	.	160.0	37.0	104.0	0.0	.	659
DAZAP1	26528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1434882	1434882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DAZAP1	NM_018959	exon12	c.G1195C	p.V399L	CACAACGTGCAAG	.	80.0	29.0	96.0	0.0	.	153
DBN1	1627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176886227	176886227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DBN1	NM_080881	exon12	c.T1004C	p.I335T	GTGGGGATGGGAG	.	26.0	6.0	26.0	0.0	.	587
DBNL	28988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44096470	44096470	+	Missense_Mutation	SNP	C	C	A	rs145524590	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DBNL	NM_001122956	exon5	c.C442A	p.R148S	AGTGGCCGCTTCC	.	90.0	13.0	81.0	0.0	C|1.000;T|0.000	91
DCAF10	79269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37861138	37861138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCAF10	NM_024345	exon7	c.G1313T	p.C438F	CCTAGTGTACTTG	.	34.0	8.0	48.0	0.0	.	115
DCAF12L2	340578	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	125298937	125298937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCAF12L2	NM_001013628	exon1	c.G971T	p.G324V	TGAGAGCCCACAG	.	185.0	85.0	115.0	1.0	.	113
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50923756	50923756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCC	NM_005215	exon18	c.A2767T	p.T923S	ATGGTAACAAAAA	.	145.0	60.0	184.0	0.0	.	225
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155156385	155156385	+	Missense_Mutation	SNP	T	T	A	rs147174513		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCHS2	NM_017639	exon25	c.A8054T	p.D2685V	AGCTGGTCTGAGT	.	101.0	44.0	94.0	0.0	T|1.000;A|0.000	94
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155226268	155226268	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCHS2	NM_017639	exon16	c.A4011G	p.Q1337Q	GACTTCTTGAATT	.	95.0	37.0	99.0	0.0	.	94
DCN	1634	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	91546950	91546950	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCN	NM_001920	exon6	c.T669A	p.L223L	TTCCGTAAGGGAA	.	82.0	37.0	100.0	0.0	.	555
DDX10	1662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108709284	108709284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DDX10	NM_004398	exon14	c.G2077A	p.E693K	ACTGATGAAGGGG	.	186.0	62.0	236.0	0.0	.	1145
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140285439	140285439	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DENND2A	NM_015689	exon3	c.T1195C	p.L399L	AATTCAAGACACA	.	134.0	51.0	144.0	0.0	.	138
DENND3	22898	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142146872	142146872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DENND3	NM_014957	exon2	c.C127A	p.P43T	ACCCTGCCGCAGC	.	98.0	51.0	68.0	1.0	.	91
DEPDC1B	55789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	59899225	59899225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DEPDC1B	NM_001145208	exon9	c.G1235T	p.R412I	TGGACTCTTCGTA	.	69.0	22.0	81.0	0.0	.	91
DGAT1	8694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145540683	145540684	+	Splice_Site	INS	-	-	CC	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_012079	exon16	c.1248+2->GG	.	GCACTGACCTCGT	.	114.0	57.0	68.0	0.0	.	.
DGKK	139189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50125538	50125538	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DGKK	.	.	.	.	GTCCAGAGAAATT	.	81.0	73.0	101.0	0.0	.	227
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182836133	182836133	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DHX9	NM_001357	exon14	c.A1512T	p.G504G	TCGAGGAATCAGT	.	167.0	35.0	117.0	0.0	.	92
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95560494	95560494	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DICER1	NM_177438	exon25	c.5096-1G>T	.	AACAATCTGAGGG	.	47.0	17.0	60.0	0.0	.	961
DIEXF	27042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210015611	210015611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DIEXF	NM_014388	exon9	c.A1487G	p.H496R	CAAAGCATTTGAT	.	163.0	44.0	93.0	0.0	.	91
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231829654	231829654	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DISC1	NM_001164541	exon2	c.A150T	p.T50T	CTCGACAGGGCCT	.	134.0	25.0	93.0	0.0	.	91
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55629758	55629758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DLGAP5	NM_014750	exon13	c.C1584G	p.I528M	AAGTTTGATCAGA	.	47.0	14.0	72.0	0.0	.	92
DMBT1	1755	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124339354	124339354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DMBT1	NM_007329	exon10	c.C940A	p.P314T	AGCTGCCCCCACA	.	150.0	43.0	155.0	2.0	.	494
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225270296	225270296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH14	NM_001373	exon20	c.C3182T	p.T1061I	TGGTAACAGAGTT	.	462.0	102.0	261.0	0.0	.	23
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7644139	7644139	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH2	NM_020877	exon10	c.G1518A	p.R506R	CAAGCGGACTTAT	.	52.0	18.0	51.0	0.0	.	102
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7660453	7660453	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH2	NM_020877	exon12	c.T1949A	p.L650Q	AGCGGCTGCTGTT	.	73.0	29.0	146.0	0.0	.	102
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196729249	196729249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH7	NM_018897	exon41	c.A7130T	p.H2377L	TCTTCATGCCATT	.	143.0	67.0	165.0	2.0	.	102
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196913052	196913052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH7	NM_018897	exon4	c.A218T	p.E73V	AATGGTTCTGGAC	.	59.0	25.0	61.0	0.0	.	102
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38994404	38994404	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH8	NM_001206927	exon92	c.T13797A	p.V4599V	TGAAGTTCTGAGA	.	81.0	20.0	61.0	0.0	.	615
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11696953	11696953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH9	NM_001372	exon42	c.A8195G	p.Q2732R	AAATCCAGACAGA	.	102.0	40.0	111.0	0.0	.	168
DNASE1L1	1774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153633398	153633398	+	Silent	SNP	C	C	T	rs150301252	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNASE1L1	NM_006730	exon3	c.G162A	p.V54V	CTGCAGCACCATG	.	224.0	114.0	132.0	1.0	C|1.000;T|0.000	554
DPCR1	135656	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30917770	30917770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DPCR1	NM_080870	exon2	c.A1529G	p.E510G	CCAATGAGAAAAC	.	182.0	52.0	120.0	1.0	.	90
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	116593732	116593732	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DPP10	NM_020868	exon22	c.1951-1G>T	.	CCCCCAGGGTTAT	.	125.0	46.0	127.0	0.0	.	142
DPP4	1803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162895528	162895528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DPP4	NM_001935	exon7	c.G423T	p.Q141H	AATCAGCTGCCTG	.	164.0	58.0	180.0	0.0	.	93
DSCAML1	57453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117387274	117387274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSCAML1	NM_020693	exon8	c.T1871A	p.V624E	TTCTGCACGTCAG	.	83.0	20.0	130.0	1.0	.	159
DSE	29940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116757673	116757673	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSE	NM_001080976	exon6	c.A2042T	p.Q681L	ACTCTCAGCAACT	.	118.0	55.0	110.0	0.0	.	91
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7556029	7556029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSP	NM_004415	exon2	c.G249T	p.M83I	CTTGATGCGAGCA	.	183.0	38.0	134.0	2.0	.	518
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7581019	7581019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSP	NM_004415	exon23	c.G4596T	p.E1532D	TCAGGAGCAAGAA	.	275.0	73.0	115.0	1.0	.	518
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7581656	7581656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSP	NM_004415	exon23	c.A5233G	p.K1745E	AGTGATAAAAATG	.	330.0	72.0	197.0	1.0	.	518
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56497806	56497806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DST	NM_001723	exon14	c.G2040T	p.Q680H	AACTTGCTGATGT	.	136.0	26.0	94.0	0.0	.	523
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	56328485	56328485	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DST	NM_015548	exon81	c.C14896T	p.R4966X	GGGGTCGGAAAGC	.	168.0	30.0	83.0	0.0	.	523
DTX2	113878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	76112438	76112438	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DTX2	NM_001102596	exon2	c.A882T	p.P294P	GCCCCCAGGATCC	.	143.0	55.0	154.0	0.0	.	524
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102991298	102991298	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DYNC2H1	NM_001377	exon7	c.T1122G	p.N374K	ATATAATCCATAT	.	135.0	58.0	136.0	1.0	.	68
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103026215	103026215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DYNC2H1	NM_001377	exon25	c.A3729T	p.K1243N	AGCCAAAGCTGCC	.	125.0	49.0	139.0	0.0	.	68
DZIP1	22873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96237036	96237036	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DZIP1	NM_198968	exon22	c.G2478T	p.V826V	ATTTAGCACATGA	.	123.0	50.0	181.0	0.0	.	92
DZIP1L	199221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137787119	137787119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DZIP1L	NM_173543	exon13	c.C1706A	p.P569Q	GGGGGTGGCTCTG	.	55.0	18.0	100.0	2.0	.	92
ECSIT	51295	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11618657	11618657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ECSIT	NM_016581	exon6	c.A805G	p.S269G	CGGGACTCTGGAT	.	60.0	21.0	59.0	2.0	.	91
EDN1	1906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12290873	12290873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EDN1	NM_001955	exon1	c.T11G	p.L4W	ATTATTTGCTCAT	.	156.0	37.0	80.0	1.0	.	91
EEF1E1	9521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	8097609	8097609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EEF1E1	NM_001135650	exon2	c.T179C	p.L60S	CCCAGCAAATATT	.	227.0	60.0	150.0	0.0	.	186
EFNB2	1948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	107145427	107145427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EFNB2	NM_004093	exon5	c.G963A	p.M321I	CGGGGGCATCTCC	.	32.0	9.0	32.0	0.0	.	91
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110904598	110904598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EGF	NM_001963	exon16	c.A2392G	p.N798D	CTAAAGAACCAAG	.	111.0	56.0	121.0	0.0	.	524
ELF5	2001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34515128	34515128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ELF5	NM_198381	exon3	c.A283T	p.S95C	GGCCACTGATGTT	.	95.0	45.0	117.0	0.0	.	227
ELMOD1	55531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107526788	107526788	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_018712	exon11	c.A828G	p.T276T	GCAAACATTCTGT	.	59.0	30.0	84.0	0.0	.	.
EMD	2010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153607910	153607910	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMD	NM_000117	exon1	c.G66T	p.P22P	CATCCCGCACGGG	.	100.0	46.0	77.0	0.0	.	130
EMILIN1	11117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	27302028	27302028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMILIN1	NM_007046	exon1	c.A95G	p.Y32C	GCCTCTACACAGG	.	47.0	16.0	70.0	0.0	.	91
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14772862	14772862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMR3	NM_032571	exon4	c.G268A	p.G90R	AACTTCCTTCGAC	.	109.0	47.0	122.0	0.0	.	528
ENO2	2026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7026812	7026812	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENO2	NM_001975	exon6	c.G378C	p.R126R	TGAGCGGGAACTG	.	43.0	16.0	50.0	0.0	.	226
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120628551	120628551	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENPP2	NM_001130863	exon8	c.T731A	p.L244Q	CCTCGCAGATGAA	.	195.0	93.0	71.0	0.0	.	292
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132006562	132006562	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENPP3	NM_005021	exon13	c.A1179T	p.I393I	CAGAATAAACTTC	.	186.0	88.0	211.0	0.0	.	95
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40257983	40257983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENTHD1	NM_152512	exon3	c.G379T	p.V127F	TGATGACTTGCTT	.	194.0	81.0	209.0	0.0	.	93
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5397253	5397253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPB41L3	NM_012307	exon18	c.C2645A	p.A882E	GGCTGTGCTGCAG	.	81.0	24.0	90.0	0.0	.	95
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16459692	16459692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA2	NM_004431	exon11	c.A2036T	p.E679V	ACGCCCTCTAGGC	.	47.0	25.0	52.0	0.0	.	1419
EPHA5	2044	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66356415	66356415	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA5	NM_004439	exon5	c.C1082G	p.P361R	TTCCGAGGAGCAG	.	174.0	52.0	207.0	1.0	.	1430
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467379	66467379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA5	NM_004439	exon3	c.A890T	p.E297V	TTTTTCTCTTCAT	.	55.0	23.0	58.0	0.0	.	1430
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	66467935	66467935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA5	NM_004439	exon3	c.T334A	p.W112R	AAAGCCAGTTATT	.	50.0	22.0	63.0	0.0	.	1430
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	96585699	96585699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA6	NM_001080448	exon2	c.G416A	p.G139E	TACTGGGAGAGCT	.	506.0	202.0	553.0	2.0	.	1561
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142563375	142563375	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHB6	NM_004445	exon8	c.C1092T	p.A364A	AGAGGCCCCCTGC	.	44.0	13.0	97.0	0.0	.	1489
EPHX4	253152	broad.mit.edu;bcgsc.ca	37	1	92495733	92495733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHX4	NM_173567	exon1	c.T97C	p.S33P	TGCGCCTCCATCC	.	102.0	36.0	93.0	2.0	.	90
EPHX4	253152	broad.mit.edu;bcgsc.ca	37	1	92495735	92495735	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHX4	NM_173567	exon1	c.C99A	p.S33S	CGCCTCCATCCAC	.	103.0	36.0	90.0	1.0	.	90
EPRS	2058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	220156702	220156702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPRS	NM_004446	exon22	c.A3129G	p.I1043M	GCCACTTATGTCA	.	466.0	97.0	289.0	1.0	.	92
ERCC4	2072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	14020498	14020498	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ERCC4	NM_005236	exon3	c.A469T	p.K157X	AAAAACAAACGTG	.	80.0	31.0	87.0	0.0	.	665
EVC2	132884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5642427	5642427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EVC2	NM_147127	exon10	c.G1284T	p.M428I	AGCACTCATTTTT	.	139.0	77.0	115.0	1.0	.	155
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5578129	5578129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EVC2	NM_147127	exon18	c.C3110T	p.A1037V	TGGGCTGCCTCCT	.	72.0	37.0	62.0	0.0	.	155
EXOSC10	5394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11141273	11141273	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EXOSC10	NM_002685	exon11	c.A1303T	p.S435C	CGTAGCTGAGCAT	.	128.0	55.0	161.0	0.0	.	116
FAM129B	64855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130279260	130279260	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM129B	NM_022833	exon8	c.C849A	p.A283A	CGCCTTGGCCTGC	.	57.0	21.0	81.0	0.0	.	68
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137284750	137284750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001101800	exon17	c.A1988G	p.K663R	ATGACCTTGGGTT	.	77.0	35.0	63.0	0.0	.	.
FAM13C	220965	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61014197	61014197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM13C	NM_198215	exon11	c.A1243C	p.K415Q	CTTGCTTAGTTAC	.	116.0	36.0	109.0	2.0	.	70
FAM150A	389658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53451056	53451056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM150A	NM_207413	exon4	c.T337C	p.C113R	TAGCACATCTTTT	.	701.0	160.0	521.0	0.0	.	68
FAM163A	148753	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	179783192	179783192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM163A	NM_173509	exon5	c.T372G	p.F124L	CTCCTTTGCTCCC	.	356.0	37.0	229.0	0.0	.	91
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50749396	50749396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM186A	NM_001145475	exon4	c.T1219C	p.Y407H	CTGTATATGAAAT	.	69.0	33.0	75.0	0.0	.	68
FAM208B	54906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5789185	5789185	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_017782	exon15	c.G3801T	p.V1267V	GTCTGTGAGTAGA	.	132.0	13.0	90.0	0.0	.	.
FAM47A	158724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	34149063	34149063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM47A	NM_203408	exon1	c.T1333A	p.C445S	CCTCACAACGATC	.	131.0	114.0	173.0	2.0	.	134
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177245534	177245534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM5B	NM_021165	exon6	c.T976C	p.S326P	CAGGACTCCTGGG	.	691.0	69.0	495.0	0.0	.	28
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	190067337	190067337	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM5C	NM_199051	exon8	c.A2112T	p.L704L	GATCTCTAGTAGT	.	303.0	67.0	147.0	0.0	.	228
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156590341	156590341	+	Missense_Mutation	SNP	G	G	T	rs200982218	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM71B	NM_130899	exon2	c.C935A	p.A312E	GCCAGCGCTGTGG	.	53.0	29.0	52.0	0.0	G|0.999;A|0.000	96
FAM71F2	346653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128323061	128323061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001012454	exon5	c.A778G	p.K260E	AGCTACAAGATAC	.	77.0	39.0	111.0	0.0	.	.
FAM74A3	728495	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	40716298	40716298	+	RNA	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM74A3	.	.	.	.	AAGCACCTATTTA	.	247.0	48.0	254.0	0.0	.	23
FAM83B	222584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	54805800	54805800	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM83B	NM_001010872	exon5	c.T2031C	p.P677P	AGATCCTGGAAAT	.	534.0	118.0	279.0	2.0	.	96
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54804890	54804890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM83B	NM_001010872	exon5	c.A1121T	p.Q374L	TACGTCAGTTTCA	.	409.0	95.0	239.0	0.0	.	96
FAM98B	283742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38773693	38773693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM98B	NM_001042429	exon7	c.A930C	p.E310D	AAATGAATTGATG	.	150.0	60.0	149.0	0.0	.	515
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242380941	242380941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FARP2	NM_014808	exon13	c.C1381T	p.L461F	CAGCCCCTCGGGC	.	89.0	40.0	96.0	0.0	.	93
FASTK	10922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150774867	150774867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FASTK	NM_006712	exon6	c.G1040A	p.G347D	GGGGTGCCTGTGG	.	88.0	36.0	101.0	0.0	.	359
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150930189	150930189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAT2	NM_001447	exon7	c.C4540T	p.L1514F	AGCCGAGGTCCAA	.	68.0	29.0	79.0	0.0	.	96
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92498202	92498202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAT3	NM_001008781	exon5	c.T4142C	p.V1381A	AAATTGTAGGGGT	.	115.0	46.0	143.0	0.0	.	73
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45970507	45970507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FBLN1	NM_006486	exon15	c.C1814T	p.T605I	TGCCTACCTTCCG	.	57.0	22.0	82.0	0.0	.	515
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	48741033	48741033	+	Missense_Mutation	SNP	G	G	T	rs145082616	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FBN1	NM_000138	exon46	c.C5603A	p.T1868K	CCAACTGTGTCAA	.	69.0	7.0	60.0	0.0	G|1.000;A|0.000	92
FCGR2A	2212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161479767	161479767	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FCGR2A	NM_001136219	exon4	c.C522T	p.I174I	CTCCATCCCACAA	.	1276.0	240.0	853.0	1.0	.	91
FCRL6	343413	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159779343	159779343	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FCRL6	NM_001004310	exon5	c.A756G	p.S252S	CCACTCAGCTCCC	.	144.0	99.0	100.0	1.0	.	93
FER1L6	654463	ucsc.edu;bcgsc.ca	37	8	125103740	125103740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FER1L6	NM_001039112	exon34	c.G4468A	p.D1490N	AAGCTGGATGGAC	.	380.0	182.0	228.0	2.0	.	100
FERMT3	83706	ucsc.edu;bcgsc.ca	37	11	63978540	63978540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FERMT3	NM_031471	exon4	c.G411T	p.E137D	CCCCGAGGAGCTG	.	45.0	4.0	99.0	0.0	.	23
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	14860937	14860937	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FGD5	NM_152536	exon1	c.C359A	p.S120X	AGGATTCAGTGGC	.	187.0	158.0	204.0	1.0	.	231
FGFBP1	9982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15938116	15938116	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FGFBP1	NM_005130	exon3	c.A140T	p.Q47L	TTAATCTGGGTGT	.	219.0	128.0	149.0	0.0	.	90
FHAD1	114827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15707218	15707218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FHAD1	NM_052929	exon28	c.G3661A	p.A1221T	TGCAACGCAAGGT	.	86.0	40.0	75.0	0.0	.	69
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152280562	152280562	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FLG	NM_002016	exon3	c.A6800T	p.H2267L	CCATGATGGTTTC	.	367.0	71.0	245.0	0.0	.	106
FLG2	388698	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152328113	152328113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FLG2	NM_001014342	exon3	c.T2149C	p.S717P	ATCCAGATGTCTG	.	290.0	55.0	160.0	2.0	.	151
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152329823	152329823	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FLG2	NM_001014342	exon3	c.T439A	p.S147T	CCCTTGAGTGCCC	.	388.0	272.0	266.0	0.0	.	151
FMNL1	752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43311537	43311537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FMNL1	NM_005892	exon6	c.C584A	p.S195Y	CCTCCTCCGTGCC	.	63.0	11.0	89.0	0.0	.	91
FMOD	2331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203316593	203316593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FMOD	NM_002023	exon2	c.A806G	p.K269R	AGCAGCTTGGGCG	.	183.0	36.0	111.0	0.0	.	137
FN3KRP	79672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80674715	80674715	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FN3KRP	NM_024619	exon1	c.C84T	p.G28G	CCAGGGCCGGAGC	.	449.0	206.0	586.0	2.0	.	115
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	159654905	159654905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FNDC1	NM_032532	exon11	c.G3361T	p.A1121S	GCAGGGGCAGGTG	.	53.0	32.0	44.0	0.0	.	138
FOXB2	442425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	79635447	79635447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FOXB2	NM_001013735	exon1	c.T877A	p.S293T	TTGGCGTCCGTCA	.	40.0	20.0	43.0	0.0	.	205
FOXF1	2294	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	86544400	86544400	+	Nonsense_Mutation	SNP	C	C	A	rs121909336		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FOXF1	NM_001451	exon1	c.C225A	p.Y75X	GATCTACCAGTTC	.	121.0	43.0	136.0	0.0	.	226
FOXN2	3344	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48602463	48602463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FOXN2	NM_002158	exon7	c.A1177G	p.I393V	CAAGAAATTGATG	.	100.0	44.0	101.0	1.0	.	226
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	74833633	74833633	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001112808	exon15	c.A1609T	p.K537X	AAGATTAAAAGCA	.	332.0	114.0	379.0	0.0	.	.
FPGT-TNNI3K	100526835	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74901765	74901765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001112808	exon20	c.C2077A	p.H693N	TACAGTCACAATA	.	135.0	57.0	161.0	1.0	.	.
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14859459	14859459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FREM1	NM_144966	exon5	c.T353G	p.I118R	GTTTCTATGAAGG	.	119.0	49.0	178.0	0.0	.	138
FRMD5	84978	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44202176	44202176	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FRMD5	NM_032892	exon5	c.T331A	p.Y111N	CTAAATACCTGGA	.	45.0	15.0	61.0	1.0	.	91
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41739273	41739273	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FRS3	NM_006653	exon8	c.565-2A>T	.	TGGGACTGGGGAA	.	37.0	11.0	16.0	0.0	.	92
FTHL17	53940	ucsc.edu;bcgsc.ca	37	X	31089830	31089830	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FTHL17	NM_031894	exon1	c.A241T	p.I81F	GGCAGATGTGGCC	.	131.0	112.0	145.0	2.0	.	130
FURIN	5045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	91423153	91423153	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FURIN	NM_002569	exon12	c.C1315T	p.Q439X	CTGGCCCAGAATT	.	122.0	56.0	174.0	0.0	.	1083
FZD10	11211	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	130648002	130648002	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FZD10	NM_007197	exon1	c.A515C	p.Q172P	GGCCGCAGCGGCC	.	99.0	42.0	98.0	1.0	.	658
FZD1	8321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	90895564	90895564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FZD1	NM_003505	exon1	c.A1369G	p.I457V	CCGGCCATCAAGA	.	56.0	20.0	57.0	0.0	.	658
FZD3	7976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28385435	28385435	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FZD3	NM_017412	exon5	c.G1158C	p.G386G	AGTTGGGGTTTCT	.	69.0	50.0	142.0	0.0	.	659
GABBR1	2550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29599361	29599361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABBR1	NM_021904	exon3	c.A101T	p.H34L	GGCGGGTGTATGA	.	160.0	37.0	136.0	1.0	.	521
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29591692	29591692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABBR1	NM_001470	exon7	c.C767A	p.A256D	CTAGCAGCCTCAG	.	278.0	57.0	215.0	0.0	.	521
GABPB1	2553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50578223	50578223	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABPB1	NM_002041	exon8	c.A1077T	p.P359P	TTATTTTGGATGA	.	104.0	45.0	130.0	0.0	.	153
GABRA5	2558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27114454	27114454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABRA5	NM_001165037	exon3	c.T59A	p.I20N	TTTGTATTTCCAT	.	132.0	45.0	139.0	0.0	.	91
GATM	2628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45668899	45668899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GATM	NM_001482	exon2	c.A188C	p.D63A	GGGCAGTCCTTGG	.	100.0	37.0	99.0	0.0	.	90
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136029632	136029632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GBGT1	NM_021996	exon7	c.C376G	p.Q126E	AGGACTGGATGAA	.	33.0	11.0	37.0	0.0	.	90
GBP6	163351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89848365	89848365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GBP6	NM_198460	exon8	c.A1295G	p.H432R	GAGGGCACAAGCT	.	169.0	54.0	200.0	0.0	.	92
GDPD1	284161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57351120	57351120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GDPD1	NM_182569	exon10	c.A931T	p.N311Y	TTACATAACTTTT	.	65.0	25.0	44.0	0.0	.	90
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154311783	154311783	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GEMIN5	NM_015465	exon4	c.T537C	p.I179I	GATGTCAATTATC	.	158.0	70.0	155.0	0.0	.	228
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61957713	61957713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GH2	NM_002059	exon5	c.T622C	p.C208R	AGCGGCACTGCAC	.	91.0	11.0	114.0	0.0	.	93
GIN1	54826	ucsc.edu;bcgsc.ca	37	5	102444366	102444366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GIN1	NM_017676	exon2	c.G46A	p.A16T	AATATGCAATCTG	.	81.0	30.0	105.0	2.0	.	92
GIT2	9815	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110421240	110421240	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GIT2	NM_057170	exon6	c.A561G	p.A187A	ATATACTGCCAAT	.	168.0	72.0	171.0	1.0	.	226
GJD2	57369	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35045130	35045130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GJD2	NM_020660	exon2	c.A515G	p.K172R	AGCTCCTTAACCT	.	169.0	67.0	233.0	2.0	.	90
GK5	256356	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141884551	141884551	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GK5	NM_001039547	exon16	c.A1503G	p.P501P	CTTCTGTGGCTTG	.	143.0	60.0	158.0	1.0	.	90
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121743964	121743964	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	GLI2,NS,carcinoma,0	GLI2	NM_005270	exon12	c.G2067T	p.G689G	GCCCGGGAGCCTG	.	138.0	66.0	160.0	0.0	.	954
GLI4	2738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144351615	144351615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GLI4	NM_138465	exon2	c.G49T	p.V17F	TCCCCTGTCAGTC	.	151.0	68.0	98.0	0.0	.	91
GLP1R	2740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39040691	39040691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GLP1R	NM_002062	exon6	c.T563A	p.I188N	CCTTCATCCTGCG	.	146.0	42.0	92.0	0.0	.	659
GPATCH2	55105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	217783743	217783743	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPATCH2	NM_018040	exon6	c.1019-1G>T	.	GGAAACCTGTAAA	.	124.0	35.0	61.0	0.0	.	91
GPC4	2239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132458433	132458433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPC4	NM_001448	exon3	c.G451T	p.V151L	CCACCACGTAGTA	.	200.0	91.0	118.0	0.0	.	226
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46976727	46976727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR110	NM_153840	exon11	c.A2444T	p.Q815L	AGATTCTGGCTGT	.	457.0	122.0	275.0	0.0	.	71
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135488040	135488040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR112	NM_153834	exon23	c.A8844T	p.L2948F	ATTCTTACTTGGC	.	157.0	26.0	76.0	0.0	.	183
GPR113	165082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26540974	26540974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR113	NM_001145168	exon2	c.T196G	p.C66G	TGGGGCAGGCAGG	.	96.0	45.0	128.0	2.0	.	94
GPR116	221395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46826559	46826559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR116	NM_015234	exon17	c.G3081T	p.L1027F	GGCTGCCAAGCTC	.	148.0	42.0	100.0	1.0	.	91
GPR123	84435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134910562	134910562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR123	NM_001083909	exon3	c.C88A	p.L30I	ATGCTGCTCTGCC	.	54.0	32.0	44.0	0.0	.	90
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	131456098	131456098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR133	NM_198827	exon4	c.A283G	p.S95G	TGCATCAGCAAGC	.	77.0	34.0	85.0	0.0	.	191
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107114661	107114661	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR22	NM_005295	exon3	c.T156A	p.I52I	AGAAATTGTGTTG	.	195.0	83.0	174.0	0.0	.	92
GPR45	11250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105858393	105858393	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR45	NM_007227	exon1	c.C78A	p.S26S	GGGGTCCACCCAG	.	121.0	50.0	132.0	0.0	.	154
GPR89B	51463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147408746	147408746	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR89B	NM_016334	exon2	c.A48T	p.L16L	GATACTATTTTTT	.	383.0	87.0	249.0	0.0	.	158
GPSM1	26086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139231978	139231978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPSM1	NM_015597	exon5	c.A659G	p.Y220C	CCCACTATTTGTT	.	157.0	73.0	189.0	1.0	.	90
GRIA2	2891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158142912	158142912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIA2	NM_000826	exon2	c.A182G	p.H61R	CACCCCACATCGA	.	125.0	55.0	140.0	2.0	.	515
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6550307	6550307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001145118	exon10	c.C1586A	p.P529H	ATCAGGGGAAGAG	.	60.0	29.0	64.0	0.0	.	.
GRIK3	2899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	37315910	37315910	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIK3	NM_000831	exon10	c.1326+2T>C	.	GCTCTTACCAGCA	.	45.0	16.0	53.0	0.0	.	158
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42510881	42510881	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIK5	NM_002088	exon15	c.T1953C	p.P651P	CTCCACAGGCACC	.	49.0	17.0	59.0	0.0	.	90
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14561754	14561754	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIP2	.	.	.	.	ATGGACAGGATGT	.	76.0	55.0	86.0	1.0	.	69
GRK7	131890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141497734	141497734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRK7	NM_139209	exon1	c.G608T	p.G203V	GTTTTGGGGAGGT	.	170.0	70.0	193.0	1.0	.	522
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86416372	86416372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM3	NM_000840	exon3	c.A1264G	p.M422V	GATGCTATGAAGA	.	89.0	9.0	135.0	0.0	.	528
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34003458	34003458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM4	NM_000841	exon9	c.A2429T	p.Q810L	GCCGACTGCGAGG	.	377.0	69.0	228.0	0.0	.	525
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88338049	88338049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM5	NM_000842	exon5	c.C1231A	p.L411I	TGTGGAGCCCATA	.	117.0	52.0	140.0	0.0	.	949
GRXCR2	643226	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145239349	145239349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRXCR2	NM_001080516	exon3	c.T694A	p.C232S	CAGGGCACCTCAG	.	213.0	11.0	258.0	0.0	.	22
GSDMC	56169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	130778031	130778031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GSDMC	NM_031415	exon4	c.T413C	p.L138S	GGATCCAACAGTT	.	117.0	29.0	73.0	0.0	.	93
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27472839	27472839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GTF3C1	NM_001520	exon37	c.G6162T	p.K2054N	CCTTGGCTTTCTC	.	45.0	18.0	68.0	0.0	.	94
GTSE1	51512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46719148	46719148	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GTSE1	NM_016426	exon8	c.G1494T	p.T498T	GTGCACGTCAGTT	.	57.0	23.0	82.0	0.0	.	187
HAS1	3036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52219555	52219555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HAS1	NM_001523	exon4	c.G1015T	p.D339Y	GCCGGTCATCCCC	.	103.0	38.0	163.0	0.0	.	92
HDAC9	9734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	18705951	18705951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HDAC9	NM_178425	exon11	c.A1583G	p.N528S	GTGGCAACAGCAC	.	110.0	39.0	111.0	1.0	.	227
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	31641123	31641123	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HECTD1	NM_015382	exon8	c.C1276T	p.Q426X	ACCTTTGACCTCT	.	312.0	121.0	352.0	1.0	.	570
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112688787	112688787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001109662	exon24	c.A3302T	p.K1101I	AAAAGTTTGGACC	.	127.0	58.0	158.0	0.0	.	.
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197183894	197183894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HECW2	NM_020760	exon9	c.G1720A	p.D574N	GCTGATCTACCTC	.	101.0	39.0	108.0	0.0	.	668
HELZ2	85441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62203527	62203527	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001037335	exon2	c.A212T	p.D71V	GCCTGGTCGAAGG	.	83.0	23.0	79.0	0.0	.	.
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33358716	33358716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HIPK3	NM_001048200	exon4	c.G1317T	p.M439I	AGATATGTCTCAT	.	60.0	27.0	91.0	0.0	.	336
HIST1H2BJ	8970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27100194	27100194	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HIST1H2BJ	NM_021058	exon1	c.G336T	p.V112V	CTCGGACACGGCG	.	174.0	34.0	93.0	0.0	.	90
HIST1H3D	8351	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26197264	26197264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HIST1H3D	NM_003530	exon2	c.T215G	p.V72G	TCACGGACTAGAC	.	339.0	64.0	192.0	1.0	.	90
HKR1	284459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37854185	37854185	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HKR1	NM_181786	exon6	c.A1488T	p.P496P	GAAGCCATTTGTA	.	128.0	50.0	103.0	0.0	.	92
HLA-DMB	3109	broad.mit.edu;bcgsc.ca	37	6	32905064	32905064	+	Silent	SNP	A	A	G	rs147622332		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HLA-DMB	NM_002118	exon3	c.T507C	p.N169N	GTCTCCATTGGGC	.	450.0	74.0	256.0	1.0	A|1.000;G|0.000	90
HMMR	3161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	162900512	162900512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HMMR	NM_001142556	exon9	c.A853G	p.K285E	TTATCTAAACAAG	.	313.0	136.0	349.0	2.0	.	90
HPS4	89781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26860234	26860234	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HPS4	NM_022081	exon11	c.C1362G	p.P454P	GGGAATGGGGGCT	.	52.0	20.0	82.0	0.0	.	90
HRH2	3274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	175112498	175112498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HRH2	NM_001131055	exon3	c.A1163T	p.H388L	ACATTCATCCAAT	.	207.0	87.0	284.0	1.0	.	91
HRH4	59340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22057255	22057255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HRH4	NM_021624	exon3	c.T902C	p.L301S	GGAGATTAGCCAA	.	142.0	55.0	172.0	0.0	.	92
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15746215	15746215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HSPA13	NM_006948	exon5	c.A1139C	p.K380T	AGTATTTTCTGAA	.	149.0	71.0	153.0	0.0	.	226
HSPA1L	3305	broad.mit.edu;ucsc.edu	37	6	31779395	31779395	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HSPA1L	NM_005527	exon2	c.G355T	p.E119X	TTTCCTCAGGGTA	.	563.0	140.0	332.0	2.0	.	230
ICAM5	7087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10404581	10404581	+	Missense_Mutation	SNP	G	G	T	rs147604357	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ICAM5	NM_003259	exon7	c.G1673T	p.R558L	ACCCTCGGGGCTC	.	41.0	19.0	52.0	0.0	G|0.999;A|0.000	153
IFFO1	25900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6659920	6659920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFFO1	NM_001039670	exon3	c.G871A	p.A291T	TCAGTGCCAGCTC	.	85.0	24.0	121.0	2.0	.	68
IFI35	3430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41166312	41166312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFI35	NM_005533	exon7	c.G863T	p.G288V	AGTCAGGCTAGGG	.	52.0	29.0	80.0	0.0	.	91
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	91174557	91174558	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFIT5	NM_012420	exon1	c.2_3insGA	p.M1fs	CCATCATGAGGTA	.	78.0	45.0	40.0	0.0	.	90
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34715660	34715660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFNAR1	NM_000629	exon4	c.A463T	p.M155L	AGTGTTATGTGGG	.	113.0	48.0	98.0	0.0	.	91
IFT81	28981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110565247	110565247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFT81	NM_014055	exon2	c.A62G	p.Y21C	AGAACTATAATTT	.	249.0	83.0	249.0	0.0	.	91
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151160801	151160801	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IGSF10	NM_178822	exon5	c.A5934G	p.P1978P	CTTGGATGGTAAC	.	94.0	38.0	108.0	0.0	.	102
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133807314	133807314	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IGSF9B	NM_014987	exon5	c.C636T	p.S212S	CTGAATGCTGTAC	.	83.0	28.0	104.0	0.0	.	68
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42171857	42171857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IKBKB	NM_001556	exon9	c.A710G	p.Q237R	TGCGGCAGAAGAG	.	95.0	61.0	165.0	0.0	.	1164
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50467947	50467947	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IKZF1	NM_006060	exon8	c.C1182T	p.C394C	CAGCTGCCAAGAC	.	87.0	43.0	115.0	0.0	.	1242
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88705453	88705453	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IL17C	NM_013278	exon2	c.T71A	p.L24H	CCTCCCTCAGGGG	.	71.0	8.0	79.0	0.0	.	90
IL17RC	84818	ucsc.edu;bcgsc.ca	37	3	9974301	9974301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IL17RC	NM_153461	exon17	c.A1610G	p.K537R	TCCACAAGCGCTG	.	151.0	129.0	214.0	2.0	.	92
IL18RAP	8807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103040730	103040730	+	Missense_Mutation	SNP	A	A	T	rs138125296	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IL18RAP	NM_003853	exon5	c.A435T	p.L145F	GATTTTAGAAGTT	.	177.0	79.0	161.0	0.0	A|1.000;G|0.000	95
IMPA2	3613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12009936	12009936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IMPA2	NM_014214	exon3	c.C285A	p.S95R	CCACAGCCCGACG	.	92.0	42.0	101.0	0.0	.	226
IMPG1	3617	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76744355	76744355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IMPG1	NM_001563	exon3	c.C451A	p.L151M	GATCCAGGTGCTC	.	102.0	30.0	105.0	1.0	.	93
INPP4B	8821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	142949992	142949992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	INPP4B	NM_003866	exon27	c.G2718T	p.M906I	GAAAGCCATCAGC	.	89.0	47.0	115.0	0.0	.	228
INSRR	3645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156816454	156816454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	INSRR	NM_014215	exon8	c.A1667T	p.Q556L	GGCTCCTGGGTGC	.	223.0	40.0	152.0	1.0	.	1403
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	1513873	1513873	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001080453	exon41	c.G5760T	p.P1920P	CACGTGCGGCTGC	.	21.0	11.0	19.0	0.0	.	.
IRAK3	11213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66638446	66638446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRAK3	NM_007199	exon9	c.T1068A	p.D356E	AACAGATGTCTAC	.	101.0	35.0	118.0	0.0	.	1379
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44223324	44223324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRGC	NM_019612	exon2	c.C614A	p.A205D	GGGAGGCCGGCGT	.	34.0	14.0	33.0	0.0	.	70
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	3600372	3600372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRX1	NM_024337	exon2	c.C1310A	p.P437Q	CGCTCCCAGGTAC	.	37.0	17.0	37.0	0.0	.	228
ISLR2	57611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74426996	74426996	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ISLR2	NM_001130138	exon4	c.C1901G	p.P634R	AGGCCCCTGACCC	.	89.0	40.0	112.0	0.0	.	90
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	68609680	68609680	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ITGA11	NM_001004439	exon21	c.G2638T	p.E880X	CACACTCAATGCT	.	101.0	39.0	130.0	0.0	.	538
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37774280	37774280	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ITGA9	NM_002207	exon19	c.A2145C	p.S715S	GAGGTCAAAGTCA	.	74.0	63.0	92.0	0.0	.	715
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33646238	33646238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ITPR3	NM_002224	exon29	c.A3689G	p.Q1230R	CGCACCAGTTCCT	.	289.0	82.0	191.0	1.0	.	1085
IVL	3713	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152883220	152883220	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IVL	NM_005547	exon2	c.T947A	p.L316Q	AGCACCTGGAGCA	.	313.0	140.0	211.0	2.0	.	93
KAT6A	7994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41798813	41798813	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001099412	exon16	c.A2586G	p.P862P	CCGAGATGGCTGG	.	33.0	24.0	84.0	1.0	.	.
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127642796	127642796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KBTBD12	NM_207335	exon1	c.A892T	p.S298C	GATGCCAGTTTTT	.	131.0	60.0	162.0	0.0	.	23
KBTBD8	84541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	67049479	67049479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KBTBD8	NM_032505	exon2	c.C91T	p.H31Y	CCCTTCCATGCTT	.	271.0	93.0	208.0	0.0	.	587
KCNA2	3737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111146974	111146974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNA2	NM_001204269	exon3	c.A431T	p.E144V	TGAAACTCATTTT	.	95.0	45.0	82.0	0.0	.	91
KCNA3	3738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111216207	111216207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNA3	NM_002232	exon1	c.G1225T	p.V409F	GGATGACCCCAAT	.	70.0	28.0	92.0	0.0	.	95
KCNAB1	7881	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155838579	155838579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNAB1	NM_172160	exon1	c.T179A	p.L60Q	GTCAACTGGCTCT	.	132.0	53.0	138.0	1.0	.	94
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	211192594	211192594	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNH1	NM_172362	exon6	c.T563A	p.L188Q	AGCTGTAGGACCT	.	58.0	29.0	25.0	0.0	.	94
KCNK18	338567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118969679	118969679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNK18	NM_181840	exon3	c.A1024G	p.I342V	TTCTCCATTTATA	.	132.0	36.0	107.0	0.0	.	91
KCNQ3	3786	broad.mit.edu;bcgsc.ca	37	8	133141583	133141583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNQ3	NM_004519	exon15	c.G2545T	p.G849C	TGGAGCCGCTGGG	.	166.0	46.0	78.0	2.0	.	138
KCP	375616	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	128543812	128543812	+	RNA	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCP	.	.	.	.	GGCCTCAGCACTG	.	157.0	61.0	168.0	0.0	.	68
KCTD1	284252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	24126984	24126984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCTD1	NM_001142730	exon1	c.A1517T	p.Q506L	GGCGGCTGGGGGC	.	26.0	15.0	26.0	0.0	.	91
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55973948	55973948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KDR	NM_002253	exon10	c.C1368G	p.I456M	CCAGTGGATGTGA	.	115.0	43.0	154.0	0.0	.	2298
KERA	11081	broad.mit.edu;bcgsc.ca	37	12	91445249	91445249	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KERA	NM_007035	exon3	c.A933C	p.A311A	TCGTTCTGCAGGC	.	56.0	27.0	52.0	2.0	.	91
KIAA1024	23251	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79749155	79749155	+	Missense_Mutation	SNP	C	C	A	rs3750000	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1024	NM_015206	exon2	c.C666A	p.N222K	CGAAAACGAGTCC	.	138.0	59.0	131.0	1.0	C|0.960;T|0.040	183
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24833078	24833078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1217	NM_019590	exon19	c.A4879T	p.R1627W	ATCGCTAGGTCTC	.	119.0	64.0	84.0	0.0	.	98
KIAA1549L	25758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33628353	33628353	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_012194	exon13	c.A4155T	p.A1385A	ATCGGCAGTCCTC	.	118.0	47.0	119.0	0.0	.	.
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32137297	32137297	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_018169	exon4	c.A3408G	p.K1136K	TCAGAAAGAAGAG	.	90.0	35.0	101.0	0.0	.	.
KIAA1586	57691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56917944	56917944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1586	NM_020931	exon4	c.A647G	p.H216R	AAGCCCATGGTAA	.	260.0	61.0	128.0	0.0	.	44
KIAA1804	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233515084	233515084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1804	NM_032435	exon9	c.A2332T	p.T778S	CCTCCCACAAGCC	.	299.0	64.0	193.0	2.0	.	523
KIF18A	81930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	28119476	28119476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF18A	NM_031217	exon2	c.G19T	p.D7Y	ACAGGTCTTCCTC	.	155.0	64.0	138.0	2.0	.	92
KIF1B	23095	broad.mit.edu;ucsc.edu	37	1	10363425	10363425	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF1B	NM_183416	exon21	c.A2182T	p.K728X	GATTCCAAGTGGG	.	334.0	141.0	381.0	2.0	.	93
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34263160	34263160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF24	NM_194313	exon9	c.G1454T	p.C485F	CGGATACATTCCT	.	121.0	46.0	157.0	0.0	.	22
KIF26A	26153	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104640574	104640574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF26A	NM_015656	exon11	c.C2120A	p.A707D	CGCCAGCCCAGCA	.	88.0	41.0	127.0	1.0	.	24
KIF26B	55083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245772585	245772585	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF26B	NM_018012	exon8	c.A1669T	p.I557F	ACCATGATCGGAA	.	509.0	105.0	331.0	1.0	.	25
KIF4A	24137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69572476	69572476	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF4A	NM_012310	exon14	c.A1458G	p.A486A	GGCTGCAGCCATT	.	152.0	77.0	104.0	0.0	.	134
KIF6	221458	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39387773	39387773	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF6	NM_145027	exon15	c.T1761A	p.S587S	GGCTTCAGAAAAT	.	170.0	37.0	98.0	1.0	.	713
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55564702	55564702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIT	NM_000222	exon3	c.C590A	p.S197X	TGCTGTCGGAAAA	.	75.0	34.0	100.0	0.0	.	20166
KITLG	4254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88910260	88910260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KITLG	NM_003994	exon5	c.A371G	p.K124R	GATTTTTTTAGAT	.	44.0	22.0	69.0	0.0	.	227
KLC2	64837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66029592	66029592	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KLC2	NM_001134775	exon4	c.460-2A>T	.	CTTCCCAGGAGGA	.	109.0	45.0	115.0	0.0	.	90
KLF17	128209	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44595431	44595431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KLF17	NM_173484	exon2	c.C488T	p.S163F	CGGCTTCCACTGG	.	91.0	29.0	86.0	1.0	.	92
KLHL29	114818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	23918605	23918605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KLHL29	NM_052920	exon9	c.T1655A	p.L552Q	GGGACCTGGTGAA	.	64.0	21.0	93.0	0.0	.	70
KRT23	25984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39084545	39084545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRT23	NM_015515	exon6	c.A866G	p.E289G	TTCAGTTCGTGGA	.	57.0	28.0	89.0	0.0	.	91
KRT34	3885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39538297	39538297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRT34	NM_021013	exon1	c.G328A	p.A110T	AGCTGGCCAGGCG	.	179.0	69.0	175.0	0.0	.	90
KRT5	3852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52913903	52913903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRT5	NM_000424	exon1	c.T178A	p.Y60N	TGCCATAGCCACC	.	68.0	26.0	81.0	0.0	.	90
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39464117	39464117	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001146182	exon1	c.C1389T	p.C463C	TTTTTTGCAATCC	.	103.0	32.0	124.0	0.0	.	.
KRTAP29-1	100533177	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39459055	39459055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001257309	exon1	c.C49T	p.P17S	TGGTGGGCACAGC	.	102.0	36.0	94.0	0.0	.	.
KRTAP4-6	81871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39296524	39296524	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_030976	exon1	c.C216G	p.T72T	GCAGGTGGTCTGA	.	45.0	19.0	47.0	0.0	.	.
KRTAP5-1	387264	broad.mit.edu;bcgsc.ca	37	11	1605913	1605913	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP5-1	NM_001005922	exon1	c.T567C	p.S189S	CCCACAAGAACCG	.	103.0	14.0	129.0	2.0	.	44
KRTAP5-3	387266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1629498	1629498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP5-3	NM_001012708	exon1	c.T118A	p.C40S	AGCAGCAGACAGG	.	93.0	39.0	126.0	0.0	.	92
KRTAP5-6	440023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1718512	1718532	+	In_Frame_Del	DEL	GGCTGTGGGGGCTGTGGCTCT	GGCTGTGGGGGCTGTGGCTCT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GGCTGTGGGGGCTGTGGCTCT	GGCTGTGGGGGCTGTGGCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP5-6	NM_001012416	exon1	c.37_57del	p.13_19del	GGCTCCGGCTGTG	.	142.0	44.0	159.0	0.0	.	90
KTN1	3895	ucsc.edu;bcgsc.ca	37	14	56079277	56079277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KTN1	NM_004986	exon2	c.A511G	p.K171E	AAGTCTAAAAATG	.	231.0	94.0	221.0	2.0	.	1147
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209789949	209789949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAMB3	NM_000228	exon22	c.A3249T	p.Q1083H	ATACTTTTGTTTT	.	281.0	50.0	205.0	0.0	.	156
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107706917	107706917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAMB4	NM_007356	exon20	c.A2575T	p.S859C	GGCAGCTGGGAAA	.	117.0	48.0	125.0	0.0	.	140
LAPTM5	7805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31215394	31215394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAPTM5	NM_006762	exon2	c.C90G	p.I30M	GCTCATGATCTGG	.	59.0	27.0	102.0	0.0	.	226
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88441277	88441277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LDB3	NM_007078	exon4	c.C406A	p.P136T	GGCACCCCGGAGC	.	63.0	19.0	35.0	0.0	.	92
LEPREL1	55214	broad.mit.edu;mdanderson.org	37	3	189838134	189838134	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LEPREL1	NM_018192	exon1	c.G387A	p.G129G	GGGGCCCCCGAGG	.	24.0	8.0	25.0	0.0	.	155
LEPREL1	55214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	189690681	189690681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LEPREL1	NM_018192	exon11	c.T1681C	p.C561R	TTCGGCAGACCAT	.	250.0	106.0	268.0	0.0	.	155
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	63990332	63990334	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LGSN	NM_016571	exon4	c.1122_1124del	p.374_375del	TTCAGGTCTTTCC	.	78.0	39.0	75.0	0.0	.	227
LHX3	8022	broad.mit.edu;bcgsc.ca	37	9	139089345	139089345	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LHX3	NM_014564	exon6	c.A1035C	p.P345P	GGTGTCTGGGTAC	.	63.0	31.0	69.0	2.0	.	91
LILRA3	11026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803142	54803142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRA3	NM_006865	exon4	c.C535T	p.R179W	TGGCCCGGGATGA	.	130.0	47.0	174.0	1.0	.	91
LILRA3	11026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803146	54803146	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRA3	NM_006865	exon4	c.A531G	p.S177S	CCGGGATGACCCA	.	129.0	45.0	166.0	1.0	.	91
LILRA3	11026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	54803147	54803147	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRA3	NM_006865	exon4	c.C530G	p.S177X	CGGGATGACCCAC	.	129.0	46.0	167.0	0.0	.	91
LILRB3	11025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54721082	54721082	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRB3	NM_001081450	exon13	c.T1779C	p.D593D	GGTCACATCCTGG	.	166.0	80.0	176.0	0.0	.	93
LIPI	149998	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15516949	15516949	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LIPI	NM_198996	exon9	c.A1353G	p.P451P	CCTTTCTGGGTAT	.	229.0	80.0	229.0	1.0	.	70
LMBRD1	55788	hgsc.bcm.edu;bcgsc.ca	37	6	70411411	70411411	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LMBRD1	NM_018368	exon11	c.1007delG	p.G336fs	TCTATTCCAGCTG	.	242.0	99.0	213.0	0.0	.	91
LMX1B	4010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129455877	129455877	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LMX1B	NM_001174146	exon5	c.A816T	p.A272A	AAGAGCAAAGGTA	.	88.0	37.0	145.0	0.0	.	90
LOC284933	0	bcgsc.ca;mdanderson.org	37	22	48935257	48935257	+	RNA	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	.	.	.	.	CTCTTGGCATCTG	.	67.0	30.0	107.0	1.0	.	.
LOC389458	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5112652	5112652	+	RNA	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	.	.	.	.	CAGAAAGCCGGGG	.	93.0	41.0	131.0	0.0	.	.
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356398	42356398	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRFN5	NM_152447	exon3	c.C570A	p.T190T	GGGGACCTTCTCC	.	91.0	38.0	86.0	0.0	.	97
LRIT1	26103	ucsc.edu;bcgsc.ca	37	10	85992413	85992413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRIT1	NM_015613	exon4	c.G1142T	p.R381M	ACATGCCTGGCCA	.	193.0	111.0	160.0	2.0	.	90
LRRC46	90506	broad.mit.edu;bcgsc.ca	37	17	45911898	45911898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRC46	NM_033413	exon3	c.G224A	p.G75E	TGCAAGGGGTAAC	.	90.0	7.0	113.0	1.0	.	91
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51022208	51022208	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRC4B	NM_001080457	exon3	c.C762T	p.S254S	GCGCAGGCTGGTG	.	66.0	21.0	77.0	0.0	.	205
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85518207	85518207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRIQ1	NM_001079910	exon17	c.G3917T	p.S1306I	CAAGCAGTATTCC	.	76.0	32.0	70.0	0.0	.	95
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74621535	74621535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRIQ3	NM_001105659	exon4	c.G589A	p.E197K	TTTCCTCTTCATA	.	347.0	135.0	327.0	0.0	.	92
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101523888	101523888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRK1	NM_024652	exon4	c.G417T	p.L139F	GGAATTGCTTGAG	.	65.0	24.0	89.0	0.0	.	602
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101595197	101595197	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRK1	NM_024652	exon27	c.C4101A	p.A1367A	AATAGCCTACCAG	.	125.0	57.0	156.0	0.0	.	602
LRRK2	120892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40760830	40760830	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRK2	NM_198578	exon50	c.G7413A	p.L2471L	CATGCTGGTATTG	.	360.0	140.0	429.0	2.0	.	533
LRTM1	57408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	54958771	54958771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRTM1	NM_020678	exon2	c.A479T	p.Q160L	TCAAGCTGCTGAA	.	140.0	123.0	187.0	0.0	.	90
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41133127	41133127	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LTBP4	.	.	.	.	TGAGGACGATGGT	.	44.0	13.0	45.0	0.0	.	93
LY9	4063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160784465	160784465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LY9	NM_001261457	exon4	c.T986C	p.I329T	TGAAGATAGAGGA	.	265.0	163.0	164.0	1.0	.	91
LYPD5	284348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44306498	44306498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LYPD5	NM_001031749	exon1	c.G35T	p.C12F	AAGAGGCAGAGCA	.	38.0	15.0	68.0	0.0	.	90
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049699	36049699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAB21L1	NM_005584	exon1	c.C577A	p.P193T	GCCAGGGGATGTG	.	34.0	12.0	55.0	0.0	.	92
MAB21L2	10586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151504564	151504564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAB21L2	NM_006439	exon1	c.T383C	p.I128T	GTAAGATCCGCTC	.	58.0	20.0	55.0	0.0	.	91
MAEL	84944	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	166974609	166974609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAEL	NM_032858	exon8	c.A820C	p.M274L	GTGGCCATGTGGG	.	407.0	20.0	249.0	1.0	.	91
MAGEB5	347541	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	X	26235588	26235588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAGEB5	NM_001271752	exon2	c.T170C	p.M57T	TCAAAATGAAACA	.	132.0	111.0	124.0	0.0	.	109
MAGEC3	139081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140969387	140969387	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAGEC3	NM_138702	exon4	c.C714T	p.G238G	TTTTGGCATTTCC	.	141.0	60.0	89.0	0.0	.	555
MAGEE2	139599	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	75004449	75004449	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAGEE2	NM_138703	exon1	c.T438C	p.V146V	ATCAATAACTCTC	.	112.0	49.0	74.0	1.0	.	132
MALT1	10892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56414872	56414872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MALT1	NM_006785	exon17	c.A2273G	p.H758R	CATTCCATGGTGT	.	95.0	30.0	95.0	1.0	.	660
MAML3	55534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140651774	140651774	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAML3	NM_018717	exon4	c.C2115A	p.S705S	CACGGAGGACTGC	.	112.0	65.0	97.0	0.0	.	455
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210557752	210557752	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAP2	NM_002374	exon7	c.T858A	p.P286P	ATCTCCTGGCCCT	.	141.0	60.0	165.0	0.0	.	591
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53878895	53878895	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAP3K12	NM_001193511	exon6	c.C1084T	p.L362L	CGGGCAGATGGAG	.	123.0	52.0	126.0	0.0	.	604
MARS2	92935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198570872	198570872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MARS2	NM_138395	exon1	c.A743T	p.E248V	TGGACGAGGAGCT	.	106.0	43.0	122.0	2.0	.	92
MBL2	4153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	54528161	54528161	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MBL2	NM_000242	exon4	c.T483G	p.S161S	GGCCACAGAGGCC	.	153.0	46.0	144.0	0.0	.	91
MC5R	4161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13826194	13826194	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MC5R	NM_005913	exon1	c.A430C	p.I144L	GTCACCATCTTCT	.	84.0	32.0	105.0	0.0	.	526
MCF2	4168	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138701843	138701843	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MCF2	NM_001171876	exon10	c.T890A	p.L297Q	TTTAATAGAAATT	.	784.0	347.0	430.0	2.0	.	227
MCM9	254394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119136767	119136767	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MCM9	NM_017696	exon12	c.A2652G	p.P884P	TCTGTCTGGGCTA	.	47.0	17.0	84.0	0.0	.	515
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	116446847	116446847	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MED13L	NM_015335	exon10	c.A1371G	p.S457S	TAAAGATGAAGAT	.	123.0	41.0	122.0	0.0	.	232
MEFV	4210	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3306451	3306451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEFV	NM_000243	exon1	c.A137T	p.Q46L	GCTCTCTGGATCT	.	138.0	67.0	136.0	1.0	.	228
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64575092	64575092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEN1	NM_130800	exon4	c.A730G	p.M244V	ACACCATGAACGC	.	42.0	31.0	99.0	0.0	.	3017
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29793483	29793483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEP1B	NM_005925	exon11	c.A1540C	p.N514H	ATGTCCAATCAGC	.	89.0	35.0	89.0	0.0	.	92
METTL13	51603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171753199	171753199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	METTL13	NM_015935	exon2	c.G473T	p.C158F	ATCTCTGCATCTC	.	190.0	49.0	112.0	0.0	.	91
MFAP4	4239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19289686	19289686	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MFAP4	NM_001198695	exon3	c.C249G	p.P83P	GCCCGAGGGGTAG	.	137.0	59.0	137.0	0.0	.	514
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141752594	141752594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAM	NM_004668	exon26	c.C2969T	p.S990F	CCAATTCTTCTGG	.	96.0	34.0	111.0	1.0	.	70
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141755835	141755835	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAM	NM_004668	exon29	c.C3519T	p.Y1173Y	CTACTACATGGGG	.	54.0	19.0	70.0	0.0	.	70
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141764190	141764190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAM	NM_004668	exon37	c.A4352G	p.E1451G	ATTTGGAGTCCAG	.	70.0	29.0	100.0	0.0	.	70
MGAT5B	146664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74921070	74921070	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAT5B	NM_198955	exon8	c.C1081A	p.R361R	CCAGGCCGGGGAA	.	54.0	20.0	78.0	0.0	.	93
MICALL1	85377	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38321666	38321666	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MICALL1	NM_033386	exon8	c.1083-2A>T	.	TCCTCCAGGACAC	.	111.0	46.0	149.0	1.0	.	153
MIR206	406989	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	52009189	52009189	+	RNA	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	.	.	.	.	ATGGATTACTTTG	.	194.0	37.0	149.0	1.0	.	.
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	14341108	14341108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MKL2	NM_014048	exon12	c.C1991T	p.P664L	GCCAGCCCGTCTC	.	72.0	26.0	99.0	0.0	.	95
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49432023	49432023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MLL2	NM_003482	exon34	c.A9116G	p.D3039G	AGGTCATCCAAGT	.	138.0	59.0	143.0	0.0	.	612
MLX	6945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40721541	40721541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MLX	NM_170607	exon6	c.G555T	p.Q185H	CATTCAGTTTTTG	.	79.0	32.0	83.0	0.0	.	90
MOV10L1	54456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50580530	50580530	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MOV10L1	NM_018995	exon16	c.C2091T	p.D697D	GACGGACCAAGCT	.	79.0	37.0	85.0	0.0	.	93
MPHOSPH10	10199	ucsc.edu;bcgsc.ca	37	2	71376544	71376544	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MPHOSPH10	NM_005791	exon10	c.A1857G	p.L619L	GAAGTTAAAACAG	.	468.0	185.0	483.0	2.0	.	93
MROH5	389690	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	142444651	142444651	+	RNA	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	.	.	.	.	GCTTACTGCGGAA	.	52.0	12.0	30.0	0.0	.	.
MRPS27	23107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71519592	71519592	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MRPS27	NM_015084	exon10	c.A923T	p.Q308L	GACCCCTGGTTGT	.	97.0	48.0	121.0	0.0	.	90
MTMR11	10903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	149902441	149902441	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MTMR11	NM_181873	exon15	c.1249-2A>G	.	TTTAACTGGACAG	.	76.0	11.0	35.0	0.0	.	90
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30066785	30066785	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MTUS2	NM_001033602	exon10	c.T3538C	p.L1180L	CCAGAATTGATGT	.	98.0	35.0	99.0	0.0	.	218
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9048117	9048117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC16	NM_024690	exon5	c.A33514G	p.I11172V	AAGAAATAGTCAG	.	71.0	28.0	112.0	0.0	.	566
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30955854	30955854	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC21	NM_001010909	exon3	c.A1584C	p.P528P	TGGTCCAGGCCCT	.	255.0	42.0	189.0	0.0	.	92
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1087958	1087958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC2	NM_002457	exon25	c.T3433C	p.C1145R	GAGACCTGCAGGA	.	61.0	25.0	94.0	0.0	.	90
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	1031239	1031239	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC6	NM_005961	exon5	c.C504G	p.Y168X	ACCCATGTACTTC	.	124.0	51.0	121.0	0.0	.	23
MURC	347273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103348527	103348527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MURC	NM_001018116	exon2	c.A889G	p.I297V	GACATCATTGCCA	.	120.0	50.0	153.0	1.0	.	69
MX2	4600	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	42762601	42762601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MX2	NM_002463	exon6	c.A842T	p.E281V	CCCATGAGGTGGA	.	81.0	38.0	112.0	2.0	.	92
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10212854	10212854	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH13	NM_003802	exon34	c.C4950G	p.V1650V	GCCCTGGACCGTG	.	47.0	21.0	49.0	0.0	.	6
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10351254	10351254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH4	NM_017533	exon34	c.C4846A	p.L1616M	TCCTCAGAGCATC	.	155.0	55.0	191.0	1.0	.	102
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23865974	23865974	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH6	NM_002471	exon19	c.A2221C	p.R741R	CCTTCCTGCTATC	.	110.0	40.0	124.0	0.0	.	94
MYH7	4625	ucsc.edu;bcgsc.ca	37	14	23901694	23901694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH7	NM_000257	exon6	c.T524G	p.L175R	GTGATCAGGATGG	.	121.0	52.0	148.0	2.0	.	94
MYO15A	51168	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18061879	18061879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO15A	NM_016239	exon51	c.G9010T	p.A3004S	GAGGACGCCCTGG	.	190.0	80.0	203.0	2.0	.	97
MYO1D	4642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	31048069	31048069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO1D	NM_015194	exon15	c.C1885T	p.R629C	TCTGGCGGAAGGC	.	125.0	10.0	155.0	0.0	.	137
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	26465717	26465717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO3A	NM_017433	exon31	c.G4381T	p.G1461C	TATCTGGGTGTCT	.	98.0	5.0	87.0	0.0	.	1007
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26377316	26377316	+	Missense_Mutation	SNP	G	G	T	rs200209381	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO3A	NM_017433	exon15	c.G1544T	p.R515L	AATCCCGAGTTAT	.	166.0	42.0	106.0	0.0	G|0.999;A|0.000	1007
MYT1	4661	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62844964	62844964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYT1	NM_004535	exon10	c.C1595A	p.P532H	GAGATCCTTCCAA	.	59.0	33.0	64.0	1.0	.	704
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	1983303	1983303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYT1L	NM_015025	exon7	c.G79T	p.E27X	ACAGCTCTTGTAT	.	92.0	32.0	141.0	0.0	.	95
NABP2	79035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56619991	56619991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_024068	exon5	c.A319G	p.N107D	GTTCCTAACTTCA	.	165.0	65.0	188.0	0.0	.	.
NACA2	342538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	59667968	59667968	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NACA2	NM_199290	exon1	c.A574T	p.R192X	TTGCTCTCGACAC	.	110.0	43.0	109.0	0.0	.	91
NANOS3	342977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13988465	13988465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NANOS3	NM_001098622	exon1	c.T403A	p.Y135N	CAGGGCTACACCT	.	52.0	29.0	77.0	0.0	.	69
NANP	140838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25596957	25596957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NANP	NM_152667	exon2	c.G351T	p.M117I	AGTAAGCATGGCT	.	89.0	37.0	121.0	0.0	.	90
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78513452	78513452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NAV3	NM_014903	exon15	c.C3476G	p.T1159S	CCAGTACCAGCAG	.	132.0	56.0	169.0	0.0	.	279
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35729982	35729982	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBEA	NM_015678	exon19	c.T2517A	p.I839I	GAAAATTCAGAAT	.	90.0	18.0	62.0	0.0	.	144
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47042832	47042832	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBEAL2	NM_015175	exon29	c.G4548T	p.L1516L	GGTCCTGGCCAGC	.	41.0	36.0	56.0	0.0	.	69
NBR1	4077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41349033	41349033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBR1	NM_031862	exon16	c.A1936G	p.T646A	AGTGGGACCCAGT	.	187.0	11.0	201.0	0.0	.	130
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	33324500	33324500	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NCOA6	NM_014071	exon12	c.A5956T	p.R1986X	CTGGTCTGGCAAC	.	123.0	54.0	146.0	0.0	.	292
NCSTN	23385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	160314603	160314606	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NCSTN	NM_015331	exon2	c.177_180del	p.59_60del	TCATCAGATTGGC	.	183.0	116.0	124.0	0.0	.	658
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152522831	152522831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEB	NM_004543	exon41	c.T4804A	p.Y1602N	TCATGTAGTGAAC	.	86.0	34.0	93.0	0.0	.	145
NEBL	10529	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21120179	21120179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEBL	NM_006393	exon16	c.C1617A	p.S539R	ATCCATGCTCACT	.	69.0	38.0	77.0	1.0	.	92
NEBL	10529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21178773	21178773	+	Splice_Site	SNP	C	C	A	rs139581346	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEBL	NM_006393	exon4	c.258+1G>T	.	ACCTTACCTCAGA	.	299.0	170.0	209.0	0.0	C|0.999;T|0.001	92
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73564819	73564819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEO1	NM_001172623	exon19	c.G2881C	p.V961L	AAGGATGTGACTG	.	91.0	35.0	123.0	0.0	.	116
NES	10763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156641502	156641502	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NES	NM_006617	exon4	c.A2478T	p.L826L	TGATTCTAGGATC	.	194.0	126.0	130.0	1.0	.	520
NEURL1B	54492	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	172097160	172097160	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001142651	exon2	c.A404T	p.E135V	TGCCCGAGAACCT	.	13.0	4.0	27.0	0.0	.	.
NFAT5	10725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	69703941	69703943	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NFAT5	NM_001113178	exon8	c.1431_1433del	p.477_478del	GAAAGGAGAAGAA	.	235.0	85.0	308.0	0.0	.	90
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	6069058	6069058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NLGN4X	NM_181332	exon2	c.C450A	p.N150K	GTAGATGTTTAAG	.	51.0	41.0	74.0	0.0	.	195
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7981937	7981937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NLRP10	NM_176821	exon2	c.A1222T	p.R408W	GGACCCTGTGCCG	.	57.0	23.0	57.0	0.0	.	209
NME1	4830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	49239133	49239133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NME1	NM_198175	exon6	c.A461T	p.E154V	AGAAGGAGATCGG	.	104.0	53.0	131.0	0.0	.	251
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33469275	33469275	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOL6	NM_022917	exon6	c.G792C	p.P264P	GCGGCACGGGCGG	.	98.0	45.0	116.0	0.0	.	92
NOS1	4842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117710243	117710243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOS1	NM_000620	exon10	c.A1786G	p.T596A	TCTCTGTGCCCAT	.	130.0	56.0	141.0	1.0	.	154
NOSTRIN	115677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169681160	169681160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOSTRIN	NM_001039724	exon3	c.A130C	p.S44R	GAAATTAGCTATG	.	600.0	221.0	701.0	0.0	.	90
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15281192	15281192	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOTCH3	NM_000435	exon27	c.T5064C	p.S1688S	GTGACCAGAGGCC	.	51.0	24.0	86.0	0.0	.	855
NOVA2	4858	broad.mit.edu;mdanderson.org	37	19	46444123	46444123	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOVA2	NM_002516	exon4	c.G477A	p.Q159Q	TCCTGACTGTTCC	.	10.0	3.0	32.0	0.0	.	226
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	24921224	24921224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_018958	exon1	c.G210T	p.R70S	TAAGAGGCCGTGT	.	46.0	21.0	39.0	0.0	.	.
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	24921716	24921716	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_018958	exon1	c.G702A	p.L234L	CTGCTTGGAAGGC	.	61.0	32.0	57.0	0.0	.	.
NPAS3	64067	broad.mit.edu;ucsc.edu	37	14	34270267	34270267	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NPAS3	NM_001164749	exon12	c.C2754G	p.Y918X	CGTCTACAGCAAC	.	100.0	36.0	116.0	1.0	.	93
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	34269082	34269082	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NPAS3	NM_001164749	exon12	c.G1569C	p.P523P	TAACCCGGACAGC	.	121.0	54.0	152.0	0.0	.	93
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107820770	107820770	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NRCAM	NM_001037132	exon22	c.G2748A	p.P916P	TAGCCCCGGCAAC	.	104.0	62.0	105.0	0.0	.	156
NRDE2	55051	ucsc.edu;bcgsc.ca	37	14	90744720	90744720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_017970	exon14	c.G3455T	p.R1152L	GGCAGGCGCACCC	.	106.0	42.0	141.0	2.0	.	.
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	50149221	50149221	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NRXN1	NM_001135659	exon24	c.C4505A	p.S1502X	TGGTATGAGCCTT	.	125.0	53.0	126.0	0.0	.	92
NSMCE1	197370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27268833	27268833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NSMCE1	NM_145080	exon2	c.A59G	p.Q20R	AGCAACTGGAGGA	.	106.0	49.0	146.0	0.0	.	90
NSUN4	387338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46810731	46810732	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NSUN4	NM_199044	exon2	c.352_353insT	p.P118fs	GCAGCCCCATCCC	.	82.0	34.0	74.0	0.0	.	90
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88472454	88472454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NTRK3	NM_001012338	exon17	c.T2101A	p.S701T	CTCTGGACATGCC	.	162.0	70.0	197.0	0.0	.	3538
NUDC	10726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27268120	27268120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUDC	NM_006600	exon3	c.A332G	p.E111G	ATGAAGAGGCAGA	.	175.0	15.0	200.0	0.0	.	91
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	17706588	17706588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUP153	NM_005124	exon1	c.G31T	p.G11C	CACCGCCCCCTCC	.	87.0	9.0	57.0	0.0	.	637
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13401819	13401819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUP210	NM_024923	exon15	c.A2105G	p.N702S	TGATAATTCCGGG	.	115.0	101.0	161.0	0.0	.	256
NYNRIN	57523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24882219	24882219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NYNRIN	NM_025081	exon7	c.G2659A	p.A887T	AAGCTGGCAGAGG	.	102.0	47.0	152.0	1.0	.	3
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228462464	228462464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OBSCN	NM_001271223	exon24	c.G7000T	p.D2334Y	ATCTCAGACCTGG	.	96.0	16.0	73.0	0.0	.	403
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228559946	228559946	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OBSCN	NM_001271223	exon105	c.A24338T	p.E8113V	AGGCTGAGGATCT	.	192.0	39.0	113.0	0.0	.	403
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127549471	127549471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OLFML2A	NM_182487	exon2	c.A308G	p.E103G	AGAACGAGTGGAA	.	70.0	35.0	76.0	0.0	.	68
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	193332727	193332727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OPA1	NM_130832	exon2	c.A248T	p.Q83L	GCTACCAGCCTCG	.	246.0	17.0	280.0	0.0	.	68
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	193374929	193374929	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OPA1	NM_130837	exon23	c.G2239T	p.E747X	GGGAAAGAGCATG	.	131.0	64.0	191.0	0.0	.	68
OR10A5	144124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6867208	6867208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR10A5	NM_178168	exon1	c.G295T	p.A99S	GGCTGTGCCACTC	.	222.0	92.0	237.0	0.0	.	71
OR10Z1	128368	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158577013	158577013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR10Z1	NM_001004478	exon1	c.C785A	p.P262H	TGAGGCCCAAAGC	.	231.0	45.0	125.0	2.0	.	70
OR14A16	284532	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247978552	247978552	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR14A16	NM_001001966	exon1	c.C480A	p.G160G	GAAGGTGCCAGCT	.	230.0	52.0	129.0	1.0	.	46
OR1A1	8383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	3119514	3119514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR1A1	NM_014565	exon1	c.C600A	p.Y200X	GATGTACCTAGGG	.	85.0	36.0	99.0	0.0	.	70
OR2A12	346525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143792917	143792917	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2A12	NM_001004135	exon1	c.C717A	p.T239T	CTCTACCTGCTCC	.	136.0	44.0	173.0	0.0	.	92
OR2AG1	144125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6806883	6806883	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2AG1	NM_001004489	exon1	c.C615T	p.T205T	TGTGACCTTCCTG	.	104.0	43.0	83.0	0.0	.	68
OR2F1	26211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143657623	143657623	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2F1	NM_012369	exon1	c.T560A	p.L187Q	TCAGGCTGGCTTG	.	161.0	56.0	172.0	0.0	.	71
OR2G3	81469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247769234	247769234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2G3	NM_001001914	exon1	c.C347A	p.A116D	TCTTGGCTGACAT	.	288.0	202.0	186.0	1.0	.	68
OR2G6	391211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248685871	248685871	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2G6	NM_001013355	exon1	c.T924C	p.S308S	GGGTAGTGCTGCT	.	74.0	8.0	37.0	0.0	.	71
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248366439	248366439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2M3	NM_001004689	exon1	c.C70T	p.H24Y	CCCACCCACACCT	.	563.0	114.0	339.0	0.0	.	70
OR2M7	391196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248487089	248487089	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2M7	NM_001004691	exon1	c.A782T	p.Q261L	GTGGGCTGAATGC	.	374.0	82.0	249.0	1.0	.	70
OR4D2	124538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56247411	56247411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR4D2	NM_001004707	exon1	c.A395G	p.Y132C	TCCGCTATGTCAC	.	73.0	28.0	74.0	0.0	.	114
OR4K17	390436	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20586546	20586546	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR4K17	NM_001004715	exon1	c.A981C	p.I327I	GAAGATATCCATG	.	70.0	33.0	99.0	1.0	.	71
OR51L1	119682	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5020779	5020779	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR51L1	NM_001004755	exon1	c.A567G	p.L189L	AAGATTATCCTGT	.	127.0	55.0	168.0	2.0	.	69
OR51V1	283111	ucsc.edu;bcgsc.ca	37	11	5221747	5221747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR51V1	NM_001004760	exon1	c.C184A	p.P62T	GGCTTGGCTCAGT	.	88.0	36.0	136.0	2.0	.	69
OR56A5	390084	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	5988980	5988980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001146033	exon1	c.A745T	p.I249F	TGAGGATGAAGTG	.	157.0	63.0	195.0	0.0	.	.
OR6B1	135946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143701238	143701238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR6B1	NM_001005281	exon1	c.T149A	p.L50Q	TGGTGCTGCAAAA	.	165.0	64.0	204.0	0.0	.	91
OR6K2	81448	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669520	158669520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR6K2	NM_001005279	exon1	c.A923G	p.Q308R	TTAGCTTGACCTA	.	437.0	84.0	229.0	1.0	.	69
OR6T1	219874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123814484	123814484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR6T1	NM_001005187	exon1	c.A62T	p.H21L	ATGAGGTGGCTAC	.	104.0	50.0	137.0	1.0	.	69
OR8G2	26492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124095466	124095466	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001007249	exon1	c.T69A	p.T23T	AGTGACTGAGTTC	.	126.0	53.0	168.0	0.0	.	.
OR8H2	390151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55873220	55873220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8H2	NM_001005200	exon1	c.G702T	p.K234N	AGGAAAGCAGAAA	.	182.0	73.0	157.0	1.0	.	70
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55904587	55904587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8J3	NM_001004064	exon1	c.C608A	p.A203E	GTTGCTGCAGATA	.	76.0	33.0	53.0	0.0	.	70
OR8J3	81168	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55904573	55904573	+	Missense_Mutation	SNP	C	C	A	rs1384094	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8J3	NM_001004064	exon1	c.G622T	p.V208F	AAAAAACCAAATT	.	84.0	36.0	48.0	0.0	C|0.992;A|0.008	70
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56113774	56113774	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8K1	NM_001002907	exon1	c.T260A	p.M87K	CGAAGATGTTAGT	.	149.0	53.0	145.0	0.0	.	70
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83998905	83998905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OSGIN1	NM_182981	exon6	c.G727A	p.V243I	AACGTGGTCCTCG	.	35.0	15.0	42.0	0.0	.	68
OSR1	130497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	19552136	19552136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OSR1	NM_145260	exon3	c.A701G	p.Q234R	CACTCTTGACACT	.	115.0	48.0	108.0	0.0	.	257
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80750668	80750668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_173591	exon48	c.A5966T	p.E1989V	AGGAAGAACCTTG	.	269.0	120.0	247.0	1.0	.	.
OXGR1	27199	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	97639601	97639601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OXGR1	NM_080818	exon4	c.C413A	p.P138Q	CTCATTGGGTGAA	.	107.0	41.0	150.0	1.0	.	70
P2RY10	27334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78216943	78216943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	P2RY10	NM_198333	exon2	c.C926A	p.A309D	TTATGGCTTCAGA	.	188.0	84.0	125.0	0.0	.	542
P2RY6	5031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73007940	73007940	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	P2RY6	NM_176796	exon4	c.T377A	p.L126Q	GCTACCTGGGCAT	.	38.0	8.0	25.0	0.0	.	501
PABPC4L	132430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	135121999	135121999	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001114734	exon2	c.T350A	p.L117X	AGCTGCAAGAAGT	.	71.0	31.0	78.0	0.0	.	.
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9525119	9525119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PAK7	NM_177990	exon8	c.T1766C	p.F589S	GCACAGAAACCAA	.	139.0	48.0	169.0	0.0	.	1434
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34759158	34759158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PARD3	NM_001184788	exon4	c.C437T	p.P146L	AGAGCTGGGTCAC	.	130.0	34.0	117.0	0.0	.	92
PARD3B	117583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	206036933	206036933	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PARD3B	NM_057177	exon12	c.1621-2A>T	.	TGCCTTAGGATGG	.	128.0	50.0	148.0	0.0	.	140
PCBP3	54039	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47320533	47320533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCBP3	NM_001130141	exon4	c.A218G	p.E73G	TGCGTGAGGAGGT	.	222.0	66.0	308.0	1.0	.	227
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu	37	X	91131828	91131828	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDH11X	NM_001168363	exon2	c.A589T	p.K197X	GGAGACAAGATGC	.	554.0	238.0	333.0	1.0	.	193
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91873264	91873264	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDH11X	NM_032968	exon7	c.T3369A	p.A1123A	AACAGCTGCAGAA	.	245.0	116.0	112.0	0.0	.	193
PCDHA3	56145	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140183244	140183244	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHA3	NM_031497	exon1	c.T2462A	p.L821Q	CTCCTCTGGAAAT	.	93.0	36.0	82.0	1.0	.	98
PCDHA5	56143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140202294	140202294	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHA5	NM_018908	exon1	c.T934G	p.Y312D	GAAGACTATAACT	.	147.0	60.0	150.0	1.0	.	137
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140308412	140308412	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHAC1	NM_031882	exon1	c.A1935G	p.P645P	CCCACCACTTTCC	.	74.0	23.0	74.0	0.0	.	28
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140572771	140572771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHB10	NM_018930	exon1	c.G646T	p.D216Y	GCGCTGGATGGTG	.	133.0	51.0	147.0	0.0	.	92
PCDHB6	56130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140531986	140531986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHB6	NM_018939	exon1	c.G2148T	p.R716S	GAGCAGGGCGGCC	.	45.0	22.0	57.0	0.0	.	91
PCDHB7	56129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140553027	140553027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHB7	NM_018940	exon1	c.A611T	p.E204V	GGGAAGAGATACC	.	168.0	91.0	161.0	0.0	.	95
PCDHGA3	56112	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140723872	140723872	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHGA3	NM_032011	exon1	c.A272C	p.D91A	GGATAGACCGGGA	.	142.0	54.0	164.0	1.0	.	68
PCLO	27445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82580709	82580709	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon6	c.A9195T	p.T3065T	TCTTGCTGTGGAA	.	93.0	45.0	125.0	1.0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82467649	82467649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon15	c.A14107G	p.N4703D	CATAGTTAATTTG	.	66.0	22.0	72.0	0.0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82581285	82581285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon5	c.C8984A	p.S2995Y	GTGTCAGACATGG	.	168.0	85.0	161.0	0.0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82764725	82764725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon3	c.G2141T	p.G714V	GGAGAGCCATGAA	.	151.0	71.0	167.0	0.0	.	29
PDGFRA	5156	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55152024	55152024	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PDGFRA	NM_006206	exon18	c.T2456G	p.L819R	GTGATCTGGCTGC	.	52.0	21.0	51.0	1.0	.	9497
PDPR	55066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70190550	70190550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PDPR	NM_017990	exon19	c.C2408A	p.A803D	GCAGTGCCTACAG	.	83.0	34.0	111.0	1.0	.	135
PEF1	553115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32101091	32101091	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PEF1	NM_012392	exon2	c.A57T	p.G19G	AGGGGCTCCTGGT	.	270.0	105.0	308.0	0.0	.	68
PEG3	5178	hgsc.bcm.edu;broad.mit.edu	37	19	57327366	57327366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PEG3	NM_001146184	exon9	c.A2444G	p.H815R	CTCTGATGGTTGA	.	148.0	6.0	177.0	0.0	.	164
PENK	5179	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57354153	57354153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PENK	NM_001135690	exon4	c.T482A	p.L161Q	GTTTCCAGAAGCT	.	202.0	26.0	173.0	1.0	.	517
PHACTR3	116154	broad.mit.edu;bcgsc.ca	37	20	58180075	58180075	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHACTR3	NM_080672	exon1	c.C6G	p.A2A	CATGGCCGCGTCG	.	18.0	6.0	22.0	0.0	.	93
PHC1	1911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	9083485	9083485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHC1	NM_004426	exon7	c.C1067A	p.T356K	CACGGACAGCCAC	.	121.0	36.0	79.0	0.0	.	154
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	64389990	64389990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHF3	NM_015153	exon2	c.A334T	p.R112W	CCTAACAGGAACT	.	124.0	60.0	149.0	0.0	.	229
PHF6	84295	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133547942	133547942	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHF6	NM_032335	exon7	c.A678G	p.R226R	AGCACGAGGAAAA	.	631.0	311.0	342.0	2.0	.	131
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47622887	47622887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHKB	NM_000293	exon10	c.C942G	p.S314R	TTTTAGCCAGACA	.	73.0	26.0	68.0	0.0	.	154
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18273890	18273890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PIK3R2	NM_005027	exon10	c.A1223G	p.E408G	GCCACGAGTCTCT	.	147.0	50.0	178.0	0.0	.	1311
PIP5K1B	8395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71555562	71555562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PIP5K1B	NM_003558	exon14	c.C1358A	p.A453D	TCCTAGCCCTGGG	.	147.0	64.0	146.0	0.0	.	240
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110509272	110509272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PKHD1L1	NM_177531	exon64	c.C10452G	p.C3484W	GACATGCTGGGAT	.	318.0	68.0	140.0	0.0	.	145
PLA2G3	50487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31533830	31533830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLA2G3	NM_015715	exon4	c.G932T	p.G311V	GGTGGCCCCTTCC	.	90.0	37.0	144.0	0.0	.	226
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9288511	9288511	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCB4	NM_182797	exon2	c.T50G	p.L17W	CCTTTTTGCAAGA	.	80.0	51.0	80.0	0.0	.	274
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9352961	9352961	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCB4	NM_182797	exon9	c.T597A	p.I199I	TGAAATTGAGCCC	.	165.0	80.0	186.0	0.0	.	274
PLCXD2	257068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111394182	111394182	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCXD2	NM_001185106	exon1	c.C90A	p.V30V	GGAGGTCTGCAAT	.	213.0	91.0	266.0	0.0	.	227
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	171395376	171395376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLD1	NM_002662	exon17	c.A1976G	p.Q659R	TCAAGTTGAACCC	.	113.0	56.0	147.0	0.0	.	660
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4510630	4510630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLIN4	NM_001080400	exon3	c.G3300T	p.K1100N	AAGGCCCTTGGTA	.	63.0	30.0	65.0	0.0	.	68
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131908376	131908376	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLXNA4	NM_020911	exon9	c.A2007G	p.P669P	GCGGTATGGACTC	.	84.0	50.0	135.0	0.0	.	91
PNMAL1	55228	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46974216	46974216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PNMAL1	NM_018215	exon2	c.T77C	p.L26S	GTGACCAACAAGG	.	101.0	38.0	109.0	2.0	.	68
PNPLA1	285848	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36238348	36238348	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PNPLA1	NM_001145717	exon1	c.C112T	p.L38L	CGGGACCTGGCCC	.	401.0	111.0	250.0	2.0	.	137
POLH	5429	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43555153	43555153	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	POLH	NM_006502	exon4	c.A417T	p.A139A	CTCGGCAGACTTG	.	296.0	83.0	187.0	1.0	.	290
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121208148	121208148	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	POLQ	NM_199420	exon16	c.G3630A	p.Q1210Q	ATTTTTCTGTTTG	.	121.0	53.0	109.0	0.0	.	664
POM121L2	94026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27279131	27279131	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_033482	exon1	c.T819A	p.S273R	GGGAACACTTCTC	.	152.0	30.0	101.0	0.0	.	.
POU3F4	5456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	82764127	82764127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	POU3F4	NM_000307	exon1	c.C795A	p.S265R	AGGGAGCCCGACC	.	367.0	152.0	226.0	1.0	.	131
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	82147865	82147865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPFIA2	NM_001220476	exon2	c.C136G	p.L46V	TGTCTAGAAGACG	.	120.0	49.0	138.0	0.0	.	231
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	27832961	27832961	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPFIBP1	NM_177444	exon20	c.T1880A	p.L627X	CCCGATTAGGTTG	.	74.0	39.0	90.0	0.0	.	228
PPIG	9360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170465241	170465241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPIG	NM_004792	exon7	c.A350G	p.K117R	GAGGGAAGGATAC	.	356.0	154.0	378.0	0.0	.	92
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49143177	49143177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPP1R3F	NM_033215	exon4	c.A2025G	p.I675M	CCAGATAGAGGTC	.	115.0	99.0	134.0	0.0	.	229
PPP1R9A	55607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94540283	94540283	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPP1R9A	NM_017650	exon2	c.T858C	p.S286S	TAAAAGTACCTCT	.	134.0	59.0	163.0	1.0	.	208
PRAMEF12	390999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12837669	12837669	+	Missense_Mutation	SNP	G	G	A	rs201008398	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRAMEF12	NM_001080830	exon3	c.G1379A	p.G460D	GCTGTGGCATCAG	.	275.0	125.0	291.0	0.0	G|0.993;T|0.007	25
PRB2	653247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	11546400	11546400	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRB2	NM_006248	exon3	c.A612T	p.P204P	TGGGGGTGGTCCT	.	322.0	46.0	369.0	0.0	.	22
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68965436	68965436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PREX2	NM_025170	exon9	c.C1048A	p.H350N	GAGAAGCATGAAT	.	192.0	130.0	142.0	0.0	.	390
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48695065	48695065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRKDC	.	.	.	.	CGCAGGTCCTCGC	.	59.0	15.0	39.0	0.0	.	1515
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76063253	76063253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRKRIR	NM_004705	exon5	c.T941A	p.I314K	TCAGTTATCATAG	.	387.0	135.0	401.0	1.0	.	93
PRL	5617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	22287693	22287693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRL	NM_000948	exon5	c.C622A	p.H208N	TTTTATGTGAATC	.	143.0	43.0	63.0	0.0	.	90
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4057278	4057278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRPF4B	NM_003913	exon13	c.A2590G	p.K864E	ATAGGTAAAAGCT	.	122.0	25.0	64.0	0.0	.	1308
PRPS1L1	221823	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	18066634	18066634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRPS1L1	NM_175886	exon1	c.A772G	p.I258V	GAGAAATGGCTGG	.	147.0	11.0	173.0	1.0	.	1
PRSS16	10279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27216671	27216671	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRSS16	NM_005865	exon3	c.A283T	p.I95L	GGACCCATATTCC	.	295.0	57.0	220.0	2.0	.	94
PRTFDC1	56952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	25145922	25145922	+	Missense_Mutation	SNP	A	A	T	rs148662493		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTFDC1	NM_020200	exon6	c.T426A	p.D142E	GACAACATCCTTT	.	164.0	12.0	136.0	0.0	A|1.000;T|0.000	91
PRTFDC1	56952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25226147	25226147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTFDC1	NM_020200	exon3	c.T305C	p.M102T	ACCTTCATTGAGA	.	86.0	22.0	79.0	0.0	.	91
PRTG	283659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55971629	55971629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTG	NM_173814	exon7	c.G988T	p.V330F	ATTCAACAAATGA	.	104.0	44.0	88.0	0.0	.	92
PRUNE2	158471	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79318669	79318669	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRUNE2	NM_015225	exon9	c.G7860A	p.T2620T	TGATCTCGTATCG	.	111.0	45.0	141.0	2.0	.	157
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79325463	79325463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRUNE2	NM_015225	exon8	c.G1727T	p.S576I	CTGGGACTGTCTT	.	74.0	27.0	83.0	0.0	.	157
PSAP	5660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73591653	73591653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSAP	NM_002778	exon3	c.A199G	p.K67E	CGTCTTTGCATAT	.	116.0	19.0	85.0	0.0	.	91
PSMA4	5685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78837269	78837269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA4	NM_001102667	exon6	c.G346A	p.D116N	CTGTGTGATATCA	.	99.0	39.0	129.0	0.0	.	90
PSMA7	5688	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	60718284	60718284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA7	NM_002792	exon1	c.G76C	p.V26L	TCTTGACGGCCTC	.	18.0	14.0	9.0	0.0	.	90
PSMA7	5688	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	60718296	60718296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA7	NM_002792	exon1	c.G64T	p.A22S	CCTGCGCGTACTC	.	16.0	12.0	11.0	0.0	.	90
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23397834	23397834	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTCHD1	NM_173495	exon2	c.C478T	p.L160L	GAAGAGCTAAAGA	.	242.0	204.0	358.0	0.0	.	135
PTER	9317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16553155	16553155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTER	NM_001001484	exon6	c.T950C	p.L317P	ATATACTCACCAA	.	156.0	31.0	123.0	0.0	.	92
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46937344	46937344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTH1R	NM_001184744	exon4	c.G298T	p.G100C	CCCACTGGCAGCA	.	100.0	90.0	132.0	1.0	.	522
PTK7	5754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43109672	43109672	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTK7	NM_001270398	exon12	c.T1796A	p.F599Y	CAGTTTTTATCAC	.	88.0	27.0	49.0	0.0	.	1493
PTPLAD2	401494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21008034	21008034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPLAD2	NM_001010915	exon6	c.T602C	p.M201T	AGCATCATGAGAT	.	98.0	43.0	98.0	0.0	.	91
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87732253	87732253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPN13	NM_080685	exon47	c.C7369A	p.Q2457K	ATGGTTCAGACAG	.	42.0	12.0	46.0	0.0	.	230
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121653036	121653036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPRZ1	NM_002851	exon12	c.T3936A	p.F1312L	TGTATTTGCTACA	.	146.0	57.0	157.0	0.0	.	699
PUS1	80324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132423731	132423731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PUS1	NM_025215	exon4	c.C455A	p.A152D	CCGCAGCCGGCCA	.	88.0	42.0	100.0	0.0	.	577
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52320842	52320842	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PXDNL	NM_144651	exon17	c.C3342G	p.P1114P	GTAGGAGGGTGCC	.	193.0	73.0	145.0	0.0	.	70
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52321428	52321428	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PXDNL	NM_144651	exon17	c.T2756A	p.L919H	TTCAGGAGACCCC	.	201.0	67.0	178.0	0.0	.	70
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64527129	64527129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PYGM	NM_001164716	exon1	c.A242G	p.K81R	AGCACCTTGGGGT	.	26.0	20.0	51.0	0.0	.	92
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37599570	37599570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	QPCT	NM_012413	exon6	c.T895A	p.Y299N	TACAGTTATGGAG	.	99.0	41.0	119.0	0.0	.	90
RAB11FIP5	26056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73315575	73315575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAB11FIP5	NM_015470	exon3	c.A1171G	p.S391G	TACGACTGCCTCT	.	39.0	15.0	39.0	0.0	.	90
RAB3IL1	5866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61675695	61675695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAB3IL1	NM_001271686	exon2	c.A236G	p.H79R	TCCCTGTGGCCTT	.	19.0	14.0	47.0	0.0	.	228
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17698925	17698925	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAI1	NM_030665	exon3	c.A2663T	p.Q888L	GCATGCAGGACCC	.	66.0	33.0	80.0	0.0	.	91
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21940198	21940198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAP1GAP	NM_001145658	exon9	c.A589T	p.T197S	ACTTGGTCCTGAG	.	36.0	18.0	54.0	0.0	.	245
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134526250	134526250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAPGEF1	NM_198679	exon2	c.A151G	p.K51E	TTCCCTTCTTTGA	.	169.0	68.0	172.0	0.0	.	849
RARA	5914	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	38512266	38512266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RARA	NM_000964	exon9	c.G1177A	p.E393K	GGGGCTGAGCGGG	.	177.0	79.0	174.0	1.0	.	1083
RASA2	5922	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141290358	141290358	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RASA2	NM_006506	exon11	c.T1131C	p.F377F	TCCTTTTGCCACT	.	200.0	64.0	221.0	1.0	.	661
RASSF8	11228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26217535	26217535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RASSF8	NM_007211	exon4	c.G208T	p.A70S	CAGTATGCTAGTG	.	100.0	42.0	119.0	0.0	.	90
RBL1	5933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	35632146	35632146	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RBL1	NM_183404	exon21	c.A2995T	p.R999X	CGCTTCTTGGTGT	.	228.0	97.0	213.0	0.0	.	419
RBL2	5934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53515713	53515713	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RBL2	NM_005611	exon21	c.A3215C	p.K1072T	GAGAAAAGATTTT	.	111.0	57.0	121.0	0.0	.	841
RBM12	10137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34242510	34242510	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RBM12	NM_001198840	exon2	c.G735A	p.P245P	CAAGGGCGGCATG	.	72.0	26.0	81.0	2.0	.	93
RCVRN	5957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9804355	9804355	+	Silent	SNP	C	C	T	rs144667256		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RCVRN	NM_002903	exon2	c.G444A	p.P148P	CTTTTCCGGCGTG	.	99.0	49.0	101.0	0.0	C|1.000;T|0.000	90
RDH8	50700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10129508	10129508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RDH8	NM_015725	exon3	c.G424T	p.V142F	CGTCTCGTCAAAG	.	77.0	25.0	81.0	0.0	.	94
RFPL2	10739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32586882	32586882	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RFPL2	NM_001098527	exon5	c.G1014A	p.E338E	CAATGGCTCCTCA	.	264.0	116.0	250.0	0.0	.	91
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54764467	54764467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RGS20	NM_170587	exon1	c.A8T	p.Q3L	TGCCCCAGCTTTC	.	124.0	32.0	95.0	0.0	.	227
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72892030	72892030	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RIMS1	NM_014989	exon6	c.C856G	p.L286V	GGAGCCCTGAAGA	.	279.0	128.0	295.0	0.0	.	144
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	24806550	24806550	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RIPK3	NM_006871	exon8	c.T1017A	p.S339S	ATTACGAGAGTGC	.	28.0	13.0	52.0	0.0	.	946
RNF214	257160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	117109396	117109396	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RNF214	NM_207343	exon3	c.A187T	p.R63X	AATAACAGAAATG	.	137.0	58.0	150.0	0.0	.	90
RNF216	54476	broad.mit.edu;bcgsc.ca	37	7	5756357	5756357	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RNF216	NM_207111	exon10	c.A1685C	p.Q562P	TGATACTGTTCTT	.	89.0	6.0	127.0	0.0	.	274
RNF8	9025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37349083	37349083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RNF8	NM_003958	exon7	c.G1394T	p.S465I	ATCTGAGCTCAGA	.	194.0	40.0	127.0	1.0	.	227
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78684981	78684981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROBO1	NM_002941	exon23	c.G3315T	p.Q1105H	TTGTTTCTGCTGT	.	326.0	95.0	275.0	0.0	.	67
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78711213	78711213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROBO1	NM_002941	exon15	c.T2018A	p.L673Q	TTTCCCAGCTCTC	.	291.0	86.0	232.0	0.0	.	67
ROBO2	6092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77629214	77629214	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROBO2	NM_002942	exon16	c.A2445T	p.A815A	GGTTGCAGCTAGT	.	175.0	105.0	142.0	1.0	.	328
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	64515633	64515633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROR1	NM_001083592	exon3	c.T434C	p.V145A	CTGGAGTCTTGTT	.	75.0	26.0	97.0	0.0	.	1536
ROR2	4920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94486208	94486208	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROR2	NM_004560	exon9	c.C2568A	p.V856V	CTTGGGGACCATC	.	39.0	16.0	73.0	0.0	.	1471
RP1	6101	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	55533893	55533893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RP1	NM_006269	exon2	c.C367T	p.R123C	CGTCGGCGCCCGC	.	142.0	89.0	75.0	1.0	.	102
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10465648	10465648	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RP1L1	NM_178857	exon4	c.A5960T	p.Q1987L	GCCTCCTGGGTCT	.	38.0	21.0	80.0	0.0	.	139
RPL27	6155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41150829	41150829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RPL27	NM_000988	exon2	c.G62A	p.R21H	CCGGACGCAAAGC	.	42.0	19.0	50.0	0.0	.	90
RTN4IP1	84816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107076839	107076839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RTN4IP1	NM_032730	exon1	c.T58C	p.W20R	TTCTCCAGAAGCA	.	76.0	36.0	78.0	0.0	.	90
RUFY2	55680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70141014	70141014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RUFY2	NM_017987	exon11	c.A1187T	p.N396I	TCTATGTTAATTG	.	116.0	37.0	81.0	0.0	.	91
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237666678	237666678	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RYR2	NM_001035	exon22	c.A2486T	p.K829I	TGCCAAAAGAAAA	.	273.0	198.0	193.0	2.0	.	158
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77843998	77843998	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAMD15	NM_001010860	exon1	c.T237A	p.P79P	GAAACCTGGCGGG	.	127.0	53.0	129.0	0.0	.	90
SAMD9	54809	ucsc.edu;bcgsc.ca	37	7	92732405	92732405	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAMD9	NM_001193307	exon2	c.G3006A	p.L1002L	TTTATTCAGGTGA	.	140.0	54.0	136.0	2.0	.	140
SAR1A	56681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71917592	71917592	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAR1A	NM_020150	exon5	c.A276C	p.A92A	ATTAATTGCTGGG	.	127.0	43.0	92.0	0.0	.	227
SAT2	112483	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7530941	7530941	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAT2	NM_133491	exon1	c.C13A	p.R5R	GGATCCGCACGGA	.	89.0	31.0	101.0	0.0	.	90
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38766700	38766700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN10A	NM_006514	exon17	c.T3193G	p.W1065G	CTTTCCACGTCTC	.	60.0	45.0	140.0	1.0	.	99
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38926834	38926834	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN11A	NM_014139	exon17	c.T3009C	p.F1003F	CCATCCAAAGCCA	.	118.0	102.0	144.0	1.0	.	99
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166897949	166897949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN1A	NM_001165963	exon13	c.C2207T	p.P736L	CAACAGGGTGGGC	.	73.0	30.0	72.0	0.0	.	147
SCNN1D	6339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1222886	1222886	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCNN1D	NM_001130413	exon10	c.1311-2A>T	.	CATTCCAGACAGT	.	71.0	24.0	114.0	0.0	.	90
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18491619	18491619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEC23B	NM_032985	exon2	c.A140G	p.E47G	TGAAAGAACGTCC	.	239.0	106.0	216.0	0.0	.	91
SEC24C	9632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75525661	75525661	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEC24C	NM_004922	exon11	c.A1470T	p.V490V	CACTGTAGATTAC	.	108.0	34.0	123.0	0.0	.	92
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74883712	74883712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEMA4F	NM_001271662	exon2	c.C197A	p.S66Y	ATTACTCTGTTCT	.	119.0	52.0	148.0	0.0	.	93
SEPSECS	51091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25160667	25160667	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEPSECS	NM_016955	exon2	c.A177C	p.A59A	CATGATTGCAAGT	.	265.0	154.0	199.0	0.0	.	90
SERPINE2	5270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	224866418	224866418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SERPINE2	NM_001136530	exon2	c.T236A	p.L79Q	GCCCCCAGCTGAA	.	63.0	27.0	63.0	0.0	.	290
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167183368	167183368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SERPINI2	NM_001012303	exon5	c.A602T	p.Q201L	AATTTCTGTTTCC	.	102.0	43.0	106.0	0.0	.	228
SETD3	84193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	99865385	99865385	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SETD3	NM_032233	exon13	c.A1416G	p.K472K	AATCTCTTTCTCA	.	142.0	57.0	148.0	0.0	.	514
SEZ6L	23544	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26702074	26702074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEZ6L	NM_021115	exon6	c.T1478C	p.L493P	TGCACCTGCACTT	.	90.0	32.0	75.0	1.0	.	95
SFTPA1	653509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81371581	81371581	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001093770	exon3	c.C45A	p.A15A	CAGAGCCATGTGG	.	421.0	152.0	332.0	1.0	.	.
SHOC2	8036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	112724768	112724768	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SHOC2	NM_007373	exon2	c.652delA	p.S218fs	AAACTCAGCATGC	.	133.0	42.0	102.0	0.0	.	524
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77675938	77675938	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SHROOM3	NM_020859	exon7	c.C4302T	p.A1434A	GTGGGCCCACGCA	.	151.0	58.0	172.0	1.0	.	93
SIGLEC1	6614	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3674934	3674934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SIGLEC1	NM_023068	exon12	c.G3190A	p.V1064I	TATAGACACCCTC	.	122.0	47.0	193.0	1.0	.	167
SIGLEC7	27036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51645871	51645871	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SIGLEC7	NM_016543	exon1	c.A245T	p.N82I	CAAACAACCCAGC	.	95.0	9.0	139.0	0.0	.	153
SIRT5	23408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13588600	13588600	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SIRT5	NM_012241	exon4	c.G153A	p.K51K	AGCAAAGCACATA	.	367.0	86.0	173.0	0.0	.	228
SLC16A9	220963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61443920	61443920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC16A9	NM_194298	exon2	c.T130C	p.F44L	CACCAAAGGCATC	.	243.0	12.0	213.0	0.0	.	93
SLC1A6	6511	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	15083653	15083653	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC1A6	NM_001272087	exon4	c.C70T	p.Q24X	GCCGCTGCAGCCA	.	107.0	48.0	106.0	1.0	.	186
SLC22A24	283238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62886696	62886696	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001136506	exon3	c.A618T	p.A206A	GAACCCTGCCAAG	.	213.0	76.0	205.0	0.0	.	.
SLC22A4	6583	broad.mit.edu;bcgsc.ca	37	5	131647952	131647952	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC22A4	NM_003059	exon2	c.A492G	p.S164S	GCTGTCAGACAGG	.	61.0	5.0	106.0	0.0	.	90
SLC23A2	9962	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	4837746	4837746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC23A2	NM_203327	exon17	c.A1825G	p.I609V	TTATAATGTTCAT	.	79.0	40.0	124.0	2.0	.	92
SLC27A5	10998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59022230	59022230	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC27A5	NM_012254	exon2	c.C756T	p.L252L	ATGGCTGAGGTAG	.	52.0	25.0	55.0	0.0	.	90
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211751602	211751602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC30A1	NM_021194	exon1	c.G353T	p.G118V	CCGACCCCAAGGA	.	205.0	43.0	105.0	0.0	.	93
SLC37A3	84255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140048534	140048534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC37A3	NM_207113	exon10	c.A916G	p.N306D	AGTAATTCACTAA	.	90.0	44.0	120.0	0.0	.	93
SLC41A3	54946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	125775394	125775416	+	Frame_Shift_Del	DEL	ATGGCCAGGCAATGCACCACGAT	ATGGCCAGGCAATGCACCACGAT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	ATGGCCAGGCAATGCACCACGAT	ATGGCCAGGCAATGCACCACGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC41A3	NM_001008487	wholegene			ACCACCATGGCCA	.	88.0	14.0	140.0	0.0	.	90
SLC44A4	80736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31839119	31839119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC44A4	NM_025257	exon9	c.T673G	p.F225V	GGGCAAAATCTTC	.	168.0	7.0	117.0	0.0	.	156
SLC4A1	6521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42328926	42328926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC4A1	NM_000342	exon18	c.C2342T	p.S781F	ATGCGGGACAGGA	.	135.0	47.0	153.0	0.0	.	92
SLC5A1	6523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32495287	32495287	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC5A1	NM_000343	exon12	c.C1398A	p.P466P	ACCACCCATTGCG	.	74.0	30.0	129.0	1.0	.	91
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1409895	1409895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A3	NM_001044	exon10	c.C1339A	p.L447I	TGAAGAGCTCACG	.	51.0	29.0	74.0	0.0	.	157
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28534791	28534791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A4	NM_001045	exon13	c.T1609A	p.W537R	TCCTCCAGAACCA	.	117.0	43.0	205.0	0.0	.	94
SLC6A5	9152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	20652295	20652295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A5	NM_004211	exon10	c.A1558C	p.I520L	TTCGTCATCTTCT	.	134.0	52.0	151.0	0.0	.	156
SLC9C2	284525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173526479	173526479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_178527	exon10	c.G1215T	p.M405I	TCCTACCATTTGT	.	445.0	95.0	262.0	0.0	.	.
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33767910	33767910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLFN13	NM_144682	exon6	c.T2398A	p.F800I	TTTCAAAGAAGCA	.	114.0	52.0	92.0	0.0	.	91
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	20255500	20255500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLIT2	NM_004787	exon1	c.A62G	p.N21S	TCCTGAACAAGGT	.	42.0	11.0	17.0	0.0	.	521
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	20525440	20525440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLIT2	NM_004787	exon13	c.C1188A	p.H396Q	TCTCCACAACTTG	.	251.0	15.0	208.0	0.0	.	521
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86368800	86368800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLITRK6	NM_032229	exon2	c.T1844G	p.L615R	ATAATCAGAAGTC	.	173.0	69.0	194.0	0.0	.	137
SMG9	56006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44241827	44241827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SMG9	NM_019108	exon9	c.A917T	p.Q306L	GCAATCTGGAGTG	.	70.0	26.0	94.0	0.0	.	91
SMOX	54498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4155893	4155893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SMOX	NM_175839	exon2	c.T191C	p.V64A	GCCGTGTGCAGAG	.	95.0	36.0	106.0	0.0	.	153
SOGA2	23255	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8825710	8825710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_015210	exon15	c.C4202A	p.P1401H	CCCTCCCCAAAGC	.	235.0	95.0	305.0	2.0	.	.
SOHLH1	402381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138589403	138589403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SOHLH1	NM_001012415	exon4	c.A416T	p.Q139L	TGAATCTGACTCG	.	67.0	30.0	98.0	0.0	.	135
SORT1	6272	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109910100	109910100	+	Missense_Mutation	SNP	T	T	C	rs61797119	byfrequency	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SORT1	NM_002959	exon3	c.A370G	p.I124V	CTAGAATGACCTG	.	58.0	24.0	65.0	0.0	T|0.995;C|0.005	91
SOX12	6666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	306791	306791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SOX12	NM_006943	exon1	c.G223A	p.G75S	CGCCTGGGCCGCC	.	123.0	51.0	155.0	0.0	.	514
SPACA1	81833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	88757710	88757710	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPACA1	NM_030960	exon1	c.G87A	p.G29G	GCGCGGGACCAAC	.	119.0	51.0	114.0	0.0	.	90
SPATA22	84690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3349813	3349813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPATA22	NM_032598	exon7	c.A755G	p.Y252C	CGCCAATACTTCA	.	409.0	155.0	423.0	0.0	.	90
SPATA5L1	79029	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	45694903	45694903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPATA5L1	NM_024063	exon1	c.G276C	p.R92S	CCGGAGGAGTCTC	.	14.0	8.0	10.0	0.0	.	94
SPOCK3	50859	broad.mit.edu;bcgsc.ca	37	4	168155255	168155255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPOCK3	NM_016950	exon2	c.G70T	p.A24S	CCGCCGCGGCAGC	.	109.0	42.0	129.0	1.0	.	136
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158632708	158632708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPTA1	NM_003126	exon17	c.G2248C	p.A750P	ATGCAGCCAGGTC	.	209.0	10.0	148.0	0.0	.	142
SPTBN1	6711	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54882216	54882216	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPTBN1	NM_003128	exon28	c.A5832G	p.S1944S	TGTATCATCTGTT	.	113.0	45.0	123.0	1.0	.	140
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41071395	41071395	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPTBN4	NM_020971	exon28	c.G5982A	p.R1994R	GGCGCGGGTGCCT	.	116.0	48.0	110.0	0.0	.	94
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30749727	30749727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SRCAP	NM_006662	exon34	c.G8366A	p.G2789E	GCCCGGGAAGCCC	.	66.0	9.0	79.0	0.0	.	94
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119554788	119554788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SRRM4	NM_194286	exon4	c.A412T	p.S138C	AAGAAAAGTTCCA	.	60.0	25.0	70.0	0.0	.	2
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52554842	52554842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STAB1	NM_015136	exon55	c.G5729T	p.R1910L	GCTGGCGCTTCTA	.	42.0	32.0	54.0	0.0	.	139
STEAP3	55240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	120020691	120020691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STEAP3	NM_182915	exon6	c.G1274T	p.W425L	ACGGCTGGACCCG	.	47.0	21.0	41.0	0.0	.	91
STK10	6793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	171509351	171509351	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STK10	NM_005990	exon12	c.G1968A	p.Q656Q	TTTGAGCTGCTCT	.	67.0	27.0	100.0	0.0	.	1022
STK35	140901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2097911	2097911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STK35	NM_080836	exon3	c.A1492G	p.M498V	ACTTCCATGTCTG	.	80.0	40.0	127.0	0.0	.	334
STMN2	11075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	80553736	80553736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STMN2	NM_007029	exon3	c.C239T	p.S80F	ACCTGTCCCTGGA	.	300.0	20.0	266.0	0.0	.	515
SUCLG1	8802	ucsc.edu;bcgsc.ca	37	2	84668526	84668526	+	Missense_Mutation	SNP	C	C	A	rs146102400	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SUCLG1	NM_003849	exon4	c.G376T	p.A126S	CAGCAGCAGCAAA	.	260.0	98.0	327.0	2.0	C|1.000;T|0.000	90
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104268957	104268957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SUFU	NM_001178133	exon2	c.A214T	p.S72C	TATGTTAGCATGT	.	130.0	89.0	150.0	0.0	.	2246
SUPT20HL1	100130302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	24383280	24383280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001136234	exon1	c.G2403T	p.Q801H	ACCGCAGTGGCAG	.	77.0	66.0	121.0	1.0	.	.
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	113341549	113341549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SVEP1	NM_153366	exon1	c.C275T	p.S92F	ACGCTGGACGAAT	.	51.0	21.0	60.0	0.0	.	75
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113168473	113168473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SVEP1	NM_153366	exon38	c.A9407T	p.E3136V	TGTGCCTCTCCAG	.	153.0	62.0	145.0	0.0	.	75
SYK	6850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	93650165	93650165	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYK	NM_003177	exon12	c.A1716G	p.P572P	GAAGCCATATCGA	.	97.0	40.0	111.0	0.0	.	1402
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152765648	152765648	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYNE1	NM_033071	exon30	c.C3756A	p.L1252L	TTCTTCGAGAGAA	.	60.0	33.0	101.0	0.0	.	607
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64519465	64519465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYNE2	NM_182914	exon48	c.G8834A	p.C2945Y	AGTTTTGCAGACA	.	139.0	50.0	133.0	1.0	.	164
SYT2	127833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202571584	202571584	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYT2	NM_177402	exon5	c.T555A	p.P185P	CTTGTCAGGAAGG	.	132.0	99.0	77.0	0.0	.	93
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51128790	51128790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYT3	NM_032298	exon6	c.G1434T	p.E478D	CCGCCCCTCGCTG	.	84.0	27.0	114.0	0.0	.	155
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32632432	32632432	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TAF1L	NM_153809	exon1	c.G3146C	p.R1049P	ATTGTGCGCACCA	.	217.0	81.0	215.0	0.0	.	870
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160087091	160087091	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TANC1	NM_033394	exon27	c.C5154A	p.P1718P	CAGACCCCGCAAC	.	111.0	43.0	135.0	0.0	.	92
TCEB3CL2	100506888	bcgsc.ca;mdanderson.org	37	18	44543310	44543310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001242907	exon1	c.C1062G	p.D354E	TTCCACGTCGCCG	.	293.0	18.0	351.0	0.0	.	.
TCF4	6925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	53303052	53303052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TCF4	NM_001243226	exon1	c.A77T	p.Y26F	TTTGAGTAATTTG	.	116.0	40.0	120.0	0.0	.	523
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152081242	152081242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TCHH	NM_007113	exon3	c.A4451G	p.D1484G	TTTCTGTCACGCT	.	246.0	49.0	147.0	0.0	.	72
TCN1	6947	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59623413	59623413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TCN1	NM_001062	exon6	c.A866T	p.Q289L	AAGACCTGGGCTG	.	264.0	66.0	205.0	1.0	.	92
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104460669	104460669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TDRD9	NM_153046	exon10	c.G1181T	p.G394V	CCCTAGGTCTGGG	.	77.0	29.0	63.0	0.0	.	70
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27203079	27203079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TEK	NM_000459	exon13	c.C2171A	p.A724D	ACCCAGCCTTTTC	.	134.0	56.0	185.0	0.0	.	1584
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183659668	183659668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001080477	exon17	c.A3350G	p.D1117G	CATTAGATAAACA	.	86.0	41.0	88.0	0.0	.	.
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69772028	69772028	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TEX11	NM_001003811	exon29	c.T2513A	p.L838Q	TCTTCCAGGGGAC	.	467.0	215.0	326.0	1.0	.	178
THOP1	7064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2810300	2810300	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	THOP1	NM_003249	exon10	c.1456-2A>T	.	CCCTGCAGGCGGA	.	45.0	19.0	61.0	0.0	.	92
THRSP	7069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77775013	77775013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	THRSP	NM_003251	exon1	c.A86G	p.Q29R	TGGAGCAGGTGGT	.	70.0	32.0	63.0	0.0	.	69
TIGD5	84948	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144681732	144681732	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TIGD5	NM_032862	exon1	c.G1659A	p.L553L	AGCCCTGCCCCCT	.	75.0	27.0	46.0	2.0	.	90
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186997908	186997908	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TLR3	NM_003265	exon2	c.A135C	p.V45V	TCAGGTACCCGAT	.	105.0	41.0	135.0	0.0	.	524
TLX1NB	100038246	broad.mit.edu;mdanderson.org	37	10	102849344	102849344	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001085398	exon3	c.C319A	p.R107R	TTCTCCGTAGGCG	.	99.0	59.0	78.0	2.0	.	.
TM9SF4	9777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30738606	30738606	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TM9SF4	NM_014742	exon12	c.G1173T	p.V391V	CAGGGTGTTTGGC	.	110.0	50.0	133.0	0.0	.	514
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	75404071	75404071	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMC1	NM_138691	exon15	c.A1062T	p.V354V	CCAAGTAGAAGAA	.	139.0	8.0	130.0	0.0	.	91
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	126138603	126138603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM132B	NM_052907	exon9	c.A2584G	p.K862E	TTACTCAAAAGTG	.	91.0	44.0	132.0	0.0	.	185
TMEM151B	441151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	44243711	44243711	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001137560	exon3	c.T1148A	p.L383Q	AGCAGCTGGTGCC	.	59.0	18.0	36.0	0.0	.	.
TMEM179	388021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105070865	105070865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM179	NM_207379	exon1	c.C214T	p.R72C	TGAAGCGGCAGGC	.	43.0	19.0	63.0	0.0	.	514
TMEM79	84283	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255759	156255759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM79	NM_032323	exon2	c.T742A	p.F248I	GCCACCTTCCCCA	.	143.0	95.0	83.0	1.0	.	90
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69097054	69097054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMF1	NM_007114	exon2	c.A802G	p.I268V	CACTTATTACACT	.	68.0	30.0	58.0	0.0	.	90
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68780363	68780363	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMPRSS11A	NM_182606	exon9	c.T1047C	p.D349D	TTTTATATCATTG	.	235.0	30.0	251.0	0.0	.	69
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68795630	68795630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMPRSS11A	NM_182606	exon5	c.T458C	p.L153S	ATTGGCAAGGCTC	.	165.0	79.0	213.0	0.0	.	69
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72188978	72188978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNPO1	NM_002270	exon16	c.G1801T	p.V601F	TCTTCAGTTGCCA	.	104.0	45.0	80.0	0.0	.	228
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72201205	72201205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNPO1	NM_002270	exon24	c.A2665G	p.K889E	CCCTTAAAAGAGC	.	75.0	26.0	77.0	0.0	.	228
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40708962	40708962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNRC6B	NM_001162501	exon19	c.G4639T	p.A1547S	TACAGTGCCTCTG	.	106.0	39.0	110.0	0.0	.	22
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218750502	218750502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNS1	NM_022648	exon13	c.A706G	p.I236V	GCTCGATGGTGAT	.	74.0	29.0	72.0	0.0	.	156
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47342734	47342734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNS3	NM_022748	exon22	c.A3271T	p.T1091S	GCAGGGTCACACC	.	100.0	11.0	112.0	0.0	.	94
TPBG	7162	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	83074944	83074944	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TPBG	NM_001166392	exon2	c.T266A	p.L89Q	CGGACCTGCCCGC	.	24.0	8.0	39.0	0.0	.	514
TPH2	121278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72425319	72425319	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TPH2	NM_173353	exon11	c.T1317C	p.I439I	GTCAATTACCCGT	.	141.0	60.0	156.0	0.0	.	93
TPRA1	131601	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127298924	127298924	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TPRA1	NM_001142646	exon2	c.A66G	p.P22P	GATGTTTGGTGCC	.	39.0	4.0	52.0	0.0	.	90
TRHR	7201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110100121	110100121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRHR	NM_003301	exon1	c.T380G	p.I127S	TAGCAATCTGTCA	.	416.0	77.0	237.0	0.0	.	620
TRIM28	10155	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59057222	59057222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRIM28	NM_005762	exon3	c.A545G	p.Q182R	CGCACCAGCGGGT	.	123.0	48.0	124.0	1.0	.	870
TRPA1	8989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	72938310	72938310	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRPA1	NM_007332	exon26	c.2938-2A>T	.	TCCACCTAAAGTG	.	111.0	58.0	69.0	1.0	.	230
TRPC6	7225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101375282	101375282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRPC6	NM_004621	exon2	c.G418T	p.A140S	CCACTGCCAACTG	.	97.0	40.0	120.0	0.0	.	93
TSNAX	7257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231700443	231700443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TSNAX	NM_005999	exon6	c.G665T	p.R222L	TTTTACGTCAGGT	.	359.0	240.0	237.0	0.0	.	90
TTC25	83538	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	40117322	40117322	+	RNA	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTC25	.	.	.	.	TATAGGAGGCCTT	.	135.0	50.0	135.0	0.0	.	23
TTK	7272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80746315	80746315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTK	NM_003318	exon17	c.A2048G	p.Q683R	ATTCTCAGGTAAG	.	104.0	39.0	87.0	0.0	.	1299
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179544108	179544108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTN	NM_001267550	exon142	c.C33700A	p.P11234T	GCACAGGAACTTT	.	136.0	48.0	168.0	1.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179431803	179431803	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTN	NM_001267550	exon326	c.A79056G	p.L26352L	ACCTTCTAAGAGT	.	119.0	43.0	120.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179587117	179587117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTN	NM_001267550	exon77	c.A22397C	p.Q7466P	GAAGTCTGTAGAT	.	98.0	38.0	109.0	0.0	.	636
TUBB2B	347733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	3227741	3227741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TUBB2B	NM_178012	exon1	c.G37T	p.G13C	GGTTGCCGCACTG	.	37.0	11.0	21.0	0.0	.	153
TYR	7299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88911129	88911129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TYR	NM_000372	exon1	c.T8A	p.L3Q	TGCTCCTGGCTGT	.	57.0	28.0	103.0	0.0	.	92
U2AF2	11338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56173908	56173908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	U2AF2	NM_001012478	exon6	c.G527T	p.G176V	GCCTGGGGGGGCT	.	131.0	52.0	156.0	1.0	.	91
UBL4B	164153	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	110655547	110655547	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UBL4B	NM_203412	exon1	c.G391T	p.E131X	CACCTGGAGCAGC	.	98.0	37.0	117.0	1.0	.	69
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19433356	19433356	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UBR4	NM_020765	exon82	c.C12210T	p.A4070A	CTTCCAGGCATCA	.	184.0	83.0	255.0	0.0	.	612
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	132393332	132393332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ULK1	NM_003565	exon6	c.G460T	p.A154S	CGCCGCGCCAACC	.	37.0	19.0	44.0	0.0	.	758
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43496123	43496123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UMODL1	NM_173568	exon2	c.T86A	p.L29H	AAGGCCTCTCCCT	.	92.0	34.0	131.0	0.0	.	93
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94046694	94046694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_020818	exon19	c.T2102A	p.L701Q	AGAGACTAGCTCC	.	104.0	53.0	102.0	0.0	.	.
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210805966	210805966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UNC80	NM_032504	exon43	c.T6470C	p.L2157P	TTGGCCTCGACAC	.	112.0	52.0	135.0	0.0	.	90
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	8988707	8988707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	USP7	NM_003470	exon29	c.G3045T	p.E1015D	AAAATGCTCGCCC	.	88.0	33.0	104.0	0.0	.	661
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72868323	72868323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UTP15	NM_032175	exon7	c.A683G	p.Y228C	GTCGTTATGTTAA	.	143.0	56.0	173.0	0.0	.	90
VBP1	7411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154444801	154444801	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VBP1	NM_003372	exon1	c.C42G	p.A14A	AATGGCCACAGGG	.	130.0	72.0	69.0	0.0	.	226
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157031464	157031464	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VEPH1	NM_001167912	exon11	c.G1956T	p.G652G	AGCACCCCCTGCC	.	91.0	33.0	103.0	0.0	.	155
VRTN	55237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74825421	74825421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VRTN	NM_018228	exon2	c.G1935T	p.M645I	GGACATGATCGCT	.	126.0	48.0	125.0	0.0	.	155
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98797635	98797635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VWA3B	NM_144992	exon9	c.T1271C	p.I424T	TGGATATAAAAGC	.	125.0	48.0	196.0	0.0	.	139
VWA7	80737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31735467	31735467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_025258	exon11	c.G1568T	p.G523V	AGCAGCCCATCCA	.	190.0	42.0	108.0	0.0	.	.
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	49982657	49982657	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDFY4	NM_020945	exon14	c.C2708A	p.S903X	TCCACTCACGCCT	.	137.0	43.0	87.0	0.0	.	22
WDR43	23160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29169340	29169340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR43	NM_015131	exon17	c.A1829T	p.D610V	CTGATGATGAAAT	.	126.0	44.0	120.0	0.0	.	69
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109525342	109525342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR47	NM_001142550	exon12	c.G2179A	p.G727S	CTGGGCCTTCCAT	.	138.0	61.0	133.0	0.0	.	91
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122413230	122413230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR66	NM_144668	exon18	c.A2852G	p.K951R	AAGGAAAATTCTA	.	156.0	55.0	200.0	0.0	.	92
WDR70	55100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37721261	37721261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR70	NM_018034	exon14	c.G1461A	p.M487I	GATCATGGTTGGA	.	153.0	63.0	176.0	0.0	.	187
WDR87	83889	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38377306	38377306	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_031951	exon6	c.G6888A	p.K2296K	CTCCTCCTTCTTC	.	210.0	93.0	224.0	1.0	.	.
WDR93	56964	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	90272996	90272996	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR93	NM_020212	exon11	c.A1206G	p.K402K	GGATAAAGCTGGT	.	93.0	5.0	135.0	0.0	.	24
WFDC3	140686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44405762	44405762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WFDC3	NM_080614	exon5	c.T445A	p.C149S	TGCAGCATTTATG	.	151.0	62.0	190.0	0.0	.	90
WFDC3	140686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44418554	44418554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WFDC3	NM_080614	exon2	c.T61A	p.W21R	TTATCCAGGATTC	.	66.0	20.0	115.0	0.0	.	90
WNT4	54361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22446623	22446623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WNT4	NM_030761	exon5	c.T976C	p.C326R	AGCTGCAGCGTTC	.	33.0	15.0	57.0	0.0	.	524
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	28137133	28137141	+	In_Frame_Del	DEL	CGGCAGTCG	CGGCAGTCG	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	CGGCAGTCG	CGGCAGTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	XPO6	NM_015171	exon13	c.1635_1643del	p.545_548del	AGCCGCCGGCAGT	.	51.0	17.0	71.0	0.0	.	227
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142145680	142145680	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	XRN1	NM_001042604	exon3	c.A312T	p.S104S	CTTTGCTGACCTT	.	68.0	40.0	94.0	0.0	.	93
YIF1B	90522	broad.mit.edu;bcgsc.ca	37	19	38798334	38798334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	YIF1B	NM_001039672	exon6	c.G598A	p.E200K	GCACCTCCAGGGT	.	63.0	27.0	97.0	2.0	.	68
ZBED2	79413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111312691	111312691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBED2	NM_024508	exon2	c.C358A	p.Q120K	GGCGCTGCCCAGC	.	67.0	30.0	70.0	0.0	.	91
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173842760	173842760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBTB37	NM_032522	exon4	c.A1079T	p.Y360F	CTGTGTATGAATA	.	234.0	38.0	130.0	0.0	.	90
ZBTB39	9880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57397645	57397645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBTB39	NM_014830	exon2	c.G1057C	p.E353Q	TGGGCTCTAGAAC	.	117.0	48.0	128.0	0.0	.	135
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88961390	88961390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZCCHC6	NM_024617	exon3	c.A526G	p.K176E	GCTTCTTGTTTTC	.	90.0	28.0	118.0	0.0	.	92
ZDHHC13	54503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19170823	19170823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZDHHC13	NM_019028	exon5	c.T464A	p.L155Q	TCCACCTGGCAGT	.	124.0	55.0	133.0	1.0	.	90
ZDHHC13	54503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19170802	19170802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZDHHC13	NM_019028	exon5	c.A443C	p.E148A	ATGGAGAGGGATT	.	134.0	51.0	135.0	0.0	.	90
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69256435	69256435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZFP36L1	NM_001244701	exon3	c.C1039A	p.L347I	GGAAGAGGAAGGT	.	63.0	34.0	96.0	0.0	.	91
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106813578	106813578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	ZFPM2,NS,carcinoma,-1	ZFPM2	NM_012082	exon8	c.G1268A	p.S423N	CCCAGAGCCAAAA	.	299.0	134.0	149.0	0.0	.	139
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52761649	52761649	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZFYVE9	NM_004799	exon12	c.A3333G	p.A1111A	TCTTGCAGTAAGT	.	102.0	43.0	115.0	0.0	.	230
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62366141	62366141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZGPAT	NM_032527	exon5	c.G1016T	p.R339I	GCTCCAGACTCCT	.	94.0	35.0	88.0	0.0	.	90
ZIM3	114026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	57646378	57646378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZIM3	NM_052882	exon5	c.G1327T	p.G443X	TTTGTCCAGTATG	.	127.0	50.0	143.0	0.0	.	92
ZMYND15	84225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	4649179	4649179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZMYND15	NM_001267822	exon14	c.C2147A	p.A716E	GCCCGGCGCCCGG	.	245.0	129.0	315.0	0.0	.	90
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9499989	9499989	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF143	NM_003442	exon6	c.A426T	p.T142T	TACCACAGCTTAT	.	75.0	22.0	98.0	0.0	.	90
ZNF256	10172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58452722	58452722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF256	NM_005773	exon3	c.A1454G	p.H485R	CCAGTATGAACTT	.	56.0	21.0	60.0	0.0	.	92
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44892183	44892183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF285	NM_152354	exon4	c.A224C	p.Q75P	CAAATCTGCCAGC	.	175.0	67.0	197.0	0.0	.	94
ZNF287	57336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16470686	16470686	+	Silent	SNP	T	T	C	rs201476319	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF287	NM_020653	exon2	c.A360G	p.A120A	AGTCACTGCTTCC	.	85.0	35.0	98.0	1.0	T|0.999;G|0.001	90
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53303548	53303548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF28	NM_006969	exon4	c.A1550G	p.H517R	CCAGTATGAACTC	.	65.0	21.0	104.0	0.0	.	91
ZNF311	282890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28962885	28962885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF311	NM_001010877	exon7	c.A1894G	p.R632G	GTTTTCTTTTCTT	.	208.0	38.0	130.0	0.0	.	22
ZNF330	27309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	142145639	142145639	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF330	NM_014487	exon3	c.121-2A>T	.	TGTTACAGGAATG	.	354.0	156.0	349.0	0.0	.	90
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45130946	45130946	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF334	NM_018102	exon5	c.A1032T	p.T344T	CTCCCCTGTGTGT	.	97.0	40.0	107.0	0.0	.	92
ZNF451	26036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	57011970	57011970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF451	NM_001031623	exon10	c.T1087A	p.Y363N	AGAGGTTATTGTC	.	345.0	65.0	169.0	1.0	.	93
ZNF451	26036	ucsc.edu;bcgsc.ca	37	6	57011971	57011971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF451	NM_001031623	exon10	c.A1088T	p.Y363F	GAGGTTATTGTCC	.	345.0	64.0	170.0	2.0	.	93
ZNF473	25888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50549039	50549039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF473	NM_015428	exon5	c.A1339G	p.N447D	CACCTTAATGAAC	.	104.0	45.0	106.0	1.0	.	91
ZNF483	158399	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114289679	114289679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF483	NM_133464	exon2	c.C4A	p.Q2K	ACAATGCAAGCTG	.	117.0	9.0	104.0	0.0	.	91
ZNF496	84838	broad.mit.edu;ucsc.edu	37	1	247492170	247492170	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF496	NM_032752	exon5	c.391-2A>G	.	TTGAGCTGCAATC	.	68.0	13.0	75.0	2.0	.	91
ZNF521	25925	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	22805628	22805628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF521	NM_015461	exon4	c.T2254A	p.Y752N	ACCTATAGACTTT	.	82.0	36.0	78.0	1.0	.	275
ZNF676	163223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22375842	22375842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF676	NM_001001411	exon2	c.C106A	p.H36N	TCTCATGTCTCTT	.	63.0	14.0	107.0	1.0	.	90
ZNF678	339500	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	227834348	227834348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF678	NM_178549	exon3	c.A227G	p.N76S	TCGAGAACTACAG	.	100.0	69.0	60.0	1.0	.	91
ZNF683	257101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26694278	26694278	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_173574	exon3	c.C125G	p.A42G	CTGCAGGCTGAGA	.	75.0	36.0	107.0	0.0	.	.
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151262629	151262630	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF687	NM_020832	exon7	c.2996_2997insG	p.E999fs	TGTGTGAGCGCTC	.	164.0	30.0	114.0	0.0	.	92
ZNF707	286075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144776308	144776308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF707	NM_001100598	exon6	c.A724G	p.S242G	GCGTTCAGCCTGA	.	89.0	10.0	49.0	0.0	.	67
ZNF708	7562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	21477081	21477081	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF708	NM_021269	exon4	c.T687A	p.C229X	TTTTCCACATTCT	.	32.0	15.0	27.0	0.0	.	516
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35260758	35260758	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF76	NM_003427	exon11	c.G1266T	p.A422A	GGTGGCGATGGTG	.	239.0	58.0	160.0	0.0	.	90
ZNF786	136051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	148767562	148767562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF786	NM_152411	exon4	c.A2302G	p.K768E	GCCTTTTCTTAAT	.	138.0	58.0	111.0	0.0	.	50
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5455751	5455751	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNRF4	NM_181710	exon1	c.C249T	p.V83V	GGCAGTCAAAGCC	.	25.0	11.0	31.0	0.0	.	135
ZSCAN23	222696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28402633	28402633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZSCAN23	NM_001012455	exon4	c.A779G	p.Q260R	GAATTCTGGGTGA	.	275.0	66.0	148.0	0.0	.	68
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3937451	3937451	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZZEF1	NM_015113	exon40	c.T6442C	p.L2148L	CTGGCAAAAGACG	.	202.0	78.0	199.0	0.0	.	93
ZNF479	90827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	57188114	57188115	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	.	.	.	p.W336F	TGAGGACCAGCTA	.	188.0	67.0	202.0	0.0	.	.
