Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AARS2	57505	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44272531	44272531	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AARS2	NM_020745	exon12	c.G1603C	p.V535L	GCAACACCTGGGC	.	229.0	33.0	72.0	1.0	.	91
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48559835	48559835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ABCA13	NM_152701	exon53	c.A13996G	p.T4666A	CAGGGCACAGTAC	.	275.0	92.0	98.0	0.0	.	521
ADH1C	126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100266044	100266044	+	RNA	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	GACCCATAACCAG	.	159.0	113.0	99.0	0.0	.	.
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105418058	105418058	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AHNAK2	NM_138420	exon7	c.G3730C	p.G1244R	GGTGCCCTTTGAA	.	63.0	54.0	41.0	1.0	.	47
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15512065	15512065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AKAP8L	NM_014371	exon5	c.G712A	p.G238S	CCCCACCTCGCAT	.	22.0	17.0	19.0	0.0	.	1
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114278315	114278315	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANK2	NM_001148	exon38	c.A8541T	p.S2847S	ATCTTCATCCTCT	.	212.0	76.0	67.0	0.0	.	583
ANKRD20A1	84210	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	67968357	67968357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANKRD20A1	NM_032250	exon15	c.A1916T	p.D639V	CACGAGATGTTTC	.	1051.0	289.0	165.0	0.0	.	68
APBA1	320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	72064664	72064664	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	APBA1	NM_001163	exon10	c.G2017T	p.E673X	CAGACTCCACAAT	.	98.0	38.0	48.0	0.0	.	91
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57283493	57283493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	APPL1	NM_012096	exon11	c.G969T	p.M323I	GGCCATGGACATA	.	162.0	66.0	77.0	0.0	.	153
ARHGEF2	9181	broad.mit.edu;mdanderson.org	37	1	155931469	155931469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF2	NM_001162383	exon11	c.C1451A	p.A484E	CCCGTCGCTGTCT	.	37.0	6.0	11.0	0.0	.	228
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135767930	135767930	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF6	NM_004840	exon12	c.C1298G	p.S433C	GGTTCGGACAGTA	.	320.0	118.0	103.0	0.0	.	227
ARHGEF9	23229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	62926264	62926264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF9	NM_015185	exon3	c.C255A	p.D85E	ATTGGGGTCCAGG	.	102.0	45.0	49.0	0.0	.	233
ATXN3L	92552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13337139	13337139	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATXN3L	NM_001135995	exon1	c.C915A	p.G305G	ACTGTGGCCCGGC	.	457.0	213.0	141.0	0.0	.	542
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	24989464	24989464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BCAT1	NM_001178093	exon8	c.T920C	p.L307P	AGGTCCAGAATGC	.	171.0	67.0	80.0	0.0	.	522
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	136589325	136589325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BCLAF1	NM_014739	exon10	c.G2372T	p.G791V	CTAACTCCTGCAA	.	333.0	37.0	106.0	0.0	.	228
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107391941	107391941	+	Missense_Mutation	SNP	C	C	T	rs142662918	byfrequency;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BEND3	NM_001080450	exon5	c.G454A	p.V152M	CGTACACGTTTAG	.	144.0	59.0	54.0	0.0	C|1.000;G|0.000	71
BPIFA1	51297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	31825880	31825880	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_016583	exon3	c.G180T	p.L60L	CCTGCTGTCTGGG	.	95.0	38.0	37.0	0.0	.	.
C4orf26	152816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76489342	76489342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	C4orf26	NM_001206981	exon3	c.C130T	p.R44C	TATTTACGCCTCC	.	71.0	36.0	46.0	0.0	.	90
CABLES2	81928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60968622	60968622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CABLES2	NM_031215	exon6	c.C754A	p.L252M	TGACCAGGGCGTT	.	120.0	57.0	52.0	0.0	.	91
CASK	8573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41428985	41428985	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CASK	NM_001126054	exon16	c.A1518G	p.K506K	ATTCATTTTTAAA	.	411.0	162.0	137.0	0.0	.	616
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31691634	31691634	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001257968	exon13	c.G2871T	p.R957R	AGACCGGGCTCAG	.	444.0	210.0	113.0	0.0	.	.
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	19612615	19612615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH18	NM_001167667	exon6	c.G739T	p.G247W	AAAGCCCTCCAAC	.	375.0	192.0	91.0	0.0	.	159
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26906920	26906920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH9	NM_016279	exon4	c.C551T	p.T184I	GCATCTGTTGCAG	.	228.0	121.0	67.0	0.0	.	99
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176003023	176003023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDHR2	NM_017675	exon12	c.T1031C	p.M344T	GAGTGATGGACGT	.	110.0	34.0	42.0	0.0	.	70
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104060948	104060948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CENPE	NM_001813	exon38	c.A6202G	p.R2068G	TCACTCTAGCTAT	.	227.0	153.0	114.0	0.0	.	277
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu	37	14	105351860	105351860	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001112726	exon10	c.1925delC	p.A642fs	GTGCGGCCCCCCA	.	32.0	16.0	8.0	0.0	.	.
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88486497	88486497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CEP290	NM_025114	exon29	c.T3422C	p.L1141S	TTCTCTAATTCTA	.	366.0	150.0	119.0	0.0	.	96
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	146714372	146714372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CHD1L	NM_004284	exon1	c.A19G	p.T7A	GGCGCTACTAGCC	.	37.0	14.0	9.0	0.0	.	231
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190030689	190030689	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CLDN1	NM_021101	exon2	c.C360A	p.V120V	CCCAATGACAGCC	.	155.0	53.0	67.0	0.0	.	91
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79027939	79027953	+	In_Frame_Del	DEL	ATATTTAGAGCCTGA	ATATTTAGAGCCTGA	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	ATATTTAGAGCCTGA	ATATTTAGAGCCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CMYA5	NM_153610	exon2	c.3351_3365del	p.1117_1122del	TCAAGCATATTTA	.	191.0	28.0	90.0	0.0	.	77
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107807134	107807134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	COL4A5	NM_000495	exon4	c.C254A	p.P85Q	CAGGGCCACCAGG	.	498.0	220.0	148.0	0.0	.	133
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47746441	47746441	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CORIN	NM_006587	exon5	c.T777G	p.P259P	CTGCTGAGGTGAG	.	127.0	41.0	61.0	0.0	.	91
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43273593	43273593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CRIP3	NM_206922	exon8	c.G574C	p.G192R	AGCAGCCCACATC	.	178.0	56.0	74.0	0.0	.	91
CRYM-AS1	400508	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21328280	21328280	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	ATAAGAACGGACC	.	182.0	59.0	76.0	0.0	.	.
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2976080	2976080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSMD1	NM_033225	exon42	c.C6271A	p.P2091T	ATGGGGGTGGATC	.	140.0	55.0	57.0	0.0	.	86
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37678916	37678916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSNK1A1L	NM_145203	exon1	c.T478A	p.L160M	TGGCCAAACCAAA	.	743.0	336.0	152.0	0.0	.	396
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	67829142	67829142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTNNA3	NM_001127384	exon15	c.G2083T	p.D695Y	TATCATCCCATAT	.	354.0	140.0	121.0	0.0	.	234
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117375351	117375351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTTNBP2	NM_033427	exon15	c.C3660A	p.S1220R	TTCAGTGCTGCGA	.	151.0	67.0	72.0	0.0	.	94
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43153266	43153266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CUL9	NM_015089	exon3	c.G668A	p.R223H	ACAGTCGCTATAC	.	121.0	52.0	37.0	0.0	.	529
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176887553	176887553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DBN1	NM_080881	exon11	c.G841A	p.A281T	CTGCTGCCTCCTG	.	144.0	69.0	53.0	0.0	.	587
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27998516	27998516	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DCAF8L1	NM_001017930	exon1	c.C936T	p.F312F	AATGGTGAACACA	.	183.0	59.0	64.0	0.0	.	112
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162731029	162731029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DDR2	NM_001014796	exon10	c.G884T	p.G295V	CTAAAGGTGTGAA	.	307.0	71.0	83.0	0.0	.	1464
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31200854	31200854	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DMD	NM_004016	exon8	c.770+1G>T	.	CTAATACCTGAAT	.	151.0	57.0	75.0	0.0	.	265
DSTYK	25778	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	205180511	205180511	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DSTYK	NM_199462	exon1	c.C153T	p.F51F	GCGGAAGAACTTC	.	30.0	12.0	8.0	0.0	.	333
DYNC1H1	1778	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102467528	102467528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DYNC1H1	NM_001376	exon20	c.G4232A	p.R1411H	AAGACCGCCATTG	.	261.0	90.0	109.0	2.0	.	98
EOMES	8320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27758974	27758974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EOMES	NM_005442	exon6	c.A1648T	p.I550F	ATTTAATGCCATA	.	187.0	67.0	66.0	0.0	.	156
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	60200656	60200656	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ERCC8	NM_000082	exon5	c.T444C	p.H148H	AGACATATGATGA	.	322.0	130.0	108.0	0.0	.	227
FAM180A	389558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135418945	135418945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM180A	NM_205855	exon3	c.C300A	p.S100R	TGGGATGCTCTTG	.	93.0	41.0	41.0	0.0	.	92
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50724480	50724480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM186A	NM_001145475	exon7	c.A6910T	p.I2304L	CTGCTATTGGGTA	.	285.0	110.0	92.0	0.0	.	68
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48780612	48780612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FBN1	NM_000138	exon26	c.G3161A	p.R1054K	TCACACCTGCACT	.	123.0	52.0	40.0	0.0	.	92
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70316754	70316754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FOXO4	NM_005938	exon1	c.C376G	p.Q126E	CTTGCCCAGATCT	.	283.0	115.0	91.0	0.0	.	986
FRG1B	284802	broad.mit.edu;ucsc.edu	37	20	29625935	29625935	+	RNA	SNP	A	A	G	rs62198354	byfrequency	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRG1B	.	.	.	.	TTGGGCATTCAGA	.	343.0	157.0	81.0	1.0	A|0.417;G|0.583	22
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12712563	12712563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRMPD4	NM_014728	exon9	c.T923C	p.L308P	AGTATCTCTATGT	.	328.0	132.0	103.0	0.0	.	263
G6PC3	92579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42152763	42152763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	G6PC3	NM_138387	exon5	c.G621A	p.M207I	CCTCATGCTAGGC	.	286.0	99.0	93.0	0.0	.	91
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46967062	46967062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GABRA4	NM_000809	exon8	c.G1059T	p.R353S	TGTCTTCCTTTTG	.	620.0	230.0	165.0	0.0	.	156
GABRR2	2570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90009577	90009577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GABRR2	NM_002043	exon2	c.T121C	p.Y41H	TCTTATATAAGTG	.	190.0	79.0	74.0	0.0	.	68
GANAB	23193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62407128	62407128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GANAB	NM_198334	exon2	c.T114C	p.F38F	GGTCTTAAAGTTG	.	194.0	86.0	90.0	0.0	.	94
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34876612	34876612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GART	NM_001136005	exon22	c.A2852T	p.D951V	CCAGCATCCACAT	.	99.0	35.0	46.0	0.0	.	91
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135487872	135487872	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR112	NM_153834	exon23	c.T8676C	p.S2892S	TGATTCTATCTTT	.	487.0	173.0	143.0	0.0	.	183
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36483358	36483358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR179	NM_001004334	exon11	c.G6094T	p.V2032L	TTGACACCCCTTT	.	142.0	57.0	70.0	0.0	.	93
GRIK4	2900	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	120827654	120827654	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GRIK4	NM_014619	exon14	c.T1866C	p.S622S	TGTCAGTGGCGTC	.	24.0	14.0	15.0	0.0	.	92
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13720174	13720174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GRIN2B	NM_000834	exon12	c.C2383T	p.L795F	GCCAGAGAGCTTC	.	172.0	69.0	61.0	0.0	.	231
HARS2	23438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140077173	140077173	+	Missense_Mutation	SNP	G	G	A	rs150761811		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HARS2	NM_012208	exon11	c.G1217A	p.R406Q	AGGTGCGGACTAC	.	162.0	63.0	63.0	0.0	G|1.000;A|0.000	90
HEATR2	54919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	810170	810170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HEATR2	NM_017802	exon9	c.T1846C	p.S616P	CAGCCCTCCCAAG	.	228.0	133.0	54.0	2.0	.	69
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185950141	185950141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HMCN1	NM_031935	exon17	c.T2598G	p.I866M	CTATATTTGTGAA	.	204.0	51.0	64.0	0.0	.	113
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121416711	121416714	+	Frame_Shift_Del	DEL	GGGA	GGGA	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GGGA	GGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HNF1A	NM_000545	exon1	c.140_143del	p.47_48del	ACAAGGGGGAGTC	.	96.0	33.0	42.0	0.0	.	1745
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	121432014	121432014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HNF1A	NM_000545	exon4	c.T761A	p.L254Q	AGGGGCTGGGCTC	.	71.0	21.0	34.0	0.0	.	1745
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135582923	135582923	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HTATSF1	NM_001163280	exon5	c.T516G	p.L172L	CAAACTTTACAAA	.	579.0	246.0	155.0	0.0	.	132
IDH3A	3419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78454584	78454584	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IDH3A	NM_005530	exon6	c.T486C	p.D162D	TGTTGATGGAGTC	.	106.0	64.0	26.0	0.0	.	226
IL12A	3592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	159708075	159708075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IL12A	NM_000882	exon2	c.G240T	p.R80S	GCTGAGGGCCGTC	.	142.0	40.0	45.0	0.0	.	90
ING2	3622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184431731	184431731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ING2	NM_001564	exon2	c.A469G	p.T157A	CAGCGGACCAGTG	.	211.0	79.0	75.0	0.0	.	91
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145528004	145528004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITGA10	NM_003637	exon3	c.G241C	p.A81P	GGGGGGGCCCACA	.	253.0	146.0	50.0	0.0	.	231
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106075119	106075119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITPRIP	NM_001272013	exon2	c.C691T	p.R231C	CTGAGCGGCCGGA	.	77.0	43.0	38.0	0.0	.	90
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106075611	106075611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITPRIP	NM_001272013	exon2	c.G199C	p.E67Q	GTGCCTCCTTTTC	.	80.0	25.0	30.0	0.0	.	90
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65479799	65479799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KAT5	NM_182710	exon1	c.A61G	p.R21G	GTGGGTAGAGCCC	.	104.0	37.0	56.0	0.0	.	90
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44176879	44176879	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KCTD8	NM_198353	exon2	c.C1350T	p.I450I	AATGTGGATTTTT	.	210.0	98.0	93.0	0.0	.	92
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66975117	66975117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM2A	NM_012308	exon6	c.T444A	p.F148L	CGAGTTTAGCCAC	.	125.0	50.0	42.0	0.0	.	661
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66986855	66986855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM2A	NM_012308	exon10	c.A938G	p.N313S	TATACAACATTGA	.	153.0	65.0	58.0	0.0	.	661
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6981046	6981046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM4C	NM_001146696	exon9	c.C1109T	p.P370L	CGAAGCCTACTCC	.	92.0	45.0	38.0	0.0	.	228
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155899509	155899509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA0907	NM_014949	exon3	c.A378C	p.Q126H	CTCGTCTTGAGTC	.	219.0	68.0	59.0	0.0	.	90
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86457172	86457172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIF27	NM_017576	exon17	c.G3701A	p.R1234Q	AGTTGCCGCCGAA	.	603.0	245.0	138.0	0.0	.	523
KRTAP10-6	386674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46011435	46011435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP10-6	NM_198688	exon1	c.G931T	p.V311L	TGCACACAGGGTG	.	306.0	119.0	95.0	0.0	.	90
KRTAP5-8	57830	hgsc.bcm.edu;bcgsc.ca	37	11	71249121	71249121	+	Missense_Mutation	SNP	C	C	G	rs200585722		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP5-8	NM_021046	exon1	c.C20G	p.S7C	GCTGCTCTGGAGG	.	325.0	17.0	72.0	0.0	.	44
LAMC1	3915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183106886	183106886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LAMC1	NM_002293	exon26	c.A4397G	p.K1466R	TGTTGAAGCAACT	.	524.0	149.0	129.0	1.0	.	252
LOC100132247	0	broad.mit.edu;bcgsc.ca	37	16	22545897	22545897	+	Missense_Mutation	SNP	G	G	T	rs143579045		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001135865	exon7	c.G1593T	p.K531N	TATCAAGACACCT	.	55.0	8.0	26.0	0.0	.	.
LOC100653515	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76886840	76886840	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001243540	exon3	c.C1746T	p.D582D	CCGGTCGTCGTCG	.	599.0	126.0	120.0	0.0	.	.
LPIN2	9663	ucsc.edu;bcgsc.ca	37	18	2923820	2923820	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LPIN2	NM_014646	exon16	c.A2127G	p.K709K	CCAGTCTTTGCCC	.	45.0	4.0	28.0	0.0	.	227
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	197592314	197592314	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LRCH3	NM_032773	exon16	c.T1737C	p.A579A	TAATGCTCTATTA	.	253.0	93.0	107.0	0.0	.	91
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166974345	166974345	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAEL	NM_032858	exon7	c.G681A	p.L227L	GTGTTTGAAGCAT	.	398.0	104.0	113.0	0.0	.	91
MAGEL2	54551	broad.mit.edu;mdanderson.org	37	15	23889987	23889987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_019066	exon1	c.G2903T	p.S968I	CAGGCACTCAGGG	.	17.0	6.0	10.0	0.0	.	.
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	43652777	43652777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAOB	NM_000898	exon8	c.C817A	p.H273N	TGAAGTGAATCTT	.	461.0	152.0	142.0	0.0	.	555
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182756877	182756877	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MCCC1	NM_020166	exon12	c.C1314G	p.V438V	CCACACGACCAGC	.	194.0	89.0	70.0	0.0	.	92
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	88025144	88025144	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MEF2C	NM_001193347	exon10	c.C885A	p.S295S	CGACTGGGAGTTA	.	119.0	43.0	54.0	0.0	.	704
MEIS2	4212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	37329148	37329148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MEIS2	NM_170676	exon8	c.A767T	p.D256V	CTGTTGTCTAAAC	.	236.0	114.0	83.0	0.0	.	92
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42059127	42059127	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGA	NM_001164273	exon24	c.G8847A	p.K2949K	AGGGAAGAATACT	.	80.0	26.0	49.0	0.0	.	522
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	86374008	86374008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGAT4C	NM_013244	exon7	c.G496T	p.A166S	TTCCTGCAATAAT	.	109.0	48.0	44.0	0.0	.	93
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18273818	18273818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MICAL3	NM_015241	exon31	c.G5770A	p.E1924K	GGTCTTCCAGCTC	.	52.0	21.0	21.0	0.0	.	68
MLF1	4291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	158322940	158322940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MLF1	NM_001195432	exon9	c.G849C	p.L283F	TGTTTTGGGGGAC	.	267.0	119.0	102.0	0.0	.	658
MMP16	4325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	89339405	89339405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MMP16	NM_005941	exon1	c.C31G	p.R11G	CCAACCGTCTTCC	.	113.0	32.0	65.0	0.0	.	231
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	58979138	58979139	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MPEG1	NM_001039396	exon1	c.1201_1202insC	p.E401fs	TCTGCTCCAACTT	.	127.0	36.0	55.0	0.0	.	70
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121530146	121530146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MTBP	NM_022045	exon19	c.A2302G	p.N768D	AATAGTAATCACT	.	108.0	46.0	34.0	0.0	.	228
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3240505	3240505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MXRA5	NM_015419	exon5	c.A3221T	p.E1074V	TCTCCCTCTAGCA	.	520.0	190.0	132.0	0.0	.	136
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23897841	23897841	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYH7	NM_000257	exon15	c.C1446T	p.N482N	CTTCTCGTTGGTG	.	381.0	19.0	96.0	0.0	.	94
MYO16	23026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	109540788	109540788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO16	NM_001198950	exon14	c.G1622T	p.G541V	GGGCTGGCGCCAG	.	202.0	81.0	69.0	0.0	.	142
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27493801	27493801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO18A	NM_078471	exon2	c.A158G	p.K53R	TCACGCTTGGAGG	.	225.0	81.0	79.0	0.0	.	22
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423608	26423608	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO18B	NM_032608	exon43	c.T7668C	p.D2556D	CGACGATGTTGCG	.	93.0	35.0	39.0	0.0	.	142
MYO1C	4641	ucsc.edu;bcgsc.ca	37	17	1381481	1381481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO1C	NM_001080779	exon12	c.A1301G	p.E434G	AACTGCTCAAAGC	.	32.0	4.0	35.0	0.0	.	90
NAA15	80155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140272693	140272693	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NAA15	NM_057175	exon9	c.A942G	p.L314L	GTTCCTAAGGATG	.	216.0	96.0	86.0	0.0	.	92
NAALADL2	254827	broad.mit.edu;bcgsc.ca	37	3	175293976	175293976	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NAALADL2	NM_207015	exon10	c.1800+1G>T	.	TTAGAGGTGATTG	.	169.0	7.0	57.0	0.0	.	47
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35672500	35672500	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NBEA	NM_015678	exon11	c.G1638T	p.L546L	GATGCTGGGTGGA	.	178.0	64.0	70.0	0.0	.	144
NCR2	9436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41309741	41309741	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NCR2	NM_001199509	exon4	c.G534T	p.P178P	CAGCCCGTCCTCT	.	63.0	27.0	29.0	0.0	.	91
NELFB	25920	ucsc.edu;bcgsc.ca	37	9	140157661	140157661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_015456	exon5	c.A770G	p.D257G	CCGTGGACCCGTG	.	41.0	4.0	30.0	0.0	.	.
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156640645	156640645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NES	NM_006617	exon4	c.G3335T	p.G1112V	AGATGGCCTGGGT	.	141.0	43.0	37.0	0.0	.	520
NEUROG1	4762	ucsc.edu;bcgsc.ca	37	5	134871330	134871330	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NEUROG1	NM_006161	exon1	c.C51T	p.S17S	GCCGCTGCTGCTG	.	48.0	4.0	31.0	0.0	.	90
NGEF	25791	ucsc.edu;bcgsc.ca	37	2	233745877	233745877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NGEF	NM_019850	exon14	c.A1921G	p.I641V	CCAGGATGTTGAG	.	46.0	4.0	33.0	0.0	.	313
NID2	22795	broad.mit.edu;mdanderson.org	37	14	52535526	52535526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NID2	NM_007361	exon1	c.A187T	p.N63Y	GGGGATTCGCCAG	.	33.0	10.0	17.0	0.0	.	158
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101554302	101554302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NPAS2	NM_002518	exon5	c.361delC	p.P121fs	CATTTACCGGTGA	.	222.0	97.0	72.0	0.0	.	94
OR10A5	144124	hgsc.bcm.edu;mdanderson.org	37	11	6867462	6867462	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR10A5	NM_178168	exon1	c.G549A	p.P183P	CAGCCCGCCTGTG	.	433.0	30.0	105.0	0.0	.	71
OR10R2	343406	broad.mit.edu;mdanderson.org	37	1	158450632	158450632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR10R2	NM_001004472	exon1	c.G965T	p.R322I	CTATCAGAAAAGT	.	100.0	24.0	48.0	0.0	.	161
OR1S1	219959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57983007	57983007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR1S1	NM_001004458	exon1	c.T791A	p.F264Y	TACTGTTCTACGG	.	255.0	112.0	91.0	1.0	.	113
OR2AG2	338755	broad.mit.edu;bcgsc.ca	37	11	6790153	6790153	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR2AG2	NM_001004490	exon1	c.C36T	p.F12F	CAAGATGAAGCCG	.	155.0	7.0	53.0	0.0	.	71
OR4K1	79544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20404418	20404418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4K1	NM_001004063	exon1	c.T593G	p.M198R	AAATTATGACCCT	.	284.0	74.0	132.0	0.0	.	71
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20344661	20344661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4K2	NM_001005501	exon1	c.C235A	p.P79T	GCCACCCCAAAGA	.	413.0	119.0	124.0	0.0	.	72
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125295107	125295107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OSBPL11	NM_022776	exon5	c.G592T	p.V198F	GTCCAACATTAAA	.	196.0	74.0	84.0	0.0	.	135
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80761993	80761993	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_173591	exon54	c.A6492G	p.V2164V	CCAGGTATATACT	.	207.0	74.0	90.0	0.0	.	.
PARM1	25849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75971384	75971384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PARM1	NM_015393	exon4	c.A860G	p.Y287C	CCTCCTATGGAAG	.	219.0	83.0	89.0	1.0	.	1
PARS2	25973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55223846	55223846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PARS2	NM_152268	exon2	c.G989A	p.G330D	GGTTTGCCACAGA	.	165.0	66.0	54.0	0.0	.	92
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164768965	164768965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PBX1	NM_001204963	exon4	c.G540T	p.M180I	CGTGATGAATCTC	.	211.0	68.0	56.0	0.0	.	659
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140580796	140580796	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PCDHB11	NM_018931	exon1	c.C1449T	p.N483N	CACCAACGCCCAG	.	171.0	65.0	64.0	0.0	.	96
PCNA	5111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5096123	5096123	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PCNA	NM_002592	exon6	c.A678G	p.T226T	ACTGAGTGTCACC	.	239.0	104.0	93.0	0.0	.	651
PDCD7	10081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65426109	65426109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDCD7	NM_005707	exon1	c.C11T	p.P4L	AATGGTGGCAGGG	.	71.0	29.0	26.0	0.0	.	227
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144852472	144852472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDE4DIP	NM_014644	exon44	c.A7027G	p.T2343A	CTGGAGTACATGG	.	180.0	36.0	63.0	0.0	.	663
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103870889	103870889	+	Silent	SNP	G	G	A	rs200239592	alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDGFD	NM_025208	exon2	c.C219T	p.Y73Y	CCTGGGGTAGCTG	.	423.0	163.0	113.0	0.0	G|0.999;C|0.000	723
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70190496	70190496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDPR	NM_017990	exon19	c.G2354T	p.W785L	CTTGGTGGGGAGA	.	177.0	24.0	65.0	0.0	.	135
PDSS2	57107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	107475922	107475922	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDSS2	NM_020381	exon8	c.C1101G	p.Y367X	TCCATGGTAACGA	.	122.0	53.0	51.0	0.0	.	92
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79688429	79688429	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PHIP	NM_017934	exon25	c.2770-1G>T	.	CAATCTCTGACAA	.	151.0	61.0	61.0	0.0	.	579
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204408086	204408086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PIK3C2B	NM_002646	exon24	c.C3493G	p.P1165A	CCCCAGGGTTGTG	.	111.0	22.0	43.0	0.0	.	1310
PIPSL	266971	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95719360	95719360	+	RNA	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	GTTTCCCACAAAG	.	273.0	119.0	101.0	0.0	.	.
PLAA	9373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	26923264	26923264	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLAA	NM_001031689	exon7	c.G951T	p.L317L	GTGAGACAGTTCT	.	343.0	122.0	111.0	0.0	.	514
PLCXD3	345557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41381972	41381972	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLCXD3	NM_001005473	exon2	c.G768A	p.V256V	TTTGACCACAGTG	.	291.0	162.0	72.0	0.0	.	229
PLOD2	5352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	145828234	145828234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLOD2	NM_182943	exon4	c.T340C	p.F114L	CATCAAAGCTGTT	.	109.0	47.0	61.0	0.0	.	92
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131883315	131883315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLXNA4	NM_020911	exon13	c.C2667A	p.D889E	GGCGATGTCGCGA	.	41.0	9.0	23.0	0.0	.	91
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	77751296	77751296	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POMT2	NM_013382	exon14	c.A1573T	p.K525X	CACACTTGGGATT	.	126.0	50.0	52.0	0.0	.	91
PPP1R32	220004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	61249803	61249803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001170753	exon3	c.C130T	p.R44C	AAGCCCCGTGTGG	.	71.0	22.0	31.0	0.0	.	.
PREB	10113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27355507	27355507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PREB	NM_013388	exon5	c.C716T	p.T239I	GAAAAGGTGGGTC	.	191.0	61.0	62.0	0.0	.	91
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47269916	47269916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PREX1	NM_020820	exon20	c.C2329T	p.R777W	CGCGCCGACTCCG	.	55.0	27.0	22.0	0.0	.	231
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48839799	48839799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PRKDC	.	.	.	.	GGAGAATGTCTTT	.	139.0	59.0	58.0	0.0	.	1515
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70970186	70970186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PTPRB	NM_001109754	exon11	c.C2818A	p.H940N	AGGAGTGATTTTC	.	234.0	81.0	88.0	0.0	.	226
PXDNL	137902	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	52321693	52321693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PXDNL	NM_144651	exon17	c.C2491T	p.P831S	TGCACGGCCGCCC	.	67.0	35.0	25.0	1.0	.	70
RALGDS	5900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135984101	135984101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RALGDS	NM_006266	exon5	c.C737T	p.A246V	AGCTGGGCCAGGA	.	50.0	32.0	33.0	0.0	.	722
RBKS	64080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28065967	28065967	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RBKS	NM_022128	exon5	c.T481C	p.L161L	CTTCCAAAGAAGT	.	151.0	44.0	56.0	0.0	.	92
RGSL1	353299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182443063	182443063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RGSL1	NM_001137669	exon6	c.G817T	p.D273Y	AAGCCAGATGCTA	.	200.0	67.0	66.0	0.0	.	226
RPS6KA1	6195	ucsc.edu;bcgsc.ca	37	1	26898357	26898357	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPS6KA1	NM_001006665	exon18	c.C1797T	p.G599G	CCAGGGCTACGAT	.	44.0	4.0	27.0	0.0	.	510
RPS6KA2	6196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166944752	166944752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPS6KA2	NM_001006932	exon4	c.C290T	p.A97V	TTCATGGCGTAGA	.	108.0	34.0	47.0	0.0	.	1405
RTN1	6252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	60097163	60097163	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RTN1	NM_206852	exon2	c.61+1G>T	.	AGAATACCCTGAC	.	78.0	23.0	31.0	0.0	.	516
RTN1	6252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	60074128	60074128	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RTN1	NM_021136	exon4	c.C1848A	p.T616T	GAACTGGGTCAGG	.	78.0	33.0	18.0	0.0	.	516
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237580423	237580423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RYR2	NM_001035	exon11	c.C848T	p.A283V	GAGTTGCGTAAGT	.	177.0	68.0	57.0	0.0	.	158
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237972285	237972285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RYR2	NM_001035	exon100	c.A14383G	p.K4795E	TACAATAAAAGTG	.	308.0	133.0	101.0	0.0	.	158
SCML1	6322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17768332	17768332	+	Missense_Mutation	SNP	G	G	T	rs199560760	alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SCML1	NM_001037540	exon6	c.G622T	p.G208W	TCTTCAGGGCTCT	.	173.0	58.0	77.0	0.0	G|1.000;A|0.000	290
SEC22B	9554	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145109670	145109670	+	RNA	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	.	CCTATTCCTTTAT	.	887.0	65.0	146.0	0.0	.	.
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26706636	26706636	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SEZ6L	NM_021115	exon7	c.G1515A	p.R505R	TGCCAGGATGACG	.	102.0	36.0	44.0	0.0	.	95
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	13965672	13965672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SGCZ	NM_139167	exon6	c.G620A	p.R207K	CCTTACCTGAGAT	.	178.0	64.0	76.0	0.0	.	93
SIL1	64374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138287486	138287486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIL1	NM_001037633	exon9	c.A855G	p.A285A	CTTCTTTGCAGTG	.	64.0	22.0	17.0	0.0	.	90
SIRT4	23409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120741415	120741415	+	Silent	SNP	C	C	T	rs199859894		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIRT4	NM_012240	exon2	c.C51T	p.I17I	TTGGATCGCAAAC	.	86.0	25.0	40.0	0.0	.	226
SLC27A2	11001	broad.mit.edu;bcgsc.ca	37	15	50518239	50518239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC27A2	NM_003645	exon6	c.C1222T	p.R408C	CCTGTCCGTGATG	.	197.0	8.0	75.0	0.0	.	92
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	128368891	128368891	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC27A6	NM_001017372	exon10	c.C1776A	p.Y592X	ACTTTACTTCATG	.	422.0	160.0	123.0	0.0	.	90
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72879327	72879327	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMC5	NM_015110	exon2	c.C293G	p.A98G	GTTTAGCTGGAAA	.	331.0	155.0	92.0	0.0	.	229
SMR3A	26952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71232505	71232505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMR3A	NM_012390	exon3	c.C199A	p.L67I	CCACCCCTTTCTC	.	307.0	119.0	105.0	0.0	.	90
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	186533094	186533094	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SORBS2	NM_001270771	exon21	c.G3224A	p.W1075X	TCATACCAGTTTT	.	351.0	22.0	113.0	0.0	.	91
SPATA19	219938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133714431	133714431	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPATA19	NM_174927	exon3	c.C240A	p.G80G	GTCCTGGCCATGG	.	219.0	91.0	78.0	0.0	.	90
SPTY2D1	144108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18638422	18638422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPTY2D1	NM_194285	exon2	c.G175C	p.A59P	ACATACCTTTTCG	.	255.0	107.0	103.0	0.0	.	90
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30750324	30750324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SRCAP	NM_006662	exon34	c.C8963T	p.T2988I	CTGCTACTGTTGC	.	91.0	35.0	40.0	0.0	.	94
SRSF1	6426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56083127	56083127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SRSF1	NM_001078166	exon3	c.A587G	p.N196S	ATCCAATTCTGGT	.	117.0	39.0	58.0	0.0	.	290
SSR2	6746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155988138	155988138	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SSR2	NM_003145	exon3	c.A177G	p.L59L	ATCAGATAGTTCC	.	94.0	33.0	30.0	0.0	.	90
SUCO	51430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172557990	172557990	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_014283	exon18	c.G1749C	p.E583D	TCAAGAGGAGGAA	.	262.0	75.0	69.0	0.0	.	.
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53254291	53254291	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SUGT1	NM_001130912	exon13	c.996+1G>T	.	TCCTTTGTAAGAA	.	142.0	44.0	76.0	0.0	.	226
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123846536	123846536	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TACC2	NM_206862	exon4	c.G4521T	p.R1507R	GGAGCGGAACTTG	.	53.0	17.0	27.0	0.0	.	296
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	76055603	76055603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TBC1D4	NM_014832	exon1	c.G301A	p.A101T	CCGAGGCCCCAGC	.	80.0	39.0	26.0	0.0	.	95
TCF25	22980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89960138	89960138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCF25	NM_014972	exon7	c.C700G	p.L234V	CCAGGTCTGTCCA	.	153.0	42.0	30.0	0.0	.	90
TECTB	6975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	114046139	114046139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TECTB	NM_058222	exon4	c.A473G	p.N158S	CTCTCAACTTCTA	.	142.0	55.0	66.0	0.0	.	90
TEX35	84066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	178489807	178489807	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001170724	exon7	c.342-1G>C	.	CCCCCAGTCCCCT	.	105.0	22.0	38.0	0.0	.	.
TFEC	22797	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	115624439	115624439	+	Silent	SNP	C	C	A	rs34738022	byfrequency;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TFEC	NM_001018058	exon2	c.G57T	p.V19V	ACTTGGCACTGCA	.	393.0	158.0	127.0	0.0	C|0.983;T|0.017	153
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	89177576	89177576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TGIF2LX	NM_138960	exon2	c.G492T	p.K164N	GCCAAAGGGCCAG	.	165.0	65.0	68.0	0.0	.	92
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	11464348	11464348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	THSD7A	NM_015204	exon15	c.G3358C	p.E1120Q	CGCCCTCTCCACA	.	153.0	14.0	57.0	0.0	.	71
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578554	7578554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	TP53,NS,carcinoma,+2	TP53	NM_000546	exon5	c.T376G	p.Y126D	GGGAGTACTGTAG	.	21.0	14.0	17.0	0.0	.	70225
TRMU	55687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46751486	46751486	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRMU	NM_018006	exon9	c.1018+1G>A	.	CACTAGGTGACTG	.	53.0	39.0	27.0	0.0	.	23
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	180325533	180325533	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTC14	NM_001042601	exon10	c.1270delA	p.K424fs	TTGCAGAAACTTC	.	241.0	102.0	99.0	0.0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179475909	179475909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTN	NM_001267550	exon270	c.G50947C	p.V16983L	TTGGAACTGGGAC	.	151.0	77.0	64.0	0.0	.	636
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73836847	73836847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNC13D	NM_199242	exon8	c.C679A	p.R227S	ACCTGCGAAGCCC	.	251.0	68.0	53.0	0.0	.	92
UNKL	64718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	1420138	1420138	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNKL	NM_001193388	exon12	c.C1578T	p.S526S	TAGGGGGCTGTAG	.	33.0	13.0	11.0	0.0	.	90
UPP1	7378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48147819	48147819	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UPP1	NM_003364	exon9	c.C798T	p.A266A	AGCGGCCGTGGTG	.	58.0	27.0	20.0	0.0	.	514
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22016544	22016544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	USP48	NM_032236	exon24	c.G2932A	p.D978N	TTCCATCAATTGA	.	301.0	107.0	96.0	0.0	.	659
VGLL1	51442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	135618180	135618180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VGLL1	NM_016267	exon2	c.A1G	p.M1V	CTCACAATGGAAG	.	46.0	23.0	32.0	0.0	.	130
VRTN	55237	hgsc.bcm.edu;broad.mit.edu	37	14	74824462	74824463	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VRTN	NM_018228	exon2	c.976_977insG	p.R326fs	TTCCACCGGGGGG	.	25.0	9.0	20.0	0.0	.	155
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28112968	28112968	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	XPO6	NM_015171	exon23	c.G3087T	p.V1029V	GAGCAGCACGTTC	.	40.0	16.0	24.0	0.0	.	227
ZDHHC3	51304	broad.mit.edu;ucsc.edu	37	3	44968182	44968182	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZDHHC3	NM_016598	exon8	c.G983A	p.X328X	GTCCTTCAGACCA	.	143.0	54.0	63.0	1.0	.	90
ZFP2	80108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178358877	178358877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZFP2	NM_030613	exon5	c.G563T	p.C188F	ATCAGTGTAAAGA	.	52.0	19.0	29.0	0.0	.	93
ZNF322	79692	hgsc.bcm.edu;broad.mit.edu	37	6	26637760	26637762	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001242797	exon5	c.1020_1022del	p.340_341del	CTCATTTTCTGTT	.	2022.0	240.0	193.0	0.0	.	.
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72346946	72346946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF407	NM_001146190	exon1	c.G3971A	p.G1324D	AGGATGGCCCAGC	.	104.0	48.0	48.0	0.0	.	92
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu	37	16	88497694	88497695	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001127464	exon2	c.3732_3733del	p.1244_1245del	CAGCAGACATGAC	.	35.0	18.0	9.0	0.0	.	.
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121487810	121487810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF474	NM_207317	exon2	c.C125T	p.S42F	GCCTTTCCCCAGA	.	242.0	111.0	90.0	0.0	.	90
ZNF490	57474	ucsc.edu;bcgsc.ca	37	19	12692087	12692087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF490	NM_020714	exon5	c.C802T	p.H268Y	TTTCATGGCGCCG	.	37.0	4.0	55.0	0.0	.	90
ZNF611	81856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53209133	53209133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF611	NM_030972	exon7	c.A1175G	p.H392R	CCAGTATGAATTC	.	107.0	41.0	60.0	0.0	.	91
ZNF808	388558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53057994	53057994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001039886	exon5	c.G1825T	p.A609S	AAATCAGCTCTTG	.	77.0	30.0	39.0	0.0	.	.
ZSCAN32	54925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3433548	3433548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_017810	exon6	c.A762C	p.R254S	AGAATTTCTACAT	.	307.0	121.0	112.0	0.0	.	.
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu	37	6	116987857	116987857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZUFSP	NM_145062	exon2	c.G499T	p.E167X	TATCTTCACTGTG	.	286.0	26.0	95.0	0.0	.	69
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	116987856	116987856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZUFSP	NM_145062	exon2	c.A500T	p.E167V	ATATCTTCACTGT	.	284.0	25.0	95.0	0.0	.	69
SIRPA	140885	ucsc.edu;bcgsc.ca	37	20	1896059	1896060	+	Missense_Mutation	DNP	GT	GT	AC	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.V132T	GATGACGTGGAGT	.	308.0	44.0	104.0	0.0	.	.
COL10A1	1300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116441243	116441244	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.P679K	CACATTGGAGCCA	.	97.0	43.0	38.0	0.0	.	.
KLHDC10	23008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129760678	129760679	+	Nonsense_Mutation	DNP	GT	GT	TA	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.V189*	TGTAATGTGAAGT	.	326.0	76.0	74.0	0.0	.	.
ARHGEF5	7984	broad.mit.edu;bcgsc.ca	37	7	144070301	144070302	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.C1355F	GGGACTGCAATAA	.	1385.0	222.0	189.0	0.0	.	.
GPNMB	10457	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23296688	23296689	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GG	GG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	.	.	.	p.W182F	TTGGTTGGCTTTT	.	312.0	173.0	114.0	0.0	.	.
