Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACOX1	51	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73975154	73975154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACOX1	NM_007292	exon1	c.A1C	p.M1L	GGTTCATGGCGAC	.	36.0	8.0	61.0	0.0	.	91
ACTR1A	10121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104247919	104247919	+	Silent	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACTR1A	NM_005736	exon4	c.T303G	p.T101T	TGAGAAAGTCTGC	.	73.0	17.0	129.0	0.0	.	90
ADAMTSL3	57188	ucsc.edu;bcgsc.ca	37	15	84611387	84611387	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ADAMTSL3	NM_207517	exon18	c.T2157C	p.C719C	TACCTGTGGAGTT	.	35.0	4.0	60.0	0.0	.	1153
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	111883814	111883814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ADD3	NM_001121	exon10	c.C1183G	p.R395G	CTCATTCGAGAGA	.	72.0	22.0	75.0	0.0	.	157
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74274387	74274388	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALB	NM_000477	exon4	c.347_348insA	p.A116fs	GCTGTGCAAAACA	.	77.0	19.0	141.0	0.0	.	96
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45939709	45939709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALOX5	NM_000698	exon13	c.C1820T	p.A607V	TGTGGGCGCTGAG	.	118.0	11.0	102.0	0.0	.	228
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4224480	4224480	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ANKRD24	NM_133475	exon22	c.G3419C	p.R1140T	TGCAGAGACTCCA	.	48.0	15.0	84.0	0.0	.	68
ARG1	383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	131904974	131904974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ARG1	NM_001244438	exon8	c.A919G	p.I307V	GTTGCAATAACCT	.	78.0	44.0	85.0	0.0	.	91
ATXN7	6314	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	63898497	63898497	+	Missense_Mutation	SNP	A	A	G	rs199663915		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ATXN7	NM_000333	exon3	c.A223G	p.M75V	GCCGCAATGGCGA	.	48.0	15.0	57.0	0.0	A|0.996;G|0.004	90
BARD1	580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215646146	215646146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BARD1	NM_000465	exon4	c.G452A	p.S151N	TTCTTACTTCGAG	.	42.0	7.0	102.0	0.0	.	415
BPTF	2186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65822352	65822352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	BPTF	NM_004459	exon1	c.A512G	p.D171G	ACGACGATGACTC	.	114.0	17.0	222.0	1.0	.	94
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37226698	37226698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	C5orf42	NM_023073	exon12	c.A1999T	p.T667S	TTACAGTATTTGA	.	184.0	41.0	142.0	0.0	.	94
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179753268	179753268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC141	NM_173648	exon9	c.G1393T	p.G465C	GGTAACCCTCCAC	.	78.0	19.0	162.0	0.0	.	78
CCDC36	339834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49294178	49294178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC36	NM_001135197	exon8	c.G1248A	p.M416I	AAGTATGTTTTTG	.	81.0	17.0	145.0	0.0	.	92
CD200R1L	344807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112548190	112548190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD200R1L	NM_001008784	exon2	c.A88G	p.N30D	AATAGTTCTGTGT	.	157.0	34.0	231.0	0.0	.	91
CD2	914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117311336	117311336	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD2	NM_001767	exon5	c.C987A	p.P329P	CCTCCCCAGACCT	.	109.0	35.0	148.0	0.0	.	153
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72539019	72539019	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD300C	NM_006678	exon3	c.G508T	p.E170X	TGGGTTCGGGGCT	.	118.0	37.0	144.0	0.0	.	90
CD300C	10871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72539020	72539020	+	Silent	SNP	G	G	T	rs147705680	alternate_allele	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD300C	NM_006678	exon3	c.C507A	p.P169P	GGGTTCGGGGCTG	.	121.0	37.0	145.0	0.0	G|1.000;A|0.000	90
CDH13	1012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83816877	83816877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CDH13	NM_001220488	exon14	c.G2075T	p.S692I	TGGTAAGCCTTCT	.	49.0	14.0	92.0	1.0	.	67
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19483500	19483500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CDH18	NM_004934	exon12	c.C1792T	p.R598W	AGGTCCGCACACG	.	322.0	61.0	234.0	0.0	.	159
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61978128	61978128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CHRNA4	NM_000744	exon6	c.G1846T	p.G616C	AGAGGCCCACCGT	.	72.0	29.0	57.0	0.0	.	91
CROCC	9696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17256975	17256975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CROCC	NM_014675	exon7	c.G735T	p.Q245H	GGACCAGGCAGGC	.	123.0	25.0	150.0	0.0	.	137
CRTC3	64784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91150628	91150628	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CRTC3	NM_022769	exon6	c.T495C	p.A165A	TTCTGCTCTTCAC	.	38.0	5.0	58.0	0.0	.	393
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274911	41274911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CTNNB1	NM_001098209	exon8	c.T1161A	p.N387K	CAGGAATCTTTCA	.	100.0	22.0	162.0	0.0	.	24361
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50918256	50918256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DCC	NM_005215	exon17	c.A2687G	p.K896R	AATACAAGGTGAA	.	49.0	20.0	52.0	0.0	.	225
DHX37	57647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	125451669	125451669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DHX37	NM_032656	exon11	c.G1504A	p.E502K	CTTTACCTTGTGG	.	87.0	7.0	103.0	0.0	.	227
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13794081	13794081	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DNAH5	NM_001369	exon48	c.T7974C	p.D2658D	ATTCACATCATCA	.	225.0	118.0	243.0	0.0	.	182
DNER	92737	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230231627	230231627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DNER	NM_139072	exon12	c.C2064A	p.S688R	GAACTCGCTGTCG	.	65.0	14.0	120.0	1.0	.	524
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	21	38865436	38865436	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DYRK1A	NM_001396	exon7	c.G1069T	p.G357X	CACACTGGAGAAC	.	73.0	16.0	132.0	0.0	.	792
EFNB2	1948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	107164993	107164993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EFNB2	NM_004093	exon2	c.C290T	p.P97L	AGGAGAGGGGTAT	.	123.0	36.0	225.0	0.0	.	91
ELK4	2005	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205589534	205589534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ELK4	NM_021795	exon3	c.A640T	p.I214F	GAGAAATACTTGG	.	177.0	21.0	186.0	1.0	.	658
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71508497	71508497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ENAM	NM_031889	exon9	c.A1354G	p.K452E	CCTACAAAGAATC	.	46.0	12.0	92.0	0.0	.	93
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212543852	212543852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ERBB4	NM_001042599	exon13	c.G1547T	p.G516V	TCTGGCCCAGGTC	.	172.0	43.0	256.0	0.0	.	1461
EVPL	2125	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74011082	74011082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EVPL	NM_001988	exon17	c.T2137A	p.F713I	GGCAGAACTCCTG	.	52.0	5.0	38.0	0.0	.	93
FAM120A	23196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96318785	96318785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAM120A	NM_014612	exon13	c.G2396T	p.W799L	GTCCTTGGATGTA	.	132.0	34.0	180.0	0.0	.	90
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126367520	126367520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAT4	NM_024582	exon8	c.G7266T	p.L2422F	CGCATTGTTAGAT	.	48.0	13.0	110.0	1.0	.	108
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	39261907	39261907	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FREM2	NM_207361	exon1	c.C426A	p.G142G	CCTGGGCGCGCGC	.	42.0	17.0	12.0	0.0	.	100
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17450871	17450871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GAB4	NM_001037814	exon4	c.C899A	p.T300N	CCTCTGGTGTGGC	.	77.0	29.0	152.0	0.0	.	91
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30827899	30827899	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GADL1	NM_207359	exon14	c.1251-1G>A	.	AGGTACCTAAAAT	.	52.0	16.0	105.0	0.0	.	90
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89989829	89989829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GPR98	NM_032119	exon33	c.C7256A	p.P2419H	GGGTGCCTGACCC	.	109.0	31.0	169.0	0.0	.	103
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153149817	153149817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GRIA1	NM_001258021	exon13	c.G2142A	p.M714I	GGGGATGATTCGA	.	122.0	63.0	181.0	0.0	.	96
HIST2H2AC	8338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858529	149858529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	HIST2H2AC	NM_003517	exon1	c.C5G	p.S2C	TCATGTCTGGTCG	.	155.0	67.0	86.0	1.0	.	92
HOOK1	51361	ucsc.edu;bcgsc.ca	37	1	60287594	60287594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	HOOK1	NM_015888	exon2	c.T128C	p.M43T	TTGCCATGGCACA	.	38.0	4.0	41.0	0.0	.	154
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113720527	113720527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KIAA1407	NM_020817	exon13	c.A2078G	p.Q693R	TCCTCTTGGGCCT	.	211.0	63.0	319.0	0.0	.	92
KLK8	11202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51503826	51503826	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KLK8	NM_144505	exon3	c.A219T	p.A73A	CTCCTGTGCCCTG	.	74.0	28.0	101.0	0.0	.	604
LDLRAD4	753	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	13645383	13645383	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_181482	exon6	c.T594C	p.S198S	TGACAGTGATTTA	.	64.0	18.0	91.0	1.0	.	.
LILRA6	79168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54746124	54746124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRA6	NM_024318	exon3	c.G133A	p.V45M	TGGTCACGGGGCT	.	379.0	57.0	601.0	0.0	.	24
LILRB4	11006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55176617	55176617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRB4	NM_006847	exon6	c.C743T	p.S248L	CAGGGTCAGTCCC	.	162.0	38.0	225.0	0.0	.	93
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71489897	71489897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MAP1B	NM_005909	exon5	c.G715A	p.V239I	GTGGAAGTCCCAT	.	83.0	13.0	144.0	0.0	.	155
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36220117	36220117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MLL4	NM_014727	exon22	c.A4837G	p.I1613V	TGTGCCATCTGGT	.	132.0	37.0	153.0	1.0	.	697
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90856345	90856345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MMRN1	NM_007351	exon6	c.C1514A	p.S505Y	ATGAATCCCTCAA	.	134.0	26.0	216.0	0.0	.	94
MNS1	55329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56748716	56748716	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MNS1	NM_018365	exon3	c.G229C	p.E77Q	TTTCTTCTGCCTG	.	104.0	32.0	279.0	0.0	.	91
MS4A15	219995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60543106	60543106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MS4A15	NM_001098835	exon7	c.G641A	p.S214N	CCTTCAGCGCAGA	.	45.0	17.0	99.0	0.0	.	69
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8994178	8994178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MUC16	NM_024690	exon65	c.G41507T	p.G13836V	AGAGGGCCAACAC	.	93.0	22.0	123.0	0.0	.	566
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108220704	108220704	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MYH15	NM_014981	exon5	c.256-2A>G	.	AGACTCTGCAGAG	.	77.0	19.0	148.0	0.0	.	73
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	35871997	35872005	+	In_Frame_Del	DEL	CCAAGGACA	CCAAGGACA	-	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	CCAAGGACA	CCAAGGACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NFKBIA	NM_020529	exon4	c.608_616del	p.203_206del	CAGCACCCAAGGA	.	77.0	12.0	110.0	0.0	.	721
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	139428887	139428887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NXPH2	NM_007226	exon2	c.A400G	p.I134V	CAACAATTTTCCC	.	113.0	30.0	191.0	0.0	.	72
OGFOD3	79701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80373361	80373361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_175902	exon2	c.G217A	p.V73I	CCAGGACCTCTGC	.	77.0	25.0	74.0	0.0	.	.
OR10Q1	219960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57995759	57995759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	OR10Q1	NM_001004471	exon1	c.A589T	p.I197F	CGCGGATGTCAGC	.	114.0	42.0	172.0	0.0	.	70
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4968507	4968507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_032972	exon2	c.A2888G	p.D963G	AGCCTGACAGCCC	.	46.0	21.0	59.0	0.0	.	.
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95222151	95222151	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PDK4	NM_002612	exon4	c.C450T	p.V150V	ATTGGTGACTGGG	.	129.0	35.0	189.0	0.0	.	358
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8051980	8051980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PER1	NM_002616	exon8	c.A1030G	p.I344V	AATGGATGCGCTC	.	72.0	19.0	64.0	0.0	.	723
PGAM5	192111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133291565	133291565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PGAM5	NM_138575	exon2	c.C313T	p.H105Y	ATCAGGCATTCCC	.	112.0	25.0	185.0	0.0	.	90
PIGM	93183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160001525	160001525	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PIGM	NM_145167	exon1	c.G5C	p.G2A	GTGGAGCCCATGA	.	104.0	17.0	105.0	0.0	.	228
POMC	5443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	25384548	25384548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	POMC	NM_001035256	exon4	c.C206G	p.P69R	GTCAGAGGCTGCT	.	80.0	19.0	113.0	0.0	.	91
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186277380	186277380	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.T2529A	p.A843A	GCCTGCTCCAACT	.	261.0	23.0	277.0	0.0	.	91
PRG4	10216	hgsc.bcm.edu;bcgsc.ca	37	1	186277383	186277383	+	Silent	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.A2532C	p.P844P	TGCTCCAACTACT	.	266.0	29.0	275.0	0.0	.	91
PSRC1	84722	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109823808	109823808	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PSRC1	NM_001032291	exon5	c.G585T	p.S195S	GGGAGTCGATCGG	.	66.0	14.0	115.0	1.0	.	90
PTPRQ	374462	bcgsc.ca;mdanderson.org	37	12	80839305	80839305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_001145026	exon3	c.A198G	p.R66R	GGAAAGAGTCGGA	.	12.0	3.0	30.0	0.0	.	.
RAD1	5810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34914840	34914840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RAD1	NM_002853	exon2	c.T158C	p.V53A	TTTTCCACTGTTA	.	185.0	116.0	179.0	1.0	.	227
RASD2	23551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35947948	35947948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RASD2	NM_014310	exon3	c.G670A	p.E224K	GTCAAGGAGATGG	.	54.0	15.0	74.0	0.0	.	659
RASGRP4	115727	broad.mit.edu;bcgsc.ca	37	19	38905729	38905729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RASGRP4	NM_170604	exon9	c.A989G	p.H330R	TTGTTGTGGGAGG	.	140.0	6.0	144.0	1.0	.	660
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237802427	237802427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RYR2	NM_001035	exon46	c.G7041A	p.M2347I	AGCAATGGAAGAA	.	201.0	93.0	199.0	0.0	.	158
SAMSN1	64092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15873032	15873032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SAMSN1	NM_001256370	exon7	c.T790C	p.C264R	TTTTGCAAATAAT	.	98.0	12.0	180.0	0.0	.	94
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198267752	198267752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SF3B1	NM_012433	exon13	c.T1727C	p.V576A	ATGACCACGAGGA	.	90.0	23.0	149.0	0.0	.	140
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70595533	70595533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SF3B3	NM_012426	exon17	c.G2134A	p.V712I	CCTCAGGTATTGG	.	46.0	8.0	79.0	0.0	.	91
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	7327859	7327859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SFMBT2	NM_001029880	exon5	c.C494A	p.S165X	GTCCTCGAACCAG	.	179.0	31.0	233.0	0.0	.	141
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7327860	7327860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SFMBT2	NM_001029880	exon5	c.T493A	p.S165T	TCCTCGAACCAGT	.	179.0	31.0	233.0	0.0	.	141
SGPP2	130367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223423159	223423159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SGPP2	NM_152386	exon5	c.C742T	p.L248F	AGCCCCCTCTTCC	.	211.0	55.0	356.0	0.0	.	91
SHC1	6464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154941042	154941042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SHC1	NM_183001	exon4	c.T679G	p.F227V	CAGCAAATTTCAG	.	146.0	64.0	156.0	0.0	.	847
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu	37	8	145641255	145641255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC39A4	NM_130849	exon2	c.C413T	p.P138L	AGGCCCGGGGTCA	.	111.0	7.0	19.0	0.0	.	90
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75684996	75684996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC44A5	NM_152697	exon16	c.A1212T	p.K404N	TATGACTTTGTAT	.	51.0	20.0	87.0	0.0	.	95
SMARCAD1	56916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	95198291	95198291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SMARCAD1	NM_001128429	exon16	c.G2063T	p.R688I	TACGAAGAATGTT	.	84.0	19.0	125.0	0.0	.	229
SPESP1	246777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69238762	69238762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPESP1	NM_145658	exon2	c.G889C	p.E297Q	GACATCGAAACTG	.	51.0	12.0	127.0	0.0	.	90
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158612680	158612680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPTA1	NM_003126	exon32	c.A4529G	p.E1510G	AGCTCCTCAAGGT	.	292.0	13.0	276.0	0.0	.	142
SRBD1	55133	broad.mit.edu;bcgsc.ca	37	2	45616467	45616467	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SRBD1	NM_018079	exon21	c.C2970T	p.D990D	AATGAGGTCCAGA	.	98.0	5.0	159.0	0.0	.	90
STARD13	90627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33703451	33703451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	STARD13	NM_178006	exon5	c.C1363G	p.R455G	TGACTCGGCTGGC	.	66.0	20.0	121.0	0.0	.	94
TBC1D21	161514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74177139	74177139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TBC1D21	NM_153356	exon5	c.A385C	p.I129L	CAGAAAATCTATG	.	88.0	33.0	109.0	0.0	.	92
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	120989400	120989400	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TECTA	NM_005422	exon6	c.C1176T	p.I392I	TCTCATCCCCAAA	.	54.0	12.0	89.0	0.0	.	225
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69084238	69084238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TMF1	NM_007114	exon9	c.G2180T	p.R727L	TCTGTACGCTGCA	.	122.0	41.0	183.0	0.0	.	90
TRPC4	7223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38211433	38211433	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TRPC4	NM_003306	exon11	c.A2556G	p.L852L	ATGAAATAACCCA	.	72.0	26.0	141.0	0.0	.	159
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219619007	219619007	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TTLL4	NM_014640	exon20	c.T3495C	p.S1165S	CCTTTCTACCCAG	.	136.0	29.0	190.0	0.0	.	93
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	93835640	93835640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	UBE2N	NM_003348	exon1	c.G21T	p.R7S	GATGATCCTGCGG	.	199.0	55.0	257.0	0.0	.	659
USP47	55031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11963990	11963990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	USP47	NM_017944	exon19	c.C2218G	p.L740V	GTTTTGCTACCTG	.	67.0	14.0	113.0	0.0	.	660
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	50025347	50025347	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDFY4	NM_020945	exon32	c.C5398T	p.Q1800X	GTGCTGCAGTTCC	.	63.0	19.0	83.0	0.0	.	22
WDR24	84219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	735892	735892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDR24	NM_032259	exon5	c.C1550T	p.S517L	GTGGCCGAGGAGT	.	93.0	30.0	132.0	0.0	.	91
WDR24	84219	ucsc.edu;bcgsc.ca	37	16	737415	737415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDR24	NM_032259	exon3	c.G661A	p.G221S	ACCAGCCCCTGTG	.	29.0	4.0	38.0	0.0	.	91
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38384931	38384931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_031951	exon4	c.G1295A	p.R432Q	AGACCCCGCCCCA	.	68.0	16.0	153.0	0.0	.	.
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81412172	81412172	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZBTB10	NM_023929	exon2	c.A1416G	p.P472P	AGCTCCAGAGTCT	.	77.0	16.0	68.0	0.0	.	522
ZCCHC7	84186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37302184	37302184	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZCCHC7	NM_032226	exon3	c.611-1G>A	.	TTTGTAGGAGAAG	.	38.0	7.0	75.0	0.0	.	92
ZMYM5	9205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20411886	20411886	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZMYM5	NM_001039650	exon6	c.A948G	p.T316T	ACAAGATGTACTA	.	76.0	12.0	168.0	0.0	.	90
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97063227	97063227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF169	NM_194320	exon5	c.T1387C	p.C463R	CCTGATTGTGGGC	.	77.0	17.0	99.0	0.0	.	92
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97063234	97063234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF169	NM_194320	exon5	c.G1394C	p.R465P	GTGGGCGTGGCTT	.	82.0	16.0	114.0	0.0	.	92
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	22162149	22162150	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	.	.	.	p.S1088*	CCATTTCCTTGAA	.	70.0	17.0	108.0	0.0	.	.
