Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCF3	55324	hgsc.bcm.edu;bcgsc.ca	37	3	183907370	183907370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABCF3	NM_018358	exon13	c.T1139C	p.V380A	TAGTCGTCTCCCA	.	151.0	8.0	124.0	0.0	.	94
ADAD2	161931	hgsc.bcm.edu;bcgsc.ca	37	16	84229269	84229269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAD2	NM_139174	exon7	c.A1264G	p.S422G	TACATCAGCAACA	.	70.0	4.0	118.0	0.0	.	68
ADAMTS18	170692	hgsc.bcm.edu;bcgsc.ca	37	16	77326981	77326981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAMTS18	NM_199355	exon20	c.T3181C	p.W1061R	CGCTCCACGAAGA	.	63.0	4.0	44.0	0.0	.	1036
ALK	238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	29451807	29451807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALK	NM_004304	exon16	c.G2758T	p.G920C	CGAAACCCCCTCT	.	385.0	164.0	331.0	1.0	.	3833
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	56247584	56247584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALPK2	NM_052947	exon4	c.G424T	p.E142X	CCTTCTCATCAAT	.	306.0	125.0	270.0	1.0	.	765
AP3M2	10947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42022975	42022975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP3M2	NM_001134296	exon7	c.C700T	p.H234Y	AGCTTCCATCCTT	.	329.0	139.0	245.0	0.0	.	90
AP3S1	1176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115249174	115249174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP3S1	NM_001284	exon6	c.C569A	p.P190H	ACCTGCCCTCTTT	.	230.0	40.0	225.0	0.0	.	90
ARHGAP32	9743	hgsc.bcm.edu;bcgsc.ca	37	11	128932247	128932247	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGAP32	NM_001142685	exon9	c.A849G	p.G283G	AATGTCTCCCACC	.	47.0	4.0	43.0	0.0	.	231
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73076917	73076917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGEF17	NM_014786	exon20	c.C5920A	p.R1974S	CACGTCCGCTTCT	.	90.0	28.0	72.0	0.0	.	227
ASXL3	80816	hgsc.bcm.edu;bcgsc.ca	37	18	31326119	31326119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ASXL3	NM_030632	exon12	c.T6307C	p.Y2103H	GTTTCCTATGACC	.	80.0	4.0	48.0	0.0	.	49
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10527419	10527419	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATF7IP2	NM_024997	exon4	c.G873A	p.E291E	AAACGAGGAAAAT	.	190.0	47.0	168.0	0.0	.	186
ATP12A	479	hgsc.bcm.edu;bcgsc.ca	37	13	25266681	25266681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP12A	NM_001185085	exon9	c.A1201G	p.T401A	ACTGGGACACTGA	.	125.0	7.0	101.0	0.0	.	137
BANK1	55024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	102783739	102783739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BANK1	NM_017935	exon4	c.G681T	p.E227D	TGTAGAGGTTGAA	.	187.0	73.0	144.0	0.0	.	93
BET3L	100128327	hgsc.bcm.edu;bcgsc.ca	37	6	116866643	116866643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001139444	exon1	c.A35G	p.H12R	ATTTTATGGTATT	.	98.0	4.0	189.0	0.0	.	.
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32953916	32953924	+	In_Frame_Del	DEL	GATTTATAT	GATTTATAT	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	GATTTATAT	GATTTATAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRCA2	NM_000059	exon23	c.8983_8991del	p.2995_2997del	TCATCAGATTTAT	.	168.0	17.0	181.0	0.0	.	3153
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32937516	32937516	+	Missense_Mutation	SNP	A	A	G	rs80359064		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRCA2	NM_000059	exon18	c.A8177G	p.Y2726C	GGTGGTATGCTGT	.	168.0	66.0	139.0	0.0	.	3153
C14orf1	11161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76117958	76117958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C14orf1	NM_007176	exon5	c.G363A	p.M121I	GACCAGCATACCC	.	104.0	37.0	76.0	0.0	.	90
C15orf52	388115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40628995	40628995	+	Silent	SNP	T	T	C	rs143912259		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C15orf52	NM_207380	exon8	c.A894G	p.K298K	CTGTAGTTTCTGG	.	74.0	39.0	64.0	0.0	T|1.000;C|0.000	153
C16orf46	123775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81095083	81095083	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C16orf46	NM_001100873	exon3	c.C871T	p.L291L	CGGTCAGCAGGGA	.	208.0	67.0	184.0	0.0	.	90
C16orf78	123970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49412388	49412388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C16orf78	NM_144602	exon3	c.G278A	p.G93E	CCTTAGGAAAGAG	.	43.0	14.0	42.0	0.0	.	90
C9orf173	441476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140147365	140147365	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C9orf173	NM_001004353	exon5	c.G744A	p.S248S	CCGCTCGCCGGCC	.	70.0	36.0	63.0	0.0	.	46
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67701207	67701207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CAND1	NM_018448	exon11	c.C2960T	p.T987M	TGGTTACGGCTGT	.	82.0	34.0	57.0	0.0	.	516
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219892384	219892384	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC108	NM_194302	exon13	c.C2199T	p.F733F	GATGGCGAAGGCT	.	255.0	84.0	185.0	0.0	.	94
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7510070	7510070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD163L1	NM_174941	exon19	c.A4292T	p.N1431I	CCATGGTTGGGGG	.	74.0	24.0	52.0	0.0	.	100
CD22	933	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35832037	35832037	+	Silent	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD22	NM_001185100	exon7	c.C1503G	p.V501V	GAATGTCCAGTGT	.	122.0	58.0	127.0	1.0	.	526
CEP164	22897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117222640	117222640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP164	NM_001271933	exon4	c.A329C	p.K110T	CCATTAAGAAGAA	.	87.0	6.0	57.0	0.0	.	69
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88486591	88486591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP290	NM_025114	exon29	c.G3328T	p.D1110Y	GTGCATCCAAATT	.	177.0	64.0	176.0	0.0	.	96
CEP44	80817	hgsc.bcm.edu;bcgsc.ca	37	4	175225512	175225512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP44	NM_001040157	exon6	c.T499C	p.S167P	ATGACCTCAGGAA	.	167.0	11.0	146.0	0.0	.	68
CHMP6	79643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78972946	78972946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHMP6	NM_024591	exon8	c.C599G	p.A200G	TGGCAGCTTCGTA	.	128.0	37.0	95.0	0.0	.	91
CHRM2	1129	ucsc.edu;mdanderson.org	37	7	136701056	136701056	+	RNA	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHRM2	.	.	.	.	GCTTGAGAAGAAT	.	232.0	54.0	170.0	0.0	.	94
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120172998	120172998	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CIT	NM_001206999	exon25	c.G3123A	p.T1041T	TCGTTCCGTGATC	.	450.0	155.0	371.0	0.0	.	399
CLPTM1L	81037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1331943	1331943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CLPTM1L	NM_030782	exon8	c.A947G	p.K316R	ATGCTCTTCTTCT	.	184.0	47.0	115.0	2.0	.	153
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7842848	7842848	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CNTROB	NM_001037144	exon8	c.T945C	p.A315A	GCAAGCTCTGACT	.	85.0	6.0	135.0	0.0	.	153
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117015214	117015214	+	Splice_Site	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL27A1	NM_032888	exon27	c.3141+2T>A	.	CCCAGGTAAGCAA	.	166.0	58.0	128.0	0.0	.	94
CPD	1362	hgsc.bcm.edu;bcgsc.ca	37	17	28770949	28770949	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CPD	NM_001304	exon11	c.T2503C	p.L835L	CGTCTCTTGGTTC	.	90.0	5.0	61.0	0.0	.	92
CSRNP2	81566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51457625	51457625	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CSRNP2	NM_030809	exon5	c.G1536T	p.T512T	ATTGTCCGTGCGG	.	152.0	71.0	154.0	0.0	.	90
CSRNP2	81566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51457641	51457641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CSRNP2	NM_030809	exon5	c.G1520T	p.S507I	GGGAGGCTTGAGG	.	169.0	76.0	166.0	0.0	.	90
CXCR5	643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118764607	118764607	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CXCR5	NM_001716	exon2	c.G354A	p.G118G	CCTGGGGACCTTC	.	177.0	42.0	173.0	0.0	.	721
CYGB	114757	hgsc.bcm.edu;bcgsc.ca	37	17	74527573	74527573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CYGB	NM_134268	exon2	c.T344C	p.L115P	TGCTTGAGGGCGT	.	119.0	5.0	57.0	0.0	.	90
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70694063	70694063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DDX50	NM_024045	exon9	c.C1348T	p.R450C	GCTGCCCGTGGTT	.	66.0	24.0	52.0	0.0	.	91
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	24517998	24517998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001082488	exon8	c.T653C	p.I218T	GACTTATCAAGAC	.	875.0	334.0	674.0	0.0	.	.
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	31497178	31497178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DMD	NM_004006	exon58	c.A8590G	p.S2864G	GAGTACTCATGAT	.	93.0	4.0	72.0	0.0	.	265
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7721766	7721766	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH2	NM_020877	exon68	c.T10524C	p.A3508A	CTTTGCTGTTAAA	.	57.0	33.0	80.0	0.0	.	102
DOCK1	1793	ucsc.edu;bcgsc.ca	37	10	128835998	128835998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DOCK1	NM_001380	exon19	c.T1865C	p.L622P	TGGGGCTCTTGAA	.	46.0	4.0	78.0	0.0	.	698
DRD3	1814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113850192	113850192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DRD3	NM_033663	exon6	c.A779C	p.Q260P	GTGTCCTGGCAGA	.	195.0	67.0	120.0	0.0	.	93
DUPD1	338599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	76818256	76818256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DUPD1	NM_001003892	exon1	c.T17A	p.V6E	GTCTTCACTTCTC	.	79.0	23.0	53.0	0.0	.	92
EIF4G2	1982	hgsc.bcm.edu;bcgsc.ca	37	11	10824623	10824623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EIF4G2	NM_001042559	exon11	c.A950G	p.D317G	CCATTGTCAAGAA	.	125.0	5.0	99.0	0.0	.	91
EP400	57634	hgsc.bcm.edu;bcgsc.ca	37	12	132527997	132527997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EP400	NM_015409	exon33	c.T6356C	p.F2119S	CTGACTTCATGGA	.	82.0	4.0	82.0	0.0	.	520
EPHB2	2048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23232489	23232489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EPHB2	NM_004442	exon10	c.G1778T	p.G593V	CCCCAGGCATGAA	.	89.0	38.0	99.0	0.0	.	1381
EVX1	2128	broad.mit.edu;mdanderson.org	37	7	27285622	27285622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EVX1	NM_001989	exon3	c.G802C	p.G268R	GCGGGCGGCCTGC	.	11.0	6.0	31.0	0.0	.	91
EXTL3	2137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28575571	28575571	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EXTL3	NM_001440	exon3	c.G1995T	p.V665V	CACGGTGGTGATG	.	165.0	94.0	222.0	1.0	.	92
F3	2152	hgsc.bcm.edu;bcgsc.ca	37	1	95001634	95001634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	F3	NM_001993	exon3	c.A299G	p.K100R	GTCTGCTTCACAT	.	121.0	5.0	108.0	0.0	.	90
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150908876	150908876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAT2	NM_001447	exon14	c.A9889G	p.S3297G	AGGAGCTCTTCCG	.	122.0	44.0	106.0	0.0	.	96
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147807217	147807217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FBXO38	NM_030793	exon15	c.G2360A	p.R787K	AAAGGAGAACTAG	.	100.0	33.0	82.0	0.0	.	231
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180036905	180036905	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FLT4	NM_182925	exon28	c.G3807T	p.V1269V	AAGTACCACAGAG	.	124.0	49.0	109.0	0.0	.	1490
FNTA	2339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	42939883	42939883	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FNTA	NM_002027	exon8	c.T876C	p.Y292Y	CAAATATCCTAAT	.	104.0	6.0	89.0	0.0	.	91
GALNT6	11226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51748219	51748219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GALNT6	NM_007210	exon12	c.C1813A	p.P605T	TGGCTGGCTTTTT	.	210.0	23.0	159.0	1.0	.	92
GAS2L2	246176	hgsc.bcm.edu;bcgsc.ca	37	17	34073039	34073039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GAS2L2	NM_139285	exon6	c.T1477C	p.S493P	TTGGAGAACGGAC	.	77.0	4.0	53.0	0.0	.	227
GIMAP8	155038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150171348	150171348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GIMAP8	NM_175571	exon4	c.A931G	p.N311D	TTAAAGAACATTG	.	126.0	31.0	63.0	0.0	.	95
GLDC	2731	hgsc.bcm.edu;bcgsc.ca	37	9	6554742	6554742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GLDC	NM_000170	exon19	c.T2242C	p.S748P	GGTGCGAGACATC	.	74.0	5.0	52.0	0.0	.	92
GMEB1	10691	hgsc.bcm.edu;bcgsc.ca	37	1	29040628	29040628	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GMEB1	NM_006582	exon10	c.T1065C	p.D355D	CCAGGATCACAGG	.	89.0	4.0	88.0	0.0	.	90
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89954088	89954088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPR98	NM_032119	exon21	c.T4745C	p.I1582T	CTTGTATACCAGA	.	189.0	73.0	165.0	0.0	.	103
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	236749177	236749177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HEATR1	NM_018072	exon16	c.G1992C	p.M664I	CTCAATCATCTTC	.	274.0	17.0	149.0	0.0	.	93
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65105654	65105654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HELZ	NM_014877	exon29	c.C4067T	p.P1356L	CGATTAGGGATTG	.	501.0	131.0	305.0	0.0	.	92
HEY2	23493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126080600	126080600	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HEY2	NM_012259	exon5	c.C666T	p.H222H	TGCCCACGGCTCT	.	48.0	32.0	80.0	0.0	.	658
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	30458995	30458995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HLA-E	NM_005516	exon4	c.C692G	p.P231R	TCTACCCTGCGGA	.	166.0	58.0	130.0	0.0	.	516
HNRNPUL1	11100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41800283	41800283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HNRNPUL1	NM_007040	exon9	c.C1307A	p.T436K	AGACCACATGGGC	.	235.0	82.0	190.0	0.0	.	69
HPSE2	60495	hgsc.bcm.edu;bcgsc.ca	37	10	100904083	100904083	+	Silent	SNP	C	C	T	rs200038077		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HPSE2	NM_001166246	exon3	c.G522A	p.L174L	GAGCTCCAGCATA	.	62.0	4.0	69.0	0.0	C|0.999;T|0.001	91
HS1BP3	64342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20823705	20823705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HS1BP3	NM_022460	exon6	c.G871T	p.G291W	TGGGCCCTCCACT	.	103.0	33.0	84.0	0.0	.	91
HSDL2	84263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	115232768	115232768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HSDL2	NM_032303	exon11	c.A1201G	p.M401V	GGTAACATGGCCC	.	42.0	4.0	54.0	0.0	.	90
HSPA4L	22824	hgsc.bcm.edu;bcgsc.ca	37	4	128724944	128724944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HSPA4L	NM_014278	exon7	c.A824G	p.K275R	TAAAGAAGCTAAT	.	99.0	4.0	111.0	0.0	.	228
HYDIN	54768	hgsc.bcm.edu;bcgsc.ca	37	16	70884467	70884467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HYDIN	NM_001270974	exon74	c.A12535G	p.T4179A	TTAATGTCACAGG	.	212.0	38.0	149.0	0.0	.	92
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158988074	158988074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IFI16	NM_005531	exon5	c.A605T	p.K202I	TCCAAAAACGCCC	.	364.0	120.0	128.0	0.0	.	91
IFNA6	3443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21350645	21350645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IFNA6	NM_021002	exon1	c.A242C	p.H81P	ACCTCATGGAGGA	.	239.0	110.0	193.0	0.0	.	68
IL31RA	133396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55206415	55206415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IL31RA	NM_001242637	exon12	c.G1557T	p.K519N	ACGAAAGACCTCT	.	267.0	105.0	233.0	0.0	.	91
INSIG1	3638	hgsc.bcm.edu;bcgsc.ca	37	7	155090257	155090257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	INSIG1	NM_198337	exon2	c.A262G	p.S88G	CAGAGGAGCCTCG	.	77.0	4.0	59.0	0.0	.	90
IP6K3	117283	hgsc.bcm.edu;bcgsc.ca	37	6	33696059	33696059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IP6K3	NM_001142883	exon4	c.T218C	p.L73P	TTCCAGAGGTGCA	.	113.0	6.0	89.0	0.0	.	240
IRF1	3659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131825125	131825125	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IRF1	NM_002198	exon2	c.A46C	p.I16L	AATTAATCTGCAT	.	128.0	41.0	114.0	0.0	.	226
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52356813	52356813	+	Silent	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGA2	NM_002203	exon12	c.A1395T	p.I465I	CCAGATAGTGCTA	.	194.0	73.0	189.0	0.0	.	226
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	20438493	20438493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGB8	NM_002214	exon9	c.C1157A	p.S386X	TCATTTCAGAAGT	.	159.0	60.0	127.0	0.0	.	227
JMJD4	65094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	227922402	227922402	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	JMJD4	NM_023007	exon2	c.C516T	p.G172G	GGAGTAGCCCGCC	.	562.0	285.0	287.0	0.0	.	226
KAT6B	23522	hgsc.bcm.edu;bcgsc.ca	37	10	76741556	76741556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_012330	exon11	c.T2243C	p.L748P	CAAAGCTTTACCT	.	76.0	4.0	52.0	0.0	.	.
KDM4D	55693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	94732090	94732104	+	In_Frame_Del	DEL	CTGGGCCCCTGTGCC	CTGGGCCCCTGTGCC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CTGGGCCCCTGTGCC	CTGGGCCCCTGTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KDM4D	NM_018039	exon3	c.1554_1568del	p.518_523del	GTGCAGCTGGGCC	.	135.0	20.0	126.0	0.0	.	226
KIAA1210	57481	hgsc.bcm.edu;bcgsc.ca	37	X	118221124	118221124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIAA1210	NM_020721	exon11	c.A4069G	p.K1357E	TCTGCTTTACAGG	.	92.0	4.0	43.0	0.0	.	67
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32136525	32136525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_018169	exon4	c.C2636T	p.S879L	AGGAGTCAAGGAA	.	170.0	47.0	137.0	0.0	.	.
KIF2A	3796	hgsc.bcm.edu;bcgsc.ca	37	5	61659121	61659121	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIF2A	NM_001098511	exon13	c.A1236G	p.K412K	ACTGAAACTCATT	.	92.0	6.0	45.0	0.0	.	228
KRT17	3872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39778675	39778675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KRT17	NM_000422	exon3	c.G604T	p.A202S	GGTCGGCTCTGGC	.	608.0	224.0	438.0	0.0	.	92
KRTAP1-4	728255	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39186236	39186236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001257305	exon1	c.C95A	p.T32N	GAGCTGGTCTGGC	.	101.0	46.0	69.0	0.0	.	.
LACC1	144811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	44455558	44455558	+	Missense_Mutation	SNP	C	C	A	rs150202700		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001128303	exon2	c.C437A	p.S146Y	AACAGTCCATTGA	.	76.0	25.0	76.0	0.0	C|1.000;A|0.000	.
LOC642852	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46713386	46713386	+	RNA	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	AGGAGACGAGAGA	.	91.0	29.0	89.0	0.0	.	.
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141819744	141819744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRP1B	NM_018557	exon8	c.A1112C	p.Q371P	GCTGGCTGCTCTG	.	173.0	62.0	163.0	0.0	.	311
MCL1	4170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150551951	150551951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MCL1	NM_182763	exon1	c.C56T	p.A19V	AAGCCGGCCCCCC	.	138.0	33.0	82.0	0.0	.	227
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30679231	30679231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MDC1	NM_014641	exon7	c.C2179T	p.P727S	CTTGGGGTGGAGT	.	228.0	83.0	184.0	0.0	.	273
MFSD1	64747	hgsc.bcm.edu;bcgsc.ca	37	3	158527010	158527010	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MFSD1	NM_022736	exon6	c.T630C	p.A210A	ATATGCTGTGAGC	.	74.0	4.0	58.0	0.0	.	90
MITF	4286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69813025	69813025	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MITF	NM_006722	exon1	c.C33T	p.F11F	GGTTTTCCCACGA	.	94.0	37.0	81.0	0.0	.	524
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20414041	20414041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLLT3	NM_004529	exon5	c.A803G	p.N268S	AGTAAGTTACTAT	.	451.0	179.0	439.0	1.0	.	660
MME	4311	broad.mit.edu;bcgsc.ca	37	3	154861272	154861272	+	Missense_Mutation	SNP	G	G	C	rs201238171	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MME	NM_007287	exon13	c.G1229C	p.R410P	GGAGACGTTGTGC	.	150.0	7.0	204.0	1.0	.	516
MMP13	4322	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102826137	102826137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MMP13	NM_002427	exon2	c.G206A	p.R69Q	ATTTCTCGGAGCC	.	220.0	84.0	134.0	2.0	.	229
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31333805	31333805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MORC2	NM_014941	exon15	c.A1180G	p.I394V	TACCGATGGCAAT	.	228.0	110.0	140.0	0.0	.	92
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58979671	58979671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MPEG1	NM_001039396	exon1	c.C668T	p.A223V	AAGGAGGCCCTGA	.	49.0	21.0	44.0	0.0	.	70
MYLK2	85366	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30409394	30409394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYLK2	NM_033118	exon4	c.A626G	p.E209G	TGGGAGAGAAAAC	.	182.0	70.0	150.0	1.0	.	760
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16783454	16783454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO10	NM_012334	exon5	c.C592A	p.L198I	TTTCAAGAATAGC	.	105.0	20.0	54.0	0.0	.	3
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41941630	41941630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NAA16	NM_024561	exon14	c.A1595G	p.K532R	TGAGAAAGATGAC	.	91.0	4.0	74.0	0.0	.	90
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78513703	78513703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NAV3	NM_014903	exon15	c.A3727G	p.I1243V	CCAGATATTGCCT	.	200.0	75.0	155.0	0.0	.	279
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29576138	29576138	+	Splice_Site	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NF1	NM_000267	exon30	c.4110+1G>C	.	TACCAGGTATGCT	.	94.0	28.0	87.0	0.0	.	3353
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47916121	47916121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NFXL1	NM_152995	exon2	c.G100A	p.G34R	CTCCTCCGGCGCC	.	37.0	15.0	89.0	0.0	.	524
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44555505	44555505	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NPC1L1	NM_013389	exon19	c.G3774A	p.K1258K	CTGGGCCTTGGCG	.	93.0	38.0	68.0	0.0	.	94
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36342181	36342181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NPHS1	NM_004646	exon3	c.T380A	p.V127E	AGGATCACTCTGG	.	110.0	26.0	82.0	0.0	.	49
NYNRIN	57523	hgsc.bcm.edu;bcgsc.ca	37	14	24879219	24879219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NYNRIN	NM_025081	exon4	c.A2219C	p.Q740P	AGTTTCAGATGGA	.	138.0	8.0	98.0	0.0	.	3
OR4S2	219431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55418935	55418935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR4S2	NM_001004059	exon1	c.G556T	p.A186S	AAACTTGCCTGCA	.	301.0	114.0	235.0	0.0	.	71
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4944635	4944635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR51G1	NM_001005237	exon1	c.T935C	p.I312T	GACTTTATAAACT	.	117.0	16.0	113.0	0.0	.	70
P2RY12	64805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151055763	151055763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	P2RY12	NM_022788	exon3	c.G871T	p.A291S	GGCATGCATTTAA	.	66.0	46.0	111.0	0.0	.	501
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419294	122419294	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PARP14	NM_017554	exon6	c.T1893C	p.T631T	AAACACTGTAATC	.	77.0	4.0	85.0	0.0	.	525
PCMTD1	115294	hgsc.bcm.edu;bcgsc.ca	37	8	52746162	52746162	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PCMTD1	NM_052937	exon4	c.A498G	p.G166G	TCCAGCTCCACAA	.	74.0	4.0	84.0	0.0	.	68
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178545631	178545631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PDE11A	NM_016953	exon16	c.G2346T	p.E782D	TCTCCTCCTGCAG	.	24.0	10.0	38.0	0.0	.	93
PEAR1	375033	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156878092	156878092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PEAR1	NM_001080471	exon9	c.T1075C	p.C359R	CTCAGCTGCCAGG	.	123.0	18.0	61.0	1.0	.	71
PELP1	27043	hgsc.bcm.edu;bcgsc.ca	37	17	4585844	4585844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PELP1	NM_014389	exon5	c.A595G	p.M199V	CCTTCATTCCTTC	.	61.0	4.0	75.0	0.0	.	24
PIGN	23556	hgsc.bcm.edu;bcgsc.ca	37	18	59713126	59713126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PIGN	NM_176787	exon31	c.T2759C	p.L920P	AGTCTGAGTTTCT	.	94.0	5.0	77.0	0.0	.	227
PKD2	5311	hgsc.bcm.edu;bcgsc.ca	37	4	88940628	88940628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PKD2	NM_000297	exon2	c.T614C	p.L205P	CAAGACTCATGGA	.	61.0	4.0	44.0	0.0	.	91
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48565265	48565265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLA2G4C	NM_001159322	exon14	c.A1277G	p.D426G	AAAGGATCTCCGG	.	59.0	26.0	45.0	0.0	.	92
PLIN2	123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19116605	19116605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLIN2	NM_001122	exon8	c.C955G	p.Q319E	GCTGCTGAGTCAG	.	217.0	97.0	200.0	0.0	.	92
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6026652	6026652	+	Missense_Mutation	SNP	C	C	G	rs63750739	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PMS2	NM_000535	exon11	c.G1744C	p.E582Q	TTTCTTCTTTTTT	.	86.0	41.0	77.0	0.0	.	1083
PPIL4	85313	hgsc.bcm.edu;bcgsc.ca	37	6	149867088	149867088	+	Silent	SNP	G	G	A	rs200555722	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPIL4	NM_139126	exon1	c.C54T	p.T18T	TTCTTCGGTGTAC	.	49.0	4.0	86.0	0.0	G|0.997;C|0.003	90
PPP3CA	5530	hgsc.bcm.edu;bcgsc.ca	37	4	102030182	102030182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPP3CA	NM_000944	exon3	c.G313A	p.G105R	ATCCCCCGACTTC	.	86.0	4.0	76.0	0.0	.	227
PPP3CA	5530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	101982264	101982264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPP3CA	NM_000944	exon10	c.C1136T	p.S379L	TCTTCTGACCCTA	.	405.0	86.0	424.0	0.0	.	227
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	171510373	171510373	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_015172	exon16	c.C3762T	p.V1254V	AGTTGTCCCCAAA	.	431.0	29.0	157.0	0.0	.	.
PSMF1	9491	hgsc.bcm.edu;bcgsc.ca	37	20	1145055	1145055	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PSMF1	NM_006814	exon6	c.T699C	p.P233P	ACTTCCTCCAGGC	.	118.0	6.0	111.0	0.0	.	90
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71478142	71478142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PTGER3	NM_001126044	exon2	c.A923T	p.N308I	GTCTGATTGAAGA	.	99.0	35.0	65.0	0.0	.	660
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114380814	114380814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PTPN22	NM_015967	exon13	c.C1208T	p.P403L	ACTATTGGAAATG	.	124.0	45.0	126.0	0.0	.	227
RAB28	9364	hgsc.bcm.edu;bcgsc.ca	37	4	13462450	13462450	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RAB28	NM_004249	exon4	c.A264G	p.G88G	GAGGACTCCCTGT	.	104.0	5.0	63.0	0.0	.	228
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50103698	50103698	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RBM6	NM_005777	exon17	c.2706delC	p.I902fs	ACTGATCGGCCTC	.	53.0	16.0	44.0	0.0	.	280
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100029414	100029414	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	REV1	NM_016316	exon14	c.1952-1G>A	.	CAACTCCTAGGAA	.	117.0	46.0	120.0	0.0	.	92
RP1	6101	hgsc.bcm.edu;bcgsc.ca	37	8	55537397	55537397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RP1	NM_006269	exon4	c.A955G	p.I319V	GATGATATTGAGA	.	94.0	4.0	79.0	0.0	.	102
RPAP2	79871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92789250	92789250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RPAP2	NM_024813	exon8	c.C773G	p.S258C	CTAACTCCAAACA	.	149.0	73.0	125.0	0.0	.	91
SAMD12	401474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	119452108	119452108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SAMD12	NM_207506	exon3	c.G285C	p.Q95H	GTAGATCTGATAC	.	176.0	70.0	172.0	0.0	.	227
SCAMP5	192683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75310253	75310253	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCAMP5	NM_001178111	exon6	c.C336T	p.F112F	TACCTTCATGGCT	.	135.0	50.0	121.0	0.0	.	23
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83590840	83590840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SEMA3A	NM_006080	exon17	c.C2163A	p.F721L	TTCACAGAACTCA	.	549.0	109.0	238.0	0.0	.	156
SETD9	133383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	56205565	56205565	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_153706	exon1	c.C93T	p.N31N	CCACAACCCGAGG	.	132.0	52.0	131.0	0.0	.	.
SFPQ	6421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35656352	35656352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SFPQ	NM_005066	exon3	c.A1262C	p.K421T	GCTGGCTTAGAAG	.	155.0	57.0	137.0	0.0	.	231
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103701761	103701761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC10A2	NM_000452	exon5	c.A797G	p.N266S	TGCGTGTTCTGCA	.	187.0	70.0	143.0	0.0	.	94
SLC22A11	55867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64326710	64326710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC22A11	NM_018484	exon2	c.G497A	p.R166Q	CCTACCGGTGAGT	.	98.0	39.0	67.0	0.0	.	91
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	92953018	92953024	+	Frame_Shift_Del	DEL	TATCGGA	TATCGGA	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	TATCGGA	TATCGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC24A4	NM_153646	exon14	c.1431_1437del	p.477_479del	GACTATTATCGGA	.	242.0	38.0	226.0	0.0	.	93
SLC35D1	23169	hgsc.bcm.edu;bcgsc.ca	37	1	67512974	67512974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC35D1	NM_015139	exon7	c.T610C	p.Y204H	TTACGTATGCACC	.	75.0	4.0	61.0	0.0	.	90
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	333670	333670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC6A13	NM_016615	exon10	c.T1070C	p.L357P	AAAGCCAGGCCAG	.	176.0	63.0	152.0	0.0	.	90
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	477525	477525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC9A3	NM_004174	exon11	c.C1682A	p.S561Y	CTGGGGGAGCGGA	.	189.0	44.0	106.0	0.0	.	90
SMC3	9126	hgsc.bcm.edu;bcgsc.ca	37	10	112356255	112356255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SMC3	NM_005445	exon19	c.A2063G	p.E688G	AAGAAGAACTAGG	.	61.0	4.0	61.0	0.0	.	92
SNX25	83891	hgsc.bcm.edu;bcgsc.ca	37	4	186185597	186185597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SNX25	NM_031953	exon4	c.A245G	p.E82G	GACATGAAGAACA	.	60.0	4.0	104.0	0.0	.	273
SPOP	8405	hgsc.bcm.edu;bcgsc.ca	37	17	47684733	47684733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPOP	NM_001007228	exon8	c.A716G	p.N239S	ACTCGATTCTATG	.	67.0	4.0	81.0	0.0	.	660
SRP72	6731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	57340266	57340277	+	In_Frame_Del	DEL	ATCTCGTCCGAA	ATCTCGTCCGAA	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	ATCTCGTCCGAA	ATCTCGTCCGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SRP72	NM_006947	exon4	c.401_412del	p.134_138del	ATAGAGATCTCGT	.	126.0	20.0	126.0	0.0	.	116
SSBP1	6742	hgsc.bcm.edu;bcgsc.ca	37	7	141441987	141441987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SSBP1	NM_001256513	exon3	c.A43G	p.R15G	TTTGTAAGACATG	.	61.0	4.0	41.0	0.0	.	91
SST	6750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187388043	187388043	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SST	NM_001048	exon1	c.C37T	p.L13L	TGGACAGCGCAGC	.	108.0	50.0	131.0	0.0	.	91
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24582054	24582054	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SUSD2	NM_019601	exon9	c.G1410A	p.E470E	CGGAGAGTACGTG	.	220.0	52.0	136.0	0.0	.	91
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33405455	33405455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNGAP1	NM_006772	exon8	c.G773A	p.R258H	ACAGCCGCCGGGT	.	64.0	24.0	59.0	0.0	.	48
TAS2R7	50837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10954420	10954420	+	Silent	SNP	G	G	A	rs201086265	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAS2R7	NM_023919	exon1	c.C750T	p.S250S	GAGAAAGGACAAA	.	177.0	69.0	112.0	0.0	G|0.997;A|0.003	91
TBK1	29110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64889483	64889483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TBK1	NM_013254	exon15	c.G1648C	p.E550Q	AGTGTAGAAAAAC	.	109.0	50.0	58.0	0.0	.	1459
TCTEX1D1	200132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67241997	67241997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TCTEX1D1	NM_152665	exon4	c.C247G	p.H83D	GTCAATCATATTT	.	231.0	95.0	174.0	0.0	.	90
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	179564922	179564922	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TDRD5	NM_173533	exon4	c.C800G	p.S267X	AGACTTCAAGACT	.	259.0	42.0	102.0	0.0	.	94
THEM4	117145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151867506	151867506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	THEM4	NM_053055	exon2	c.A264C	p.Q88H	GAAGTCTTGAATC	.	241.0	11.0	97.0	0.0	.	522
TMEM181	57583	hgsc.bcm.edu;bcgsc.ca	37	6	159005001	159005001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM181	NM_020823	exon4	c.A595G	p.I199V	ATTCAAATACTTT	.	48.0	4.0	65.0	0.0	.	70
TMEM43	79188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14180787	14180787	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM43	NM_024334	exon11	c.C990T	p.L330L	GATCCTCTACACC	.	174.0	72.0	109.0	0.0	.	91
TNRC6A	27327	hgsc.bcm.edu;bcgsc.ca	37	16	24801289	24801289	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6A	NM_014494	exon6	c.A1326G	p.Q442Q	TGGTCAACCTCAA	.	83.0	4.0	72.0	0.0	.	92
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40660706	40660706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6B	NM_001162501	exon5	c.G472A	p.G158S	CTTGGAGGTGCTG	.	138.0	36.0	94.0	0.0	.	22
TONSL	4796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145659589	145659589	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TONSL	NM_013432	exon21	c.C3159T	p.A1053A	GTCCAGGGCCAGG	.	100.0	9.0	123.0	0.0	.	92
TSC1	7248	hgsc.bcm.edu;bcgsc.ca	37	9	135798881	135798881	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TSC1	NM_001162427	exon6	c.211-2A>G	.	TCCATCTGCAGGA	.	127.0	7.0	119.0	0.0	.	1906
TXN	7295	hgsc.bcm.edu;bcgsc.ca	37	9	113018699	113018699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TXN	NM_001244938	exon1	c.A17G	p.E6G	TTGCTCTCGATCT	.	65.0	6.0	52.0	0.0	.	90
TYW1	55253	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	66660199	66660199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TYW1	NM_018264	exon15	c.A1852T	p.M618L	CTTACCATGGCCC	.	227.0	77.0	179.0	1.0	.	91
UBLCP1	134510	hgsc.bcm.edu;bcgsc.ca	37	5	158705274	158705274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	UBLCP1	NM_145049	exon9	c.A713G	p.K238R	GGGGAAAGTTTTC	.	74.0	4.0	46.0	0.0	.	91
ULK2	9706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	19700945	19700945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ULK2	NM_001142610	exon18	c.A1573G	p.R525G	GCAGTCTAGCACC	.	33.0	4.0	42.0	0.0	.	334
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1377635	1377635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_020894	exon13	c.G1943A	p.G648D	GGAAAGGCAGGGG	.	48.0	24.0	64.0	0.0	.	.
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82835029	82835029	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VCAN	NM_004385	exon8	c.G6207A	p.T2069T	AGGTACGAAAGCT	.	91.0	36.0	66.0	0.0	.	238
VPS37A	137492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17132309	17132309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VPS37A	NM_152415	exon5	c.C484A	p.P162T	CCATATCCTCCAC	.	117.0	64.0	174.0	0.0	.	90
YY1	7528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100742844	100742844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	YY1	NM_003403	exon4	c.C921G	p.F307L	GATGTTCAGGGAT	.	105.0	27.0	85.0	0.0	.	226
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132334321	132334321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZCCHC10	NM_017665	exon4	c.A467G	p.D156G	CTGCTATCTGTGC	.	100.0	36.0	82.0	0.0	.	90
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	135545117	135545124	+	Frame_Shift_Del	DEL	CACGTTGG	CACGTTGG	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CACGTTGG	CACGTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFAT	NM_020863	exon12	c.3068_3075del	p.1023_1025del	GGTGCCCACGTTG	.	64.0	10.0	66.0	0.0	.	90
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77768488	77768488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFHX4	NM_024721	exon10	c.G9331A	p.G3111R	CTCCCCGGAATGA	.	69.0	5.0	66.0	0.0	.	98
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77616371	77616371	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFHX4	NM_024721	exon2	c.G48A	p.Q16Q	TGGGCAGAGCACA	.	144.0	63.0	126.0	0.0	.	98
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68220472	68220472	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFYVE26	NM_015346	exon39	c.A7140G	p.G2380G	TTTCCCTCCCAGC	.	77.0	4.0	61.0	0.0	.	162
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	123964092	123964092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZHX2	NM_014943	exon3	c.A342T	p.E114D	TGCAGAATGTAAC	.	75.0	21.0	43.0	0.0	.	227
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	147128512	147128526	+	In_Frame_Del	DEL	GCCGCGCATCACGGC	GCCGCGCATCACGGC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	GCCGCGCATCACGGC	GCCGCGCATCACGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZIC1	NM_003412	exon1	c.613_627del	p.205_209del	AACATGGCCGCGC	.	51.0	15.0	119.0	0.0	.	91
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20567643	20567643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZMYM2	NM_001190964	exon4	c.C431T	p.P144L	GACCTCCTGAGAC	.	113.0	43.0	91.0	0.0	.	685
ZNF208	7757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22157531	22157531	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF208	NM_007153	exon4	c.G305C	p.R102T	TCATACCTTCTCA	.	100.0	37.0	80.0	1.0	.	7
ZNF319	57567	hgsc.bcm.edu;bcgsc.ca	37	16	58031121	58031121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF319	NM_020807	exon2	c.T1049C	p.M350T	AAGCCCATGGGGC	.	75.0	5.0	88.0	0.0	.	90
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30793663	30793663	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001080417	exon3	c.C1986T	p.Y662Y	GCAGATGTAGGTC	.	56.0	18.0	58.0	0.0	.	.
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23938330	23938330	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_138286	exon2	c.G27T	p.V9V	TATGGCCACATCC	.	36.0	10.0	36.0	0.0	.	.
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	57175640	57175640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF835	NM_001005850	exon2	c.G927T	p.Q309H	GCAGTCCTGGCAC	.	21.0	12.0	16.0	0.0	.	72
ZSWIM4	65249	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13910558	13910558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZSWIM4	NM_023072	exon2	c.C178T	p.P60S	CGGGTGCCTGAGC	.	151.0	55.0	129.0	2.0	.	90
