Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	147109747	147109747	+	Splice_Site	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_024694	exon33	c.4537+1G>A	.	ACATTCGTAAGTA	.	53.0	22.0	51.0	0.0	.	.
ANKHD1	54882	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139917173	139917173	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ANKHD1	NM_017747	exon31	c.A7227T	p.S2409S	TGTGTCAGGTACA	.	130.0	37.0	121.0	1.0	.	185
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139889380	139889380	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ANKHD1	NM_017747	exon21	c.T3924C	p.C1308C	ATTTTGTGAACTC	.	165.0	56.0	104.0	0.0	.	185
APAF1	317	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99060130	99060130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	APAF1	NM_181868	exon9	c.C1357A	p.L453I	AGCCAGCTTCAGG	.	183.0	61.0	161.0	1.0	.	229
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29398965	29398965	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	APBA2	NM_005503	exon11	c.C1860T	p.S620S	CATGTCCATCAAT	.	121.0	40.0	101.0	0.0	.	90
ATXN1	6310	broad.mit.edu;mdanderson.org	37	6	16327891	16327891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ATXN1	NM_001128164	exon7	c.G651T	p.Q217H	CTGCTGCTGCTGC	.	58.0	6.0	71.0	0.0	.	93
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107510138	107510138	+	Missense_Mutation	SNP	C	C	T	rs138504832	alternate_allele	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	BBX	NM_001142568	exon15	c.C2345T	p.P782L	TTCACCCTACAGA	.	230.0	53.0	215.0	0.0	C|1.000;A|0.000	94
C9orf64	84267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86571114	86571114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	C9orf64	NM_032307	exon1	c.C302T	p.S101F	CACAGGGACCAGT	.	25.0	10.0	27.0	0.0	.	90
CACNG7	59284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54417766	54417766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CACNG7	NM_031896	exon2	c.G209T	p.G70V	AGAAAGGTCGCTG	.	127.0	31.0	140.0	0.0	.	91
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85971460	85971460	+	Silent	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CDHR1	NM_001171971	exon14	c.T1542A	p.T514T	TGGGACTGGGGCA	.	88.0	24.0	83.0	0.0	.	91
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	180062616	180062617	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CEP350	NM_014810	exon34	c.7376_7377insT	p.K2459fs	AACTCAAGTCCCC	.	325.0	154.0	252.0	0.0	.	26
COPG1	22820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128973580	128973580	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_016128	exon6	c.C393A	p.I131I	CCAGATCACTGAT	.	45.0	11.0	41.0	0.0	.	.
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47609480	47609481	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CYP4A22	NM_001010969	exon6	c.682_683insT	p.V228fs	AGCCTGGTTTTTT	.	156.0	47.0	189.0	0.0	.	139
DEPDC1	55635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	68944871	68944874	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	GTAA	GTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DEPDC1	NM_001114120	exon10	c.2065_2068del	p.689_690del	CAGTCTGTAAGTA	.	173.0	51.0	209.0	0.0	.	90
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24758722	24758722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DFNA5	NM_001127453	exon4	c.A520G	p.M174V	CCTGCATGTGCTC	.	27.0	15.0	51.0	0.0	.	91
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124414218	124414218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DNAH10	NM_207437	exon71	c.T12170C	p.M4057T	TCTGCATGGAAAT	.	111.0	38.0	114.0	1.0	.	95
DNAH12	201625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57454649	57454649	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DNAH12	NM_178504	exon17	c.A2163G	p.E721E	AAACTCTTCCACA	.	131.0	50.0	114.0	1.0	.	47
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	98164998	98164998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DPYD	NM_000110	exon6	c.C589T	p.P197S	TTGCAGGCCCAGC	.	162.0	51.0	145.0	0.0	.	278
EDIL3	10085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	83680126	83680126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EDIL3	NM_005711	exon1	c.G67A	p.G23S	CCTTACCTTTGCC	.	46.0	15.0	36.0	0.0	.	131
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143095957	143095957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EPHA1	NM_005232	exon6	c.C1073A	p.T358K	CCCCCCGTATCTG	.	47.0	23.0	32.0	0.0	.	1436
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143095959	143095959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EPHA1	NM_005232	exon6	c.T1071A	p.D357E	CCCCGTATCTGCT	.	46.0	22.0	32.0	0.0	.	1436
EXOSC3	51010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37784995	37784995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EXOSC3	NM_016042	exon1	c.G47A	p.R16K	CGCGCCCTGCTGC	.	42.0	18.0	63.0	1.0	.	135
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	66044982	66044982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EYS	NM_001142801	exon11	c.C1657A	p.L553I	AACATAGATACCG	.	143.0	53.0	140.0	0.0	.	660
FAM127C	441518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134156305	134156305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM127C	NM_001078173	exon1	c.C185T	p.A62V	TTCAGGGCGTCGT	.	160.0	54.0	137.0	0.0	.	62
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119345814	119345814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM184A	NM_024581	exon2	c.T324G	p.I108M	AACTTGAATCTTT	.	231.0	73.0	206.0	0.0	.	519
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149524	34149524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM47A	NM_203408	exon1	c.C872G	p.T291R	GGCTCTGTGGGTT	.	136.0	43.0	156.0	0.0	.	134
GPR157	80045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	9188904	9188904	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	GPR157	NM_024980	exon1	c.C183T	p.A61A	GGAGGCGGCCGAG	.	43.0	17.0	28.0	0.0	.	514
GPR87	53836	hgsc.bcm.edu;broad.mit.edu	37	3	151017871	151017871	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	GPR87	NM_023915	exon2	c.G18T	p.T6T	TGCAAGCGTCAAG	.	84.0	4.0	84.0	0.0	.	153
HAPLN2	60484	broad.mit.edu;mdanderson.org	37	1	156594411	156594411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HAPLN2	NM_021817	exon6	c.A575G	p.D192G	GTCTGGACTGGTG	.	55.0	8.0	29.0	0.0	.	90
HDC	3067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50534990	50534990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HDC	NM_002112	exon12	c.C1456T	p.R486W	CAACCCGAGGGCT	.	60.0	17.0	69.0	0.0	.	156
HS6ST3	266722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	97484795	97484795	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HS6ST3	NM_153456	exon2	c.C759T	p.S253S	CCTGAGCGAGTGG	.	89.0	27.0	87.0	0.0	.	92
HSPA5	3309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128001549	128001549	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HSPA5	NM_005347	exon5	c.T667G	p.F223V	GGTCAAACACCAG	.	90.0	48.0	101.0	1.0	.	230
ITGB3BP	23421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63974243	63974243	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ITGB3BP	NM_014288	exon3	c.6-2A>G	.	TAACACTACAAAC	.	311.0	99.0	256.0	0.0	.	90
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65482196	65482196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KAT5	NM_182710	exon7	c.G921T	p.K307N	TCTCAAGTGTCTT	.	162.0	53.0	162.0	0.0	.	90
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91522476	91522476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KIF20B	NM_016195	exon29	c.A4753G	p.I1585V	TTAGAGATTCAAT	.	64.0	15.0	73.0	0.0	.	93
L1CAM	3897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153136308	153136308	+	Missense_Mutation	SNP	C	C	A	rs202000092	alternate_allele	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	L1CAM	NM_000425	exon6	c.G631T	p.A211S	AGTGGGCGTGGCA	.	218.0	71.0	225.0	1.0	.	138
LAD1	3898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201351823	201351823	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LAD1	NM_005558	exon8	c.G1431A	p.L477L	GATCCACAGGTTG	.	53.0	16.0	55.0	0.0	.	90
LDB1	8861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103870721	103870721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LDB1	NM_001113407	exon5	c.A257G	p.D86G	AGATTGTCACACT	.	91.0	39.0	95.0	0.0	.	289
LHB	3972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49519808	49519808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LHB	NM_000894	exon2	c.C179A	p.T60N	ACCATGGTGGGGC	.	88.0	43.0	82.0	0.0	.	90
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99771771	99771771	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LPPR4	NM_014839	exon7	c.T1497C	p.N499N	TGGCAATCAGTAC	.	96.0	38.0	93.0	0.0	.	93
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	43655030	43655030	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MAOB	NM_000898	exon7	c.A724T	p.R242X	TTTCTCTTGTCTG	.	116.0	44.0	121.0	0.0	.	555
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	161470524	161470524	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MAP3K4	NM_006724	exon3	c.T1220G	p.L407X	AGAAATTAAGGAT	.	171.0	64.0	164.0	0.0	.	548
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99045370	99045370	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MATN2	NM_002380	exon17	c.T2682C	p.S894S	ACGGTCTACACAA	.	190.0	52.0	141.0	0.0	.	24
MIR320B2	100313769	ucsc.edu;mdanderson.org	37	1	224444769	224444769	+	RNA	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	.	CCCAGCTTTTCCC	.	537.0	141.0	379.0	2.0	.	.
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3249346	3249346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MRGPRE	NM_001039165	exon2	c.C684A	p.F228L	GCCGCAGAAGAGG	.	32.0	13.0	38.0	0.0	.	136
MRPS15	64960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36923570	36923570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MRPS15	NM_031280	exon6	c.C398G	p.S133C	TTGACAGACAAGG	.	121.0	35.0	104.0	0.0	.	91
MTMR8	55613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63548663	63548663	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MTMR8	NM_017677	exon12	c.C1470A	p.P490P	GTTGTAGGGCACA	.	35.0	12.0	26.0	0.0	.	195
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3227926	3227926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MXRA5	NM_015419	exon7	c.C8318T	p.S2773L	AGATGCGACTTAT	.	237.0	74.0	276.0	1.0	.	136
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26414368	26414368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MYO3A	NM_017433	exon19	c.G1945T	p.A649S	CAAGAAGCTCTCA	.	127.0	34.0	165.0	0.0	.	1007
MYOT	9499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	137219116	137219116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MYOT	NM_006790	exon7	c.G860T	p.G287V	TAAATGGAAGAAC	.	185.0	55.0	169.0	0.0	.	153
NEURL4	84461	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7230299	7230299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NEURL4	NM_001005408	exon4	c.G823C	p.V275L	TGCTCACCACCTC	.	28.0	6.0	56.0	0.0	.	46
NFE2L2	4780	hgsc.bcm.edu;bcgsc.ca	37	2	178098960	178098974	+	In_Frame_Del	DEL	CTATATCTTGCCTCC	CTATATCTTGCCTCC	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	CTATATCTTGCCTCC	CTATATCTTGCCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NFE2L2	NM_006164	exon2	c.71_85del	p.24_29del	CAAGATCTATATC	.	185.0	125.0	128.0	0.0	.	90
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173998534	173998534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NLGN1	NM_014932	exon7	c.C1913A	p.P638H	TCAGACCTACGAG	.	148.0	40.0	166.0	0.0	.	231
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2635458	2635458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NOP56	NM_006392	exon5	c.A434G	p.Q145R	AAGCACAGCTGGG	.	50.0	19.0	60.0	0.0	.	92
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117723945	117723945	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NOS1	NM_000620	exon6	c.G1254A	p.S418S	ACAGCGCGAGGCA	.	122.0	32.0	157.0	0.0	.	154
NXF2	56001	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	101615541	101615541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NXF2	NM_022053	exon23	c.C1862T	p.A621V	TTGAAGGCCTCCG	.	887.0	73.0	813.0	1.0	.	46
OCLN	100506658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68805338	68805338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OCLN	NM_001205254	exon3	c.A421T	p.M141L	GGCTTCATGTTGG	.	318.0	111.0	289.0	0.0	.	68
ODC1	4953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10581663	10581663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ODC1	NM_002539	exon11	c.A1213G	p.I405V	AGTAGATCGTCGG	.	140.0	98.0	118.0	0.0	.	69
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	97868346	97868346	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OR5H14	NM_001005514	exon1	c.C117A	p.I39I	CACCATCATGGGG	.	565.0	189.0	555.0	0.0	.	91
PALM3	342979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14167259	14167259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PALM3	NM_001145028	exon4	c.G336T	p.R112S	GCTGGGCCTGCCT	.	56.0	30.0	79.0	0.0	.	24
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140235699	140235699	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PCDHA10	NM_031859	exon1	c.C66T	p.A22A	CGCAGCCTGGGAG	.	76.0	52.0	64.0	0.0	.	99
PHF2	5253	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96415567	96415567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PHF2	NM_005392	exon6	c.T709G	p.C237G	AAGTACTGCCTAA	.	22.0	9.0	32.0	0.0	.	91
PIN4	5303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71417258	71417258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PIN4	NM_006223	exon4	c.C353A	p.P118Q	TGGGACCATTTCA	.	308.0	94.0	270.0	1.0	.	130
PLK1S1	55857	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21142904	21142904	+	RNA	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	.	TTTATCTGAAGGC	.	110.0	39.0	100.0	0.0	.	.
PPEF2	5470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76794280	76794280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PPEF2	NM_006239	exon12	c.G1506T	p.K502N	ACCCACCTTGCGG	.	92.0	21.0	76.0	0.0	.	228
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73431941	73431941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RAB6A	NM_002869	exon3	c.A133G	p.T45A	CAATTGTTGCCTG	.	118.0	31.0	113.0	0.0	.	227
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78685014	78685014	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ROBO1	NM_002941	exon23	c.T3282C	p.S1094S	CTCGCCAGAGTCC	.	178.0	60.0	178.0	0.0	.	67
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55539906	55539906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RP1	NM_006269	exon4	c.A3464G	p.N1155S	CTACCAACAAATC	.	244.0	58.0	196.0	0.0	.	102
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47098921	47098921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SETD2	NM_014159	exon15	c.C6353T	p.T2118I	TCCTCTGTAGAAA	.	96.0	24.0	98.0	0.0	.	1273
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63059095	63059095	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SLC22A10	NM_001039752	exon2	c.A486T	p.I162I	CATCATAGGTGGC	.	115.0	33.0	110.0	0.0	.	92
SORL1	6653	broad.mit.edu;bcgsc.ca	37	11	121440944	121440944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SORL1	NM_003105	exon23	c.A3302G	p.N1101S	TTGACAACGACTG	.	88.0	6.0	74.0	0.0	.	228
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42158099	42158099	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SPTBN5	NM_016642	exon39	c.G6720A	p.E2240E	CTTCACCTCCTGT	.	70.0	20.0	61.0	0.0	.	91
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183659598	183659598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_001080477	exon17	c.T3280C	p.W1094R	ACTCTGTGGGAAA	.	155.0	48.0	136.0	0.0	.	.
TFAP2A	7020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10398750	10398750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	TFAP2A	NM_003220	exon7	c.C1214A	p.A405D	TTGAGGGCCTCGG	.	151.0	60.0	150.0	0.0	.	91
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137814010	137814010	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	THSD7B	.	.	.	.	TGTACAGGAGACT	.	49.0	30.0	78.0	0.0	.	75
TNFRSF1A	7132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6443355	6443355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	TNFRSF1A	NM_001065	exon2	c.C95A	p.P32H	AGGTGAGGGACCA	.	116.0	43.0	117.0	0.0	.	659
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	66.0	32.0	121.0	1.0	.	70225
WDR36	134430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	110456277	110456277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	WDR36	NM_139281	exon18	c.C2156A	p.T719N	CTGGTACTTGTCA	.	104.0	26.0	92.0	0.0	.	92
ZBTB9	221504	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	33424110	33424110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZBTB9	NM_152735	exon2	c.T1233A	p.F411L	GCCTTTTGGCTGT	.	44.0	8.0	44.0	0.0	.	90
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138764382	138764382	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZC3HAV1	NM_024625	exon4	c.G1305T	p.V435V	TGTGGCCACTCCA	.	240.0	112.0	188.0	0.0	.	91
ZFX	7543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24229378	24229378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZFX	NM_003410	exon10	c.C2303A	p.S768Y	TTATTTCCATTCA	.	310.0	111.0	352.0	0.0	.	132
ZNF354B	117608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178310382	178310382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF354B	NM_058230	exon5	c.G929C	p.R310T	GTCGAAGGTCTGG	.	203.0	63.0	201.0	0.0	.	92
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9453375	9453375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF559	NM_001202406	exon6	c.A1440C	p.K480N	TGGGAAAGCCTTC	.	87.0	47.0	144.0	0.0	.	91
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49427419	49427420	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	p.G3690I	AGGGATCCAGCCC	.	52.0	14.0	58.0	0.0	.	.
