Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AIM1	202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106978191	106978191	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AIM1	NM_001624	exon6	c.3494+1G>T	.	GGGCACGTAAGTA	.	114.0	26.0	142.0	1.0	.	139
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105464456	105464456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALDH1L2	NM_001034173	exon3	c.T320C	p.F107S	GTGCAGAAAGGGA	.	335.0	62.0	307.0	0.0	.	91
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73800105	73800105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALMS1	NM_015120	exon16	c.C11098T	p.H3700Y	TCTCATCATCGAG	.	153.0	18.0	138.0	0.0	.	142
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	73677972	73677972	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ALMS1	NM_015120	exon8	c.C4315T	p.Q1439X	TTCTACCAACAGG	.	246.0	23.0	304.0	0.0	.	142
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33567266	33567266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001244752	exon14	c.G2719T	p.A907S	GCCTTTGCAGTAG	.	436.0	59.0	372.0	0.0	.	.
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	22297639	22297639	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ANO5	NM_001142649	exon21	c.2412-1G>-	.	TTTTCAGGTACAG	.	287.0	31.0	200.0	0.0	.	515
ATXN7L1	222255	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105254791	105254791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ATXN7L1	NM_020725	exon10	c.A1990G	p.T664A	GGGATGTCTGCAA	.	466.0	82.0	402.0	1.0	.	90
AXIN2	8313	broad.mit.edu;bcgsc.ca	37	17	63532595	63532595	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	AXIN2	NM_004655	exon8	c.C1984T	p.L662L	CCCACAGATGGTG	.	123.0	18.0	57.0	0.0	.	658
BCDIN3D	144233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50236856	50236856	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	BCDIN3D	NM_181708	exon1	c.G15T	p.T5T	CAGTTCCGTGGGC	.	88.0	16.0	55.0	0.0	.	69
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	75037157	75037157	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	C1orf173	NM_001002912	exon14	c.G4237T	p.E1413X	CTTCCTCCCCACT	.	299.0	41.0	358.0	0.0	.	94
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135413022	135413022	+	Missense_Mutation	SNP	C	C	T	rs182716958	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	C9orf171	NM_207417	exon5	c.C667T	p.R223W	CAGCACCGGTACC	.	138.0	29.0	124.0	0.0	C|0.865;A|0.135	157
CACNA1E	777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181688911	181688911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CACNA1E	NM_001205293	exon13	c.G1663A	p.V555M	TTTGAAGTGGTCT	.	445.0	44.0	360.0	1.0	.	95
CCDC155	147872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49920647	49920647	+	Silent	SNP	C	C	A	rs182291239	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CCDC155	NM_144688	exon20	c.C1569A	p.I523I	ACTGATCCCAGCT	.	137.0	30.0	105.0	0.0	C|0.999;T|0.000	69
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103430853	103430853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CDC42BPB	NM_006035	exon19	c.C2712A	p.N904K	GGTGAGGTTGGCG	.	60.0	13.0	58.0	0.0	.	581
CEACAM4	1089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42132051	42132051	+	Missense_Mutation	SNP	G	G	T	rs199959927	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CEACAM4	NM_001817	exon2	c.C348A	p.D116E	TCCTGCGTCCTCC	.	590.0	108.0	540.0	0.0	G|0.999;A|0.001	90
CHM	1121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85218969	85218969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CHM	NM_000390	exon5	c.G403C	p.D135H	CAGAATCTGCAGC	.	320.0	63.0	254.0	1.0	.	131
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139838990	139838990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	COL22A1	NM_152888	exon6	c.G880T	p.A294S	CAAAGGCGTACTC	.	138.0	35.0	121.0	0.0	.	103
COMMD6	170622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	76111799	76111799	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	COMMD6	NM_203497	exon3	c.54+1G>T	.	CACCCACCTGGTT	.	78.0	13.0	63.0	0.0	.	90
CSMD3	114788	broad.mit.edu;bcgsc.ca	37	8	113402913	113402913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CSMD3	NM_198123	exon36	c.C5914T	p.P1972S	CCTCTGGCACTGT	.	123.0	6.0	98.0	0.0	.	1132
CUL7	9820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43012996	43012996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CUL7	NM_001168370	exon15	c.G3259A	p.D1087N	TGCGGTCCTCTGC	.	125.0	9.0	112.0	0.0	.	229
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156768087	156768087	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	CYFIP2	NM_001037332	exon23	c.G2595T	p.R865R	TGTGCGGACTGCC	.	251.0	42.0	245.0	0.0	.	22
DGKG	1608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185986694	185986694	+	Missense_Mutation	SNP	C	C	G	rs199552752	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DGKG	NM_001346	exon12	c.G1012C	p.A338P	CCCATGCGTGCTG	.	63.0	6.0	54.0	0.0	.	714
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124387605	124387605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DNAH10	NM_207437	exon56	c.G9406A	p.E3136K	ATCCTGGAGGCCG	.	96.0	19.0	112.0	0.0	.	95
DPEP2	64174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68027109	68027109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	DPEP2	NM_022355	exon2	c.C7A	p.P3T	CGGAGGGCTGCAT	.	68.0	17.0	47.0	0.0	.	91
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	25898461	25898461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EBF2	NM_022659	exon3	c.A346C	p.S116R	CGTTGCTGTAGAG	.	647.0	62.0	562.0	0.0	.	26
EPG5	57724	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	43460188	43460188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EPG5	NM_020964	exon32	c.G5519T	p.S1840I	GCGGAGCCTGCCA	.	63.0	12.0	53.0	0.0	.	580
ESPN	83715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6520166	6520166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ESPN	NM_031475	exon13	c.G2525T	p.R842L	GGCAGCGACAGGT	.	203.0	38.0	164.0	0.0	.	514
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133314872	133314872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	EXOC4	NM_021807	exon10	c.G1492T	p.V498F	ATTACCGTCATAT	.	140.0	21.0	184.0	0.0	.	159
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74047313	74047313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GFM2	NM_032380	exon6	c.G310A	p.D104N	CATCATCAACATC	.	188.0	24.0	168.0	0.0	.	90
GNRH2	2797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3025397	3025397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GNRH2	NM_001501	exon3	c.C227T	p.P76L	TGGCTCCCCTGGA	.	110.0	12.0	96.0	0.0	.	90
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45017921	45017921	+	Missense_Mutation	SNP	G	G	T	rs147434599	byfrequency;alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GOSR2	NM_054022	exon7	c.G584T	p.G195V	CCCCAGGCACCCA	.	56.0	17.0	31.0	0.0	G|0.999;C|0.001	92
GRAP2	9402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40343142	40343142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GRAP2	NM_004810	exon2	c.C32A	p.A11D	TCACTGCTTCAGG	.	263.0	68.0	338.0	0.0	.	227
GRHL2	79977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	102611376	102611376	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	GRHL2	NM_024915	exon8	c.G1095A	p.A365A	AGAGGCGAAGGTG	.	298.0	60.0	304.0	0.0	.	93
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18633535	18633535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	HDAC9	NM_001204144	exon8	c.G664A	p.A222T	AGGGCTGCCCACC	.	146.0	23.0	216.0	0.0	.	227
IVNS1ABP	10625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185274712	185274712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	IVNS1ABP	NM_006469	exon8	c.G721T	p.A241S	CCTCAGCCTGTCC	.	297.0	106.0	259.0	0.0	.	94
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34647292	34647292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KIAA1328	NM_020776	exon7	c.G1016C	p.R339P	ATTGTCGGCTTTC	.	435.0	68.0	538.0	0.0	.	90
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	32137832	32137832	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_018169	exon4	c.G3943T	p.E1315X	TCTTATGAACAAG	.	153.0	20.0	118.0	0.0	.	.
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	39726715	39726715	+	Silent	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KIF21A	NM_001173464	exon19	c.G2682C	p.T894T	TGCCGGCGTTGGT	.	187.0	37.0	177.0	0.0	.	97
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39522752	39522752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRT33B	NM_002279	exon3	c.G558T	p.E186D	CAGCAGCTCCTCC	.	95.0	19.0	128.0	0.0	.	90
KRT5	3852	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52910560	52910560	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRT5	NM_000424	exon7	c.G1300T	p.E434X	CCAGCTCGGCCAG	.	202.0	28.0	206.0	1.0	.	90
KRTAP19-4	337971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31869199	31869199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	KRTAP19-4	NM_181610	exon1	c.G230T	p.R77I	AATGATCTTCTTA	.	239.0	32.0	250.0	0.0	.	70
L3MBTL4	91133	ucsc.edu;bcgsc.ca	37	18	6138293	6138293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	L3MBTL4	NM_173464	exon14	c.A1099G	p.T367A	CATTCGTTCCTTC	.	42.0	4.0	44.0	0.0	.	93
LCOR	84458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	98715171	98715171	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LCOR	NM_001170766	exon8	c.794delG	p.W265fs	TTTCTTGGGAGTC	.	138.0	23.0	157.0	0.0	.	189
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11213382	11213382	+	Missense_Mutation	SNP	G	G	T	rs146675823	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LDLR	NM_001195800	exon3	c.G233T	p.R78L	GGGGCCGTGTCAA	.	230.0	44.0	230.0	0.0	G|1.000;A|0.000	94
LONP2	83752	ucsc.edu;bcgsc.ca	37	16	48286049	48286049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LONP2	NM_031490	exon2	c.A241G	p.T81A	ATTGGCACAGCTG	.	58.0	6.0	62.0	0.0	.	90
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40137653	40137653	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LRRC4C	NM_001258419	exon7	c.C190A	p.R64R	TTTTCCGAACACA	.	155.0	20.0	157.0	0.0	.	521
LTA4H	4048	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	96406996	96406996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	LTA4H	NM_000895	exon14	c.A1349C	p.Y450S	GGAGAGTAGAGCC	.	171.0	24.0	166.0	1.0	.	91
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	75004287	75004287	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MAGEE2	NM_138703	exon1	c.G600A	p.W200X	CAAGTCCCAAATG	.	110.0	26.0	69.0	0.0	.	132
MAST2	23139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46485312	46485312	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MAST2	NM_015112	exon11	c.G1233A	p.Q411Q	GATGCAGCTGGTG	.	157.0	26.0	188.0	0.0	.	581
MC4R	4160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	58039123	58039123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MC4R	NM_005912	exon1	c.G460T	p.A154S	GGAGAGCATAGAA	.	99.0	14.0	121.0	0.0	.	522
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168819859	168819859	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MECOM	NM_004991	exon11	c.C2760T	p.R920R	GGTATAGCGCTCC	.	153.0	24.0	172.0	0.0	.	853
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49443882	49443882	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MLL2	NM_003482	exon11	c.G3489T	p.V1163V	AGGGGTCACAGGG	.	157.0	23.0	124.0	0.0	.	612
MLST8	64223	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2256103	2256103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MLST8	NM_001199174	exon2	c.G17C	p.G6A	CCCCAGGCACGGT	.	114.0	38.0	103.0	1.0	.	392
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38289863	38289868	+	In_Frame_Del	DEL	CAGGAA	CAGGAA	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	CAGGAA	CAGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MSL1	NM_001012241	exon8	c.844_849del	p.282_283del	GGAATTCAGGAAT	.	104.0	17.0	129.0	0.0	.	68
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56582859	56582859	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MTMR4	NM_004687	exon11	c.G1077T	p.V359V	GCTACACACAGCC	.	152.0	26.0	121.0	0.0	.	91
MTMR7	9108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17198946	17198946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MTMR7	NM_004686	exon6	c.G658A	p.E220K	TCTGCTCGTCCTC	.	88.0	23.0	102.0	1.0	.	91
MUTYH	4595	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45795060	45795060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MUTYH	NM_001128425	exon16	c.G1568T	p.R523L	CCCATGCGGGGCT	.	326.0	50.0	244.0	1.0	.	1083
MYH7	4625	hgsc.bcm.edu;broad.mit.edu	37	14	23889251	23889251	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYH7	NM_000257	exon27	c.3529delG	p.D1177fs	CCAGGTCCCGCCG	.	330.0	34.0	189.0	0.0	.	94
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171260816	171260816	+	Silent	SNP	G	G	T	rs201316029	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYO3B	NM_001083615	exon20	c.G2337T	p.P779P	CCGCCCGCTCTTG	.	210.0	41.0	225.0	0.0	G|0.999;A|0.001	530
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128335798	128335798	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	MYO7B	NM_001080527	exon9	c.G940T	p.E314X	GACTCCGAGAGCT	.	171.0	24.0	140.0	0.0	.	47
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46279951	46279951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NCOA3	NM_181659	exon20	c.G3877T	p.D1293Y	AGCATGGATGGGC	.	133.0	22.0	139.0	0.0	.	229
NEXN	91624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	78407772	78407772	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	NEXN	NM_144573	exon12	c.T1538A	p.M513K	TGAATATGAAAGC	.	299.0	43.0	339.0	0.0	.	92
NXPE4	54827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114453455	114453455	+	Missense_Mutation	SNP	G	G	A	rs111330181		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_001077639	exon3	c.C385T	p.R129C	TCCTGCGTCCCAA	.	443.0	59.0	456.0	0.0	A|1.000;|0.000	.
OR2T12	127064	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248458244	248458244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR2T12	NM_001004692	exon1	c.C637A	p.L213M	AGGACAGGATGAG	.	1594.0	243.0	1449.0	2.0	.	71
OR2Z1	284383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8842140	8842140	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR2Z1	NM_001004699	exon1	c.C750A	p.L250L	GGGGCTCTTTTAT	.	231.0	33.0	172.0	1.0	.	69
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135486	55135486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR4A15	NM_001005275	exon1	c.T127C	p.L43L	ATCCTCTTAGGGC	.	220.0	35.0	262.0	0.0	.	70
OR52R1	119695	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4825512	4825512	+	Silent	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR52R1	NM_001005177	exon1	c.G99T	p.P33P	ACAGAACGGAAAG	.	132.0	20.0	148.0	1.0	.	69
OR5T2	219464	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55999981	55999981	+	Silent	SNP	A	A	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR5T2	NM_001004746	exon1	c.T681G	p.S227S	AGAATAAGAAATA	.	658.0	95.0	655.0	1.0	.	70
OR7D4	125958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9324917	9324917	+	Silent	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OR7D4	NM_001005191	exon1	c.G597A	p.L199L	CACATACAAGACA	.	186.0	33.0	146.0	0.0	.	71
OTOP1	133060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4199717	4199717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OTOP1	NM_177998	exon5	c.T844C	p.S282P	TTGTGGAGGCCAG	.	285.0	52.0	339.0	2.0	.	92
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	29617463	29617463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	OVCH1	NM_183378	exon18	c.C2102A	p.T701N	CATCCGGTCACAG	.	142.0	20.0	148.0	0.0	.	210
PCDH11X	27328	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	91090988	91090988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDH11X	NM_001168363	exon1	c.C485T	p.A162V	TCCCAGCGGCTGT	.	244.0	101.0	178.0	1.0	.	193
PCDHA11	56138	broad.mit.edu;bcgsc.ca	37	5	140250040	140250040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDHA11	NM_018902	exon1	c.C1352A	p.A451E	ACAATGCGCCTGC	.	336.0	35.0	311.0	1.0	.	67
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140250371	140250371	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCDHA11	NM_018902	exon1	c.G1683A	p.A561A	CAACGCGCCGGCA	.	104.0	16.0	105.0	0.0	.	67
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82435139	82435139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PCLO	NM_033026	exon21	c.C14798T	p.P4933L	TTGGGAGGCTTTG	.	187.0	17.0	216.0	0.0	.	29
PFKP	5214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	3146084	3146084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PFKP	NM_002627	exon5	c.G568A	p.A190T	GACTCCGCCCTGC	.	72.0	17.0	60.0	0.0	.	253
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27251239	27251239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PHF12	NM_020889	exon4	c.G403T	p.D135Y	CAGTGTCACTGCT	.	212.0	48.0	172.0	0.0	.	91
PITPNM2	57605	ucsc.edu;bcgsc.ca	37	12	123472131	123472131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PITPNM2	NM_020845	exon21	c.G3190T	p.G1064W	CACGCCCACTGTT	.	76.0	9.0	72.0	0.0	.	228
PLA2G3	50487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31534717	31534717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLA2G3	NM_015715	exon2	c.C583A	p.Q195K	TGTACTGCAAGGG	.	544.0	95.0	593.0	1.0	.	226
PLCD3	113026	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43195840	43195840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLCD3	.	.	.	.	CAGTGTCATCAGC	.	166.0	65.0	88.0	1.0	.	703
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81927388	81927388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PLCG2	NM_002661	exon12	c.G1061T	p.R354L	GCTGTCGCTGCAT	.	74.0	13.0	90.0	0.0	.	892
PPARGC1B	133522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149213132	149213132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPARGC1B	NM_133263	exon5	c.C1496T	p.P499L	TGGTCCCCTCGGA	.	102.0	21.0	89.0	0.0	.	186
PPBP	5473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74853684	74853684	+	Missense_Mutation	SNP	G	G	T	rs201755460	alternate_allele	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPBP	NM_002704	exon1	c.C137A	p.A46E	CCTTTCGCCAAGT	.	229.0	51.0	291.0	0.0	.	93
PPP2R2B	5521	broad.mit.edu;bcgsc.ca	37	5	146435232	146435232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PPP2R2B	NM_181674	exon1	c.A70G	p.R24G	ACCTTCTGTGTGG	.	158.0	15.0	141.0	0.0	.	659
PRKCQ	5588	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6470193	6470193	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PRKCQ	NM_006257	exon18	c.C2097A	p.P699P	CATCCCGGGGTTC	.	205.0	39.0	187.0	1.0	.	1380
PVRL2	5819	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	45391367	45391367	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	PVRL2	NM_001042724	exon9	c.G1348T	p.E450X	CTCCAGGAAATGC	.	249.0	53.0	193.0	1.0	.	90
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37154091	37154091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RALGAPB	NM_020336	exon12	c.G1832C	p.R611P	AATTGCGAAGATC	.	607.0	105.0	711.0	0.0	.	92
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	49030478	49030479	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RB1	NM_000321	exon19	c.1953_1954insA	p.Y651fs	GTTTTATAAAAAA	.	103.0	19.0	126.0	0.0	.	3784
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	182458241	182458241	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RGSL1	NM_001137669	exon8	c.G1621T	p.E541X	ATGAAGGAAATGG	.	270.0	40.0	241.0	0.0	.	226
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	46318184	46318184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RSPH6A	NM_030785	exon1	c.G251T	p.G84V	TCCATGCCACCCA	.	112.0	11.0	77.0	0.0	.	91
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38974064	38974064	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	RYR1	NM_001042723	exon33	c.G4842A	p.V1614V	GCAGGTGGAGACG	.	76.0	13.0	91.0	0.0	.	100
S100A7A	338324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153390678	153390678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	S100A7A	NM_176823	exon2	c.C120A	p.F40L	GAACTTCCCCAAT	.	446.0	163.0	312.0	1.0	.	91
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23904756	23904756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SACS	NM_014363	exon10	c.G13259T	p.C4420F	GGGGGGCATTTTT	.	151.0	35.0	129.0	0.0	.	298
SERPINB4	6318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61308143	61308143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SERPINB4	NM_002974	exon5	c.A434G	p.K145R	ATCTTCTTTCGAC	.	463.0	77.0	512.0	0.0	.	228
SLC18A2	6571	ucsc.edu;bcgsc.ca	37	10	119015145	119015145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC18A2	NM_003054	exon9	c.A872G	p.D291G	TGAAGGACCCGTA	.	40.0	4.0	49.0	0.0	.	90
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92949118	92949118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC24A4	NM_153646	exon13	c.G1350T	p.E450D	CTGGGAGAAGTTC	.	135.0	20.0	146.0	0.0	.	93
SLC2A14	144195	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	7981450	7981450	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC2A14	NM_153449	exon7	c.G595T	p.E199X	TGAGTTCCAGACC	.	210.0	29.0	216.0	1.0	.	91
SLC37A4	2542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118896705	118896705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC37A4	NM_001467	exon8	c.G956T	p.R319L	GTTACCCGGAAGA	.	134.0	14.0	140.0	0.0	.	67
SLC6A11	6538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10967702	10967702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLC6A11	NM_014229	exon9	c.C1133A	p.A378D	GCCTGGCCTTTAT	.	242.0	47.0	205.0	1.0	.	132
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	86370026	86370026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SLITRK6	NM_032229	exon2	c.C618A	p.H206Q	GCCAATGTGTTCG	.	131.0	24.0	120.0	0.0	.	137
SMG9	56006	hgsc.bcm.edu;bcgsc.ca	37	19	44238560	44238560	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SMG9	NM_019108	exon10	c.C1083A	p.T361T	GTACTCGGTGCCT	.	101.0	5.0	76.0	0.0	.	91
SORCS3	22986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106959776	106959776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SORCS3	NM_014978	exon15	c.C2029T	p.L677F	TTCAGCCTCCGCT	.	150.0	30.0	151.0	1.0	.	99
SPIN4	139886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	62570624	62570624	+	Silent	SNP	G	G	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SPIN4	NM_001012968	exon1	c.C75T	p.H25H	CTTCCTGTGGGTG	.	84.0	44.0	89.0	0.0	.	109
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52546358	52546358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STAB1	NM_015136	exon27	c.C2885T	p.A962V	CCCAGGCCACCTG	.	68.0	9.0	75.0	0.0	.	139
STK3	6788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99560362	99560362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	STK3	NM_001256312	exon11	c.A1060T	p.M354L	TCACCATGGTGTG	.	152.0	34.0	188.0	0.0	.	978
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62551067	62551067	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	SYT16	NM_031914	exon5	c.A1588T	p.S530C	AAAGGCAGCCATT	.	113.0	22.0	80.0	0.0	.	23
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12939183	12939183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TLR8	NM_138636	exon2	c.T2024C	p.M675T	ATAATATGTTAAA	.	134.0	47.0	87.0	0.0	.	629
TMPRSS3	64699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43802158	43802158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TMPRSS3	NM_032405	exon9	c.T968C	p.L323P	CCACATAGAGACC	.	150.0	14.0	160.0	1.0	.	155
TNK2	10188	ucsc.edu;bcgsc.ca	37	3	195605439	195605439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TNK2	NM_001010938	exon8	c.G1228T	p.G410W	GCTCCCCCTCCTT	.	43.0	4.0	32.0	0.0	.	957
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	172.0	34.0	202.0	2.0	C|1.000;|0.000	70225
TRAPPC3	27095	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36614938	36614938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRAPPC3	NM_001270894	exon1	c.G42A	p.M14I	AGTTACCATTTTC	.	172.0	24.0	117.0	1.0	.	90
TRIM49	57093	hgsc.bcm.edu;broad.mit.edu	37	11	89537604	89537604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRIM49	NM_020358	exon3	c.34delG	p.E12fs	TGAGTTCCCCCTG	.	394.0	36.0	438.0	0.0	.	84
TRO	7216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	54955568	54955598	+	Frame_Shift_Del	DEL	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	-	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	GTTTCAGCAGTGAAGCCAGCATTAGCTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TRO	NM_001039705	exon12	c.2411_2441del	p.804_814del	GCACTAGTTTCAG	.	145.0	0.0	136.0	0.0	.	131
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2098719	2098719	+	Nonsense_Mutation	SNP	C	C	T	rs137854105		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TSC2	NM_001114382	exon2	c.C103T	p.Q35X	GGTAAACAGACGG	.	264.0	59.0	227.0	0.0	.	1908
TTBK1	84630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43230655	43230655	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TTBK1	NM_032538	exon13	c.T1553A	p.V518E	CCTCTGTGGAGCA	.	156.0	26.0	117.0	1.0	.	353
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179484372	179484372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	TTN	NM_001267550	exon250	c.G46672T	p.A15558S	CTCTGGCTTCTTT	.	314.0	48.0	312.0	1.0	.	636
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49151699	49151699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	USP19	NM_001199161	exon16	c.C2311G	p.P771A	GAAACGGGTCAAA	.	200.0	39.0	132.0	0.0	.	663
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53761860	53761860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	VN1R2	NM_173856	exon1	c.T232G	p.S78A	CTTGTCTCTGCAC	.	135.0	26.0	90.0	0.0	.	90
ZBED5	58486	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	10875696	10875696	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	.	NM_021211	exon3	c.G797C	p.R266T	TTCAGTCTACAAA	.	215.0	12.0	216.0	0.0	.	.
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62340061	62340061	+	Silent	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZGPAT	NM_032527	exon2	c.G129T	p.L43L	GGACCTGAAGGAG	.	59.0	11.0	63.0	0.0	.	90
ZNF154	7710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58216279	58216279	+	Silent	SNP	A	A	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF154	NM_001085384	exon2	c.T102A	p.A34A	TCTTTGAGCCTCA	.	266.0	30.0	314.0	0.0	.	90
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123598880	123598880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF202	NM_003455	exon7	c.T793C	p.Y265H	AGACATATTCTCC	.	238.0	13.0	227.0	0.0	.	91
ZNF202	7753	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	123600353	123600353	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF202	NM_003455	exon5	c.G583T	p.E195X	CCTCTTCCTGGTG	.	123.0	10.0	140.0	0.0	.	91
ZNF324B	388569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58967236	58967236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF324B	NM_207395	exon4	c.G925T	p.G309C	CACAGCGGCGAGA	.	158.0	23.0	185.0	0.0	.	91
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	72775861	72775861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF407	NM_017757	exon8	c.C6184T	p.P2062S	GTCCATCCCTCAG	.	94.0	9.0	74.0	0.0	.	92
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	30935048	30935048	+	Silent	SNP	C	C	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZNF536	NM_014717	exon2	c.C579T	p.R193R	TGTGCGCGAGGAG	.	50.0	12.0	32.0	0.0	.	144
ZP3	7784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76062261	76062261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A114-01A-11D-A12Z-10	TCGA-DD-A114-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90fc6786-22dd-4122-9622-6cd05c0f9f96	9d9f0180-5872-4882-ab29-986b29f4af7d	.	ZP3	NM_001110354	exon3	c.G449T	p.S150I	TGAGCAGCCAGGC	.	103.0	19.0	95.0	0.0	.	90
