Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48506582	48506582	+	Missense_Mutation	SNP	G	G	A	rs201934902		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ABCA13	NM_152701	exon44	c.G12845A	p.R4282H	TCACCCGTGTGCT	.	60.0	17.0	55.0	0.0	G|0.999;A|0.000	521
ABCA6	23460	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67084357	67084357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ABCA6	NM_080284	exon28	c.A3649T	p.M1217L	GTTCCATGCATCT	.	54.0	12.0	58.0	0.0	.	159
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17418528	17418528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ABCC8	NM_000352	exon33	c.C4054T	p.R1352C	CGTAGCGCACGCT	.	81.0	26.0	99.0	0.0	.	91
ACACB	32	ucsc.edu;bcgsc.ca	37	12	109679059	109679059	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACACB	NM_001093	exon35	c.A4995G	p.K1665K	CTACAAAGAAGTG	.	31.0	4.0	42.0	0.0	.	98
ACCS	84680	ucsc.edu;bcgsc.ca	37	11	44089461	44089461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACCS	NM_032592	exon2	c.C284A	p.P95H	AGAACCCCAGTGT	.	40.0	5.0	37.0	0.0	.	155
ACO2	50	ucsc.edu;bcgsc.ca	37	22	41914547	41914547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACO2	NM_001098	exon8	c.G1003A	p.D335N	CATTATGACCAAC	.	42.0	4.0	54.0	0.0	.	290
ACTN1	87	ucsc.edu;bcgsc.ca	37	14	69347583	69347583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACTN1	NM_001102	exon17	c.C2077A	p.Q693K	TGAGCTGGTGGTC	.	57.0	5.0	47.0	0.0	.	514
ACVRL1	94	ucsc.edu;bcgsc.ca	37	12	52309921	52309921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ACVRL1	NM_000020	exon8	c.C1150A	p.Q384K	GACGAGCAGATCC	.	21.0	4.0	27.0	0.0	.	521
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77369704	77369704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADAMTS18	NM_199355	exon12	c.G1808T	p.R603L	CATGTCCGGGAAC	.	20.0	4.0	42.0	0.0	.	1036
ADARB2	105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	1284338	1284338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADARB2	NM_018702	exon5	c.T1217G	p.V406G	GCCACGACCTGCG	.	16.0	5.0	26.0	1.0	.	153
ADAT1	23536	ucsc.edu;bcgsc.ca	37	16	75646506	75646506	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADAT1	NM_012091	exon7	c.C678T	p.I226I	TGGTGAGATTGGG	.	43.0	4.0	64.0	0.0	.	92
ADCY10	55811	hgsc.bcm.edu;bcgsc.ca	37	1	167802265	167802267	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADCY10	NM_018417	exon25	c.3551_3553del	p.1184_1185del	CATAATGAAAGTG	.	122.0	28.0	103.0	0.0	.	493
ADSSL1	122622	ucsc.edu;bcgsc.ca	37	14	105207562	105207562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADSSL1	NM_199165	exon8	c.C904A	p.L302I	GCCGCCCTCCTCG	.	36.0	4.0	33.0	0.0	.	515
AKAP12	9590	ucsc.edu;bcgsc.ca	37	6	151672032	151672032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AKAP12	NM_005100	exon4	c.G2506A	p.A836T	ACAGGGGCCAACG	.	58.0	5.0	75.0	0.0	.	293
AKAP1	8165	ucsc.edu;bcgsc.ca	37	17	55184293	55184293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AKAP1	NM_001242902	exon3	c.T1468C	p.C490R	GTCACCTGCATGT	.	38.0	4.0	39.0	0.0	.	227
AKIRIN1	79647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39463936	39463936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AKIRIN1	NM_024595	exon2	c.C314T	p.S105L	GTGCTTCGGAAAG	.	38.0	24.0	68.0	0.0	.	90
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46419099	46419099	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AMBRA1	NM_001267782	exon20	c.A3807G	p.P1269P	GAGGGTTGGTCCC	.	39.0	4.0	39.0	0.0	.	136
AMER3	205147	ucsc.edu;bcgsc.ca	37	2	131520641	131520641	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_152698	exon2	c.C996T	p.P332P	AGGCCCCCAGGGG	.	30.0	4.0	37.0	0.0	.	.
AMT	275	ucsc.edu;bcgsc.ca	37	3	49459665	49459665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AMT	NM_001164712	exon2	c.G130A	p.A44T	CGTGGGCCAGGTG	.	27.0	5.0	40.0	0.0	.	91
ANKHD1	54882	hgsc.bcm.edu;bcgsc.ca	37	5	139903797	139903798	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ANKHD1	NM_017747	exon25	c.4464_4465insG	p.D1488fs	AGAGGATGAAGAT	.	478.0	160.0	410.0	0.0	.	185
ANKLE2	23141	ucsc.edu;bcgsc.ca	37	12	133303866	133303866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ANKLE2	NM_015114	exon13	c.C2779T	p.R927C	TCCTGCGGAGCTG	.	19.0	4.0	29.0	0.0	.	68
ARHGAP35	2909	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47422780	47422780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_004491	exon1	c.G848A	p.R283H	TGAGTCGCATTGT	.	20.0	8.0	23.0	0.0	.	.
ARHGEF10L	55160	ucsc.edu;bcgsc.ca	37	1	17907119	17907119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ARHGEF10L	NM_018125	exon2	c.C29A	p.P10H	CACAGCCTGCCAT	.	23.0	4.0	49.0	0.0	.	292
ARHGEF40	55701	ucsc.edu;bcgsc.ca	37	14	21550107	21550107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ARHGEF40	NM_018071	exon14	c.C3080T	p.A1027V	CAGAAGCAGAGGG	.	34.0	4.0	36.0	0.0	.	228
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	27101342	27101342	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	ARID1A,NS,carcinoma,0	ARID1A	NM_006015	exon18	c.G4624T	p.E1542X	AACCACGAAGGCT	.	50.0	36.0	79.0	0.0	.	584
ASB2	51676	ucsc.edu;bcgsc.ca	37	14	94405781	94405781	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ASB2	NM_001202429	exon8	c.G1290A	p.L430L	TTGCAGCAGCAGC	.	32.0	4.0	36.0	0.0	.	228
ATG2A	23130	ucsc.edu;bcgsc.ca	37	11	64664266	64664266	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ATG2A	NM_015104	exon38	c.C5226A	p.P1742P	CAGGCCGGGCAGC	.	44.0	4.0	30.0	0.0	.	69
ATP13A1	57130	ucsc.edu;bcgsc.ca	37	19	19756683	19756683	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ATP13A1	NM_020410	exon24	c.A3360G	p.K1120K	CCTTACTTTGTAA	.	44.0	4.0	30.0	0.0	.	138
ATP4A	495	ucsc.edu;bcgsc.ca	37	19	36043982	36043982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ATP4A	NM_000704	exon18	c.A2708G	p.D903G	TGGTGGTCCTCCC	.	36.0	4.0	39.0	0.0	.	91
AXIN1	8312	broad.mit.edu;bcgsc.ca	37	16	339439	339439	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AXIN1	NM_181050	exon10	c.2354+1G>A	.	CACTCACCTGTAG	.	15.0	8.0	23.0	0.0	.	684
BCMO1	53630	ucsc.edu;bcgsc.ca	37	16	81295852	81295852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BCMO1	NM_017429	exon4	c.G435T	p.R145S	CATCAGGAAAATC	.	29.0	5.0	60.0	0.0	.	90
BCOR	54880	hgsc.bcm.edu;bcgsc.ca	37	X	39922119	39922119	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BCOR	NM_001123385	exon9	c.C4053A	p.T1351T	GTTGTCGGTGTAT	.	183.0	8.0	183.0	0.0	.	229
BEST4	266675	ucsc.edu;bcgsc.ca	37	1	45253103	45253103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BEST4	NM_153274	exon2	c.C188A	p.A63D	ACCTGAGCATACA	.	35.0	4.0	63.0	0.0	.	91
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41228578	41228578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BRCA1	NM_007300	exon14	c.G4474C	p.G1492R	AAAGGCCTTCTGG	.	75.0	29.0	81.0	0.0	.	3415
BRD8	10902	ucsc.edu;bcgsc.ca	37	5	137481515	137481515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BRD8	NM_139199	exon24	c.A3331G	p.T1111A	GGAGAGTCTTCTT	.	54.0	5.0	66.0	0.0	.	91
C10orf10	11067	ucsc.edu;bcgsc.ca	37	10	45473438	45473438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C10orf10	NM_007021	exon2	c.C41T	p.T14I	CGAATTGTGGGCA	.	30.0	4.0	35.0	0.0	.	90
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75498804	75498804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C15orf39	NM_015492	exon2	c.T415C	p.C139R	CCTCTGTGCTATG	.	53.0	22.0	55.0	0.0	.	90
C15orf55	256646	ucsc.edu;bcgsc.ca	37	15	34649666	34649666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C15orf55	NM_175741	exon7	c.A3373G	p.R1125G	GGCAGAAGGAAGA	.	26.0	4.0	25.0	0.0	.	206
C17orf49	124944	ucsc.edu;bcgsc.ca	37	17	6919194	6919194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C17orf49	NM_174893	exon3	c.T218C	p.V73A	GGACAGTGTGAGG	.	27.0	4.0	29.0	0.0	.	135
CACNA1A	773	broad.mit.edu;mdanderson.org	37	19	13410090	13410090	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CACNA1A	NM_001127221	exon19	c.T2360A	p.L787X	GCCAGCAAGTTCT	.	14.0	7.0	8.0	0.0	.	67
CACNA1A	773	ucsc.edu;bcgsc.ca	37	19	13363877	13363877	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CACNA1A	NM_001127221	exon30	c.G4797T	p.R1599R	GAACACCCGCAGG	.	36.0	4.0	59.0	0.0	.	67
CAPN11	11131	ucsc.edu;bcgsc.ca	37	6	44150676	44150676	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CAPN11	NM_007058	exon20	c.1939-2A>G	.	CTCTTCAGGACAT	.	42.0	4.0	49.0	0.0	.	136
CBFA2T3	863	ucsc.edu;bcgsc.ca	37	16	88958805	88958805	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CBFA2T3	NM_005187	exon4	c.C468T	p.S156S	GGCTGTGGACGAG	.	32.0	4.0	62.0	0.0	.	722
CCDC77	84318	ucsc.edu;bcgsc.ca	37	12	550073	550073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CCDC77	NM_032358	exon12	c.C1231A	p.R411S	TTGGAGCGTCGAC	.	25.0	4.0	30.0	0.0	.	91
CCDC83	220047	ucsc.edu;bcgsc.ca	37	11	85597247	85597247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CCDC83	NM_173556	exon5	c.G348A	p.M116I	AGATATGCGCATG	.	37.0	4.0	49.0	0.0	.	91
CD163L1	283316	ucsc.edu;bcgsc.ca	37	12	7519864	7519864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CD163L1	NM_174941	exon18	c.A4247G	p.K1416R	TCTCTCTTGAGGC	.	26.0	4.0	35.0	0.0	.	100
CD27	939	ucsc.edu;bcgsc.ca	37	12	6560517	6560517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CD27	NM_001242	exon6	c.C742A	p.Q248K	CCCATCCAGGAGG	.	32.0	4.0	59.0	0.0	.	659
CDC45	8318	ucsc.edu;bcgsc.ca	37	22	19486623	19486623	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDC45	NM_001178011	exon8	c.516-1G>T	.	CTTCCAGGTGGGC	.	37.0	4.0	38.0	0.0	.	227
CDH23	64072	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73491946	73491946	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDH23	NM_022124	exon31	c.G3918A	p.E1306E	CAACGAGCTGGAC	.	39.0	15.0	32.0	0.0	.	563
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123199606	123199606	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDK5RAP2	NM_018249	exon25	c.C3922T	p.L1308L	CCAGCAGCTCAGC	.	67.0	33.0	89.0	0.0	.	229
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76551045	76551045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDKL2	NM_003948	exon2	c.T128C	p.M43T	TTAACCATTTTGT	.	133.0	54.0	104.0	0.0	.	454
CECR5	27440	ucsc.edu;bcgsc.ca	37	22	17626008	17626008	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CECR5	NM_017829	exon5	c.354-1G>T	.	CCCAGTCTGGAGC	.	26.0	5.0	22.0	0.0	.	514
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68396566	68396566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CENPC1	NM_001812	exon5	c.G298T	p.V100F	CTACAACAAACTG	.	66.0	18.0	57.0	0.0	.	205
CHST10	9486	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101014572	101014572	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CHST10	NM_004854	exon5	c.C225T	p.L75L	CTGAACGAGCTGG	.	29.0	18.0	25.0	0.0	.	91
CILP2	148113	ucsc.edu;bcgsc.ca	37	19	19653699	19653699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CILP2	NM_153221	exon6	c.G895A	p.E299K	CACCCTGAGTCCC	.	43.0	4.0	32.0	0.0	.	91
CIRH1A	84916	ucsc.edu;bcgsc.ca	37	16	69167467	69167467	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CIRH1A	NM_032830	exon2	c.A105G	p.R35R	TTCACGAACAGAT	.	37.0	4.0	57.0	0.0	.	90
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19168279	19168279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CLTCL1	NM_007098	exon31	c.A4868T	p.E1623V	TGCTCCTCTTGCT	.	55.0	26.0	58.0	0.0	.	230
CLVS2	134829	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	123319163	123319163	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CLVS2	NM_001010852	exon2	c.C241T	p.Q81X	CGGCAGCAGAACC	.	14.0	12.0	30.0	0.0	.	27
COL11A2	1302	ucsc.edu;bcgsc.ca	37	6	33146492	33146492	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL11A2	NM_080680	exon18	c.T1683C	p.D561D	GAGTCCATCAAAA	.	30.0	4.0	43.0	0.0	.	95
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75855116	75855116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL12A1	NM_004370	exon25	c.C4616T	p.T1539M	TACTCCGTGTTGG	.	24.0	17.0	34.0	0.0	.	142
COL20A1	57642	ucsc.edu;bcgsc.ca	37	20	61944481	61944481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL20A1	NM_020882	exon17	c.G2089T	p.G697W	GTCCCAGGGAACC	.	43.0	4.0	37.0	0.0	.	90
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130282231	130282231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL6A6	NM_001102608	exon2	c.G384T	p.K128N	AGACAAGAAACAG	.	75.0	36.0	86.0	0.0	.	76
CORO1B	57175	ucsc.edu;bcgsc.ca	37	11	67210047	67210047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CORO1B	NM_020441	exon2	c.A53G	p.Q18R	ACCGGCTGCCCGA	.	43.0	4.0	49.0	0.0	.	108
CRLF1	9244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	18707746	18707746	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CRLF1	NM_004750	exon5	c.A811T	p.K271X	GGTATTTGGCTTG	.	51.0	16.0	88.0	0.0	.	514
CTTN	2017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70260723	70260723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CTTN	NM_001184740	exon6	c.G367A	p.G123S	TTCGGAGGCAAGT	.	100.0	34.0	100.0	0.0	.	227
CXorf21	80231	ucsc.edu;bcgsc.ca	37	X	30578387	30578387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CXorf21	NM_025159	exon3	c.G86T	p.G29V	TTTTCCCCAGCCA	.	47.0	4.0	54.0	0.0	.	131
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15758035	15758046	+	In_Frame_Del	DEL	AAAGTGGAGCCG	AAAGTGGAGCCG	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	AAAGTGGAGCCG	AAAGTGGAGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CYP4F3	NM_001199209	exon5	c.426_437del	p.142_146del	TGGTGAAAAGTGG	.	49.0	12.0	68.0	0.0	.	93
DDHD1	80821	ucsc.edu;bcgsc.ca	37	14	53618979	53618979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DDHD1	NM_001160147	exon1	c.C838A	p.Q280K	ACTCACGGTTCCA	.	35.0	4.0	30.0	0.0	.	92
DGKE	8526	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	54912182	54912182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DGKE	NM_003647	exon2	c.C26T	p.P9L	CGGCGCCGGGCTC	.	33.0	13.0	39.0	0.0	.	289
DIP2A	23181	ucsc.edu;bcgsc.ca	37	21	47966886	47966886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DIP2A	NM_206890	exon21	c.G2453T	p.R818I	TTCGCAGACACAA	.	43.0	4.0	55.0	0.0	.	24
DLL1	28514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170592756	170592756	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DLL1	NM_005618	exon9	c.G1611A	p.E537E	CTGGCCCTCTAGC	.	22.0	11.0	36.0	0.0	.	659
DMD	1756	ucsc.edu;bcgsc.ca	37	X	31462650	31462650	+	Missense_Mutation	SNP	G	G	T	rs143925896	byfrequency;alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DMD	NM_004006	exon60	c.C9032A	p.P3011Q	TTATACGGTGAGA	.	33.0	4.0	39.0	0.0	G|1.000;A|0.000	265
DNAH10	196385	ucsc.edu;bcgsc.ca	37	12	124416000	124416000	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DNAH10	NM_207437	exon73	c.G12543T	p.L4181L	CCTGCTGGAGCTG	.	32.0	5.0	38.0	0.0	.	95
DNAH17	8632	ucsc.edu;bcgsc.ca	37	17	76528759	76528759	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DNAH17	NM_173628	exon20	c.C2919A	p.V973V	ATTGATGACCAGG	.	40.0	4.0	47.0	1.0	.	142
DSCAML1	57453	ucsc.edu;bcgsc.ca	37	11	117389233	117389233	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	DSCAML1	NM_020693	exon7	c.A1638G	p.T546T	CCGCGCTGTGCAC	.	35.0	4.0	71.0	0.0	.	159
EFHC2	80258	ucsc.edu;bcgsc.ca	37	X	44109452	44109452	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EFHC2	NM_025184	exon5	c.T846C	p.S282S	TAGCTTACTCCTC	.	35.0	4.0	59.0	0.0	.	135
ELAVL3	1995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11577475	11577475	+	Silent	SNP	G	G	A	rs201270169		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ELAVL3	NM_032281	exon2	c.C177T	p.F59F	GCTGCCGAAGAGA	.	90.0	50.0	123.0	0.0	G|0.999;A|0.001	92
EP300	2033	ucsc.edu;bcgsc.ca	37	22	41545854	41545854	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EP300	NM_001429	exon14	c.T2469C	p.P823P	GCTTCCTCAACCA	.	44.0	4.0	38.0	0.0	.	2011
ETV2	2116	ucsc.edu;bcgsc.ca	37	19	36135135	36135135	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ETV2	NM_014209	exon6	c.716-2A>G	.	TCCCGCAGGTCCC	.	36.0	4.0	26.0	0.0	.	226
EVPL	2125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74015070	74015070	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EVPL	NM_001988	exon11	c.C1209A	p.A403A	CAGAGGGGCCACA	.	108.0	21.0	69.0	1.0	.	93
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56744128	56744128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EXOC1	NM_018261	exon9	c.A1120G	p.T374A	GAACTGACTTTAC	.	71.0	24.0	60.0	0.0	.	950
FAM108B1	51104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74481719	74481719	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAM108B1	NM_016014	exon4	c.A851C	p.E284A	ACCAGTTCCTGTG	.	31.0	12.0	40.0	0.0	.	90
FAM129B	64855	ucsc.edu;bcgsc.ca	37	9	130286041	130286041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAM129B	NM_022833	exon5	c.A506G	p.H169R	TAGTAGTGACGCG	.	54.0	6.0	42.0	0.0	.	68
FAM208B	54906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5791794	5791794	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_017782	exon15	c.A6410T	p.D2137V	TAAATGATGTTTC	.	22.0	11.0	23.0	0.0	.	.
FAM220A	84792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6370386	6370386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001037163	exon2	c.G400A	p.G134R	TGGGCCCTCCTCC	.	45.0	14.0	32.0	0.0	.	.
FAM92B	339145	ucsc.edu;bcgsc.ca	37	16	85133800	85133800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAM92B	NM_198491	exon7	c.G698A	p.R233Q	AGCAGCCGAGTGT	.	34.0	4.0	54.0	0.0	.	90
FAT3	120114	ucsc.edu;bcgsc.ca	37	11	92087171	92087171	+	Silent	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAT3	NM_001008781	exon1	c.T1893A	p.G631G	TTCTGGTGTTTTA	.	43.0	4.0	41.0	0.0	.	73
FATE1	89885	ucsc.edu;bcgsc.ca	37	X	150889963	150889963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FATE1	NM_033085	exon3	c.C331A	p.H111N	CGTTTCCATTATG	.	64.0	6.0	61.0	0.0	.	131
FBXL6	26233	ucsc.edu;bcgsc.ca	37	8	145579629	145579629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FBXL6	NM_012162	exon8	c.A1471G	p.S491G	CTGACCTGACAGT	.	34.0	4.0	53.0	0.0	.	658
FBXO11	80204	ucsc.edu;bcgsc.ca	37	2	48035495	48035495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FBXO11	NM_001190274	exon22	c.A2627G	p.H876R	ACATCATGTCCCT	.	48.0	4.0	76.0	0.0	.	659
FBXW11	23291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	171296743	171296743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FBXW11	NM_012300	exon11	c.G1457A	p.R486H	AATGTGCGCAAAC	.	46.0	22.0	48.0	0.0	.	272
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167438330	167438330	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FGFR1OP	NM_007045	exon9	c.A867G	p.L289L	CCCCTTAAAAAGT	.	30.0	23.0	80.0	0.0	.	683
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	86089513	86089513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FLRT2	NM_013231	exon2	c.T1655C	p.I552T	CGGTGATATTTGT	.	72.0	25.0	88.0	0.0	.	94
FOSL2	2355	ucsc.edu;bcgsc.ca	37	2	28626982	28626982	+	Silent	SNP	G	G	T	rs200198308		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FOSL2	NM_005253	exon2	c.G111T	p.R37R	ATTCCGGGTAGAT	.	46.0	5.0	33.0	0.0	G|0.999;T|0.001	712
GCKR	2646	ucsc.edu;bcgsc.ca	37	2	27728690	27728690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GCKR	NM_001486	exon10	c.G856T	p.A286S	GGCATTGCAGCAT	.	24.0	4.0	27.0	0.0	.	92
GCKR	2646	ucsc.edu;bcgsc.ca	37	2	27741799	27741799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GCKR	NM_001486	exon17	c.C1567A	p.L523M	GCCATGCTGCAGG	.	37.0	4.0	55.0	0.0	.	92
GLG1	2734	ucsc.edu;bcgsc.ca	37	16	74516980	74516980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GLG1	NM_001145667	exon10	c.G1614T	p.M538I	TTCTACCATCTTC	.	22.0	4.0	39.0	0.0	.	136
GPAM	57678	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	113928263	113928263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPAM	NM_020918	exon11	c.G914T	p.R305L	TGCTGTCGAAGTA	.	54.0	10.0	55.0	0.0	.	92
GPCPD1	56261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5579378	5579378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPCPD1	NM_019593	exon3	c.G139A	p.G47S	TTTCACCTGTGTC	.	82.0	30.0	73.0	0.0	.	90
GPR113	165082	ucsc.edu;bcgsc.ca	37	2	26536706	26536706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPR113	NM_001145168	exon8	c.G1198A	p.D400N	TGGTGTCAGCCAT	.	43.0	4.0	41.0	0.0	.	94
GPR137	56834	ucsc.edu;bcgsc.ca	37	11	64055319	64055319	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPR137	NM_001170726	exon5	c.G708T	p.V236V	CCTGGTGAGCGAC	.	58.0	5.0	61.0	0.0	.	68
GPR162	27239	ucsc.edu;bcgsc.ca	37	12	6934781	6934781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPR162	NM_019858	exon3	c.G1000A	p.V334M	GCCGACGTGCGCA	.	46.0	4.0	45.0	0.0	.	92
GRIK1	2897	ucsc.edu;bcgsc.ca	37	21	30968883	30968883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRIK1	NM_000830	exon9	c.G1214T	p.G405V	ACTTCGCCAGCAG	.	21.0	4.0	45.0	0.0	.	137
GRIN2A	2903	ucsc.edu;bcgsc.ca	37	16	9943615	9943615	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRIN2A	NM_000833	exon6	c.C1326T	p.I442I	TCACTTGATTTTG	.	38.0	4.0	66.0	0.0	.	349
GRM8	2918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	126542650	126542650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRM8	NM_000845	exon5	c.G1102T	p.G368C	TGCAGCCAAAATT	.	66.0	26.0	76.0	1.0	.	581
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	126542649	126542649	+	Missense_Mutation	SNP	C	C	A	rs78947184	alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRM8	NM_000845	exon5	c.G1103T	p.G368V	TTGCAGCCAAAAT	.	66.0	28.0	77.0	0.0	C|0.995;T|0.005	581
GRPR	2925	ucsc.edu;bcgsc.ca	37	X	16142451	16142451	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRPR	NM_005314	exon1	c.G375T	p.G125G	TGTTGGGGTGTCT	.	47.0	4.0	51.0	1.0	.	565
GSTO2	119391	ucsc.edu;bcgsc.ca	37	10	106035008	106035008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GSTO2	NM_001191013	exon3	c.C59A	p.P20Q	CAGTCCCGGAGGG	.	37.0	4.0	40.0	0.0	.	91
HDC	3067	ucsc.edu;bcgsc.ca	37	15	50545863	50545863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HDC	NM_002112	exon7	c.G721A	p.V241I	CACAGACCTAGGG	.	27.0	4.0	22.0	0.0	.	156
HEG1	57493	ucsc.edu;bcgsc.ca	37	3	124724109	124724109	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HEG1	NM_020733	exon9	c.G3297T	p.T1099T	ACTTACCGTTTTG	.	43.0	4.0	34.0	0.0	.	70
HERC2	8924	ucsc.edu;bcgsc.ca	37	15	28386583	28386583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HERC2	NM_004667	exon78	c.G12010A	p.G4004R	CCTTCCCATCAGC	.	43.0	4.0	37.0	0.0	.	234
HIF1AN	55662	ucsc.edu;bcgsc.ca	37	10	102306918	102306918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HIF1AN	NM_017902	exon7	c.A916G	p.I306V	AAGAGAATTGAAT	.	31.0	4.0	30.0	0.0	.	226
HK3	3101	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176317835	176317835	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HK3	NM_002115	exon5	c.G522A	p.T174T	CAAGCCCGTCTGG	.	23.0	7.0	35.0	0.0	.	294
HLA-B	3106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31324160	31324161	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HLA-B	NM_005514	exon3	c.403_404insT	p.R135fs	GCCCGCGGAGGAG	.	40.0	13.0	46.0	0.0	.	90
HMGN2P46	283651	ucsc.edu;mdanderson.org	37	15	45848235	45848235	+	RNA	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	.	.	.	.	GCTTTTTTTTTTT	.	62.0	17.0	55.0	0.0	.	.
HSPA1L	3305	ucsc.edu;bcgsc.ca	37	6	31778553	31778553	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HSPA1L	NM_005527	exon2	c.T1197C	p.A399A	CAGGGGAGCCACG	.	42.0	5.0	47.0	0.0	.	230
HTR1A	3350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63256420	63256420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HTR1A	NM_000524	exon1	c.A1127T	p.H376L	GGCATGTGGCAGC	.	63.0	24.0	61.0	0.0	.	94
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	114141874	114141874	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HTR2C	NM_000868	exon6	c.G1273T	p.E425X	GTGATCGAGAAAG	.	196.0	74.0	216.0	0.0	.	133
IKZF3	22806	ucsc.edu;bcgsc.ca	37	17	37922281	37922281	+	Missense_Mutation	SNP	G	G	T	rs114183106	by1000genomes;alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	IKZF3	NM_012481	exon8	c.C1292A	p.P431Q	ATGGGCGGGGGCT	.	63.0	7.0	64.0	0.0	G|0.995;A|0.005	971
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102988510	102988510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	IL18R1	NM_003855	exon3	c.A400C	p.K134Q	GTTAAAAAATTTT	.	178.0	65.0	190.0	0.0	.	93
IL31RA	133396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55202077	55202077	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	IL31RA	NM_001242637	exon9	c.G1213C	p.E405Q	TCCTGGGAATCTG	.	54.0	25.0	57.0	0.0	.	91
INO80E	283899	ucsc.edu;bcgsc.ca	37	16	30012145	30012145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	INO80E	NM_173618	exon4	c.C272A	p.P91Q	ACACACCGGCCCC	.	21.0	4.0	27.0	0.0	.	91
ITGA1	3672	broad.mit.edu;mdanderson.org	37	5	52084218	52084218	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ITGA1	NM_181501	exon1	c.G31C	p.V11L	CCAGGGGTCGCTG	.	14.0	6.0	16.0	0.0	.	228
JAG2	3714	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105611364	105611364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	JAG2	NM_002226	exon24	c.G2987A	p.R996H	AGGGAGCGGATCC	.	49.0	21.0	55.0	1.0	.	846
JAK2	3717	ucsc.edu;bcgsc.ca	37	9	5064935	5064935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	JAK2	NM_004972	exon9	c.A1109G	p.D370G	TAATTGATGGATA	.	42.0	4.0	49.0	0.0	.	75307
KAZALD1	81621	ucsc.edu;bcgsc.ca	37	10	102824163	102824163	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KAZALD1	NM_030929	exon3	c.C657A	p.P219P	TGACCCCCACATC	.	37.0	4.0	33.0	0.0	.	90
KCNS1	3787	ucsc.edu;bcgsc.ca	37	20	43723974	43723974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KCNS1	NM_002251	exon5	c.A1118G	p.Y373C	TCACGGTAGCTGT	.	31.0	4.0	33.0	0.0	.	90
KDM2B	84678	ucsc.edu;bcgsc.ca	37	12	121878722	121878722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KDM2B	NM_032590	exon21	c.C3507A	p.S1169R	ACTGGAGCTGCAA	.	41.0	4.0	52.0	1.0	.	638
KIAA0146	23514	ucsc.edu;bcgsc.ca	37	8	48625238	48625238	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KIAA0146	NM_001080394	exon15	c.G1992A	p.L664L	TCTGCTGCTTCTG	.	56.0	5.0	57.0	0.0	.	68
KIAA1755	85449	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36874514	36874514	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KIAA1755	NM_001029864	exon2	c.C18T	p.L6L	TGTGTCGAGGGAT	.	26.0	10.0	28.0	0.0	.	95
KIF18B	146909	ucsc.edu;bcgsc.ca	37	17	43013645	43013645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KIF18B	NM_001264573	exon2	c.A68G	p.D23G	TGACTGTCCAGCT	.	21.0	4.0	23.0	0.0	.	70
KRT36	8689	ucsc.edu;bcgsc.ca	37	17	39646095	39646095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KRT36	NM_003771	exon1	c.C22A	p.P8T	AGGTAGGGGTGCA	.	41.0	4.0	35.0	0.0	.	90
KRT6A	3853	ucsc.edu;bcgsc.ca	37	12	52881662	52881662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	KRT6A	NM_005554	exon9	c.A1537G	p.S513G	AGCTGCTTCCTCC	.	49.0	4.0	52.0	0.0	.	27
LAMC3	10319	ucsc.edu;bcgsc.ca	37	9	133954597	133954597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LAMC3	NM_006059	exon23	c.C3839A	p.A1280E	CAGTTGCATCATG	.	43.0	4.0	38.0	0.0	.	93
LCMT1	51451	ucsc.edu;bcgsc.ca	37	16	25139863	25139863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LCMT1	NM_016309	exon2	c.A181G	p.R61G	AAAGAGAGGAAAG	.	32.0	5.0	42.0	0.0	.	22
LIPI	149998	ucsc.edu;bcgsc.ca	37	21	15558358	15558358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LIPI	NM_198996	exon3	c.C528A	p.F176L	ACCTATGAAATGA	.	35.0	4.0	74.0	0.0	.	70
LRIF1	55791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111494007	111494007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LRIF1	NM_018372	exon2	c.A1499G	p.K500R	CTTCCTTTTCTAG	.	128.0	44.0	135.0	0.0	.	93
LRP4	4038	ucsc.edu;bcgsc.ca	37	11	46897041	46897041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LRP4	NM_002334	exon27	c.G3891A	p.M1297I	CATGTCCATGAGG	.	21.0	4.0	26.0	0.0	.	94
LRRC4	64101	ucsc.edu;bcgsc.ca	37	7	127669957	127669957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LRRC4	NM_022143	exon2	c.A737G	p.K246R	CAGAGCTTCTTGA	.	45.0	4.0	41.0	0.0	.	154
MATR3	9782	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	138643894	138643894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MATR3	NM_018834	exon2	c.T790C	p.S264P	GAGAGATCTCTCT	.	79.0	35.0	52.0	1.0	.	91
ME3	10873	ucsc.edu;bcgsc.ca	37	11	86161034	86161034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ME3	NM_006680	exon10	c.G1028A	p.G343D	GCAATGCCCATAG	.	30.0	4.0	28.0	0.0	.	515
MEI1	150365	ucsc.edu;bcgsc.ca	37	22	42128267	42128267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MEI1	NM_152513	exon10	c.G1115A	p.R372K	TGGTGAGGAGCCT	.	25.0	4.0	40.0	0.0	.	70
MFI2	4241	ucsc.edu;bcgsc.ca	37	3	196743126	196743126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MFI2	NM_005929	exon8	c.A1015G	p.T339A	CATAGGTCTGTGT	.	39.0	4.0	35.0	0.0	.	90
MFNG	4242	ucsc.edu;bcgsc.ca	37	22	37875474	37875474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MFNG	NM_002405	exon4	c.G470T	p.R157I	AAGGCTCTCAGAA	.	44.0	4.0	60.0	0.0	.	658
MORN1	79906	ucsc.edu;bcgsc.ca	37	1	2317315	2317315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MORN1	NM_024848	exon5	c.G380T	p.R127L	CCATCCCGGTCCA	.	34.0	4.0	78.0	1.0	.	92
MST1	4485	ucsc.edu;bcgsc.ca	37	3	49722242	49722242	+	Silent	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MST1	NM_020998	exon15	c.A1698T	p.L566L	CCGCTGTAGGCTT	.	56.0	5.0	70.0	0.0	.	278
MTMR4	9110	ucsc.edu;mdanderson.org	37	17	56573314	56573314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MTMR4	NM_004687	exon16	c.G2189A	p.G730E	GCTGGTCCCTTAG	.	19.0	9.0	15.0	0.0	.	91
MTX3	345778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79287047	79287047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001010891	exon1	c.G15T	p.L5F	GAGTTCCAAGGGG	.	26.0	14.0	27.0	0.0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057886	9057886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MUC16	NM_024690	exon3	c.G29560C	p.V9854L	TGAAAACAGTGGT	.	91.0	40.0	92.0	0.0	.	566
MUTYH	4595	ucsc.edu;bcgsc.ca	37	1	45798502	45798502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MUTYH	NM_001128425	exon7	c.T509C	p.V170A	TGATTCACCTCCT	.	50.0	5.0	91.0	1.0	.	1083
MXRA7	439921	ucsc.edu;bcgsc.ca	37	17	74684251	74684251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MXRA7	NM_001008529	exon2	c.A350G	p.E117G	TCCTGCTCCTCTT	.	44.0	5.0	50.0	1.0	.	90
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10404676	10404676	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYH1	NM_005963	exon27	c.C3489A	p.A1163A	AATCTGGGCTGAG	.	40.0	26.0	100.0	0.0	.	171
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10353951	10353951	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYH4	NM_017533	exon30	c.4000delG	p.A1334fs	CATGGGCCAGAGT	.	31.0	18.0	49.0	0.0	.	102
MYL6	4637	ucsc.edu;bcgsc.ca	37	12	56553889	56553889	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYL6	NM_079423	exon4	c.C306A	p.G102G	AAATGGCACCGTC	.	35.0	5.0	51.0	0.0	.	91
MYO1A	4640	ucsc.edu;bcgsc.ca	37	12	57441109	57441109	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYO1A	NM_005379	exon5	c.A408G	p.L136L	AGACTGTAGCAGC	.	42.0	4.0	40.0	0.0	.	231
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2024362	2024362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYOM2	NM_003970	exon11	c.G1262A	p.R421Q	TGGACCGGTGAGC	.	57.0	17.0	79.0	0.0	.	95
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	118975959	118975959	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NDST3	NM_004784	exon2	c.A894G	p.T298T	GCTGACATTGTCC	.	60.0	23.0	69.0	0.0	.	153
NEURL4	84461	ucsc.edu;bcgsc.ca	37	17	7232370	7232370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NEURL4	NM_001005408	exon1	c.A262G	p.T88A	GGACGGTGAAGAC	.	11.0	4.0	19.0	0.0	.	46
NFKB1	4790	ucsc.edu;bcgsc.ca	37	4	103528881	103528881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NFKB1	NM_003998	exon19	c.A2200G	p.R734G	TCCACCAGGCTGG	.	22.0	4.0	40.0	0.0	.	912
NHSL1	57224	ucsc.edu;bcgsc.ca	37	6	138754407	138754407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NHSL1	NM_020464	exon5	c.G1087A	p.G363S	GGTGACCTCTCTG	.	37.0	4.0	64.0	0.0	.	68
NRXN1	9378	ucsc.edu;bcgsc.ca	37	2	50847255	50847255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NRXN1	NM_001135659	exon9	c.G1345A	p.G449R	CAGACCCCAGCAT	.	38.0	4.0	51.0	0.0	.	92
NTRK3	4916	ucsc.edu;bcgsc.ca	37	15	88727470	88727470	+	Silent	SNP	G	G	T	rs201222990	alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NTRK3	NM_001243101	exon4	c.C309A	p.T103T	AAGTCCGGTGTAG	.	41.0	4.0	45.0	0.0	G|0.999;A|0.001	3538
NTSR2	23620	ucsc.edu;bcgsc.ca	37	2	11798785	11798785	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NTSR2	NM_012344	exon4	c.A1053G	p.S351S	CACAGCTGAGCTG	.	46.0	4.0	60.0	1.0	.	946
NUF2	83540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163325198	163325198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NUF2	NM_145697	exon14	c.A1334G	p.Y445C	ACTCCTATGCTAA	.	272.0	65.0	207.0	0.0	.	231
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154042865	154042865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NUP210L	NM_001159484	exon17	c.T2438C	p.F813S	GAACTGAAATTAT	.	142.0	47.0	121.0	0.0	.	77
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145112593	145112593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OPLAH	NM_017570	exon10	c.G1180A	p.A394T	GATTAGCATCCGT	.	48.0	22.0	58.0	0.0	.	68
OPN4	94233	ucsc.edu;bcgsc.ca	37	10	88419195	88419195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OPN4	NM_001030015	exon6	c.T803C	p.F268S	ACATCTTCATCTT	.	45.0	4.0	51.0	0.0	.	69
OR13H1	347468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130678192	130678192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OR13H1	NM_001004486	exon1	c.A145G	p.I49V	TTTCTTATTCACT	.	243.0	89.0	210.0	1.0	.	108
OR1N1	138883	ucsc.edu;bcgsc.ca	37	9	125288752	125288752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OR1N1	NM_012363	exon1	c.C821A	p.A274E	TACATTGCAGCTG	.	40.0	4.0	43.0	0.0	.	133
OR8H1	219469	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	56057883	56057883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OR8H1	NM_001005199	exon1	c.C656A	p.S219Y	AGAATGGACACAT	.	98.0	39.0	79.0	1.0	.	71
PABPC3	5042	ucsc.edu;bcgsc.ca	37	13	25671638	25671638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PABPC3	NM_030979	exon1	c.G1302T	p.Q434H	TGCTCAGGGTGCC	.	53.0	5.0	65.0	0.0	.	72
PAN2	9924	ucsc.edu;bcgsc.ca	37	12	56713721	56713721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PAN2	NM_001127460	exon21	c.C2885T	p.P962L	ATCAGTGGAATAA	.	42.0	4.0	35.0	0.0	.	702
PAPL	0	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39591841	39591841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001004318	exon9	c.A967G	p.K323E	TTCTACAAATATG	.	43.0	19.0	17.0	0.0	.	.
PATE1	160065	ucsc.edu;bcgsc.ca	37	11	125616219	125616219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PATE1	NM_138294	exon1	c.T20C	p.L7P	TCTTGCTGGAACT	.	54.0	5.0	38.0	0.0	.	90
PC	5091	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66618382	66618382	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PC	NM_000920	exon17	c.C2236T	p.L746L	TCAGCAGCCCGGC	.	35.0	17.0	60.0	0.0	.	228
PDCD11	22984	ucsc.edu;bcgsc.ca	37	10	105178381	105178381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PDCD11	NM_014976	exon15	c.A2096G	p.E699G	AGAGCGAGGGGCG	.	31.0	5.0	40.0	1.0	.	275
PF4V1	5197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74719566	74719566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PF4V1	NM_002620	exon2	c.G167A	p.R56K	GTCCCAGGCACAT	.	62.0	23.0	58.0	0.0	.	90
PIK3R4	30849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130427320	130427320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PIK3R4	NM_014602	exon10	c.A2348T	p.E783V	TCTTCCTCTTCCT	.	200.0	78.0	163.0	0.0	.	1471
PIK3R5	23533	ucsc.edu;bcgsc.ca	37	17	8790506	8790506	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PIK3R5	NM_001142633	exon12	c.C1812A	p.T604T	GTCATTGGTGCTC	.	30.0	5.0	70.0	0.0	.	1146
PLCL1	5334	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198950752	198950752	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLCL1	NM_006226	exon2	c.G2511A	p.E837E	CATGGAGCACGTA	.	112.0	47.0	127.0	1.0	.	228
PLEKHG1	57480	ucsc.edu;bcgsc.ca	37	6	151152713	151152713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLEKHG1	NM_001029884	exon16	c.G2466A	p.M822I	GTCTATGCCTCAT	.	27.0	4.0	38.0	0.0	.	92
PLIN2	123	ucsc.edu;bcgsc.ca	37	9	19126218	19126218	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLIN2	NM_001122	exon3	c.T120C	p.Y40Y	GTAGGGATACTGG	.	42.0	4.0	37.0	0.0	.	92
PLOD1	5351	ucsc.edu;bcgsc.ca	37	1	12027091	12027091	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLOD1	NM_000302	exon16	c.T1698C	p.C566C	GGCCTGTGATGAG	.	42.0	4.0	99.0	0.0	.	155
PLXDC1	57125	ucsc.edu;bcgsc.ca	37	17	37263727	37263727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PLXDC1	NM_020405	exon6	c.A644G	p.D215G	CCCTTGTCTTCCC	.	39.0	4.0	29.0	0.0	.	93
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63083509	63083509	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PPM1H	NM_020700	exon8	c.C1215T	p.Y405Y	TTTAATGTAGATG	.	40.0	15.0	45.0	0.0	.	637
PRMT6	55170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	107599362	107599362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PRMT6	NM_018137	exon1	c.C25T	p.L9F	AGAAAGCTTGAGT	.	34.0	14.0	37.0	0.0	.	90
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109242492	109242492	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PRPF38B	NM_018061	exon6	c.T1491C	p.S497S	AAAATCTAGAAAG	.	206.0	75.0	183.0	0.0	.	90
PRPF8	10594	ucsc.edu;bcgsc.ca	37	17	1561917	1561917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PRPF8	NM_006445	exon33	c.A5279T	p.E1760V	TAAGGCTCAGTGG	.	39.0	4.0	77.0	0.0	.	525
PRR26	414235	ucsc.edu;bcgsc.ca	37	10	708851	708851	+	RNA	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	.	.	.	.	CACTCTCGGGAGA	.	73.0	7.0	112.0	0.0	.	.
PSMD11	5717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30806343	30806343	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PSMD11	NM_002815	exon10	c.C987T	p.N329N	TGATAACTTACTA	.	106.0	20.0	63.0	0.0	.	91
PSTPIP1	9051	ucsc.edu;bcgsc.ca	37	15	77310573	77310573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PSTPIP1	NM_003978	exon2	c.G121A	p.E41K	ATGGAGGAGCTAC	.	33.0	4.0	33.0	0.0	.	23
PTPDC1	138639	ucsc.edu;bcgsc.ca	37	9	96860152	96860152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PTPDC1	NM_001253829	exon6	c.T1304C	p.L435P	AGTGCCTTCAACC	.	36.0	4.0	30.0	0.0	.	227
PTPN13	5783	ucsc.edu;bcgsc.ca	37	4	87684048	87684048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PTPN13	NM_080683	exon24	c.A3722G	p.E1241G	TGCGGGAAGGAAG	.	39.0	4.0	55.0	0.0	.	230
RAB12	201475	broad.mit.edu;bcgsc.ca	37	18	8633188	8633188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RAB12	NM_001025300	exon3	c.G289T	p.D97Y	CTTAGGGACACAG	.	77.0	6.0	52.0	0.0	.	68
RAB25	57111	ucsc.edu;bcgsc.ca	37	1	156035736	156035736	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RAB25	NM_020387	exon2	c.C78A	p.T26T	GAAGACCAATCTA	.	44.0	5.0	37.0	0.0	.	227
RAPSN	5913	ucsc.edu;bcgsc.ca	37	11	47463162	47463162	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RAPSN	NM_005055	exon6	c.912+1G>T	.	ACCTCACCTTGTC	.	57.0	5.0	63.0	0.0	.	91
RASGRF1	5923	ucsc.edu;bcgsc.ca	37	15	79339094	79339094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RASGRF1	NM_001145648	exon5	c.T872C	p.L291P	CTGTTCAGGAAGA	.	38.0	4.0	81.0	0.0	.	662
RBM48	84060	ucsc.edu;bcgsc.ca	37	7	92163819	92163819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_032120	exon4	c.G552T	p.L184F	TGCTTTGAACACT	.	39.0	4.0	58.0	0.0	.	.
RC3H1	149041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173912722	173912722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RC3H1	NM_172071	exon17	c.A2993G	p.E998G	TTTGCCTCCCTCT	.	54.0	6.0	35.0	0.0	.	92
RELB	5971	ucsc.edu;bcgsc.ca	37	19	45525332	45525332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RELB	.	.	.	.	GGGCTGCGGGAGG	.	39.0	4.0	39.0	0.0	.	847
RGS9	8787	ucsc.edu;bcgsc.ca	37	17	63193341	63193341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RGS9	NM_003835	exon13	c.C958T	p.L320F	TACTTCCTCAAGA	.	45.0	6.0	31.0	0.0	.	94
ROS1	6098	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117718163	117718163	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ROS1	NM_002944	exon7	c.C694T	p.L232L	TGATCAGCCTTAA	.	51.0	39.0	113.0	1.0	.	1353
RPS6KA3	6197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	20206011	20206011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RPS6KA3	NM_004586	exon9	c.C709T	p.P237S	CTTCTGGAGCCAT	.	177.0	71.0	202.0	0.0	.	1504
RUNDC1	146923	ucsc.edu;bcgsc.ca	37	17	41143436	41143436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RUNDC1	NM_173079	exon5	c.C1545A	p.S515R	ACAGAGCCTACTG	.	36.0	4.0	26.0	0.0	.	90
RUSC2	9853	ucsc.edu;bcgsc.ca	37	9	35555121	35555121	+	Silent	SNP	C	C	T	rs149030772	byfrequency	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RUSC2	NM_014806	exon3	c.C2079T	p.P693P	ACTGCCCATCCAG	.	29.0	4.0	33.0	0.0	C|1.000;T|0.000	91
RYR1	6261	ucsc.edu;bcgsc.ca	37	19	38939397	38939397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RYR1	NM_001042723	exon11	c.C1066A	p.L356I	CTGTGGCTCACCT	.	36.0	5.0	38.0	0.0	.	100
SCN2B	6327	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118037718	118037718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SCN2B	NM_004588	exon4	c.A532G	p.M178V	CCACCATCAGCAC	.	59.0	20.0	65.0	1.0	.	90
SCNN1B	6338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23366664	23366664	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SCNN1B	NM_000336	exon4	c.T630C	p.S210S	CACCAGTGCTACC	.	34.0	29.0	74.0	0.0	.	157
SEMA6D	80031	ucsc.edu;bcgsc.ca	37	15	48063850	48063850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SEMA6D	NM_153618	exon19	c.C3090A	p.S1030R	GAGCAGCTACACC	.	59.0	5.0	31.0	0.0	.	138
SENP6	26054	ucsc.edu;bcgsc.ca	37	6	76376473	76376473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SENP6	NM_015571	exon10	c.G1040T	p.R347I	CTAACAGAAGAGA	.	34.0	4.0	39.0	0.0	.	660
SESN2	83667	ucsc.edu;bcgsc.ca	37	1	28599950	28599950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SESN2	NM_031459	exon6	c.A832G	p.T278A	GAGGGGACGTCCC	.	33.0	4.0	59.0	0.0	.	230
SETDB2	83852	ucsc.edu;bcgsc.ca	37	13	50051084	50051084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SETDB2	NM_031915	exon7	c.A814G	p.R272G	AAGTACAGAAAGA	.	38.0	5.0	30.0	0.0	.	91
SFI1	9814	ucsc.edu;bcgsc.ca	37	22	32009157	32009157	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SFI1	NM_001007467	exon25	c.G2520T	p.A840A	GCGGGCGACAGTG	.	24.0	5.0	36.0	0.0	.	90
SIX2	10736	ucsc.edu;bcgsc.ca	37	2	45235966	45235966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SIX2	NM_016932	exon1	c.C284A	p.A95E	TTCTCCGCCTCGA	.	46.0	4.0	41.0	0.0	.	91
SLC26A4	5172	broad.mit.edu;bcgsc.ca	37	7	107315422	107315422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC26A4	NM_000441	exon6	c.A633G	p.I211M	ATTCATAGTGAGG	.	101.0	7.0	88.0	0.0	.	96
SLC30A1	7779	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	211751520	211751520	+	Silent	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC30A1	NM_021194	exon1	c.C435G	p.G145G	GCCGTGGCCGGAG	.	19.0	9.0	30.0	0.0	.	93
SLC35C1	55343	ucsc.edu;bcgsc.ca	37	11	45827722	45827722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC35C1	NM_018389	exon1	c.T370C	p.F124L	GTGGTCTTCATCG	.	25.0	4.0	22.0	0.0	.	90
SLC39A8	64116	ucsc.edu;bcgsc.ca	37	4	103180632	103180632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC39A8	NM_001135147	exon10	c.C1306T	p.H436Y	GTAAATGAAGTTG	.	56.0	5.0	54.0	0.0	.	90
SLC4A4	8671	broad.mit.edu;bcgsc.ca	37	4	72423587	72423587	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SLC4A4	NM_001098484	exon22	c.C2922A	p.I974I	TGCTATCATTTTT	.	90.0	7.0	91.0	0.0	.	95
SMC5	23137	ucsc.edu;bcgsc.ca	37	9	72912940	72912940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SMC5	NM_015110	exon9	c.G1112T	p.R371M	GACAGAGGAGAAT	.	44.0	4.0	37.0	0.0	.	229
SORCS2	57537	ucsc.edu;bcgsc.ca	37	4	7730138	7730138	+	Silent	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SORCS2	NM_020777	exon22	c.C2931A	p.T977T	CAACACCCCTGAG	.	35.0	4.0	30.0	0.0	.	91
SP1	6667	ucsc.edu;bcgsc.ca	37	12	53775988	53775988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SP1	NM_138473	exon3	c.A257G	p.Q86R	CGAGTCAGTCAGG	.	37.0	4.0	29.0	0.0	.	228
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104118857	104118857	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	STAB2,NS,carcinoma,0	STAB2	NM_017564	exon45	c.C4788T	p.R1596R	CTGCCGCGGCAGC	.	32.0	18.0	52.0	0.0	.	104
STAT5A	6776	ucsc.edu;bcgsc.ca	37	17	40461433	40461433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	STAT5A	NM_003152	exon19	c.C2153A	p.A718D	GCAGCGCCACGTA	.	40.0	4.0	60.0	1.0	.	846
STK32C	282974	ucsc.edu;bcgsc.ca	37	10	134036201	134036201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	STK32C	NM_173575	exon10	c.A1195G	p.K399E	GCTTCTTCTTCTT	.	43.0	4.0	47.0	0.0	.	1083
STRIP2	57464	ucsc.edu;bcgsc.ca	37	7	129122681	129122681	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001134336	exon20	c.2050-2A>G	.	ATGAACAGATGCT	.	59.0	5.0	41.0	0.0	.	.
STXBP5L	9515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120876465	120876465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	STXBP5L	NM_014980	exon9	c.A868G	p.I290V	ACCACAATTCCAC	.	51.0	12.0	70.0	0.0	.	77
SUV420H1	51111	ucsc.edu;bcgsc.ca	37	11	67942644	67942644	+	Silent	SNP	C	C	T	rs140940573	byfrequency	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SUV420H1	NM_017635	exon5	c.G384A	p.R128R	AATAGGCCTAAAT	.	38.0	4.0	52.0	0.0	C|0.999;T|0.001	228
SYNE1	23345	ucsc.edu;bcgsc.ca	37	6	152697950	152697950	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SYNE1	NM_033071	exon57	c.A9128T	p.Y3043F	CCACTGTAGGTAC	.	35.0	4.0	47.0	0.0	.	607
SYT16	83851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	62550927	62550927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SYT16	NM_031914	exon5	c.C1448T	p.P483L	GGTCTCCGCTCAG	.	57.0	27.0	55.0	0.0	.	23
TACC2	10579	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123846141	123846141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TACC2	NM_206862	exon4	c.A4126G	p.R1376G	ATGGAGAGGATGG	.	52.0	7.0	46.0	0.0	.	296
TCEANC2	127428	ucsc.edu;bcgsc.ca	37	1	54561960	54561960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TCEANC2	NM_153035	exon5	c.G441T	p.M147I	TTAGATGGATCAC	.	39.0	4.0	73.0	0.0	.	91
TECTA	7007	ucsc.edu;bcgsc.ca	37	11	121008141	121008141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TECTA	NM_005422	exon10	c.C2953A	p.P985T	GAGTGCCCAGAGA	.	38.0	4.0	39.0	0.0	.	225
TET3	200424	ucsc.edu;bcgsc.ca	37	2	74317138	74317138	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_144993	exon5	c.T2598C	p.P866P	GACACCTCGCAAG	.	36.0	4.0	49.0	0.0	.	.
TJP2	9414	ucsc.edu;bcgsc.ca	37	9	71864355	71864355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TJP2	NM_001170416	exon20	c.T3038C	p.L1013P	ATCAACTTAGGGA	.	43.0	4.0	54.0	0.0	.	115
TMPRSS15	5651	ucsc.edu;bcgsc.ca	37	21	19670135	19670135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TMPRSS15	NM_002772	exon19	c.C2177T	p.S726L	TTTGATGAGTTTC	.	29.0	4.0	47.0	0.0	.	160
TNFAIP8L2	79626	ucsc.edu;bcgsc.ca	37	1	151131649	151131649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TNFAIP8L2	NM_024575	exon2	c.T476C	p.L159P	CGGCCCTCTATGG	.	32.0	4.0	23.0	0.0	.	90
TNRC18	84629	ucsc.edu;bcgsc.ca	37	7	5364783	5364783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TNRC18	NM_001080495	exon20	c.C6244A	p.L2082M	CGGTCAGGGAGCT	.	47.0	4.0	56.0	0.0	.	46
TNRC6A	27327	ucsc.edu;bcgsc.ca	37	16	24816374	24816374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TNRC6A	NM_014494	exon14	c.G4024T	p.A1342S	ACAGCAGCACAAC	.	22.0	4.0	35.0	0.0	.	92
TOX3	27324	ucsc.edu;bcgsc.ca	37	16	52497937	52497937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TOX3	NM_001080430	exon3	c.T317C	p.F106S	GGGGGAAACTGGG	.	43.0	4.0	73.0	0.0	.	68
TRPC4	7223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38248410	38248410	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TRPC4	NM_003306	exon5	c.C1329T	p.S443S	ATATAAGGAGTTC	.	106.0	40.0	106.0	0.0	.	159
TRPM2	7226	ucsc.edu;bcgsc.ca	37	21	45859038	45859038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TRPM2	NM_003307	exon30	c.A4256G	p.K1419R	TGCTGAAGTGCGG	.	45.0	4.0	64.0	0.0	.	92
TSPAN14	81619	ucsc.edu;bcgsc.ca	37	10	82276005	82276005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TSPAN14	NM_030927	exon8	c.C667A	p.Q223K	TGCATCCAGGCGC	.	41.0	4.0	38.0	0.0	.	91
TSPAN3	10099	ucsc.edu;bcgsc.ca	37	15	77339189	77339189	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TSPAN3	NM_005724	exon7	c.A750G	p.G250G	ATAGGTTCCGCCA	.	44.0	4.0	38.0	0.0	.	90
TSPAN7	7102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38525510	38525510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TSPAN7	NM_004615	exon2	c.G217C	p.G73R	GTCTTTGGCCTGT	.	121.0	43.0	92.0	0.0	.	63
UBA1	7317	ucsc.edu;bcgsc.ca	37	X	47065756	47065756	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	UBA1	NM_153280	exon16	c.G1851A	p.S617S	AGAGTCGTACAGT	.	43.0	4.0	36.0	0.0	.	227
UGGT1	56886	ucsc.edu;bcgsc.ca	37	2	128918817	128918817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	UGGT1	NM_020120	exon25	c.C2800A	p.Q934K	CATATTCAACAGC	.	35.0	4.0	40.0	0.0	.	91
UNC13A	23025	ucsc.edu;bcgsc.ca	37	19	17753723	17753723	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	UNC13A	NM_001080421	exon19	c.C2403T	p.H801H	ACTGATGTGGAGC	.	33.0	4.0	34.0	0.0	.	25
VPS13D	55187	ucsc.edu;bcgsc.ca	37	1	12379555	12379555	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	VPS13D	NM_015378	exon32	c.T7416C	p.G2472G	TCCAGGTACGGAG	.	41.0	5.0	54.0	0.0	.	95
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85663040	85663040	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	WDFY3	NM_014991	exon38	c.A6108G	p.G2036G	GTAGCTTCCTCCA	.	93.0	38.0	86.0	0.0	.	93
XKR5	389610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6681084	6681084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	XKR5	NM_207411	exon4	c.T596A	p.L199Q	TAGAACAGAACCA	.	85.0	35.0	82.0	0.0	.	90
XPNPEP1	7511	ucsc.edu;bcgsc.ca	37	10	111642310	111642310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	XPNPEP1	NM_001167604	exon10	c.G921T	p.Q307H	ATGCACCTGGATC	.	47.0	4.0	44.0	0.0	.	94
XRCC2	7516	ucsc.edu;bcgsc.ca	37	7	152346389	152346389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	XRCC2	NM_005431	exon3	c.C181A	p.L61I	CTGTTAGGTGATA	.	40.0	4.0	32.0	0.0	.	1084
ZCCHC6	79670	ucsc.edu;bcgsc.ca	37	9	88958022	88958022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZCCHC6	NM_024617	exon6	c.G1054T	p.D352Y	TTACATCCGAATT	.	45.0	4.0	47.0	0.0	.	92
ZDHHC13	54503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	19172329	19172329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZDHHC13	NM_019028	exon6	c.A575G	p.K192R	CTCACAAAGTAAT	.	149.0	51.0	147.0	1.0	.	90
ZEB1	6935	ucsc.edu;bcgsc.ca	37	10	31810468	31810468	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZEB1	NM_001174096	exon7	c.T2208C	p.L736L	ACCTCTTGATCTT	.	36.0	4.0	45.0	0.0	.	518
ZKSCAN7	55888	ucsc.edu;bcgsc.ca	37	3	44612400	44612400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_018651	exon6	c.A1798G	p.I600V	GAGCGAATTCATA	.	46.0	4.0	44.0	0.0	.	.
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu	37	19	58132394	58132399	+	In_Frame_Del	DEL	CTTGTT	CTTGTT	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	CTTGTT	CTTGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF134	NM_003435	exon3	c.907_912del	p.303_304del	TCTACACTTGTTC	.	52.0	10.0	34.0	0.0	.	226
ZNF185	7739	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152101462	152101462	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF185	NM_001178108	exon14	c.G1068A	p.T356T	AGCCACGGGCTCC	.	89.0	41.0	102.0	1.0	.	133
ZNF234	10780	ucsc.edu;bcgsc.ca	37	19	44661469	44661469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_006630	exon6	c.G1300A	p.G434S	GTATGTGGTAAAG	.	46.0	4.0	56.0	0.0	.	.
ZNF256	10172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58453498	58453498	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF256	NM_005773	exon3	c.T678C	p.R226R	CTGAACACGTACA	.	115.0	35.0	68.0	0.0	.	92
ZNF333	84449	ucsc.edu;bcgsc.ca	37	19	14817512	14817512	+	Silent	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF333	NM_032433	exon7	c.T438A	p.A146A	GGCCGCTATGCAG	.	25.0	4.0	23.0	0.0	.	92
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58004285	58004285	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF419	NM_001098491	exon5	c.C363T	p.L121L	ACTGCTCAGTTCA	.	122.0	41.0	77.0	0.0	.	90
ZNF596	169270	ucsc.edu;bcgsc.ca	37	8	192905	192905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF596	NM_173539	exon3	c.G31T	p.D11Y	TTCGAGGATATCA	.	32.0	4.0	32.0	0.0	.	90
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	185800964	185800964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF804A	NM_194250	exon4	c.C841T	p.P281S	CATCCACCAGAGG	.	46.0	16.0	24.0	0.0	.	163
ZNF878	729747	ucsc.edu;bcgsc.ca	37	19	12155990	12155990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001080404	exon4	c.G226A	p.E76K	GACTTTCTTTACT	.	40.0	4.0	48.0	0.0	.	.
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156106182	156106183	+	Missense_Mutation	DNP	GG	GG	TA	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	.	.	.	p.D446N	GGAGGTGGATGAG	.	68.0	35.0	53.0	0.0	.	.
