Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu	37	7	48559880	48559880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABCA13	NM_152701	exon53	c.C14041T	p.R4681X	CTTCTGCGATGGC	.	191.0	8.0	165.0	0.0	.	521
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67300830	67300830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABCA5	NM_018672	exon6	c.T910A	p.F304I	AAAGGAAAAAAAG	.	113.0	41.0	57.0	0.0	.	93
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40028400	40028400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ACLY	NM_001096	exon24	c.G2678A	p.C893Y	ATCAGACACATCT	.	112.0	21.0	113.0	0.0	.	228
ADAL	161823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43643144	43643144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ADAL	NM_001159280	exon11	c.T697C	p.C233R	GAACTCTGTTTGA	.	116.0	38.0	212.0	0.0	.	90
ADI1	55256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3502749	3502749	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ADI1	NM_018269	exon4	c.G525A	p.L175L	CTGTGCCAGAAAT	.	171.0	27.0	146.0	2.0	.	91
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414938	105414938	+	Missense_Mutation	SNP	C	C	T	rs112406618		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	AHNAK2	NM_138420	exon7	c.G6850A	p.V2284M	CCTCCACGCTGGG	.	446.0	57.0	227.0	0.0	C|0.500;T|0.500	47
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	4772487	4772487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	AJAP1	NM_018836	exon2	c.C557T	p.T186M	GGCCCACGGGGGA	.	40.0	13.0	52.0	0.0	.	515
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114274746	114274746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ANK2	NM_001148	exon38	c.G4972C	p.V1658L	CAGACAGTTCAAG	.	52.0	25.0	76.0	0.0	.	583
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131104271	131104271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ASAP1	NM_018482	exon25	c.C2520A	p.D840E	GGGAGGGTCGGAT	.	86.0	40.0	77.0	0.0	.	95
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	95228783	95228783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ASPN	NM_001193335	exon4	c.G458A	p.R153Q	AGCCTTCGCAACT	.	210.0	17.0	202.0	0.0	.	514
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160121863	160121863	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ATP1A4	NM_144699	exon1	c.T33G	p.A11A	AGTGGCTCCCCAT	.	31.0	14.0	38.0	0.0	.	94
BEND4	389206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42145862	42145862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	BEND4	NM_001159547	exon3	c.G637A	p.E213K	AGTGCTCCTGTCT	.	284.0	77.0	266.0	0.0	.	90
C10orf40	283025	ucsc.edu;mdanderson.org	37	10	61719363	61719363	+	RNA	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	.	GGTCAAGGGTTTA	.	337.0	75.0	424.0	0.0	.	.
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103609618	103609618	+	Missense_Mutation	SNP	G	G	A	rs199549255		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C10orf76	NM_024541	exon25	c.C1892T	p.T631M	GTGAGCGTGTCAT	.	92.0	40.0	115.0	0.0	G|1.000;A|0.000	90
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88128105	88128105	+	Missense_Mutation	SNP	C	C	A	rs140570931	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C6orf165	NM_001031743	exon7	c.C811A	p.Q271K	ATACGACAATATG	.	101.0	23.0	88.0	0.0	C|1.000;T|0.000	90
CABP5	56344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48543934	48543934	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CABP5	NM_019855	exon3	c.C166G	p.L56V	TCATGAGATTCCC	.	240.0	30.0	148.0	0.0	.	91
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	53845180	53845180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CACNA1D	NM_000720	exon49	c.C6293T	p.P2098L	GGGACCCAAAATT	.	203.0	13.0	196.0	0.0	.	100
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181700351	181700351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CACNA1E	NM_001205293	exon19	c.C2281A	p.P761T	TGGGAGCCACGCA	.	404.0	75.0	282.0	0.0	.	95
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7724692	7724692	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CAMTA1	NM_015215	exon9	c.G2085T	p.S695S	GACCTCGCAGGCG	.	113.0	79.0	114.0	0.0	.	520
CAPN6	827	hgsc.bcm.edu;bcgsc.ca	37	X	110497516	110497516	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CAPN6	NM_014289	exon3	c.281delA	p.E94fs	TGAGACTCCTGAA	.	88.0	74.0	123.0	0.0	.	195
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219874178	219874178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CCDC108	NM_194302	exon28	c.C4457T	p.S1486F	CTCACAGACACCT	.	91.0	36.0	120.0	0.0	.	94
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61687728	61687728	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CDH8	NM_001796	exon12	c.G2184C	p.R728S	ATGCAGCCTTACA	.	58.0	8.0	63.0	0.0	.	161
CFL2	1073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35182517	35182517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CFL2	NM_021914	exon2	c.A254G	p.Y85C	GCATCGTACAAAG	.	118.0	62.0	94.0	0.0	.	289
COG7	91949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23409377	23409377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	COG7	NM_153603	exon14	c.A1877G	p.Y626C	CTGATGTACTCGA	.	163.0	37.0	144.0	1.0	.	90
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113519031	113519031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CSMD3	NM_198123	exon29	c.C4784A	p.S1595Y	CCTGAAGATCCTG	.	85.0	31.0	80.0	0.0	.	1132
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57577636	57577636	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CTNND1	NM_001085458	exon16	c.G2491T	p.G831X	ATCTGGGGATATA	.	48.0	12.0	37.0	0.0	.	272
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57577637	57577637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CTNND1	NM_001085458	exon16	c.G2492T	p.G831V	TCTGGGGATATAA	.	48.0	12.0	37.0	0.0	.	272
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83128349	83128349	+	Silent	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYLC1	NM_021118	exon4	c.T633A	p.T211T	AAACACTGAATTC	.	64.0	28.0	84.0	0.0	.	112
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41387953	41387953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYP2A7	NM_000764	exon1	c.T163A	p.C55S	AGTCACATATGTG	.	290.0	131.0	264.0	0.0	.	93
CYP3A7	1551	ucsc.edu;bcgsc.ca	37	7	99314832	99314832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYP3A7	NM_000765	exon6	c.A489C	p.E163D	CTCTGCTTCCCGC	.	267.0	75.0	275.0	2.0	.	91
DEFB110	245913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49989618	49989618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DEFB110	NM_001037728	exon1	c.C31A	p.H11N	AAAAGTGCAGAAT	.	51.0	11.0	45.0	0.0	.	45
DIMT1	27292	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	61690415	61690415	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_014473	exon7	c.C466G	p.Q156E	CTCTTTGAAACAT	.	232.0	44.0	227.0	1.0	.	.
DNAJB1	3337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14629102	14629102	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DNAJB1	NM_006145	exon1	c.C60T	p.I20I	CCGCTTGATCTCC	.	28.0	20.0	26.0	0.0	.	650
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102988459	102988459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DYNC2H1	NM_001377	exon6	c.C866T	p.S289L	GTATTTCAATTTG	.	81.0	11.0	67.0	1.0	.	68
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158139190	158139190	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EBF1	NM_024007	exon14	c.C1521T	p.N507N	TGAGCCGTTGAGG	.	84.0	25.0	117.0	0.0	.	92
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184008634	184008634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ECE2	NM_014693	exon16	c.C2174A	p.A725D	CGCATGCCTTTGA	.	146.0	7.0	180.0	0.0	.	94
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60493468	60493468	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EFCAB3	NM_001144933	exon12	c.C1251T	p.D417D	GATGGACTCTAGA	.	190.0	44.0	107.0	0.0	.	227
EIF2B2	8892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	75471535	75471535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EIF2B2	NM_014239	exon4	c.T529G	p.F177V	GAGGCCTTCCTCA	.	89.0	21.0	48.0	0.0	.	91
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45939311	45939311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FBLN1	NM_006487	exon11	c.G1226A	p.R409H	CCGGGCGCCTGTG	.	50.0	24.0	35.0	0.0	.	515
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127705012	127705012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FBN2	NM_001999	exon16	c.G2111T	p.S704I	CAGGTACTGCGCA	.	48.0	17.0	66.0	0.0	.	146
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157771741	157771741	+	Missense_Mutation	SNP	C	C	T	rs200955967		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FCRL1	NM_001159397	exon5	c.G850A	p.A284T	GCTGGGCCCCCAG	.	306.0	35.0	159.0	0.0	C|0.999;T|0.000	153
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18154288	18154288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FLII	NM_002018	exon14	c.A1640G	p.Y547C	ATCCAGTAGTAGA	.	211.0	26.0	223.0	0.0	.	91
FOLR3	2352	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71847151	71847151	+	Silent	SNP	C	C	T	rs151190708		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	.	CGAGGACGAGCTG	.	377.0	102.0	302.0	0.0	C|0.979;T|0.021	.
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79398969	79398969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FRAS1	NM_025074	exon55	c.G7852A	p.V2618I	TGACAGGTCCAGT	.	207.0	110.0	199.0	0.0	.	68
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44975318	44975318	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FSCB	NM_032135	exon1	c.C873A	p.V291V	TACTTGGACATGG	.	41.0	5.0	45.0	0.0	.	587
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120602471	120602471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GCN1L1	NM_006836	exon17	c.G1667T	p.R556I	GTGAGTCTATGCG	.	175.0	13.0	193.0	0.0	.	94
GDF2	2658	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48413956	48413956	+	Silent	SNP	C	C	T	rs201627211		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GDF2	NM_016204	exon2	c.G912A	p.T304T	GCCATCCGTGTCC	.	104.0	21.0	142.0	2.0	C|0.999;T|0.001	229
GPR179	440435	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36485933	36485933	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GPR179	NM_001004334	exon11	c.C3519T	p.S1173S	TTCCCTGCTGCCC	.	182.0	42.0	151.0	1.0	.	93
GPRIN3	285513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90170573	90170573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GPRIN3	NM_198281	exon2	c.C689A	p.S230Y	ATTTCAGAGTCAC	.	62.0	20.0	60.0	0.0	.	71
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	18767353	18767353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HDAC9	NM_178425	exon12	c.C1882A	p.R628S	ATGGACCGCCCCC	.	284.0	18.0	205.0	0.0	.	227
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150680868	150680868	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HORMAD1	NM_032132	exon9	c.C411T	p.N137N	AGATTCGTTGCTT	.	170.0	21.0	147.0	0.0	.	92
HSPA12B	116835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3728929	3728929	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HSPA12B	NM_052970	exon8	c.G741A	p.S247S	CGCCTCGGTATAC	.	83.0	17.0	78.0	0.0	.	226
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37922298	37922298	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	IKZF3	NM_012481	exon8	c.C1275T	p.Y425Y	GAGTTCGTAAGAG	.	132.0	27.0	130.0	0.0	.	971
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61912532	61912532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	INCENP	NM_001040694	exon12	c.G1684A	p.D562N	GAGGAGGACAAGC	.	91.0	49.0	102.0	0.0	.	227
INHBE	83729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57849890	57849890	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	INHBE	NM_031479	exon2	c.C312T	p.A104A	TTCAGCCTACAGC	.	98.0	6.0	69.0	0.0	.	577
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31419146	31419146	+	Silent	SNP	G	G	A	rs141660381		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ITGAD	NM_005353	exon9	c.G918A	p.A306A	CTCAGCGCCTCCG	.	167.0	33.0	124.0	0.0	G|1.000;A|0.000	226
JAM3	83700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134014143	134014143	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	JAM3	NM_032801	exon4	c.G264C	p.L88F	AGACTTGGCGGGT	.	94.0	21.0	64.0	0.0	.	91
KLHDC3	116138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42986679	42986679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KLHDC3	NM_057161	exon8	c.G899T	p.G300V	TTGTTGGTGACAA	.	73.0	13.0	91.0	0.0	.	91
KLHL1	57626	broad.mit.edu;bcgsc.ca	37	13	70456494	70456494	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KLHL1	NM_020866	exon5	c.T1148G	p.V383G	TACTTGACCCACA	.	266.0	12.0	200.0	2.0	.	90
KLHL33	123103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20898551	20898551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001109997	exon2	c.G284A	p.R95H	TAGTGACGGGCTT	.	117.0	22.0	86.0	0.0	.	.
KRT8	3856	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	49.0	7.0	38.0	0.0	.	92
KRT8	3856	ucsc.edu;bcgsc.ca	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KRT8	NM_001256282	exon2	c.C151T	p.R51C	AGGAGCGGCTGCT	.	52.0	9.0	30.0	0.0	G|0.944;A|0.055	92
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63277947	63277947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LGALS12	NM_001142535	exon5	c.G574A	p.G192S	GTGGAGGGCAGCA	.	237.0	46.0	164.0	0.0	.	92
LILRA2	11027	ucsc.edu;bcgsc.ca	37	19	55086870	55086870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LILRA2	NM_001130917	exon5	c.G803T	p.G268V	GCCCTGGTTGGCA	.	257.0	57.0	192.0	2.0	.	91
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141128766	141128766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRP1B	NM_018557	exon70	c.T10857G	p.C3619W	ATCAGCACAATCA	.	271.0	36.0	211.0	0.0	.	311
LRP8	7804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53727880	53727880	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRP8	NM_017522	exon12	c.1388-1G>A	.	GCAGATCTTGGGA	.	152.0	44.0	152.0	1.0	.	90
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34687544	34687544	+	Silent	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LSM14A	NM_001114093	exon3	c.A291G	p.S97S	GTCCTCACTAGGC	.	137.0	63.0	166.0	0.0	.	91
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	48823123	48823123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LUC7L3	NM_006107	exon8	c.C736T	p.R246C	GATGAGCGTCTAA	.	73.0	13.0	58.0	0.0	.	90
MAG	4099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35800859	35800859	+	Silent	SNP	G	G	C	rs111518896	byfrequency;alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MAG	NM_080600	exon8	c.G1314C	p.P438P	CAACCCGGAGCCG	.	27.0	11.0	50.0	1.0	G|1.000;A|0.000	947
MAGEE2	139599	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	75003421	75003421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MAGEE2	NM_138703	exon1	c.G1466A	p.R489K	CGCTTTCTGTAGA	.	126.0	47.0	266.0	2.0	.	132
MEPE	56955	broad.mit.edu;bcgsc.ca	37	4	88766214	88766214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MEPE	NM_020203	exon4	c.T194C	p.V65A	ATATTGTCCAGGA	.	27.0	10.0	38.0	1.0	.	93
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141734140	141734140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MGAM	NM_004668	exon15	c.A1748C	p.H583P	ACATTCACAATCT	.	153.0	132.0	241.0	2.0	.	70
MSLN	10232	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	815541	815541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MSLN	NM_005823	exon10	c.G719T	p.W240L	CGACATGGTCTGT	.	40.0	4.0	78.0	0.0	.	91
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48601116	48601116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MYCBPAP	NM_032133	exon12	c.G1735A	p.V579I	CAGGACGTTTTTG	.	99.0	54.0	111.0	0.0	.	230
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12655884	12655884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MYOCD	NM_001146312	exon10	c.C1279A	p.P427T	GTCACACCCAACA	.	125.0	32.0	108.0	0.0	.	93
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204067444	204067444	+	Silent	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NBEAL1	NM_001114132	exon50	c.A7359T	p.G2453G	CTGTGGAATACAT	.	130.0	7.0	121.0	0.0	.	92
NDUFA13	51079	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19626948	19626948	+	Silent	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NDUFA13	.	.	.	.	CTTCCTAGCCGTG	.	184.0	88.0	176.0	0.0	.	650
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152466364	152466364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NEB	NM_001271208	exon81	c.G12289C	p.D4097H	TAATGTCGTTTTG	.	210.0	48.0	170.0	1.0	.	145
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101571988	101571988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NFKBIZ	NM_031419	exon5	c.T618G	p.N206K	TCTCAATGAACCC	.	88.0	36.0	88.0	0.0	.	92
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47801951	47801951	+	Missense_Mutation	SNP	T	T	C	rs62000434		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUP160	NM_015231	exon35	c.A4165G	p.I1389V	GATCAATAGAGGA	.	114.0	30.0	97.0	0.0	T|0.987;C|0.013	209
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154018769	154018769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUP210L	NM_001159484	exon26	c.C3560T	p.T1187I	ACCTTGGTAGCTG	.	209.0	9.0	146.0	0.0	.	77
OR5T1	390155	hgsc.bcm.edu;bcgsc.ca	37	11	56044023	56044051	+	Frame_Shift_Del	DEL	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TTTGCGGAACAAAGATGTAAAGGAGGCAA	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TTTGCGGAACAAAGATGTAAAGGAGGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OR5T1	NM_001004745	exon1	c.909_937del	p.303_313del	CTACAGTTTGCGG	.	100.0	4.0	160.0	0.0	.	71
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83999421	83999421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OSGIN1	NM_182981	exon6	c.G1243A	p.D415N	GCAGTGGATCCTG	.	223.0	49.0	252.0	0.0	.	68
PAPOLB	56903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4900131	4900131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PAPOLB	NM_020144	exon1	c.G1311A	p.M437I	CACCCACATTGTA	.	273.0	55.0	184.0	0.0	.	493
PDPR	55066	broad.mit.edu;mdanderson.org	37	16	70165260	70165260	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PDPR	NM_017990	exon8	c.C785G	p.A262G	TACATGCCTGCGA	.	96.0	16.0	119.0	0.0	.	135
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42932089	42932089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PEX6	NM_000287	exon17	c.A2927C	p.K976T	GCAAACTTGCGCT	.	104.0	42.0	122.0	0.0	.	91
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	145585532	145585532	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIAS3	NM_006099	exon14	c.T1797G	p.P599P	GGCCCCTGGGGGG	.	10.0	8.0	15.0	0.0	.	658
PIP4K2C	79837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57985226	57985226	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIP4K2C	NM_001146258	exon1	c.C154T	p.L52L	GTGTTCCTGTGGG	.	201.0	90.0	222.0	0.0	.	689
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22136992	22136992	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIWIL2	NM_001135721	exon2	c.T93G	p.A31A	ACAAGCTTCTAAA	.	117.0	52.0	113.0	0.0	.	91
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7417050	7417070	+	In_Frame_Del	DEL	CCCAGCTACAGCCCCAGCTCG	CCCAGCTACAGCCCCAGCTCG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CCCAGCTACAGCCCCAGCTCG	CCCAGCTACAGCCCCAGCTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	POLR2A	NM_000937	exon29	c.5467_5487del	p.1823_1829del	AGCTCACCCAGCT	.	128.0	37.0	208.0	0.0	.	91
POU4F1	5457	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	79175687	79175687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	POU4F1	NM_006237	exon2	c.G1123A	p.A375T	GCACGGCGAAGTA	.	29.0	5.0	66.0	0.0	.	515
PPCS	79717	hgsc.bcm.edu;broad.mit.edu	37	1	42922564	42922564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PPCS	NM_024664	exon1	c.C328T	p.P110S	TCGGGCCCAGCCC	.	46.0	4.0	72.0	0.0	.	90
PREX1	57580	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47249156	47249156	+	Missense_Mutation	SNP	A	A	G	rs200234810		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PREX1	NM_020820	exon34	c.T4289C	p.I1430T	CCCTCAATGTGGT	.	109.0	36.0	102.0	0.0	A|0.999;G|0.001	231
PRKCG	5582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54407908	54407908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PRKCG	NM_002739	exon16	c.A1676T	p.D559V	GGGAGGACGAGGA	.	148.0	16.0	119.0	1.0	.	1367
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48185171	48185171	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PTPRJ	NM_002843	exon23	c.3719+1G>T	.	TTGCAGGTACGCA	.	106.0	57.0	102.0	0.0	.	541
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38912788	38912788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RASGRP4	NM_001146206	exon2	c.C29T	p.S10F	TGGTGGGACTTCC	.	112.0	6.0	93.0	0.0	.	660
RBM12	10137	hgsc.bcm.edu;broad.mit.edu	37	20	34241969	34241969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RBM12	NM_001198840	exon2	c.C1276A	p.H426N	CCTCATGTGGTGA	.	77.0	4.0	75.0	0.0	.	93
RET	5979	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43615627	43615627	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RET	NM_020975	exon15	c.G2706A	p.E902E	TGAAGAGGATTCC	.	75.0	21.0	93.0	1.0	.	4507
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32756294	32756294	+	Missense_Mutation	SNP	C	C	A	rs143582852		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RFPL3	NM_001098535	exon2	c.C429A	p.D143E	TGACGACCTCAGG	.	348.0	81.0	288.0	0.0	C|1.000;A|0.000	91
RGPD4	285190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	108499260	108499260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RGPD4	NM_182588	exon22	c.C5197A	p.L1733I	AGACTTCTTCCTG	.	1025.0	200.0	937.0	0.0	.	2
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77656991	77656991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ROBO2	NM_002942	exon21	c.A3179C	p.K1060T	CTTCTAAACCACA	.	79.0	15.0	76.0	0.0	.	328
RPP25L	138716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	34610870	34610870	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_148179	exon2	c.C424G	p.L142V	AACCCAGGCCAGG	.	30.0	12.0	49.0	0.0	.	.
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101349498	101349498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RTL1	NM_001134888	exon1	c.C1628T	p.A543V	TCTAGGGCAATGC	.	189.0	36.0	161.0	0.0	.	46
SCN9A	6335	hgsc.bcm.edu;bcgsc.ca	37	2	167056365	167056366	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SCN9A	NM_002977	exon27	c.4750_4751del	p.1584_1584del	TCAGCTAGAAACA	.	126.0	51.0	98.0	0.0	.	181
SCUBE1	80274	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43654278	43654278	+	Missense_Mutation	SNP	G	G	T	rs73420094	byfrequency;alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SCUBE1	NM_173050	exon6	c.C674A	p.T225K	CCACACGTGGGGC	.	126.0	29.0	133.0	1.0	G|0.974;A|0.026	93
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	223682	223682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SDHA	NM_004168	exon2	c.C149T	p.S50F	CAGATTCCGTAAG	.	331.0	75.0	355.0	0.0	.	226
SDK1	221935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4008918	4008918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SDK1	NM_152744	exon11	c.C1576T	p.R526W	TCTGTCCGGATTC	.	185.0	68.0	145.0	1.0	.	138
SEMA3C	10512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80435065	80435065	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SEMA3C	NM_006379	exon7	c.T548A	p.L183H	GAGAAAAGCTCCT	.	51.0	8.0	31.0	0.0	.	515
SF1	7536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64537468	64537468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SF1	NM_001178030	exon5	c.A822C	p.E274D	GTTGATTTCTGGG	.	109.0	50.0	84.0	0.0	.	227
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	61186834	61186834	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SIX4	NM_017420	exon2	c.C1193G	p.S398X	ATGTTTGATGACA	.	160.0	31.0	143.0	0.0	.	154
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu	37	9	4583116	4583116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1272delT	p.S424fs	GCTGAGTGCCGTG	.	180.0	13.0	196.0	0.0	.	514
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	4583118	4583133	+	Frame_Shift_Del	DEL	CCGTGGGCCTGCCCGC	CCGTGGGCCTGCCCGC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CCGTGGGCCTGCCCGC	CCGTGGGCCTGCCCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1274_1289del	p.425_430del	TGAGTGCCGTGGG	.	168.0	13.0	198.0	0.0	.	514
SLC26A9	115019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205890933	205890933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC26A9	NM_134325	exon17	c.C1816T	p.P606S	TGGGGGGCGCATT	.	175.0	56.0	101.0	1.0	.	92
SLC30A10	55532	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220089062	220089067	+	In_Frame_Del	DEL	AAGTCC	AAGTCC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AAGTCC	AAGTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC30A10	NM_018713	exon4	c.1182_1187del	p.394_396del	AACAGTAAGTCCT	.	248.0	22.0	176.0	0.0	.	90
SLC6A9	6536	hgsc.bcm.edu;bcgsc.ca	37	1	44468280	44468280	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC6A9	NM_201649	exon7	c.G981A	p.L327L	AATGGTCAGCACC	.	113.0	5.0	143.0	0.0	.	90
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454076	84454076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLITRK1	NM_052910	exon1	c.C1567A	p.Q523K	CTATCTGGATGAT	.	142.0	29.0	96.0	0.0	.	94
ST6GALNAC1	55808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74625422	74625422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ST6GALNAC1	NM_018414	exon2	c.G503T	p.G168V	TGGCCCCCATTTC	.	439.0	32.0	269.0	0.0	.	90
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21821900	21821902	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SUPT16H	NM_007192	exon24	c.2880_2882del	p.960_961del	TCACTGTCCTCCT	.	248.0	39.0	213.0	0.0	.	90
TARBP1	6894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	234536930	234536930	+	Silent	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TARBP1	NM_005646	exon25	c.A4068T	p.L1356L	CACCTCTAGACAA	.	78.0	46.0	64.0	0.0	.	93
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	78380618	78380618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001098816	exon32	c.G6772A	p.D2258N	AGCCATCCTCATC	.	244.0	15.0	177.0	0.0	.	.
TFDP1	7027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114277525	114277525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TFDP1	NM_007111	exon4	c.C110T	p.S37F	ACCCCTCCACCGT	.	196.0	53.0	119.0	0.0	.	416
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35219383	35219383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TGIF2	NM_021809	exon3	c.C263T	p.P88L	AAGACCCTAATCA	.	97.0	47.0	86.0	0.0	.	92
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155504406	155504406	+	Missense_Mutation	SNP	G	G	T	rs76467763	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TIAM2	NM_012454	exon13	c.G2836T	p.G946W	TTAAATGGGGAAG	.	113.0	28.0	106.0	0.0	.	93
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	129559354	129559354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TMEM132D	NM_133448	exon9	c.G2366A	p.G789E	GCCGTTCCAACAG	.	323.0	25.0	371.0	0.0	.	106
TMEM181	57583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159029441	159029441	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TMEM181	NM_020823	exon9	c.C1161T	p.F387F	CATGTTCCTGTGC	.	315.0	141.0	366.0	0.0	.	70
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47384383	47384383	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TNS3	NM_022748	exon20	c.A2620T	p.S874C	CTGGGCTGCTCAG	.	68.0	32.0	49.0	0.0	.	94
TP53	7157	hgsc.bcm.edu;bcgsc.ca	37	17	7579380	7579380	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	TP53,NS,carcinoma,+2	TP53	NM_000546	exon4	c.307delT	p.Y103fs	CCTGGTAGGTTTT	.	86.0	73.0	153.0	2.0	.	70225
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72967815	72967815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPA1	NM_007332	exon12	c.G1385T	p.C462F	CTCTGACAGGTAT	.	345.0	74.0	320.0	0.0	.	230
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142625797	142625797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPV5	NM_019841	exon6	c.G751A	p.G251S	TGTTACCCTCCAC	.	95.0	12.0	153.0	0.0	.	177
UFD1L	7353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19463069	19463069	+	Silent	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	UFD1L	NM_005659	exon2	c.C60G	p.S20S	CTGTGTGGAGAAG	.	137.0	22.0	117.0	0.0	.	227
UFL1	23376	hgsc.bcm.edu;broad.mit.edu	37	6	96997391	96997391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_015323	exon14	c.G1624A	p.E542K	TTGCAAGAAGAAG	.	120.0	6.0	115.0	0.0	.	.
UGT1A4	54657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234628158	234628158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	UGT1A4	NM_007120	exon1	c.A692G	p.Y231C	CCCCTTATGCAAG	.	299.0	85.0	289.0	0.0	.	2
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	9000399	9000399	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	USP7	NM_003470	exon13	c.C1312T	p.Q438X	TTTTTTGCAAAAA	.	40.0	22.0	39.0	0.0	.	661
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184711798	184711798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	VPS8	NM_001009921	exon42	c.G3613C	p.G1205R	AAACTTGGAGAAA	.	113.0	5.0	160.0	0.0	.	91
VWA7	80737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31742377	31742377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_025258	exon5	c.G637A	p.E213K	ACTCCTCGCAATC	.	56.0	18.0	42.0	0.0	.	.
ZFYVE9	9372	hgsc.bcm.edu;bcgsc.ca	37	1	52761566	52761566	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZFYVE9	NM_007324	exon11	c.3074-1G>T	.	TCCATAGTTTATC	.	94.0	5.0	131.0	0.0	.	230
ZNF335	63925	broad.mit.edu;bcgsc.ca	37	20	44588920	44588920	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF335	NM_022095	exon14	c.C1947T	p.F649F	GCATTTGAAGGGC	.	180.0	10.0	173.0	1.0	.	94
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	88498400	88498400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001127464	exon2	c.T4438C	p.S1480P	GAAGTATCCCCGA	.	61.0	7.0	54.0	0.0	.	.
ZNF490	57474	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12692141	12692141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF490	NM_020714	exon5	c.T748A	p.Y250N	ATTCATAGGGTGT	.	63.0	20.0	75.0	1.0	.	90
ZNF584	201514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58929119	58929119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF584	NM_173548	exon4	c.G1234A	p.D412N	CAGGAGGACAGGG	.	249.0	33.0	168.0	2.0	.	90
ZNF705A	440077	broad.mit.edu;mdanderson.org	37	12	8329947	8329947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF705A	NM_001004328	exon5	c.G671A	p.G224E	ACACGGGAGAGAG	.	86.0	9.0	100.0	0.0	.	90
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	438107	438107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF721	NM_133474	exon3	c.G149T	p.W50L	CCTTTCCTTAATT	.	135.0	23.0	127.0	0.0	.	47
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58264871	58264871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF776	NM_173632	exon3	c.G373A	p.D125N	TTGGATGACGATG	.	106.0	20.0	84.0	0.0	.	91
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58265306	58265306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF776	NM_173632	exon3	c.G808A	p.D270N	CAATGTGATGAAT	.	82.0	10.0	68.0	0.0	.	91
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	68687250	68687251	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	p.I193F	TAACCGGATCCGA	.	54.0	4.0	78.0	0.0	.	.
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	61726908	61726909	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	p.E177I	AATACTTCTTCAC	.	125.0	6.0	113.0	0.0	.	.
