Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAM33	80332	ucsc.edu;bcgsc.ca	37	20	3655233	3655233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ADAM33	NM_025220	exon6	c.T518C	p.L173P	CAGGTGAGCAGCT	.	47.0	5.0	32.0	0.0	.	291
ARHGAP18	93663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129927037	129927037	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ARHGAP18	NM_033515	exon10	c.C1350T	p.N450N	GTCCCTGTTTGCA	.	89.0	65.0	68.0	0.0	.	230
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106893	27106894	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ARID1A	NM_006015	exon20	c.6504_6505insT	p.V2168fs	GGCTGTGGTACTG	.	73.0	16.0	49.0	0.0	.	584
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27105550	27105550	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	ARID1A,NS,carcinoma,0	ARID1A	NM_006015	exon20	c.C5161T	p.R1721X	TATTTCCGACGAT	.	234.0	117.0	122.0	0.0	.	584
ASAH2	56624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52008360	52008360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ASAH2	NM_001143974	exon1	c.G11A	p.R4H	AAGGTGCGTTTGG	.	104.0	37.0	65.0	0.0	.	90
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	347071	347072	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	AXIN1	NM_003502	exon7	c.1940_1941insC	p.R647fs	GTCCTGCGGTGCC	.	66.0	49.0	36.0	0.0	.	684
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	50357576	50357576	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	BRD7	NM_013263	exon12	c.T1365G	p.Y455X	ATACGGATAATCT	.	68.0	46.0	55.0	0.0	.	90
C11orf16	56673	broad.mit.edu;bcgsc.ca	37	11	8947522	8947522	+	Missense_Mutation	SNP	C	C	T	rs148052847		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	C11orf16	NM_020643	exon5	c.G692A	p.R231K	TGCTCCCTGGTGA	.	80.0	5.0	43.0	0.0	C|1.000;T|0.000	92
C11orf74	119710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	36669639	36669642	+	Frame_Shift_Del	DEL	CCAG	CCAG	-	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	CCAG	CCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	C11orf74	NM_138787	exon5	c.432_435del	p.144_145del	TGTGGCCCAGCCT	.	75.0	14.0	35.0	0.0	.	68
C11orf74	119710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	36669648	36669649	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	C11orf74	NM_138787	exon5	c.441_442insC	p.D147fs	GCCTCCTACCTGT	.	65.0	18.0	30.0	0.0	.	68
COL12A1	1303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75893307	75893307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	COL12A1	NM_004370	exon10	c.C1350A	p.S450R	CCCAATGCTATAG	.	94.0	58.0	88.0	1.0	.	142
COL25A1	84570	ucsc.edu;bcgsc.ca	37	4	109740482	109740482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	COL25A1	NM_198721	exon35	c.T1849C	p.F617L	CACGGAATCCCTG	.	24.0	4.0	20.0	0.0	.	92
DCSTAMP	81501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105361088	105361088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	.	NM_001257317	exon2	c.C308A	p.T103K	CTGGCACAGGGAT	.	222.0	89.0	90.0	0.0	.	.
EIF4G2	1982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10821282	10821282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	EIF4G2	NM_001172705	exon19	c.G2141A	p.R714H	AACATGCGGTCCT	.	112.0	18.0	55.0	0.0	.	91
EPN3	55040	hgsc.bcm.edu;ucsc.edu	37	17	48614425	48614425	+	Missense_Mutation	SNP	C	C	T	rs146173668		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	EPN3	NM_017957	exon2	c.C508T	p.R170C	TTCAGCCGCCGCT	.	44.0	19.0	14.0	0.0	C|1.000;T|0.000	91
FAM186A	121006	ucsc.edu;bcgsc.ca	37	12	50745924	50745924	+	Missense_Mutation	SNP	T	T	C	rs34283706		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	FAM186A	NM_001145475	exon4	c.A4691G	p.E1564G	GGGATCTCCAATT	.	157.0	27.0	46.0	0.0	.	68
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	127681089	127681089	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	FBN2	NM_001999	exon24	c.T3177A	p.A1059A	TCGGTTAGCAAAG	.	93.0	26.0	45.0	0.0	.	146
GMEB2	26205	broad.mit.edu;bcgsc.ca	37	20	62221645	62221645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	GMEB2	NM_012384	exon10	c.G1390C	p.D464H	TACCGTCCTGCAC	.	99.0	6.0	41.0	0.0	.	90
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	12125147	12125148	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	HIVEP1	NM_002114	exon4	c.5119_5120insA	p.E1707fs	CTATGTGAAAATG	.	246.0	43.0	63.0	0.0	.	139
IL18RAP	8807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103068506	103068506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IL18RAP	NM_003853	exon12	c.G1665T	p.M555I	CAAAATGCGCTAC	.	152.0	61.0	67.0	0.0	.	95
INHBA	3624	bcgsc.ca;mdanderson.org	37	7	41729607	41729607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	INHBA	NM_002192	exon3	c.C922T	p.R308C	GCCGACGCCGGCG	.	65.0	38.0	32.0	1.0	.	703
IQCA1	79781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	237300683	237300683	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IQCA1	NM_001270585	exon11	c.1370delA	p.N457fs	TTTAAGTTTTTAA	.	344.0	149.0	114.0	0.0	.	23
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185320192	185320192	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IRF2	NM_002199	exon7	c.G571T	p.E191X	CAATCTCTTGATT	.	104.0	88.0	73.0	0.0	.	91
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45387555	45387555	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ITGB3	NM_000212	exon15	c.G2352C	p.T784T	TATCACGTACCGG	.	237.0	100.0	76.0	0.0	.	714
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152785040	152785040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	LCE1B	NM_178349	exon1	c.G118T	p.V40F	CCTCCAGTCTCTT	.	839.0	180.0	100.0	0.0	.	68
MAPK4	5596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	48190630	48190630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	MAPK4	NM_002747	exon2	c.C302T	p.A101V	GCGTGGCGTACAT	.	36.0	14.0	15.0	0.0	.	1404
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76917166	76917166	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	MYO7A	NM_000260	exon41	c.G5661A	p.P1887P	CCCTCCGCACCTG	.	84.0	32.0	37.0	0.0	.	138
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134029862	134029862	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NCAPD3	NM_015261	exon29	c.C3792T	p.V1264V	CTCCTGGACCAGC	.	117.0	60.0	43.0	0.0	.	229
NFIA	4774	broad.mit.edu;bcgsc.ca	37	1	61920983	61920983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NFIA	NM_005595	exon10	c.C1429T	p.P477S	CTGGTACCTGGGA	.	120.0	8.0	77.0	0.0	.	92
NOL11	25926	ucsc.edu;bcgsc.ca	37	17	65720207	65720207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NOL11	NM_015462	exon6	c.A562G	p.I188V	TCACGTATCTTAA	.	43.0	4.0	29.0	0.0	.	90
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62566040	62566040	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NXF1	NM_006362	exon11	c.C1024G	p.R342G	GTTCGCGAATGGC	.	99.0	49.0	49.0	0.0	.	228
OCSTAMP	128506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	45174216	45174216	+	Missense_Mutation	SNP	C	C	T	rs76943342		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	.	NM_080721	exon2	c.G797A	p.R266Q	GCCAACCGCTGGG	.	89.0	25.0	36.0	0.0	C|0.997;T|0.003	.
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248366773	248366773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	OR2M3	NM_001004689	exon1	c.T404C	p.L135P	CCAATCTCATGAG	.	911.0	202.0	147.0	0.0	.	70
OR4N3P	390539	bcgsc.ca;mdanderson.org	37	15	22413859	22413859	+	RNA	SNP	C	C	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	.	.	.	.	.	AGTATTCAACTGT	.	1233.0	233.0	175.0	0.0	.	.
OR6B1	135946	ucsc.edu;bcgsc.ca	37	7	143701970	143701970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	OR6B1	NM_001005281	exon1	c.A881G	p.E294G	ACCGAGAGGTCAA	.	68.0	6.0	38.0	0.0	.	91
OR8U1	219417	ucsc.edu;bcgsc.ca	37	11	56143699	56143699	+	Missense_Mutation	SNP	T	T	G	rs4990121	bycluster;byfrequency	TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	OR8U1	NM_001005204	exon1	c.T600G	p.F200L	GATCTTTGCCTGT	.	910.0	98.0	164.0	2.0	T|0.500;G|0.500	72
PACS2	23241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105858084	105858084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PACS2	NM_001100913	exon22	c.G2236A	p.G746R	GTGAGCGGAGGCC	.	80.0	28.0	19.0	0.0	.	69
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160833216	160833216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PLA2R1	NM_001195641	exon16	c.T2417C	p.I806T	AACGGAATCTTGG	.	250.0	115.0	121.0	0.0	.	93
PSMC5	5705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61908431	61908431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PSMC5	NM_002805	exon8	c.C715T	p.R239W	ATGGCACGGGAAC	.	118.0	34.0	51.0	0.0	.	178
RBM27	54439	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145641135	145641135	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	RBM27	NM_018989	exon13	c.G1956A	p.R652R	GGCCAGGAAAGCC	.	236.0	83.0	95.0	1.0	.	70
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124763622	124763622	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ROBO4	NM_019055	exon10	c.G1509T	p.L503L	TCTGTACAGACCT	.	283.0	106.0	93.0	0.0	.	92
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	20252926	20252926	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	RPS6KA3	NM_004586	exon2	c.C76T	p.Q26X	TTTGCTGTCCATT	.	243.0	204.0	108.0	0.0	.	1504
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101348750	101348750	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	RTL1	NM_001134888	exon1	c.C2376T	p.N792N	CATGACGTTCTTG	.	159.0	69.0	56.0	0.0	.	46
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164750329	164750329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	SI	NM_001041	exon24	c.C2717T	p.T906I	TCATAAGTGAAAT	.	96.0	35.0	49.0	0.0	.	104
SLC26A4	5172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	107315471	107315471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	SLC26A4	NM_000441	exon6	c.G682T	p.A228S	GCTGCTGCCTTCC	.	310.0	23.0	108.0	0.0	.	96
SPATA3	130560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231865207	231865207	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	.	NM_139073	exon2	c.A428T	p.Q143L	ACTGGCAGATGGC	.	133.0	53.0	62.0	0.0	.	.
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81744756	81744756	+	Missense_Mutation	SNP	G	G	A	rs201611443		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	STON2	NM_001256430	exon6	c.C899T	p.T300M	GAAGGCGTGCGGT	.	118.0	15.0	61.0	0.0	.	95
SZT2	23334	ucsc.edu;bcgsc.ca	37	1	43893354	43893354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	SZT2	NM_015284	exon25	c.A3581G	p.E1194G	TGAGGGAACAAAT	.	31.0	4.0	27.0	0.0	.	144
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	30012108	30012108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TJP1	NM_003257	exon20	c.C2876T	p.P959L	GGGGTGGGCTCCT	.	268.0	119.0	93.0	0.0	.	95
TNS1	7145	hgsc.bcm.edu;ucsc.edu	37	2	218696257	218696257	+	Silent	SNP	C	C	T	rs146820371		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TNS1	NM_022648	exon20	c.G2919A	p.P973P	CAGACCCGGGGGG	.	35.0	18.0	16.0	0.0	C|1.000;T|0.000	156
TOM1L1	10040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	52991114	52991114	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TOM1L1	NM_005486	exon5	c.G378C	p.W126C	GACTTGGTCACAG	.	146.0	69.0	69.0	0.0	.	91
TPD52L1	7164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	125584076	125584076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TPD52L1	NM_003287	exon7	c.C583T	p.R195W	GGCTCCCGGCGGA	.	18.0	10.0	16.0	0.0	.	90
TRPM6	140803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77339554	77339554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TRPM6	NM_017662	exon39	c.C6044A	p.S2015Y	TCTGGGGAATTTC	.	265.0	98.0	107.0	1.0	.	335
UBE2J1	51465	ucsc.edu;bcgsc.ca	37	6	90053415	90053415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	UBE2J1	NM_016021	exon2	c.C92A	p.A31E	GGCTGCGCATGGT	.	38.0	4.0	38.0	0.0	.	226
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82833574	82833574	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	VCAN	NM_004385	exon8	c.C4752T	p.P1584P	CACTCCCACTATA	.	119.0	30.0	77.0	0.0	.	238
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79867172	79867172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	VPS13A	NM_001018038	exon22	c.G2192A	p.R731Q	AAGCACGAAAACT	.	139.0	64.0	61.0	0.0	.	161
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64989700	64989700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ZBTB1	NM_014950	exon2	c.A1478G	p.N493S	AAGAGAATCCTGA	.	98.0	44.0	50.0	0.0	.	91
ZDHHC22	283576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77606003	77606003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	.	NM_174976	exon2	c.C79T	p.L27F	GGAAGAGCTGCAG	.	57.0	20.0	26.0	0.0	.	.
ZNF107	51427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	64167564	64167564	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ZNF107	NM_016220	exon7	c.T882C	p.H294H	AATTCATACTGGA	.	81.0	40.0	43.0	0.0	.	69
