Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA1	19	ucsc.edu;bcgsc.ca	37	9	107576476	107576476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCA1	NM_005502	exon27	c.T3824C	p.F1275S	TCCCCGAAGGCCC	.	20.0	4.0	31.0	0.0	.	1016
ABCB10	23456	ucsc.edu;bcgsc.ca	37	1	229666102	229666102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCB10	NM_012089	exon8	c.G1489A	p.V497M	AATGCACGTTCTT	.	49.0	5.0	58.0	0.0	.	153
ABCD1	215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152991039	152991039	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCD1	NM_000033	exon1	c.C318T	p.F106F	CACCTTCCTGTCG	.	25.0	8.0	47.0	0.0	.	130
ACOX2	8309	ucsc.edu;bcgsc.ca	37	3	58494706	58494706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACOX2	NM_003500	exon14	c.T1897C	p.C633R	TTAAACACTGATC	.	41.0	4.0	50.0	0.0	.	90
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77328866	77328866	+	Missense_Mutation	SNP	T	T	C	rs74584252	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADAMTS18	NM_199355	exon19	c.A2960G	p.N987S	TGGCTGTTGCAGG	.	50.0	4.0	38.0	0.0	.	1036
AFG3L2	10939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	12329717	12329717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.2241delC	p.P747fs	TGGTCTGGGGCCC	.	86.0	31.0	90.0	0.0	.	90
AFG3L2	10939	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	12329714	12329714	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.A2244G	p.R748R	AAATGGTCTGGGG	.	84.0	36.0	91.0	0.0	.	90
AGMO	392636	ucsc.edu;bcgsc.ca	37	7	15433746	15433746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGMO	NM_001004320	exon6	c.T668C	p.V223A	TGATGAACCCTAT	.	39.0	4.0	46.0	0.0	.	69
AGPAT3	56894	ucsc.edu;bcgsc.ca	37	21	45397947	45397947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGPAT3	NM_001037553	exon7	c.T788C	p.I263T	AAGACATCCCGCT	.	34.0	4.0	46.0	0.0	.	90
AGPAT6	137964	ucsc.edu;bcgsc.ca	37	8	41469488	41469488	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGPAT6	NM_178819	exon6	c.A678G	p.T226T	GCTGACAGCCATC	.	41.0	4.0	41.0	0.0	.	90
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86123458	86123458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKAP13	NM_007200	exon7	c.A2159G	p.D720G	CCTCTGACCCTGT	.	48.0	5.0	47.0	0.0	.	258
AKNA	80709	ucsc.edu;bcgsc.ca	37	9	117113246	117113246	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKNA	NM_030767	exon15	c.C3114T	p.P1038P	CTTGTTGGGAAGG	.	34.0	4.0	67.0	0.0	.	94
AKNAD1	254268	ucsc.edu;bcgsc.ca	37	1	109363223	109363223	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKNAD1	NM_152763	exon14	c.T2193C	p.C731C	CTGAGAACAGATC	.	41.0	4.0	30.0	0.0	.	93
ALAS2	212	ucsc.edu;bcgsc.ca	37	X	55040038	55040038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALAS2	NM_000032	exon10	c.T1481C	p.L494P	TTGGAGAGCAGGA	.	65.0	5.0	64.0	0.0	.	131
ANKRD24	170961	ucsc.edu;bcgsc.ca	37	19	4224483	4224483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKRD24	NM_133475	exon22	c.T3422C	p.L1141P	AGAGACTCCAGGC	.	25.0	4.0	21.0	0.0	.	68
ANKRD45	339416	ucsc.edu;bcgsc.ca	37	1	173596300	173596300	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKRD45	NM_198493	exon5	c.497-2A>G	.	TGCATCTGAAAGA	.	33.0	4.0	33.0	0.0	.	90
APEH	327	ucsc.edu;bcgsc.ca	37	3	49713561	49713561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	APEH	NM_001640	exon6	c.A515G	p.K172R	GCCCCAAGGCCGA	.	25.0	4.0	41.0	0.0	.	91
ARAP1	116985	ucsc.edu;bcgsc.ca	37	11	72404496	72404496	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARAP1	NM_001040118	exon29	c.C3828A	p.T1276T	ATGCTTGGTGTCA	.	41.0	4.0	46.0	0.0	.	91
ARNTL	406	ucsc.edu;bcgsc.ca	37	11	13408275	13408275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARNTL	NM_001030272	exon19	c.A1850G	p.D617G	CTGTTGACTTTAG	.	62.0	6.0	50.0	0.0	.	90
ASXL1	171023	broad.mit.edu;bcgsc.ca	37	20	31019176	31019176	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASXL1	NM_015338	exon8	c.C771T	p.S257S	TGGGTCCATTCTT	.	77.0	6.0	41.0	0.0	.	2057
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52439874	52439874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BAP1	NM_004656	exon10	c.C838T	p.Q280X	GCAGCTGTGACTC	.	28.0	19.0	39.0	0.0	.	1032
C10orf129	142827	ucsc.edu;bcgsc.ca	37	10	96967135	96967135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C10orf129	NM_207321	exon4	c.A574G	p.S192G	GATAAGAGCTATG	.	37.0	4.0	40.0	0.0	.	90
C11orf30	56946	ucsc.edu;bcgsc.ca	37	11	76224573	76224573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C11orf30	NM_020193	exon10	c.C1507A	p.P503T	ACCACTCCTACTG	.	43.0	4.0	74.0	0.0	.	232
C17orf77	146723	ucsc.edu;bcgsc.ca	37	17	72588235	72588235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C17orf77	NM_152460	exon3	c.A50G	p.N17S	CTGAGAACAGAGC	.	48.0	4.0	44.0	0.0	.	90
C1orf51	148523	ucsc.edu;bcgsc.ca	37	1	150256042	150256042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1orf51	NM_144697	exon1	c.A365G	p.K122R	CCCAGAAGGTAAG	.	44.0	4.0	49.0	0.0	.	90
C1QBP	708	ucsc.edu;bcgsc.ca	37	17	5336345	5336345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1QBP	NM_001212	exon6	c.A839T	p.K280M	TGGCTCTTGACAA	.	44.0	5.0	60.0	0.0	.	91
CACNA2D2	9254	ucsc.edu;bcgsc.ca	37	3	50421651	50421651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA2D2	NM_001174051	exon6	c.A628G	p.I210V	TAGGGATCTGTAC	.	50.0	5.0	95.0	0.0	.	278
CADM1	23705	ucsc.edu;bcgsc.ca	37	11	115099884	115099884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CADM1	NM_014333	exon5	c.C670A	p.H224N	CAGGGTGCTCCAC	.	38.0	4.0	34.0	0.0	.	92
CASP1	834	ucsc.edu;bcgsc.ca	37	11	104897623	104897623	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CASP1	NM_001257118	exon8	c.T1062C	p.I354I	ATGTTCAATGAGT	.	42.0	5.0	31.0	0.0	.	661
CCDC109B	55013	ucsc.edu;bcgsc.ca	37	4	110581513	110581513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC109B	NM_017918	exon3	c.T338C	p.F113S	CCATCTTCACAGC	.	41.0	4.0	58.0	0.0	.	90
CCDC120	90060	ucsc.edu;bcgsc.ca	37	X	48919845	48919845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC120	NM_001163321	exon3	c.T143C	p.F48S	CTACCTTCAATGC	.	34.0	4.0	46.0	0.0	.	131
CCDC136	64753	ucsc.edu;bcgsc.ca	37	7	128454946	128454946	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC136	NM_022742	exon15	c.T3018C	p.T1006T	GGATACTTCTGAG	.	41.0	4.0	32.0	0.0	.	24
CD96	10225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111319663	111319663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD96	NM_198196	exon8	c.C1037G	p.A346G	AACCAGCCCAATC	.	64.0	35.0	79.0	0.0	.	93
CDC40	51362	ucsc.edu;bcgsc.ca	37	6	110551184	110551184	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDC40	NM_015891	exon15	c.A1590G	p.G530G	AAATGGAAAATTA	.	43.0	4.0	77.0	0.0	.	90
CDH2	1000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	25591881	25591881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDH2	NM_001792	exon4	c.A475G	p.R159G	AGTCTCTCTTCTG	.	88.0	33.0	81.0	1.0	.	525
CDK12	51755	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37619236	37619236	+	Silent	SNP	C	C	G	rs56403491	byfrequency	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDK12	NM_016507	exon1	c.C912G	p.P304P	CAGTCCCTATAGC	.	37.0	19.0	54.0	0.0	C|0.998;G|0.002	1055
CDK17	5128	ucsc.edu;bcgsc.ca	37	12	96707197	96707197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDK17	NM_001170464	exon4	c.G319A	p.G107S	TCTCACCATCTGA	.	28.0	4.0	24.0	0.0	.	550
CHD6	84181	ucsc.edu;bcgsc.ca	37	20	40052166	40052166	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHD6	NM_032221	exon30	c.G4521A	p.R1507R	GACATTCCGGCAC	.	44.0	4.0	52.0	0.0	.	238
CNOT1	23019	ucsc.edu;bcgsc.ca	37	16	58612823	58612823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNOT1	NM_206999	exon13	c.A1364G	p.E455G	AGAGATTCAATCA	.	39.0	4.0	53.0	0.0	.	95
COL8A1	1295	ucsc.edu;bcgsc.ca	37	3	99514406	99514406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL8A1	NM_001850	exon5	c.G1661T	p.G554V	CTCAAGGCCAGCC	.	24.0	4.0	31.0	0.0	.	90
CPNE9	151835	ucsc.edu;bcgsc.ca	37	3	9756640	9756640	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPNE9	NM_153635	exon10	c.692+1G>A	.	TGGAAGGTAGAAC	.	44.0	4.0	49.0	0.0	.	70
CPXM2	119587	ucsc.edu;bcgsc.ca	37	10	125601903	125601903	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPXM2	NM_198148	exon4	c.C615T	p.F205F	ACCAGTGAATCTG	.	45.0	4.0	51.0	0.0	.	92
CRB1	23418	ucsc.edu;bcgsc.ca	37	1	197390976	197390976	+	Missense_Mutation	SNP	A	A	G	rs145956521		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CRB1	NM_001257966	exon6	c.A2018G	p.K673R	TGAGAAAGGATTG	.	32.0	4.0	33.0	0.0	A|1.000;G|0.000	161
CST6	1474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65780325	65780325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CST6	NM_001323	exon2	c.C269A	p.T90K	TCCTGACGATGGA	.	35.0	25.0	53.0	0.0	.	523
CUL7	9820	ucsc.edu;bcgsc.ca	37	6	43016296	43016296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL7	NM_001168370	exon8	c.C2089A	p.P697T	GAGATGGGGGTTC	.	39.0	4.0	50.0	0.0	.	229
CUL9	23113	ucsc.edu;bcgsc.ca	37	6	43174080	43174080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL9	NM_015089	exon26	c.G5044T	p.A1682S	GAGGAAGCTGAGA	.	34.0	4.0	24.0	0.0	.	529
CXCL16	58191	ucsc.edu;bcgsc.ca	37	17	4642567	4642567	+	Missense_Mutation	SNP	A	A	G	rs143565057		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CXCL16	NM_022059	exon1	c.T125C	p.L42P	TGAGTCAGGTACA	.	43.0	5.0	59.0	0.0	A|1.000;G|0.000	226
CYBA	1535	ucsc.edu;bcgsc.ca	37	16	88713203	88713203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYBA	NM_000101	exon4	c.T247C	p.F83L	TGGTAAAGGGCCC	.	16.0	4.0	21.0	0.0	.	90
CYP4Z1	199974	ucsc.edu;bcgsc.ca	37	1	47533245	47533245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYP4Z1	NM_178134	exon1	c.A83G	p.Q28R	TGTTTCAGGTAAT	.	52.0	4.0	51.0	0.0	.	91
DCK	1633	ucsc.edu;bcgsc.ca	37	4	71888086	71888086	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCK	NM_000788	exon3	c.A210G	p.E70E	ATAGGAACTTACA	.	39.0	4.0	63.0	0.0	.	116
DCX	1641	ucsc.edu;bcgsc.ca	37	X	110644538	110644538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCX	NM_000555	exon3	c.T628C	p.S210P	TGTCTGAGGAACA	.	52.0	5.0	44.0	0.0	.	554
DNHD1	144132	ucsc.edu;bcgsc.ca	37	11	6579218	6579218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNHD1	NM_144666	exon25	c.A8693G	p.H2898R	GGCGCCACACTGC	.	53.0	4.0	58.0	0.0	.	24
DOCK3	1795	ucsc.edu;bcgsc.ca	37	3	51395251	51395251	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DOCK3	NM_004947	exon45	c.C4746A	p.L1582L	CCAGCTCAAGGAG	.	34.0	4.0	36.0	0.0	.	22
EIF3M	10480	ucsc.edu;bcgsc.ca	37	11	32610277	32610277	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF3M	NM_006360	exon3	c.T313C	p.L105L	CTGCAGTTGTAAG	.	40.0	4.0	51.0	0.0	.	155
EPHA7	2045	ucsc.edu;bcgsc.ca	37	6	93973601	93973601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHA7	NM_004440	exon9	c.G1775A	p.G592D	TCATCGCCTTCTT	.	14.0	4.0	21.0	0.0	.	1453
EPHB2	2048	ucsc.edu;bcgsc.ca	37	1	23232519	23232519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHB2	NM_004442	exon10	c.A1808T	p.Y603F	TCACCTACGAGGA	.	41.0	4.0	43.0	0.0	.	1381
EPHB2	2048	ucsc.edu;bcgsc.ca	37	1	23234452	23234452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHB2	NM_004442	exon12	c.G2146A	p.D716N	CAAAACGATGGGC	.	43.0	4.0	61.0	0.0	.	1381
EPS8L3	79574	ucsc.edu;bcgsc.ca	37	1	110301155	110301155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPS8L3	NM_139053	exon7	c.C595A	p.L199I	GCTCTAGGGTCCT	.	48.0	4.0	48.0	0.0	.	93
EVC2	132884	ucsc.edu;bcgsc.ca	37	4	5620323	5620323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EVC2	NM_147127	exon15	c.A2588G	p.D863G	CTCCTGTCCATCT	.	38.0	4.0	52.0	0.0	.	155
EXOG	9941	ucsc.edu;bcgsc.ca	37	3	38565778	38565778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EXOG	NM_005107	exon6	c.G1032T	p.M344I	CTTTATGAGTCGC	.	47.0	4.0	59.0	0.0	.	90
FAM160B1	57700	ucsc.edu;bcgsc.ca	37	10	116593104	116593104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM160B1	NM_020940	exon3	c.G237A	p.M79I	ATGTATGGAATAT	.	41.0	4.0	50.0	0.0	.	91
FAM3A	60343	ucsc.edu;bcgsc.ca	37	X	153735768	153735768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM3A	NM_001171132	exon8	c.T439C	p.F147L	CCACGAACACCAG	.	26.0	4.0	50.0	0.0	.	130
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149594	34149594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM47A	NM_203408	exon1	c.G802T	p.D268Y	CAGAATCCAGTTT	.	102.0	56.0	66.0	0.0	.	134
FAM63A	55793	ucsc.edu;bcgsc.ca	37	1	150975098	150975098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM63A	NM_001163258	exon3	c.T140C	p.L47S	ATGGTCAAAAGGG	.	33.0	4.0	31.0	0.0	.	91
FARP1	10160	ucsc.edu;bcgsc.ca	37	13	98896771	98896771	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FARP1	NM_001001715	exon3	c.A198G	p.K66K	CCTCAAAGCCACC	.	39.0	4.0	32.0	0.0	.	290
FARP1	10160	ucsc.edu;bcgsc.ca	37	13	99091413	99091413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FARP1	NM_005766	exon21	c.T2396C	p.F799S	ATCAGTTTAAAGT	.	31.0	4.0	56.0	0.0	.	290
FBXL14	144699	ucsc.edu;bcgsc.ca	37	12	1702850	1702850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FBXL14	NM_152441	exon1	c.A383G	p.K128R	ATCTGCTTGCAGA	.	53.0	5.0	67.0	0.0	.	227
FGF3	2248	ucsc.edu;bcgsc.ca	37	11	69631167	69631167	+	Missense_Mutation	SNP	T	T	C	rs146864055		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGF3	NM_005247	exon2	c.A245G	p.E82G	CCCACCTCCACTG	.	43.0	4.0	66.0	0.0	.	847
FGR	2268	ucsc.edu;bcgsc.ca	37	1	27942344	27942344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGR	NM_001042729	exon8	c.G694A	p.G232R	ACAGCCCGTCATT	.	48.0	4.0	59.0	0.0	.	547
FIBCD1	84929	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133787241	133787241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FIBCD1	NM_001145106	exon6	c.T884C	p.F295S	CGGAAGAAGTTCA	.	24.0	11.0	38.0	0.0	.	90
FLT1	2321	ucsc.edu;bcgsc.ca	37	13	28896449	28896449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FLT1	NM_002019	exon22	c.T3001C	p.S1001P	TGTAAGAAATCAG	.	35.0	4.0	42.0	0.0	.	1406
FOXK1	221937	ucsc.edu;bcgsc.ca	37	7	4798690	4798690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FOXK1	NM_001037165	exon6	c.C1253T	p.P418L	GCGCTCCAGCTTC	.	33.0	4.0	38.0	0.0	.	516
GABBR1	2550	ucsc.edu;bcgsc.ca	37	6	29576390	29576390	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABBR1	NM_001470	exon16	c.T1980C	p.P660P	GACGAAAGGAAAC	.	39.0	4.0	41.0	0.0	.	521
GBP4	115361	ucsc.edu;bcgsc.ca	37	1	89664501	89664501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GBP4	NM_052941	exon1	c.T17C	p.L6P	GCGTGAAGAGTTC	.	36.0	4.0	25.0	0.0	.	90
GPRASP1	9737	ucsc.edu;bcgsc.ca	37	X	101911002	101911002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPRASP1	NM_001099411	exon3	c.G2161T	p.G721W	ATTATAGGGTCCT	.	35.0	5.0	41.0	0.0	.	131
GRAMD1B	57476	ucsc.edu;bcgsc.ca	37	11	123448232	123448232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRAMD1B	NM_020716	exon2	c.G181T	p.V61L	CAGGGCGTGCAGC	.	42.0	4.0	62.0	0.0	.	69
GTF3C4	9329	ucsc.edu;bcgsc.ca	37	9	135553517	135553517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GTF3C4	NM_012204	exon2	c.C511A	p.P171T	TGGTCTCCCATGG	.	31.0	4.0	34.0	0.0	.	91
HAPLN2	60484	ucsc.edu;bcgsc.ca	37	1	156593366	156593366	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HAPLN2	NM_021817	exon3	c.A84G	p.P28P	AGACCCAGGTAAG	.	40.0	4.0	35.0	0.0	.	90
HIP1R	9026	ucsc.edu;bcgsc.ca	37	12	123339461	123339461	+	Missense_Mutation	SNP	C	C	T	rs191719039	by1000genomes	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIP1R	NM_003959	exon9	c.C728T	p.A243V	TCCCTGCGGACAC	.	51.0	4.0	44.0	0.0	C|0.994;T|0.006	91
HIVEP1	3096	ucsc.edu;bcgsc.ca	37	6	12124295	12124295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIVEP1	NM_002114	exon4	c.G4267A	p.E1423K	CTCTTAGAAAGAA	.	30.0	4.0	38.0	0.0	.	139
HNRNPL	3191	ucsc.edu;bcgsc.ca	37	19	39329657	39329657	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HNRNPL	NM_001533	exon10	c.1234-2A>G	.	TTCACCTTGGGGA	.	35.0	4.0	28.0	0.0	.	22
HTR4	3360	ucsc.edu;bcgsc.ca	37	5	147889387	147889387	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HTR4	NM_001040169	exon5	c.C708A	p.S236S	GCTCTCGGAGGAG	.	43.0	4.0	45.0	0.0	.	91
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90631837	90631837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	IDH2,brain,glioma,-1	IDH2	NM_002168	exon4	c.G516C	p.R172S	GGCGTGCCTGCCA	.	96.0	40.0	132.0	0.0	.	15118
IGSF9B	22997	ucsc.edu;bcgsc.ca	37	11	133801031	133801031	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IGSF9B	NM_014987	exon12	c.1369-2A>G	.	CCTACCTTGGTGA	.	43.0	4.0	69.0	0.0	.	68
IKBKAP	8518	ucsc.edu;bcgsc.ca	37	9	111665218	111665218	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IKBKAP	NM_003640	exon16	c.A1755G	p.S585S	AGAAGGTGACTCT	.	30.0	4.0	35.0	0.0	.	318
IKBKE	9641	ucsc.edu;bcgsc.ca	37	1	206647814	206647814	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IKBKE	NM_001193322	exon4	c.G228T	p.T76T	GGAGACGGTAGGT	.	38.0	4.0	31.0	0.0	.	1061
IMPDH2	3615	ucsc.edu;bcgsc.ca	37	3	49064263	49064263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	IMPDH2,NS,carcinoma,0	IMPDH2	NM_000884	exon7	c.G676T	p.D226Y	TCAGGTCTGTCCG	.	55.0	5.0	52.0	0.0	.	227
INTU	27152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128590302	128590302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	INTU	NM_015693	exon5	c.G1084A	p.V362I	ACACAAGTTACTA	.	44.0	8.0	50.0	0.0	.	91
ITGA7	3679	ucsc.edu;bcgsc.ca	37	12	56086982	56086982	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	ITGA7,NS,carcinoma,0	ITGA7	NM_001144996	exon20	c.C2667A	p.G889G	CTGCCCGCCCTCC	.	40.0	4.0	28.0	0.0	.	229
IVNS1ABP	10625	ucsc.edu;bcgsc.ca	37	1	185274729	185274729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IVNS1ABP	NM_006469	exon8	c.A704G	p.N235S	AGTAGGTTCCCAT	.	28.0	4.0	25.0	0.0	.	94
KAT6A	7994	ucsc.edu;bcgsc.ca	37	8	41812874	41812874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001099412	exon10	c.A1538G	p.E513G	CCAAACTCAATGA	.	49.0	4.0	52.0	0.0	.	.
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48614552	48614552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA0146	NM_001080394	exon14	c.C1952G	p.A651G	TCTATGCCACGGT	.	126.0	59.0	121.0	0.0	.	68
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123238013	123238013	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1109	NM_015312	exon60	c.C10666T	p.L3556L	GATGATCTGAAGT	.	77.0	16.0	129.0	0.0	.	80
KIAA1210	57481	ucsc.edu;bcgsc.ca	37	X	118230610	118230610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1210	NM_020721	exon8	c.G1113T	p.L371F	TGCAGTCAAGGAC	.	60.0	5.0	64.0	0.0	.	67
KIAA1644	85352	ucsc.edu;bcgsc.ca	37	22	44692666	44692666	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1644	NM_001099294	exon3	c.T167A	p.F56Y	AGGATGAAGGTCT	.	49.0	4.0	73.0	0.0	.	23
KIF14	9928	ucsc.edu;bcgsc.ca	37	1	200544760	200544760	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF14	NM_014875	exon22	c.C3525A	p.P1175P	AATGTCGGGTTCC	.	33.0	4.0	26.0	0.0	.	140
KIF15	56992	ucsc.edu;bcgsc.ca	37	3	44884683	44884683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF15	NM_020242	exon30	c.C3652A	p.L1218M	TGGCTCCTGCAAG	.	39.0	4.0	52.0	0.0	.	91
KIF16B	55614	ucsc.edu;bcgsc.ca	37	20	16360076	16360076	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF16B	NM_001199865	exon19	c.A2571G	p.E857E	CTCCTGTTCTTCT	.	49.0	5.0	31.0	0.0	.	291
KNTC1	9735	broad.mit.edu;bcgsc.ca	37	12	123060387	123060387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KNTC1	NM_014708	exon29	c.A2527G	p.K843E	GAGATGAAAAAAC	.	155.0	7.0	201.0	0.0	.	543
KRT85	3891	ucsc.edu;bcgsc.ca	37	12	52758150	52758150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KRT85	NM_002283	exon3	c.G630T	p.K210N	TTCATACCTGGGT	.	42.0	6.0	32.0	0.0	.	91
LAMB4	22798	ucsc.edu;bcgsc.ca	37	7	107696361	107696361	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LAMB4	NM_007356	exon25	c.A3471G	p.R1157R	ATCACATCTCTGG	.	53.0	6.0	65.0	0.0	.	140
LAMC3	10319	ucsc.edu;bcgsc.ca	37	9	133963173	133963173	+	Silent	SNP	C	C	A	rs200452667	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LAMC3	NM_006059	exon27	c.C4446A	p.I1482I	GGACATCGAGACC	.	26.0	4.0	27.0	0.0	C|0.999;T|0.001	93
LDB3	11155	ucsc.edu;bcgsc.ca	37	10	88478562	88478562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LDB3	NM_001171610	exon12	c.A1951G	p.S651G	GGGAACAGCCTCT	.	30.0	4.0	44.0	0.0	.	92
LGR6	59352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202287962	202287962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LGR6	NM_001017403	exon18	c.G2531A	p.R844H	GGCCCCGCGCAGG	.	39.0	13.0	47.0	0.0	.	160
LIPA	3988	ucsc.edu;bcgsc.ca	37	10	90988121	90988121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LIPA	NM_000235	exon4	c.G264T	p.L88F	TGCCAGCAAGCCA	.	40.0	4.0	42.0	0.0	.	90
LPHN2	23266	ucsc.edu;bcgsc.ca	37	1	82417786	82417786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LPHN2	NM_012302	exon8	c.A1742G	p.K581R	AACTGAAACCTAG	.	63.0	5.0	53.0	0.0	.	525
LPIN2	9663	ucsc.edu;bcgsc.ca	37	18	2920361	2920361	+	Missense_Mutation	SNP	C	C	A	rs201160155		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LPIN2	NM_014646	exon20	c.G2621T	p.C874F	TCCGGGCAGGGAA	.	39.0	4.0	44.0	0.0	C|0.999;A|0.001	227
LRAT	9227	ucsc.edu;bcgsc.ca	37	4	155665881	155665881	+	Missense_Mutation	SNP	G	G	A	rs139819099	byfrequency;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRAT	NM_004744	exon2	c.G403A	p.A135T	AAAAAGGCACTGC	.	42.0	4.0	33.0	0.0	G|0.999;T|0.001	90
LRBA	987	ucsc.edu;bcgsc.ca	37	4	151408925	151408925	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRBA	NM_006726	exon43	c.T6543C	p.P2181P	AACACGAGGTAGA	.	51.0	4.0	54.0	0.0	.	157
LRRC32	2615	ucsc.edu;bcgsc.ca	37	11	76371606	76371606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRC32	NM_005512	exon3	c.T1031C	p.L344P	AGGTTCAGGAAGC	.	31.0	4.0	37.0	0.0	.	90
LRRC38	126755	ucsc.edu;bcgsc.ca	37	1	13839496	13839496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001010847	exon1	c.T593C	p.F198S	CAGGAGAAGAGGT	.	42.0	4.0	95.0	0.0	.	.
LRRC73	221424	ucsc.edu;bcgsc.ca	37	6	43476630	43476630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001012974	exon2	c.G301T	p.G101W	CCAGCCCCGCATC	.	52.0	4.0	79.0	0.0	.	.
LRRC8A	56262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131678510	131678510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRC8A	NM_001127244	exon4	c.C2293T	p.R765W	GGCAACCGGCTGG	.	20.0	7.0	30.0	0.0	.	90
MAATS1	89876	ucsc.edu;bcgsc.ca	37	3	119434475	119434475	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_033364	exon6	c.G567A	p.V189V	TACTGTGGGCACT	.	44.0	4.0	33.0	0.0	.	.
MAGEF1	64110	ucsc.edu;bcgsc.ca	37	3	184429305	184429305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAGEF1	NM_022149	exon1	c.T305C	p.M102T	TTCACCATCTCCG	.	35.0	4.0	42.0	0.0	.	91
MAPK13	5603	ucsc.edu;bcgsc.ca	37	6	36100412	36100412	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAPK13	NM_002754	exon3	c.G264A	p.L88L	GCTCCTGGATGTC	.	42.0	4.0	58.0	0.0	.	1521
MATN2	4147	ucsc.edu;bcgsc.ca	37	8	98973649	98973649	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MATN2	NM_002380	exon5	c.T849C	p.C283C	TCTGTGTGCCATG	.	48.0	4.0	34.0	0.0	.	24
MCM3AP	8888	ucsc.edu;bcgsc.ca	37	21	47686021	47686021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MCM3AP	NM_003906	exon11	c.A2849G	p.K950R	ACCGACTTCCTGG	.	40.0	4.0	34.0	0.0	.	291
MDN1	23195	ucsc.edu;bcgsc.ca	37	6	90353833	90353833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MDN1	NM_014611	exon102	c.T16682C	p.F5561S	AATGGGAACTCTT	.	54.0	5.0	104.0	0.0	.	100
MED27	9442	ucsc.edu;bcgsc.ca	37	9	134955144	134955144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED27	NM_001253881	exon1	c.A88G	p.R30G	ACACCCTGCTCAC	.	48.0	4.0	58.0	0.0	.	69
MEGF8	1954	ucsc.edu;bcgsc.ca	37	19	42839306	42839306	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MEGF8	NM_001271938	exon4	c.T678C	p.S226S	CTTCTCTGCCCGT	.	45.0	4.0	44.0	0.0	.	23
METTL1	4234	ucsc.edu;bcgsc.ca	37	12	58163694	58163694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	METTL1	NM_005371	exon3	c.A320G	p.E107G	CGGATCTCCAGAC	.	43.0	4.0	40.0	0.0	.	492
MIR200A	406983	broad.mit.edu;mdanderson.org	37	1	1103284	1103284	+	RNA	SNP	C	C	G	rs202051309	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	GATTTCCCAGCTT	.	48.0	16.0	65.0	0.0	C|0.996;T|0.004	.
MLF2	8079	ucsc.edu;bcgsc.ca	37	12	6861205	6861205	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLF2	NM_005439	exon3	c.T66C	p.I22I	ACGGTGAATAGCA	.	43.0	4.0	35.0	0.0	.	153
MLL	4297	ucsc.edu;bcgsc.ca	37	11	118343416	118343416	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLL	NM_001197104	exon3	c.C1542T	p.P514P	ACTGCCCATTTCC	.	40.0	4.0	34.0	0.0	.	1255
MMP15	4324	ucsc.edu;bcgsc.ca	37	16	58075733	58075733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MMP15	NM_002428	exon6	c.G1123T	p.D375Y	GACTTTGACACAG	.	38.0	4.0	57.0	0.0	.	713
MMS19	64210	ucsc.edu;bcgsc.ca	37	10	99238131	99238131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_022362	exon4	c.T278C	p.L93P	TAGAACAGTATCA	.	26.0	5.0	30.0	0.0	.	.
MRAS	22808	ucsc.edu;bcgsc.ca	37	3	138117409	138117409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRAS	NM_012219	exon4	c.A446G	p.N149S	AACACAATGTAGG	.	29.0	4.0	46.0	0.0	.	848
MRC2	9902	ucsc.edu;bcgsc.ca	37	17	60759723	60759723	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRC2	NM_006039	exon20	c.C2931A	p.I977I	CTGGATCCAGTTC	.	45.0	4.0	82.0	0.0	.	117
MTHFD1L	25902	ucsc.edu;bcgsc.ca	37	6	151258025	151258025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTHFD1L	NM_001242767	exon12	c.T1345C	p.S449P	GTCAACTCCTTTG	.	20.0	5.0	25.0	0.0	.	292
MUC2	4583	ucsc.edu;bcgsc.ca	37	11	1087497	1087497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MUC2	NM_002457	exon24	c.A3248G	p.D1083G	CCTGTGACACGGG	.	38.0	4.0	57.0	1.0	.	90
MYBL2	4605	ucsc.edu;bcgsc.ca	37	20	42331148	42331148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYBL2	NM_002466	exon8	c.G970A	p.D324N	TGGTGTGACCTGA	.	48.0	5.0	48.0	0.0	.	415
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27421740	27421740	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO18A	NM_078471	exon30	c.C4638T	p.D1546D	CTCCAGGTCCCGG	.	108.0	33.0	145.0	0.0	.	22
MYO1C	4641	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	1387559	1387559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO1C	NM_001080779	exon2	c.T114G	p.S38R	GAGCGCACTCTCC	.	9.0	5.0	20.0	1.0	.	90
NAGA	4668	ucsc.edu;bcgsc.ca	37	22	42463846	42463846	+	Missense_Mutation	SNP	C	C	T	rs202010344		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NAGA	NM_000262	exon3	c.G247A	p.G83S	GACCACCGATCCA	.	39.0	4.0	45.0	0.0	C|0.999;T|0.000	90
NALCN	259232	ucsc.edu;bcgsc.ca	37	13	101881828	101881828	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NALCN	NM_052867	exon13	c.C1542T	p.A514A	GAGGCTGGCAGTA	.	40.0	4.0	51.0	0.0	.	167
NCLN	56926	ucsc.edu;bcgsc.ca	37	19	3204024	3204024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCLN	NM_020170	exon8	c.A911G	p.N304S	AGGACAATGTGGC	.	46.0	4.0	56.0	0.0	.	90
NFKB1	4790	ucsc.edu;bcgsc.ca	37	4	103533727	103533727	+	Silent	SNP	T	T	C	rs147169338	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NFKB1	NM_003998	exon22	c.T2556C	p.S852S	GCTGAGTCCTGCT	.	34.0	4.0	25.0	0.0	T|1.000;G|0.000	912
NISCH	11188	ucsc.edu;bcgsc.ca	37	3	52525524	52525524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NISCH	NM_007184	exon20	c.C3899T	p.T1300I	ACAAGACCACAGG	.	34.0	4.0	45.0	0.0	.	93
NOTCH2	4853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120529697	120529697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NOTCH2	NM_001200001	exon5	c.G760A	p.G254R	TGCTCCCTTCAAA	.	27.0	6.0	19.0	0.0	.	1441
NPR1	4881	ucsc.edu;bcgsc.ca	37	1	153660119	153660119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NPR1	NM_000906	exon14	c.G2102T	p.W701L	AGCTGTGGACGGC	.	42.0	4.0	33.0	0.0	.	393
NRAP	4892	ucsc.edu;bcgsc.ca	37	10	115417257	115417257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NRAP	NM_001261463	exon4	c.C332A	p.A111E	TTAGGTGCACCTT	.	37.0	4.0	39.0	0.0	.	522
NSMCE1	197370	ucsc.edu;bcgsc.ca	37	16	27238075	27238075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NSMCE1	NM_145080	exon6	c.A566G	p.K189R	CAGATCTTCACCG	.	43.0	5.0	34.0	0.0	.	90
NUDT5	11164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	12221083	12221083	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NUDT5	NM_014142	exon4	c.T180C	p.D60D	CCTACCATCCGCA	.	80.0	35.0	90.0	1.0	.	92
OAS1	4938	ucsc.edu;bcgsc.ca	37	12	113354512	113354512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OAS1	NM_001032409	exon4	c.A853G	p.K285E	ATTGAAAAGTACC	.	47.0	4.0	43.0	0.0	.	70
OGFRL1	79627	ucsc.edu;bcgsc.ca	37	6	72011093	72011093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OGFRL1	NM_024576	exon7	c.C697A	p.Q233K	AGGTCCCAGCACA	.	36.0	5.0	41.0	0.0	.	68
OR6K6	128371	ucsc.edu;bcgsc.ca	37	1	158724983	158724983	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR6K6	NM_001005184	exon1	c.C378A	p.L126L	CTGCCTCCTGCAG	.	41.0	4.0	33.0	0.0	.	69
OST4	100128731	ucsc.edu;bcgsc.ca	37	2	27294250	27294250	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001134693	exon2	c.C81T	p.Y27Y	GGCCACGTAGTGA	.	41.0	6.0	38.0	0.0	.	.
PAICS	10606	ucsc.edu;bcgsc.ca	37	4	57302496	57302496	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAICS	NM_006452	exon2	c.16+2T>C	.	TGAGGGTGAGTAA	.	38.0	4.0	58.0	0.0	.	68
PAPPA	5069	ucsc.edu;bcgsc.ca	37	9	119116037	119116037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAPPA	NM_002581	exon17	c.T4312C	p.C1438R	AGTGAGTGTAGGA	.	45.0	4.0	86.0	0.0	.	77
PAQR3	152559	ucsc.edu;bcgsc.ca	37	4	79856387	79856387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAQR3	NM_001040202	exon2	c.G236T	p.G79V	AAGAAACCCAGCA	.	28.0	4.0	32.0	0.0	.	46
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223066132	223066132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAX3	NM_181459	exon9	c.G1450A	p.A484T	CTTACGCGATATC	.	61.0	22.0	58.0	0.0	.	1821
PAX8	7849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113993092	113993092	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAX8	NM_003466	exon9	c.C966T	p.S322S	TAAAGAGGAAGGG	.	76.0	12.0	75.0	0.0	.	684
PC	5091	ucsc.edu;bcgsc.ca	37	11	66619923	66619923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PC	NM_000920	exon14	c.G1812A	p.M604I	GTTCTCCATGCTG	.	24.0	4.0	52.0	0.0	.	228
PCDHB15	56121	ucsc.edu;bcgsc.ca	37	5	140627378	140627378	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDHB15	NM_018935	exon1	c.C2232T	p.T744T	CGGGACCCTTTCC	.	49.0	5.0	56.0	0.0	.	156
PCID2	55795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113835485	113835485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCID2	NM_001258212	exon10	c.A907G	p.R303G	TCATCCTTTTGTT	.	31.0	11.0	54.0	0.0	.	90
PGBD5	79605	ucsc.edu;bcgsc.ca	37	1	230461062	230461062	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PGBD5	NM_001258311	exon6	c.A1373T	p.Y458F	TTGCTGTATTTGT	.	52.0	5.0	56.0	0.0	.	93
PHC2	1912	ucsc.edu;bcgsc.ca	37	1	33832734	33832734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PHC2	NM_198040	exon6	c.A959G	p.H320R	AGGGGGTGGGCAG	.	43.0	4.0	43.0	0.0	.	227
PHLDB2	90102	ucsc.edu;bcgsc.ca	37	3	111671497	111671497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PHLDB2	NM_001134439	exon11	c.A2710G	p.T904A	AAGAAAACCACAT	.	39.0	4.0	56.0	0.0	.	96
PIK3CD	5293	ucsc.edu;bcgsc.ca	37	1	9776674	9776674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIK3CD	NM_005026	exon6	c.C777A	p.F259L	CCAGTTCCAGGTG	.	39.0	4.0	50.0	0.0	.	1311
PIKFYVE	200576	ucsc.edu;bcgsc.ca	37	2	209198115	209198115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIKFYVE	NM_015040	exon24	c.G4040A	p.G1347E	TTTATGGGCACCA	.	65.0	6.0	45.0	0.0	.	583
PIKFYVE	200576	ucsc.edu;bcgsc.ca	37	2	209203240	209203240	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIKFYVE	NM_015040	exon29	c.G4620T	p.A1540A	AAGTGCGATGGAT	.	38.0	4.0	70.0	0.0	.	583
PITPNM1	9600	ucsc.edu;bcgsc.ca	37	11	67264809	67264809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PITPNM1	NM_001130848	exon14	c.C2039T	p.P680L	CTGCTGGGGCCGT	.	38.0	4.0	49.0	0.0	.	227
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160804063	160804063	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLA2R1	NM_001195641	exon26	c.A3717G	p.R1239R	AGATTGTCTTGTT	.	118.0	21.0	77.0	0.0	.	93
PLBD2	196463	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	113824744	113824744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLBD2	NM_173542	exon10	c.C1289T	p.S430F	GCAGGTCCTTCGA	.	30.0	15.0	18.0	0.0	.	68
PLCL2	23228	ucsc.edu;bcgsc.ca	37	3	17053597	17053597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLCL2	NM_015184	exon2	c.T2381A	p.F794Y	AGGTATTCAAGAA	.	39.0	4.0	56.0	0.0	.	229
PLEKHG4	25894	ucsc.edu;bcgsc.ca	37	16	67320715	67320715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLEKHG4	NM_001129728	exon17	c.C2818A	p.H940N	GGGCGCCACAAGT	.	39.0	4.0	40.0	0.0	.	92
PLOD1	5351	ucsc.edu;bcgsc.ca	37	1	12020740	12020740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLOD1	NM_000302	exon10	c.C1013T	p.A338V	TCCTGGCACAGCA	.	35.0	4.0	36.0	0.0	.	155
PQLC1	80148	ucsc.edu;bcgsc.ca	37	18	77710729	77710729	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PQLC1	NM_025078	exon2	c.C198T	p.L66L	CCAGAAGAGTATC	.	51.0	5.0	73.0	0.0	.	154
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47207834	47207834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRKD2	NM_016457	exon4	c.G584A	p.R195H	GACAGGCGCCGTT	.	47.0	13.0	31.0	0.0	.	759
PSKH2	85481	broad.mit.edu;bcgsc.ca	37	8	87076798	87076798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PSKH2	NM_033126	exon2	c.A248G	p.K83R	GTGGTCTTCTGCT	.	109.0	7.0	129.0	0.0	.	385
PYGM	5837	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	64522270	64522270	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PYGM	NM_005609	exon8	c.T894A	p.Y298X	CACGAAATACTCC	.	41.0	8.0	37.0	0.0	.	92
QRSL1	55278	ucsc.edu;bcgsc.ca	37	6	107113739	107113739	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	QRSL1	NM_018292	exon11	c.T1449C	p.C483C	GTTTTGTGACCAG	.	39.0	4.0	67.0	0.0	.	90
RAD51B	5890	ucsc.edu;bcgsc.ca	37	14	68331784	68331784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAD51B	NM_133509	exon5	c.T380C	p.L127S	CTACATTACCCAC	.	38.0	4.0	30.0	0.0	.	660
RETNLB	84666	ucsc.edu;bcgsc.ca	37	3	108476030	108476030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RETNLB	NM_032579	exon1	c.G3T	p.M1I	CGGCCCCATCCTG	.	50.0	4.0	53.0	0.0	.	91
REV3L	5980	ucsc.edu;bcgsc.ca	37	6	111696640	111696640	+	Missense_Mutation	SNP	G	G	T	rs183900471	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	REV3L	NM_002912	exon13	c.C2918A	p.P973H	ATGACAGGGGGCA	.	41.0	5.0	45.0	0.0	G|0.999;A|0.000	294
RIMS1	22999	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	72892264	72892264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RIMS1	NM_014989	exon6	c.T1090G	p.Y364D	GCTCGGTACCCGG	.	45.0	20.0	121.0	1.0	.	144
RINL	126432	ucsc.edu;bcgsc.ca	37	19	39360320	39360320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RINL	NM_001195833	exon10	c.T1367C	p.L456P	GCCGGCAGGAAGG	.	45.0	6.0	43.0	0.0	.	91
RNASE10	338879	ucsc.edu;bcgsc.ca	37	14	20979191	20979191	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RNASE10	NM_001012975	exon1	c.T561C	p.T187T	GGTCACTCCTAAC	.	35.0	5.0	35.0	0.0	.	90
RTEL1	51750	ucsc.edu;bcgsc.ca	37	20	62324537	62324537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RTEL1	NM_032957	exon30	c.G2965A	p.E989K	CAGTTTGAGGAGG	.	44.0	4.0	44.0	0.0	.	44
RYR3	6263	ucsc.edu;bcgsc.ca	37	15	34030707	34030707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RYR3	NM_001243996	exon50	c.G7572T	p.W2524C	AGGATGGGGGAGC	.	59.0	5.0	35.0	0.0	.	520
SEC14L3	266629	ucsc.edu;bcgsc.ca	37	22	30860870	30860870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEC14L3	NM_174975	exon8	c.G601A	p.G201S	TGTAGCCCACAGG	.	56.0	5.0	88.0	0.0	.	95
SEMG1	6406	broad.mit.edu;bcgsc.ca	37	20	43837123	43837123	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEMG1	NM_003007	exon2	c.A1185G	p.Q395Q	TAAGCAAGAGCCA	.	66.0	4.0	62.0	0.0	.	92
SETD1A	9739	ucsc.edu;bcgsc.ca	37	16	30976519	30976519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SETD1A	NM_014712	exon7	c.A1456G	p.S486G	CAGCACAGCAGCC	.	50.0	4.0	42.0	0.0	.	93
SHC1	6464	ucsc.edu;bcgsc.ca	37	1	154938479	154938479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SHC1	NM_001130040	exon10	c.G1330A	p.A444T	GCCCAGCACCACC	.	49.0	4.0	36.0	0.0	.	847
SLC25A37	51312	ucsc.edu;bcgsc.ca	37	8	23425873	23425873	+	Missense_Mutation	SNP	G	G	A	rs147621958		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC25A37	NM_016612	exon3	c.G478A	p.V160I	GATGCGGTAATGA	.	41.0	4.0	40.0	0.0	G|0.999;A|0.000	90
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118170071	118170071	+	Missense_Mutation	SNP	C	C	T	rs141202988		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	SLC30A8,NS,carcinoma,0	SLC30A8	NM_173851	exon4	c.C560T	p.A187V	CAGTGGCGGCCAA	.	101.0	65.0	88.0	0.0	C|1.000;T|0.000	229
SLC44A3	126969	ucsc.edu;bcgsc.ca	37	1	95293104	95293104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC44A3	NM_001114106	exon4	c.G320A	p.G107D	TCAAAGGTACGCA	.	44.0	4.0	52.0	0.0	.	91
SLC4A8	9498	ucsc.edu;bcgsc.ca	37	12	51868218	51868218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC4A8	NM_001039960	exon15	c.A1997G	p.N666S	GGGCTAACCTGAC	.	48.0	4.0	30.0	0.0	.	95
SLC6A4	6532	ucsc.edu;bcgsc.ca	37	17	28543143	28543143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC6A4	NM_001045	exon7	c.T929C	p.L310P	TAGAAGAGAACAC	.	28.0	4.0	30.0	0.0	.	94
SLIT2	9353	ucsc.edu;bcgsc.ca	37	4	20611768	20611768	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLIT2	NM_004787	exon34	c.T3825C	p.F1275F	GAATTTTGACTCT	.	43.0	4.0	48.0	0.0	.	521
SLITRK3	22865	ucsc.edu;bcgsc.ca	37	3	164906098	164906098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLITRK3	NM_014926	exon2	c.C2521A	p.P841T	CTGCTGGGTGGTG	.	46.0	4.0	37.0	0.0	.	100
SLITRK3	22865	ucsc.edu;bcgsc.ca	37	3	164908427	164908427	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLITRK3	NM_014926	exon2	c.A192G	p.K64K	AAATCCTTTACTG	.	52.0	6.0	51.0	0.0	.	100
SMAD9	4093	ucsc.edu;bcgsc.ca	37	13	37453767	37453767	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMAD9	NM_005905	exon2	c.A60G	p.R20R	TAGCAGTCTCTTC	.	48.0	4.0	92.0	0.0	.	414
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2203159	2203159	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMG6	NM_017575	exon2	c.G888T	p.V296V	CACAGACACTTGC	.	65.0	19.0	56.0	0.0	.	228
SMOX	54498	ucsc.edu;bcgsc.ca	37	20	4164179	4164179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMOX	NM_175839	exon6	c.T1408C	p.S470P	TTGCGCTCGGCCT	.	29.0	4.0	48.0	0.0	.	153
SNX18	112574	ucsc.edu;bcgsc.ca	37	5	53814671	53814671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SNX18	NM_052870	exon1	c.T889C	p.S297P	TACATCTCCTACA	.	40.0	4.0	47.0	0.0	.	226
SP5	389058	ucsc.edu;bcgsc.ca	37	2	171573770	171573770	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SP5	NM_001003845	exon2	c.G1053A	p.T351T	TCACACGGGCGAG	.	39.0	5.0	36.0	0.0	.	90
SPATA20	64847	ucsc.edu;bcgsc.ca	37	17	48625120	48625120	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPATA20	NM_022827	exon2	c.T117C	p.S39S	CAGGAGTCCCAGC	.	46.0	4.0	81.0	0.0	.	90
SPATA2L	124044	ucsc.edu;bcgsc.ca	37	16	89764258	89764258	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPATA2L	NM_152339	exon3	c.C759T	p.P253P	CGCCGGGGGCGAG	.	24.0	4.0	26.0	0.0	.	90
SPHK2	56848	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49131441	49131441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPHK2	NM_020126	exon6	c.G779A	p.R260H	TAGATCGCCCTGA	.	26.0	8.0	37.0	0.0	.	658
SPOCK2	9806	ucsc.edu;bcgsc.ca	37	10	73831975	73831975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPOCK2	NM_014767	exon5	c.A286T	p.S96C	GGCGGCTGCACTT	.	45.0	5.0	64.0	1.0	.	90
SPTBN2	6712	ucsc.edu;bcgsc.ca	37	11	66482855	66482855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPTBN2	NM_006946	exon4	c.A321G	p.T107T	GCCCTTTGTAGGC	.	42.0	4.0	51.0	0.0	.	155
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42182309	42182309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPTBN5	NM_016642	exon4	c.T374C	p.I125T	TGGGAGATCTGGA	.	60.0	7.0	61.0	0.0	.	91
ST8SIA3	51046	ucsc.edu;bcgsc.ca	37	18	55024608	55024608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ST8SIA3	NM_015879	exon3	c.T767C	p.V256A	CAACTGTGACCAG	.	50.0	4.0	42.0	0.0	.	136
STEAP1B	256227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22533059	22533059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001164460	exon3	c.A481G	p.R161G	GCTTTCTTGTTAA	.	179.0	71.0	149.0	1.0	.	.
STXBP6	29091	broad.mit.edu;bcgsc.ca	37	14	25281918	25281918	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STXBP6	NM_014178	exon6	c.T630C	p.C210C	TTCTCAACATTTG	.	51.0	6.0	42.0	1.0	.	90
TAS2R16	50833	ucsc.edu;bcgsc.ca	37	7	122634852	122634852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TAS2R16	NM_016945	exon1	c.C837A	p.S279R	AGGGCTGCTCAGC	.	43.0	4.0	31.0	0.0	.	92
TAS2R30	259293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	11286203	11286203	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001097643	exon1	c.A641T	p.K214I	GATCCTTTGCCAT	.	205.0	22.0	131.0	0.0	.	.
TENM4	26011	ucsc.edu;bcgsc.ca	37	11	78369384	78369384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001098816	exon34	c.A8029T	p.T2677S	AGCGTGTGTTCAA	.	55.0	5.0	67.0	0.0	.	.
THEMIS	387357	ucsc.edu;bcgsc.ca	37	6	128134525	128134525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THEMIS	NM_001010923	exon4	c.T1261C	p.Y421H	CCTCATAGGACTT	.	31.0	4.0	48.0	0.0	.	94
TLE3	7090	ucsc.edu;bcgsc.ca	37	15	70368485	70368485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TLE3	NM_001105192	exon5	c.A247G	p.K83E	GTCTCTTCGCAAT	.	45.0	4.0	37.0	0.0	.	522
TMC7	79905	ucsc.edu;bcgsc.ca	37	16	19070791	19070791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMC7	NM_024847	exon15	c.T2081C	p.I694T	TGGTCATCCAGCT	.	43.0	5.0	27.0	0.0	.	93
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu	37	3	129389772	129389772	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.912delG	p.R304fs	GAGCTTCCTGTGG	.	141.0	11.0	155.0	0.0	.	91
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	129389775	129389787	+	Frame_Shift_Del	DEL	GTGGTAGTGCTCA	GTGGTAGTGCTCA	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	GTGGTAGTGCTCA	GTGGTAGTGCTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.897_909del	p.299_303del	CTTCCTGTGGTAG	.	138.0	11.0	156.0	0.0	.	91
TMEM234	56063	ucsc.edu;bcgsc.ca	37	1	32686739	32686739	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM234	NM_019118	exon3	c.A228G	p.A76A	TGTCGATGCCAAG	.	46.0	4.0	44.0	0.0	.	90
TNK1	8711	ucsc.edu;bcgsc.ca	37	17	7291786	7291786	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNK1	NM_001251902	exon11	c.A1554G	p.S518S	TGGTTCAAGCCCC	.	31.0	4.0	63.0	0.0	.	547
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175372511	175372511	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNR	NM_003285	exon4	c.C741T	p.D247D	CTCCCCGTCCACG	.	42.0	15.0	37.0	0.0	.	324
TRERF1	55809	ucsc.edu;bcgsc.ca	37	6	42237051	42237051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRERF1	NM_033502	exon5	c.A278G	p.N93S	ACATGGTTTCCAG	.	22.0	4.0	25.0	0.0	.	230
TSC22D3	1831	broad.mit.edu;bcgsc.ca	37	X	106959961	106959961	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSC22D3	NM_004089	exon1	c.T81A	p.S27S	AAGCAGAGAAGAG	.	34.0	8.0	87.0	0.0	.	197
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179430304	179430304	+	Missense_Mutation	SNP	C	C	T	rs202149931		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_001267550	exon326	c.G80555A	p.R26852H	TTGACACGGAACT	.	97.0	26.0	70.0	0.0	C|0.999;T|0.001	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179610836	179610836	+	Missense_Mutation	SNP	C	C	T	rs141483365		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_133379	exon46	c.G16291A	p.E5431K	TCTCCTCGCTAAT	.	101.0	23.0	91.0	0.0	C|1.000;T|0.000	636
TVP23A	780776	ucsc.edu;bcgsc.ca	37	16	10912025	10912025	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001079512	exon2	c.T24C	p.D8D	CTCGGTATCGTCC	.	17.0	4.0	18.0	0.0	.	.
TYR	7299	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88911776	88911776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TYR	NM_000372	exon1	c.G655C	p.E219Q	CGGTGGGAACAAG	.	25.0	8.0	25.0	0.0	.	92
UFM1	51569	ucsc.edu;bcgsc.ca	37	13	38933458	38933458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UFM1	NM_016617	exon5	c.G178T	p.A60S	AATCCTGCACAGA	.	38.0	4.0	74.0	0.0	.	68
UNC13C	440279	broad.mit.edu;bcgsc.ca	37	15	54825170	54825170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13C	NM_001080534	exon24	c.A5602G	p.M1868V	AATCAAATGAGAG	.	160.0	8.0	144.0	0.0	.	51
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54306377	54306377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13C	NM_001080534	exon1	c.C1277T	p.T426I	CCCAGACATATGA	.	86.0	36.0	65.0	0.0	.	51
UQCC	55245	ucsc.edu;bcgsc.ca	37	20	33902530	33902530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UQCC	NM_018244	exon8	c.G612T	p.M204I	ATTTGTCATGAGG	.	45.0	5.0	54.0	0.0	.	153
UTP20	27340	ucsc.edu;bcgsc.ca	37	12	101689334	101689334	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UTP20	NM_014503	exon12	c.T1328A	p.L443Q	AAGCTCTGGCCAT	.	41.0	4.0	38.0	0.0	.	155
VCAN	1462	ucsc.edu;bcgsc.ca	37	5	82817434	82817434	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VCAN	NM_004385	exon7	c.T3309C	p.S1103S	TGTGTCTTATCCA	.	46.0	4.0	39.0	0.0	.	238
VNN2	8875	ucsc.edu;bcgsc.ca	37	6	133078849	133078849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VNN2	NM_004665	exon1	c.A174G	p.I58M	AATGTCTATATTC	.	44.0	4.0	71.0	0.0	.	90
WDR47	22911	ucsc.edu;bcgsc.ca	37	1	109553939	109553939	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WDR47	NM_001142550	exon5	c.T750C	p.S250S	CAGTAAACTCAGA	.	42.0	5.0	50.0	0.0	.	91
XRN2	22803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21346075	21346075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	XRN2	NM_012255	exon25	c.C2272T	p.P758S	AAAGACCCACAGT	.	93.0	40.0	107.0	0.0	.	515
ZBTB48	3104	ucsc.edu;bcgsc.ca	37	1	6646059	6646059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZBTB48	NM_005341	exon4	c.A1013G	p.E338G	AGCATGAAGCCCG	.	44.0	4.0	56.0	0.0	.	514
ZDHHC3	51304	ucsc.edu;bcgsc.ca	37	3	44986740	44986740	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZDHHC3	NM_016598	exon3	c.T351C	p.S117S	CTGTAAACTCTCG	.	42.0	5.0	105.0	0.0	.	90
ZNF20	7568	ucsc.edu;bcgsc.ca	37	19	12243668	12243668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF20	NM_021143	exon4	c.C1333T	p.H445Y	CAGTGTGTGTCCT	.	41.0	4.0	40.0	0.0	.	22
ZNF416	55659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58084146	58084146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF416	NM_017879	exon4	c.C1126G	p.H376D	CTGTGTGAGTTCT	.	115.0	29.0	82.0	1.0	.	90
ZNF433	163059	ucsc.edu;bcgsc.ca	37	19	12128986	12128986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001080411	exon2	c.C134A	p.S45Y	CCTATAGAGGCCA	.	50.0	4.0	56.0	0.0	.	.
ZNF445	353274	ucsc.edu;bcgsc.ca	37	3	44492406	44492406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF445	NM_181489	exon5	c.C647A	p.P216Q	TCTCCCGGGCACC	.	37.0	4.0	41.0	0.0	.	91
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109690181	109690181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF462	NM_021224	exon3	c.C3988G	p.H1330D	CTCCTGCATTACC	.	42.0	4.0	54.0	0.0	.	95
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109734383	109734383	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF462	NM_021224	exon8	c.T6525C	p.P2175P	TGTGCCTCTTTCT	.	40.0	5.0	57.0	0.0	.	95
ZNF469	84627	ucsc.edu;bcgsc.ca	37	16	88498440	88498440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001127464	exon2	c.G4478T	p.G1493V	CGGGGGGAAAGGT	.	29.0	4.0	45.0	0.0	.	.
ZNF502	91392	ucsc.edu;bcgsc.ca	37	3	44763562	44763562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF502	NM_001134440	exon4	c.A1253G	p.Q418R	TCATTCAGAGCAT	.	36.0	4.0	34.0	0.0	.	90
ZNF503	84858	broad.mit.edu;bcgsc.ca	37	10	77159617	77159617	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF503	NM_032772	exon2	c.G831A	p.T277T	CAGCCCCGTGGGT	.	31.0	4.0	66.0	0.0	.	91
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56585829	56585829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF532	NM_018181	exon4	c.A310G	p.K104E	TACAGTAAAGATG	.	73.0	14.0	56.0	0.0	.	154
ZNF554	115196	ucsc.edu;bcgsc.ca	37	19	2827728	2827728	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF554	NM_001102651	exon3	c.C240T	p.N80N	CAGGAACGTGGTC	.	39.0	4.0	52.0	0.0	.	91
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3957431	3957431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZZEF1	NM_015113	exon34	c.G5354T	p.G1785V	TCACACCCATCAC	.	50.0	16.0	42.0	0.0	.	93
