Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	ucsc.edu;bcgsc.ca	37	12	9010546	9010546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	A2ML1	NM_144670	exon26	c.A3112T	p.T1038S	AGGCTGACAGCGT	.	46.0	4.0	68.0	0.0	.	93
AADAC	13	ucsc.edu;bcgsc.ca	37	3	151545758	151545758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AADAC	NM_001086	exon5	c.C998A	p.P333H	GCTTACCCCTGAC	.	45.0	4.0	53.0	0.0	.	280
ABR	29	ucsc.edu;bcgsc.ca	37	17	975919	975919	+	Missense_Mutation	SNP	A	A	G	rs200320950		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABR	NM_021962	exon8	c.T829C	p.F277L	ACAGGAAGTTCTG	.	31.0	5.0	83.0	0.0	A|1.000;G|0.000	91
ADAMTS7	11173	ucsc.edu;bcgsc.ca	37	15	79058506	79058506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTS7	NM_014272	exon19	c.C3747T	p.T1249T	GGAGTGGGTGCTG	.	25.0	4.0	48.0	0.0	.	226
ADORA2B	136	ucsc.edu;bcgsc.ca	37	17	15878047	15878047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADORA2B	NM_000676	exon2	c.G390T	p.W130C	CCTCTGGGTCCTT	.	45.0	5.0	87.0	0.0	.	228
AGO1	26523	ucsc.edu;bcgsc.ca	37	1	36367825	36367825	+	Silent	SNP	C	C	T	rs199936275	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_012199	exon11	c.C1284T	p.P428P	CACACCCAATCAG	.	46.0	4.0	29.0	0.0	C|0.999;A|0.000	.
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62290411	62290411	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AHNAK	NM_001620	exon5	c.G11478T	p.V3826V	CAGGTTCACATCC	.	81.0	34.0	71.0	0.0	.	109
ALDH1A2	8854	ucsc.edu;bcgsc.ca	37	15	58247428	58247428	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALDH1A2	NM_003888	exon13	c.G1524T	p.T508T	TGTCACCGTCTTA	.	76.0	6.0	77.0	0.0	.	226
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63410591	63410591	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_152424	exon2	c.A2576T	p.Y859F	CCTTGGTAGAATC	.	82.0	36.0	107.0	0.0	.	.
ANGPT4	51378	ucsc.edu;bcgsc.ca	37	20	896833	896833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANGPT4	NM_015985	exon1	c.C25A	p.Q9K	TGCCCTGCAGCAT	.	27.0	4.0	38.0	0.0	.	92
APAF1	317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99117014	99117014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APAF1	NM_181861	exon23	c.A3128G	p.H1043R	GAGGCCATCAGGA	.	123.0	48.0	113.0	0.0	.	229
ARAP1	116985	ucsc.edu;bcgsc.ca	37	11	72407664	72407664	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARAP1	NM_001040118	exon23	c.C3202A	p.R1068R	GCTCTCGGTACCT	.	34.0	5.0	26.0	0.0	.	91
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36272086	36272086	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGAP33	NM_052948	exon12	c.T1017G	p.I339M	GTTCATTGAGGCC	.	42.0	19.0	34.0	0.0	.	229
ARHGEF39	84904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35662720	35662720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032818	exon7	c.A692T	p.Q231L	CAGCCCTGGCGTA	.	94.0	34.0	57.0	0.0	.	.
ARHGEF40	55701	ucsc.edu;bcgsc.ca	37	14	21550138	21550138	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGEF40	NM_018071	exon14	c.C3111A	p.I1037I	GCTGATCCGAGGC	.	40.0	4.0	40.0	0.0	.	228
ARID1B	57492	ucsc.edu;bcgsc.ca	37	6	157502181	157502181	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARID1B	NM_020732	exon12	c.T3214A	p.W1072R	AAGCTCTGGGTCG	.	34.0	4.0	25.0	0.0	.	154
ATP5G2	517	ucsc.edu;bcgsc.ca	37	12	54063081	54063081	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP5G2	NM_005176	exon4	c.C333T	p.V111V	GCTAGAGACAAGT	.	38.0	4.0	38.0	0.0	.	91
BEST4	266675	ucsc.edu;bcgsc.ca	37	1	45251285	45251285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BEST4	NM_153274	exon5	c.C700A	p.L234I	AGACGAGGGGGAT	.	56.0	4.0	52.0	0.0	.	91
BICD1	636	ucsc.edu;bcgsc.ca	37	12	32520626	32520626	+	Missense_Mutation	SNP	C	C	A	rs202246949	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BICD1	NM_001003398	exon8	c.C2483A	p.P828Q	TGCCTCCGTACCG	.	20.0	4.0	31.0	0.0	.	153
BIRC3	330	ucsc.edu;bcgsc.ca	37	11	102206714	102206714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BIRC3	NM_001165	exon7	c.C1342T	p.R448W	TTAATCCGGAAGA	.	24.0	4.0	36.0	0.0	.	662
BOC	91653	broad.mit.edu;ucsc.edu	37	3	112991401	112991401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BOC	NM_033254	exon7	c.T812C	p.V271A	CCAGTGTCACCGG	.	63.0	7.0	84.0	1.0	.	157
BTK	695	broad.mit.edu;bcgsc.ca	37	X	100611053	100611053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTK	NM_000061	exon15	c.T1553C	p.L518P	CGGTGAAGGAACT	.	72.0	5.0	70.0	0.0	.	1395
C10orf12	26148	ucsc.edu;bcgsc.ca	37	10	98741664	98741664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf12	NM_015652	exon1	c.C517A	p.H173N	GAATGCCACTTTG	.	20.0	4.0	49.0	0.0	.	92
C10orf2	56652	ucsc.edu;bcgsc.ca	37	10	102750244	102750244	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf2	NM_021830	exon3	c.T1536C	p.H512H	TTGTCATGTGATC	.	24.0	4.0	53.0	0.0	.	69
C10orf35	219738	ucsc.edu;bcgsc.ca	37	10	71392795	71392795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf35	NM_145306	exon4	c.T346C	p.S116P	CTGGTGTCCCACC	.	58.0	8.0	112.0	0.0	.	92
C11orf35	256329	ucsc.edu;bcgsc.ca	37	11	557033	557033	+	Missense_Mutation	SNP	G	G	A	rs147157097	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C11orf35	NM_173573	exon8	c.C778T	p.R260W	GATGCCGCTCGGA	.	35.0	4.0	58.0	0.0	G|1.000;A|0.000	69
C12orf56	115749	ucsc.edu;bcgsc.ca	37	12	64661044	64661044	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C12orf56	NM_001170633	exon13	c.G1788A	p.L596L	TTTCTGCAAGGCT	.	33.0	4.0	31.0	0.0	.	68
CACNA1A	773	broad.mit.edu;bcgsc.ca	37	19	13476249	13476249	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CACNA1A	NM_001127221	exon5	c.G666T	p.A222A	GATCATCGCCTTC	.	83.0	6.0	85.0	2.0	.	67
CALCR	799	broad.mit.edu;bcgsc.ca	37	7	93072939	93072939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CALCR	NM_001164737	exon11	c.G881T	p.R294L	TACCACCGCAAGC	.	84.0	6.0	68.0	0.0	.	664
CAP2	10486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17463259	17463259	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CAP2	NM_006366	exon4	c.G255A	p.Q85Q	GGCCCAGCGGGCT	.	64.0	34.0	49.0	0.0	.	91
CAPNS2	84290	ucsc.edu;bcgsc.ca	37	16	55601229	55601229	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032330	exon1	c.A561G	p.E187E	AAATGAACAACTT	.	44.0	4.0	64.0	0.0	.	.
CATSPER1	117144	ucsc.edu;bcgsc.ca	37	11	65786337	65786337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CATSPER1	NM_053054	exon10	c.A2162G	p.K721R	AGCCGCTTCAGCA	.	30.0	4.0	27.0	0.0	.	92
CCDC13	152206	ucsc.edu;bcgsc.ca	37	3	42750572	42750572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC13	NM_144719	exon16	c.G2048T	p.R683L	TTTCCCCGCAGGG	.	34.0	5.0	62.0	0.0	.	91
CCR7	1236	ucsc.edu;bcgsc.ca	37	17	38715178	38715178	+	Missense_Mutation	SNP	G	G	T	rs193282140	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCR7	NM_001838	exon2	c.C27A	p.S9R	CAGCACGCTTTTC	.	39.0	5.0	61.0	0.0	G|0.999;A|0.001	659
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325802	158325802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CD1E	NM_030893	exon4	c.G811A	p.A271T	CTCCGAGCAACCC	.	128.0	41.0	92.0	0.0	.	93
CELF3	11189	ucsc.edu;bcgsc.ca	37	1	151681762	151681762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CELF3	NM_007185	exon4	c.A340G	p.M114V	CAAACATCTTCCG	.	43.0	5.0	30.0	0.0	.	91
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138219253	138219253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP70	NM_024491	exon15	c.C1525T	p.L509F	CTAAGAGTTCTTG	.	196.0	76.0	120.0	0.0	.	69
CERKL	375298	ucsc.edu;bcgsc.ca	37	2	182423419	182423419	+	Missense_Mutation	SNP	C	C	T	rs78484040	by1000genomes	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CERKL	NM_001030311	exon6	c.G772A	p.G258R	CATCTCCACCAAC	.	38.0	4.0	32.0	0.0	C|0.999;T|0.000	228
CFHR5	81494	ucsc.edu;bcgsc.ca	37	1	196965240	196965240	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CFHR5	NM_030787	exon6	c.C879A	p.V293V	TTCAGTCGAGGTG	.	38.0	4.0	43.0	0.0	.	154
CHD8	57680	ucsc.edu;bcgsc.ca	37	14	21859752	21859752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHD8	NM_001170629	exon35	c.A6935G	p.E2312G	CGGGTCTCCAGGT	.	53.0	4.0	54.0	0.0	.	277
CLCN7	1186	ucsc.edu;bcgsc.ca	37	16	1510868	1510868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLCN7	NM_001287	exon5	c.G433T	p.D145Y	CGATGTCAATGAA	.	38.0	4.0	56.0	1.0	.	92
CLIP2	7461	ucsc.edu;bcgsc.ca	37	7	73753180	73753180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLIP2	NM_032421	exon3	c.C524A	p.T175K	CGGGCACGGCCAC	.	24.0	4.0	28.0	0.0	.	93
COASY	80347	ucsc.edu;bcgsc.ca	37	17	40717936	40717936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COASY	NM_001042532	exon11	c.T1732C	p.W578R	AAAGCCTGGGCCC	.	38.0	4.0	51.0	1.0	.	115
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101778304	101778304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL15A1	NM_001855	exon11	c.C1550T	p.P517L	AGGAGCCCCTCAT	.	51.0	30.0	34.0	0.0	.	96
COL22A1	169044	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	139736874	139736874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL22A1	NM_152888	exon25	c.G2231A	p.G744E	GGAGGTCCAGGCT	.	25.0	11.0	19.0	0.0	.	103
CORO2B	10391	ucsc.edu;bcgsc.ca	37	15	68937510	68937510	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CORO2B	NM_006091	exon2	c.T27C	p.R9R	CTGGCGTCCGCAA	.	43.0	5.0	39.0	0.0	.	158
COX15	1355	ucsc.edu;bcgsc.ca	37	10	101487248	101487248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	COX15,NS,carcinoma,-2	COX15	NM_004376	exon3	c.G345T	p.E115D	CCATTCCTCTTGG	.	38.0	4.0	61.0	0.0	.	227
CTSS	1520	broad.mit.edu;bcgsc.ca	37	1	150722588	150722588	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTSS	NM_004079	exon6	c.A687G	p.E229E	AGGAAGTTCAGTG	.	75.0	7.0	46.0	0.0	.	90
CTSZ	1522	ucsc.edu;bcgsc.ca	37	20	57570753	57570753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTSZ	NM_001336	exon6	c.A863G	p.Y288C	AGGTTGTATCTGG	.	63.0	5.0	72.0	0.0	.	226
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99247719	99247721	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYP3A5	NM_000777	exon12	c.1388_1390del	p.463_464del	GTTTGAAGGAGAA	.	172.0	69.0	192.0	0.0	.	90
DDX41	51428	ucsc.edu;bcgsc.ca	37	5	176939387	176939387	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX41	NM_016222	exon15	c.G1557T	p.R519R	GCCAATCCGGTGT	.	25.0	4.0	40.0	0.0	.	226
DEF6	50619	ucsc.edu;bcgsc.ca	37	6	35289121	35289121	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DEF6	NM_022047	exon11	c.G1830T	p.G610G	TGGTGGGGATGAG	.	29.0	4.0	41.0	0.0	.	227
DEFA6	1671	ucsc.edu;bcgsc.ca	37	8	6782381	6782381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DEFA6	NM_001926	exon2	c.T262C	p.C88R	CAGTGCAGGTCCC	.	52.0	5.0	53.0	0.0	.	90
DENND4C	55667	broad.mit.edu;bcgsc.ca	37	9	19360349	19360349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DENND4C	NM_017925	exon28	c.G5121T	p.Q1707H	TGATCAGGTGATT	.	168.0	8.0	117.0	1.0	.	92
DHODH	1723	ucsc.edu;bcgsc.ca	37	16	72045982	72045982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHODH	NM_001361	exon2	c.G55A	p.G19R	CTGGGGGGAGGAG	.	25.0	4.0	37.0	0.0	.	227
DHX38	9785	ucsc.edu;bcgsc.ca	37	16	72142233	72142233	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX38	NM_014003	exon22	c.C3072A	p.S1024S	TTACTCCACCATC	.	40.0	6.0	68.0	0.0	.	227
DHX9	1660	ucsc.edu;bcgsc.ca	37	1	182849641	182849641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX9	NM_001357	exon22	c.C2522T	p.A841V	TTGATGCATTAGA	.	40.0	5.0	79.0	0.0	.	92
DISP2	85455	ucsc.edu;bcgsc.ca	37	15	40659780	40659780	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DISP2	NM_033510	exon8	c.G1467T	p.T489T	GGACACGGTGTAC	.	39.0	5.0	67.0	0.0	.	92
DNAH8	1769	ucsc.edu;bcgsc.ca	37	6	38690904	38690904	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH8	NM_001206927	exon2	c.C319A	p.R107R	TCTTCCCGGAGGT	.	60.0	6.0	41.0	0.0	.	615
DNPH1	10591	ucsc.edu;bcgsc.ca	37	6	43193533	43193533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_006443	exon4	c.G463T	p.D155Y	ATCGATCCAGCAG	.	31.0	5.0	41.0	0.0	.	.
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129141983	129141983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK1	NM_001380	exon31	c.G3134A	p.S1045N	TTTCAAGTGCCAA	.	56.0	6.0	94.0	0.0	.	698
DOCK5	80005	ucsc.edu;bcgsc.ca	37	8	25174644	25174644	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK5	NM_024940	exon14	c.G1440A	p.L480L	GCTCTTGGAGGTG	.	46.0	4.0	48.0	0.0	.	71
DOCK6	57572	ucsc.edu;bcgsc.ca	37	19	11346345	11346345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK6	NM_020812	exon21	c.A2483G	p.H828R	GGGCAGTGACCGC	.	47.0	4.0	49.0	0.0	.	93
DPYSL5	56896	ucsc.edu;bcgsc.ca	37	2	27162930	27162930	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DPYSL5	NM_001253724	exon9	c.C979A	p.R327R	GATCACCGGCCTT	.	69.0	6.0	74.0	0.0	.	92
DUSP27	92235	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096471	167096471	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DUSP27	NM_001080426	exon5	c.C2103A	p.S701S	AACCTCCAACCCC	.	29.0	6.0	38.0	1.0	.	71
DUSP6	1848	ucsc.edu;bcgsc.ca	37	12	89745641	89745641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DUSP6	NM_001946	exon1	c.C176A	p.P59Q	ATGCCCGGGATGG	.	34.0	4.0	47.0	0.0	.	846
DYNLT3	6990	ucsc.edu;bcgsc.ca	37	X	37701140	37701140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DYNLT3	NM_006520	exon3	c.G91T	p.G31C	CACCACCTAAAAC	.	47.0	5.0	95.0	0.0	.	130
EFEMP1	2202	broad.mit.edu;bcgsc.ca	37	2	56104946	56104946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EFEMP1	NM_001039349	exon6	c.C695A	p.P232Q	GAGCCTGGTGTAT	.	86.0	7.0	70.0	1.0	.	520
ELF5	2001	ucsc.edu;bcgsc.ca	37	11	34527177	34527177	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ELF5	NM_198381	exon2	c.A150G	p.T50T	CGCACCTGTCTGA	.	34.0	4.0	28.0	0.0	.	227
EMC8	10328	ucsc.edu;bcgsc.ca	37	16	85832837	85832837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_006067	exon1	c.C65A	p.P22Q	CAGTGCGGGTACT	.	17.0	4.0	38.0	0.0	.	.
EML4	27436	broad.mit.edu;bcgsc.ca	37	2	42490410	42490410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EML4	NM_019063	exon5	c.C605A	p.P202H	CAACACCCAAATT	.	184.0	10.0	149.0	0.0	.	3734
EPHA10	284656	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38192825	38192825	+	Missense_Mutation	SNP	G	G	A	rs34409053		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPHA10	NM_001099439	exon8	c.C1721T	p.S574L	AGGGCCGAGATGG	.	44.0	21.0	45.0	0.0	G|0.991;A|0.009	1246
EPS8	2059	broad.mit.edu;bcgsc.ca	37	12	15784587	15784587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPS8	NM_004447	exon18	c.G1833T	p.M611I	ATACTCCATCCTT	.	81.0	6.0	84.0	0.0	.	94
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212615384	212615384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERBB4	NM_001042599	exon5	c.C602A	p.T201K	TTTTCTGTGGGTC	.	51.0	24.0	32.0	0.0	.	1461
ESR2	2100	ucsc.edu;bcgsc.ca	37	14	64749351	64749351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ESR2	NM_001214902	exon1	c.C353A	p.P118H	TTTACAGGTAAGG	.	26.0	4.0	28.0	0.0	.	611
EXOC3L2	90332	ucsc.edu;bcgsc.ca	37	19	45716529	45716529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EXOC3L2	NM_138568	exon10	c.T1028C	p.L343P	AGTTCCAGGTCCC	.	58.0	5.0	63.0	0.0	.	91
FAM124A	220108	ucsc.edu;bcgsc.ca	37	13	51855053	51855053	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM124A	NM_145019	exon5	c.C1410T	p.P470P	TGCACCCAGTAGG	.	31.0	4.0	32.0	0.0	.	90
FAT3	120114	ucsc.edu;bcgsc.ca	37	11	92087568	92087568	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT3	NM_001008781	exon1	c.A2290T	p.T764S	CTATTTACAATAT	.	39.0	4.0	59.0	0.0	.	73
FBN2	2201	ucsc.edu;bcgsc.ca	37	5	127712541	127712541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBN2	NM_001999	exon14	c.G1855T	p.D619Y	ATTCATCATGATC	.	46.0	4.0	37.0	0.0	.	146
FBN3	84467	ucsc.edu;bcgsc.ca	37	19	8154496	8154496	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBN3	NM_032447	exon50	c.C6309A	p.T2103T	TCCATCGGTGTTG	.	41.0	4.0	52.0	0.0	.	100
FERMT1	55612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6096555	6096555	+	Missense_Mutation	SNP	C	C	A	rs184921922	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FERMT1	NM_017671	exon3	c.G288T	p.M96I	GCGCAGCATTTTA	.	57.0	10.0	47.0	0.0	C|0.999;T|0.001	495
FHOD3	80206	ucsc.edu;bcgsc.ca	37	18	34289290	34289290	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FHOD3	NM_025135	exon15	c.G1944A	p.S648S	CGTCTCGTCCTCC	.	47.0	4.0	72.0	0.0	.	139
FICD	11153	ucsc.edu;bcgsc.ca	37	12	108912413	108912413	+	Missense_Mutation	SNP	C	C	A	rs139799946	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FICD	NM_007076	exon3	c.C538A	p.R180S	GTCAACCGCGATC	.	43.0	4.0	57.0	0.0	C|1.000;T|0.000	68
FLNA	2316	ucsc.edu;bcgsc.ca	37	X	153592415	153592415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FLNA	NM_001456	exon15	c.T2255C	p.V752A	ATGCTGACGCCTC	.	31.0	4.0	45.0	0.0	.	599
FMNL2	114793	ucsc.edu;bcgsc.ca	37	2	153475551	153475551	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FMNL2	NM_052905	exon14	c.G1506A	p.L502L	CACATTGTCCATG	.	47.0	4.0	48.0	0.0	.	516
FSCN1	6624	ucsc.edu;bcgsc.ca	37	7	5643635	5643635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FSCN1	NM_003088	exon4	c.T1253C	p.F418S	TGGAGTTCAACGA	.	33.0	4.0	27.0	0.0	.	91
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160972296	160972296	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GABRB2	NM_021911	exon4	c.C174T	p.P58P	CACGGGGGGACCT	.	60.0	26.0	53.0	0.0	.	91
GIMAP7	168537	ucsc.edu;bcgsc.ca	37	7	150217195	150217195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GIMAP7	NM_153236	exon2	c.A133G	p.K45E	GTTACCAAGAACT	.	44.0	4.0	34.0	0.0	.	228
GJA1	2697	broad.mit.edu;bcgsc.ca	37	6	121768405	121768405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GJA1	NM_000165	exon2	c.G412T	p.G138C	AAGTACGGTATTG	.	109.0	9.0	125.0	1.0	.	92
GLYR1	84656	ucsc.edu;bcgsc.ca	37	16	4861199	4861199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLYR1	NM_032569	exon15	c.C1559A	p.P520Q	GGAGTCGGATGGT	.	49.0	4.0	61.0	0.0	.	90
GMPPA	29926	ucsc.edu;bcgsc.ca	37	2	220371496	220371496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GMPPA	NM_205847	exon13	c.C1239A	p.S413R	CCGAAGCTTCACC	.	22.0	6.0	36.0	0.0	.	90
GORASP1	64689	ucsc.edu;bcgsc.ca	37	3	39140363	39140363	+	Missense_Mutation	SNP	A	A	G	rs140610726	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GORASP1	NM_031899	exon8	c.T938C	p.I313T	AGAGAAATTCCCG	.	47.0	4.0	74.0	0.0	A|0.999;C|0.000	92
GUCA1B	2979	ucsc.edu;bcgsc.ca	37	6	42152641	42152641	+	Missense_Mutation	SNP	C	C	T	rs141880594		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GUCA1B	NM_002098	exon4	c.G515A	p.R172Q	TTGTCCCGACGGG	.	32.0	4.0	41.0	1.0	C|1.000;T|0.000	92
GUCY2C	2984	ucsc.edu;bcgsc.ca	37	12	14827660	14827660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GUCY2C	NM_004963	exon8	c.G983A	p.G328E	AGGATTCCATTCA	.	47.0	4.0	45.0	0.0	.	338
HADHB	3032	ucsc.edu;bcgsc.ca	37	2	26502181	26502181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HADHB	NM_000183	exon9	c.C809A	p.P270Q	AAGTACCAGGTGA	.	32.0	4.0	30.0	0.0	.	154
HCRTR1	3061	ucsc.edu;bcgsc.ca	37	1	32092400	32092400	+	Missense_Mutation	SNP	G	G	T	rs202193411	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HCRTR1	NM_001525	exon9	c.G1097T	p.R366L	AATTCCGGGAGCA	.	42.0	4.0	49.0	1.0	G|0.999;A|0.000	523
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33358704	33358704	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HIPK3	NM_001048200	exon4	c.A1305T	p.K435N	TTGCAAAGAAACA	.	72.0	33.0	57.0	0.0	.	336
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33358706	33358706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HIPK3	NM_001048200	exon4	c.A1307C	p.E436A	GCAAAGAAACAGA	.	71.0	32.0	56.0	0.0	.	336
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71148962	71148962	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HK1	NM_033498	exon17	c.C1957T	p.L653L	TTTGACCTGGACG	.	57.0	46.0	162.0	0.0	.	252
HM13	81502	ucsc.edu;bcgsc.ca	37	20	30137135	30137135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HM13	NM_178581	exon6	c.G666T	p.W222C	CTTCTGGGTGAGT	.	33.0	4.0	31.0	0.0	.	153
HYAL1	3373	ucsc.edu;bcgsc.ca	37	3	50340219	50340219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HYAL1	NM_033159	exon2	c.G169T	p.D57Y	CCACATCGAAGAC	.	44.0	4.0	61.0	0.0	.	278
HYDIN	54768	broad.mit.edu;bcgsc.ca	37	16	70841965	70841965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HYDIN	NM_001270974	exon86	c.A14884G	p.T4962A	AGTCGGTCTGAAA	.	28.0	6.0	56.0	0.0	.	92
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81589305	81589305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IL16	NM_001172128	exon13	c.G1939A	p.E647K	CCACAGGAAGACA	.	46.0	22.0	65.0	0.0	.	653
ITGA8	8516	ucsc.edu;bcgsc.ca	37	10	15658547	15658547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGA8	NM_003638	exon14	c.G1411T	p.G471C	ATGCACCCACAAT	.	52.0	5.0	50.0	0.0	.	230
ITGB7	3695	ucsc.edu;bcgsc.ca	37	12	53589937	53589937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGB7	NM_000889	exon7	c.C863T	p.S288L	TCGTCTGAAGTGA	.	31.0	4.0	46.0	1.0	.	231
KANSL1	284058	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	44249095	44249095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001193466	exon2	c.A415G	p.R139G	TGGTTCTAAGATT	.	38.0	10.0	34.0	0.0	.	.
KBTBD12	166348	ucsc.edu;bcgsc.ca	37	3	127682104	127682104	+	Missense_Mutation	SNP	C	C	A	rs149769275	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KBTBD12	NM_207335	exon4	c.C1565A	p.P522Q	ACAACCCAGATGG	.	48.0	4.0	42.0	0.0	C|1.000;T|0.000	23
KCNMA1	3778	ucsc.edu;bcgsc.ca	37	10	79010979	79010979	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNMA1	NM_002247	exon3	c.T576C	p.L192L	TATTACAAGTGCA	.	33.0	6.0	54.0	0.0	.	93
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36763242	36763242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNU1	NM_001031836	exon20	c.G2026A	p.V676I	CATGATGTAGAAC	.	36.0	4.0	34.0	0.0	.	23
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36776402	36776402	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNU1	NM_001031836	exon23	c.C2583A	p.I861I	CCCTATCCTTACT	.	44.0	5.0	37.0	0.0	.	23
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75139644	75139644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0317	NM_001039479	exon11	c.A1312G	p.T438A	GAAAGGTCTCAGA	.	52.0	4.0	46.0	0.0	.	525
KIAA1211L	343990	ucsc.edu;bcgsc.ca	37	2	99443572	99443572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_207362	exon6	c.A601G	p.N201D	GGCTGTTGTCTGA	.	34.0	4.0	46.0	0.0	.	.
KIAA1804	0	ucsc.edu;bcgsc.ca	37	1	233489583	233489583	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1804	NM_032435	exon3	c.C1017A	p.T339T	GCTCACCGGAGAA	.	54.0	5.0	83.0	0.0	.	523
KIAA1958	158405	ucsc.edu;bcgsc.ca	37	9	115337283	115337283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1958	NM_133465	exon2	c.T923C	p.M308T	TGGCCATGCAAAT	.	28.0	4.0	43.0	0.0	.	91
KIF20B	9585	ucsc.edu;bcgsc.ca	37	10	91469127	91469127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF20B	NM_016195	exon4	c.A260G	p.Q87R	ATTCACAGACTGT	.	42.0	4.0	87.0	0.0	.	93
KIF20B	9585	ucsc.edu;bcgsc.ca	37	10	91469218	91469218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF20B	NM_016195	exon4	c.G351T	p.K117N	TTCCAAGGTAAAA	.	42.0	4.0	70.0	0.0	.	93
KRT76	51350	ucsc.edu;bcgsc.ca	37	12	53169279	53169279	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KRT76	NM_015848	exon2	c.C708A	p.S236S	GATGTAGGATTCA	.	49.0	5.0	53.0	0.0	.	154
LAS1L	81887	ucsc.edu;bcgsc.ca	37	X	64744886	64744886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LAS1L	NM_031206	exon8	c.C1001A	p.P334H	AATGTGGGGACAA	.	37.0	4.0	71.0	0.0	.	196
LINGO3	645191	ucsc.edu;bcgsc.ca	37	19	2290770	2290770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001101391	exon2	c.A1006G	p.S336G	AGGTGCTCTCCTC	.	47.0	5.0	47.0	0.0	.	.
LONRF3	79836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118148215	118148215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LONRF3	NM_001031855	exon10	c.G2020A	p.V674I	AACTGTGTCTATC	.	127.0	60.0	89.0	0.0	.	289
LRP1	4035	ucsc.edu;bcgsc.ca	37	12	57548458	57548458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRP1	NM_002332	exon8	c.C1201A	p.R401S	AAGGGCCGCCAGA	.	30.0	4.0	42.0	0.0	.	596
LRRC10	376132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70004150	70004150	+	Missense_Mutation	SNP	G	G	T	rs201257055	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC10	NM_201550	exon1	c.C469A	p.R157S	GCAAACGCAGGGC	.	43.0	18.0	35.0	1.0	G|0.999;A|0.001	514
LRRC45	201255	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79984801	79984801	+	Missense_Mutation	SNP	C	C	T	rs202017922		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC45	NM_144999	exon6	c.C688T	p.R230W	CAGGACCGGCTCA	.	31.0	8.0	24.0	0.0	C|0.993;T|0.007	91
LTBP3	4054	ucsc.edu;bcgsc.ca	37	11	65314942	65314942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LTBP3	NM_001130144	exon14	c.G2075T	p.R692L	TTGAGCCGGTAGC	.	51.0	5.0	37.0	0.0	.	91
LZIC	84328	ucsc.edu;bcgsc.ca	37	1	9992006	9992006	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LZIC	NM_032368	exon6	c.T457C	p.L153L	CTGACAAGAAGGC	.	43.0	4.0	38.0	0.0	.	90
MAEA	10296	ucsc.edu;bcgsc.ca	37	4	1321427	1321427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAEA	NM_001017405	exon5	c.T592C	p.F198L	CTGGAGTTCAGCC	.	21.0	4.0	32.0	0.0	.	91
MAGI2	9863	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	77649287	77649287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAGI2	NM_012301	exon22	c.C3713A	p.P1238H	GGGGCGGGTTCGT	.	16.0	6.0	26.0	0.0	.	461
MAN2B2	23324	ucsc.edu;bcgsc.ca	37	4	6611693	6611693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAN2B2	NM_015274	exon13	c.C2175A	p.S725R	AAACAGCCAGCAG	.	36.0	4.0	98.0	0.0	.	92
MAP1A	4130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43816465	43816465	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAP1A	NM_002373	exon4	c.T2794C	p.L932L	AAAGGCTTGTCTG	.	30.0	7.0	36.0	0.0	.	141
MCHR1	2847	ucsc.edu;bcgsc.ca	37	22	41077417	41077417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MCHR1	NM_005297	exon2	c.A754G	p.R252G	TATGCCAGACTCA	.	38.0	4.0	53.0	0.0	.	90
MEF2A	4205	ucsc.edu;bcgsc.ca	37	15	100230447	100230447	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEF2A	NM_005587	exon8	c.G678A	p.G226G	CCCAGGGAATGGA	.	31.0	4.0	35.0	0.0	.	455
METTL1	4234	ucsc.edu;bcgsc.ca	37	12	58163641	58163641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	METTL1	NM_005371	exon3	c.G373T	p.A125S	GAGCTGCGCGTAG	.	45.0	4.0	68.0	0.0	.	492
MEX3B	84206	ucsc.edu;bcgsc.ca	37	15	82336703	82336703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEX3B	NM_032246	exon2	c.C508A	p.R170S	CCACGCGGTAGGG	.	27.0	4.0	33.0	0.0	.	226
MICAL1	64780	ucsc.edu;bcgsc.ca	37	6	109771587	109771587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MICAL1	NM_022765	exon8	c.G1107A	p.M369I	CCGCATCATGCTC	.	41.0	4.0	43.0	0.0	.	154
MIEN1	84299	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	37886014	37886014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032339	exon3	c.G188A	p.G63D	AAGGCACCTGGTA	.	32.0	8.0	35.0	0.0	.	.
MIR888	100126306	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	145076315	145076315	+	RNA	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	TCCTTCACCCAAA	.	54.0	28.0	78.0	1.0	.	.
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36216120	36216120	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MLL4	NM_014727	exon11	c.3529-1G>C	.	CCCCCAGGAGGAT	.	30.0	15.0	30.0	0.0	.	697
MPHOSPH9	10198	ucsc.edu;bcgsc.ca	37	12	123647656	123647656	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MPHOSPH9	NM_022782	exon16	c.A2478G	p.P826P	AGTCACTGGTGTT	.	32.0	4.0	30.0	0.0	.	514
MPHOSPH9	10198	ucsc.edu;bcgsc.ca	37	12	123699320	123699320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MPHOSPH9	NM_022782	exon3	c.C602A	p.P201Q	GCATTTGGAGTTT	.	42.0	4.0	46.0	0.0	.	514
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9006378	9006378	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MUC16	NM_024690	exon45	c.C39640G	p.P13214A	ACAGAGGGCCAAC	.	42.0	19.0	48.0	0.0	.	566
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27442787	27442787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO18A	NM_078471	exon12	c.G2122A	p.E708K	ACAGCTCCTCCAG	.	34.0	15.0	54.0	0.0	.	22
MYO1D	4642	ucsc.edu;bcgsc.ca	37	17	31075959	31075959	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO1D	NM_015194	exon12	c.T1533C	p.D511D	CACTACATCGCCT	.	55.0	5.0	49.0	0.0	.	137
MYO9B	4650	ucsc.edu;bcgsc.ca	37	19	17317097	17317097	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO9B	NM_001130065	exon33	c.C5298T	p.A1766A	CCACGCCATCACA	.	33.0	5.0	60.0	0.0	.	67
MYOF	26509	ucsc.edu;bcgsc.ca	37	10	95191205	95191205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYOF	NM_133337	exon4	c.A305G	p.K102R	ATCAGCTTGTACG	.	33.0	4.0	65.0	0.0	.	93
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35731313	35731313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NBEA	NM_015678	exon21	c.A2750G	p.Y917C	TGGTCTACAATAT	.	116.0	109.0	111.0	1.0	.	144
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52513791	52513791	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NISCH	NM_001276293	exon12	c.A1329G	p.T443T	GACCACAGAGAAG	.	91.0	42.0	74.0	0.0	.	93
NLGN3	54413	ucsc.edu;bcgsc.ca	37	X	70389119	70389119	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NLGN3	NM_181303	exon8	c.G1719A	p.P573P	CAAGCCGGTCCCC	.	37.0	4.0	40.0	0.0	.	131
NLRP5	126206	broad.mit.edu;bcgsc.ca	37	19	56545050	56545050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NLRP5	NM_153447	exon9	c.C2590A	p.P864T	AAACACCCAAAAT	.	195.0	11.0	175.0	0.0	.	162
NOS2	4843	ucsc.edu;bcgsc.ca	37	17	26099445	26099445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NOS2	NM_000625	exon14	c.G1593T	p.K531N	CATTGTCTTGCGC	.	46.0	4.0	58.0	0.0	.	156
NPAS4	266743	ucsc.edu;bcgsc.ca	37	11	66190697	66190697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPAS4	NM_178864	exon5	c.C802A	p.R268S	CACTACCGCCTGT	.	41.0	4.0	42.0	0.0	.	90
NPAS4	266743	ucsc.edu;bcgsc.ca	37	11	66191182	66191182	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPAS4	NM_178864	exon6	c.C942A	p.I314I	CCCAATCAGGTAA	.	40.0	4.0	39.0	1.0	.	90
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110959033	110959033	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPHP1	NM_207181	exon2	c.T108C	p.A36A	TTCTAGAGCTTCT	.	93.0	42.0	68.0	0.0	.	92
NR3C2	4306	ucsc.edu;bcgsc.ca	37	4	149181131	149181131	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NR3C2	NM_001166104	exon3	c.A1896G	p.E632E	TTTACCTTCCACT	.	57.0	5.0	49.0	0.0	.	154
NUP133	55746	ucsc.edu;bcgsc.ca	37	1	229580661	229580661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP133	NM_018230	exon25	c.G3334T	p.G1112C	ACTTACCATCTTT	.	34.0	4.0	49.0	0.0	.	271
NYAP1	222950	ucsc.edu;bcgsc.ca	37	7	100085902	100085902	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_173564	exon4	c.T558C	p.P186P	CTCTCCTCGAGGG	.	50.0	4.0	48.0	0.0	.	.
OCIAD1	54940	broad.mit.edu;bcgsc.ca	37	4	48862751	48862751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OCIAD1	NM_001168254	exon9	c.A725G	p.N242S	AAGTAAACAAGTA	.	69.0	5.0	118.0	0.0	.	68
OVCH1	341350	broad.mit.edu;bcgsc.ca	37	12	29628067	29628067	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OVCH1	NM_183378	exon14	c.G1527T	p.T509T	TATCACCGTCATG	.	184.0	8.0	135.0	0.0	.	210
PARD3B	117583	ucsc.edu;bcgsc.ca	37	2	205989190	205989190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PARD3B	NM_205863	exon9	c.G1305T	p.E435D	TTTGGAGGTAAGA	.	43.0	4.0	40.0	0.0	.	140
PASK	23178	ucsc.edu;bcgsc.ca	37	2	242066022	242066022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PASK	NM_015148	exon10	c.C2308T	p.P770S	AAGAGGGTGTCTC	.	61.0	5.0	88.0	0.0	.	536
PCBP4	57060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51993962	51993962	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCBP4	NM_033008	exon7	c.G465A	p.V155V	ATCAGGCACCCCA	.	18.0	4.0	24.0	0.0	.	226
PCDHGA12	26025	ucsc.edu;bcgsc.ca	37	5	140810434	140810434	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHGA12	NM_032094	exon1	c.G108T	p.P36P	AGTTCCGGAAGAG	.	52.0	4.0	56.0	0.0	.	27
PDDC1	347862	ucsc.edu;bcgsc.ca	37	11	773565	773565	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDDC1	NM_182612	exon4	c.T312C	p.S104S	GGAGCCACTGCTG	.	45.0	4.0	75.0	0.0	.	90
PEX5	5830	ucsc.edu;bcgsc.ca	37	12	7343827	7343827	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PEX5	NM_001131023	exon4	c.G234T	p.V78V	GTTGGTGGCTGAA	.	45.0	4.0	53.0	0.0	.	91
PFDN2	5202	ucsc.edu;bcgsc.ca	37	1	161071839	161071839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PFDN2	NM_012394	exon3	c.A287G	p.Q96R	CTCACCTGCTCCT	.	45.0	5.0	28.0	0.0	.	90
PHEX	5251	ucsc.edu;bcgsc.ca	37	X	22196426	22196426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHEX	NM_000444	exon14	c.C1519A	p.L507I	AACGTCCTACAAA	.	45.0	4.0	67.0	0.0	.	132
PI16	221476	ucsc.edu;bcgsc.ca	37	6	36926948	36926948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PI16	NM_001199159	exon3	c.G199T	p.A67S	GCCTTCGCCAAGG	.	38.0	4.0	47.0	0.0	.	90
PIGQ	9091	ucsc.edu;bcgsc.ca	37	16	628482	628482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIGQ	NM_148920	exon5	c.T1046C	p.L349P	TCTTCCTCTACCA	.	27.0	4.0	44.0	0.0	.	226
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178916692	178916692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIK3CA	NM_006218	exon2	c.C79A	p.P27T	TTACTACCAAATG	.	80.0	38.0	74.0	0.0	.	27752
PIN1	5300	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9949168	9949168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIN1	NM_006221	exon2	c.G115T	p.G39C	CCCAGCGGCAACA	.	46.0	17.0	55.0	0.0	.	227
PLEKHH2	130271	broad.mit.edu;bcgsc.ca	37	2	43919652	43919652	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLEKHH2	NM_172069	exon4	c.187-1G>T	.	AATTTAGGTACAA	.	122.0	8.0	110.0	0.0	.	92
PPEF2	5470	ucsc.edu;bcgsc.ca	37	4	76809470	76809470	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPEF2	NM_006239	exon6	c.T429C	p.A143A	GTAGCGAGCATGG	.	36.0	4.0	45.0	1.0	.	228
PPP2CA	5515	ucsc.edu;bcgsc.ca	37	5	133536762	133536762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2CA	NM_002715	exon4	c.T490C	p.F164L	GACAGAAGATCTG	.	41.0	4.0	33.0	0.0	.	1085
PPP2CB	5516	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	30643819	30643819	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2CB	NM_001009552	exon7	c.C862T	p.Q288X	CAAATTGAAGGCT	.	38.0	12.0	36.0	0.0	.	658
PPP2R5C	5527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102391540	102391540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2R5C	NM_001161725	exon16	c.C1599A	p.D533E	TCAGGACCCCCAC	.	80.0	36.0	61.0	0.0	.	659
PROKR1	10887	ucsc.edu;bcgsc.ca	37	2	68882573	68882573	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PROKR1	NM_138964	exon2	c.C1047A	p.T349T	CGACACCGTCAAG	.	48.0	5.0	60.0	0.0	.	523
PTCH2	8643	ucsc.edu;bcgsc.ca	37	1	45296615	45296615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	PTCH2,NS,malignant_melanoma,+2	PTCH2	NM_001166292	exon6	c.A718G	p.K240E	GTGCCTTGTCTAG	.	41.0	4.0	61.0	0.0	.	851
PTPN2	5771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	12802149	12802149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPN2	NM_001207013	exon9	c.A929C	p.K310T	CATCGTTTCTAGG	.	98.0	51.0	66.0	0.0	.	652
PTPRG	5793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	61975392	61975392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRG	NM_002841	exon3	c.T284C	p.V95A	CGCGTGTTGGGGA	.	87.0	37.0	81.0	0.0	.	419
QSOX1	5768	ucsc.edu;bcgsc.ca	37	1	180158782	180158782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	QSOX1	NM_002826	exon9	c.T1113A	p.F371L	TTTCTTTAAAACT	.	34.0	4.0	29.0	0.0	.	91
RAB3GAP2	25782	ucsc.edu;bcgsc.ca	37	1	220364460	220364460	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAB3GAP2	NM_012414	exon14	c.C1437T	p.S479S	CTGTGTGCTCCAC	.	49.0	4.0	60.0	0.0	.	90
RASGRP3	25780	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33752434	33752434	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RASGRP3	NM_170672	exon11	c.C1038A	p.A346A	GAATGCCTCTCAC	.	26.0	5.0	19.0	0.0	.	661
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48947605	48947606	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RB1	NM_000321	exon12	c.1192_1193insA	p.E398fs	CCTTCAGAAAATC	.	311.0	276.0	228.0	0.0	.	3784
RELT	84957	ucsc.edu;bcgsc.ca	37	11	73106527	73106527	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RELT	NM_152222	exon11	c.G1284T	p.L428L	CAACCTGGTCATC	.	36.0	4.0	43.0	1.0	.	228
RFPL4A	342931	broad.mit.edu;mdanderson.org	37	19	56274197	56274197	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFPL4A	NM_001145014	exon3	c.C520T	p.R174X	GTGAACCGACAGG	.	268.0	46.0	233.0	0.0	.	68
RNF122	79845	ucsc.edu;bcgsc.ca	37	8	33416214	33416214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF122	NM_024787	exon2	c.C101A	p.P34Q	TTGAGCGGAAGGT	.	45.0	4.0	56.0	0.0	.	226
RSF1	51773	ucsc.edu;bcgsc.ca	37	11	77412597	77412597	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RSF1	NM_016578	exon6	c.C1677A	p.T559T	CGACTCGGTGGAA	.	49.0	5.0	90.0	0.0	.	93
RTEL1	51750	ucsc.edu;bcgsc.ca	37	20	62311205	62311205	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RTEL1	NM_032957	exon13	c.C1113T	p.Y371Y	CAGCTACATCTTT	.	20.0	4.0	30.0	0.0	.	44
SARDH	1757	ucsc.edu;bcgsc.ca	37	9	136561448	136561448	+	Silent	SNP	G	G	A	rs35013479	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SARDH	NM_007101	exon14	c.C1704T	p.A568A	CACAGCGGCGGCC	.	48.0	4.0	49.0	0.0	G|0.985;A|0.015	90
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	18456693	18456693	+	Silent	SNP	T	T	C	rs61733671		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SATB1	NM_002971	exon5	c.A549G	p.Q183Q	CGACCATTGTTCG	.	105.0	41.0	104.0	0.0	T|0.987;C|0.013	228
SCGB2A2	4250	broad.mit.edu;ucsc.edu	37	11	62040428	62040428	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCGB2A2	NM_002411	exon3	c.244-1G>C	.	TTTCTAGCAATTA	.	34.0	16.0	17.0	0.0	.	91
SDCCAG8	10806	ucsc.edu;bcgsc.ca	37	1	243471320	243471320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDCCAG8	NM_006642	exon8	c.G770T	p.C257F	GAACTTGTGAAGA	.	47.0	4.0	70.0	0.0	.	90
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	240575	240575	+	Missense_Mutation	SNP	G	G	T	rs192818312	by1000genomes;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDHA	NM_004168	exon11	c.G1535T	p.R512L	AACTGCGACTCAG	.	157.0	67.0	176.0	0.0	G|0.999;A|0.001	226
SDHAF2	54949	broad.mit.edu;bcgsc.ca	37	11	61205239	61205239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDHAF2	NM_017841	exon2	c.A179G	p.D60G	GAACTGATGAATC	.	76.0	6.0	62.0	0.0	.	92
SEMA3F	6405	ucsc.edu;bcgsc.ca	37	3	50211496	50211496	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEMA3F	NM_004186	exon4	c.A285G	p.A95A	CTGGGCAGCCTCC	.	31.0	4.0	29.0	0.0	.	279
SGSM2	9905	ucsc.edu;bcgsc.ca	37	17	2276333	2276333	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SGSM2	NM_014853	exon16	c.T1875C	p.L625L	TCTGCTTGGCCAC	.	28.0	4.0	52.0	0.0	.	68
SHISA6	388336	ucsc.edu;bcgsc.ca	37	17	11455212	11455212	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SHISA6	NM_207386	exon4	c.896-1G>T	.	TTTTCAGGTGATC	.	43.0	4.0	47.0	0.0	.	67
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77357245	77357245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SHROOM3	NM_020859	exon1	c.A40G	p.T14A	AGTGCCACATTAA	.	88.0	42.0	109.0	0.0	.	93
SLC10A7	84068	ucsc.edu;bcgsc.ca	37	4	147204345	147204345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC10A7	NM_001029998	exon10	c.G846T	p.L282F	CTTACCCAATGTA	.	49.0	5.0	41.0	0.0	.	22
SLC22A24	283238	ucsc.edu;bcgsc.ca	37	11	62848565	62848565	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001136506	exon9	c.C1425A	p.S475S	CCTACCGGACACT	.	46.0	4.0	35.0	0.0	.	.
SLC25A16	8034	ucsc.edu;bcgsc.ca	37	10	70253301	70253301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC25A16	NM_152707	exon5	c.C448T	p.P150S	CAAGAGGGTAAGT	.	44.0	4.0	82.0	0.0	.	90
SLC34A1	6569	ucsc.edu;bcgsc.ca	37	5	176821189	176821189	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC34A1	NM_003052	exon10	c.C1167A	p.I389I	GGTCATCAATACG	.	44.0	4.0	56.0	0.0	.	91
SLC44A3	126969	ucsc.edu;bcgsc.ca	37	1	95332918	95332918	+	Missense_Mutation	SNP	G	G	T	rs142020864	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC44A3	NM_001114106	exon12	c.G1427T	p.R476L	TGTTCCGATGCTG	.	55.0	6.0	58.0	0.0	G|0.999;A|0.001	91
SLC8A1	6546	ucsc.edu;bcgsc.ca	37	2	40657282	40657282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC8A1	NM_001252624	exon1	c.G139T	p.G47C	ATTCACCAGTTTC	.	81.0	8.0	58.0	0.0	.	93
SLIT2	9353	ucsc.edu;bcgsc.ca	37	4	20570613	20570613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLIT2	NM_004787	exon29	c.C3074A	p.P1025Q	TTTGCCCACCTGA	.	37.0	4.0	48.0	0.0	.	521
SNTB2	6645	ucsc.edu;bcgsc.ca	37	16	69279693	69279693	+	Missense_Mutation	SNP	C	C	A	rs200536488	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNTB2	NM_006750	exon2	c.C769A	p.L257I	AGAAACCTAAGCA	.	28.0	4.0	51.0	0.0	C|0.999;T|0.001	90
SNX6	58533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35072633	35072633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNX6	NM_152233	exon6	c.T473G	p.V158G	AGGAACACTTCAT	.	168.0	75.0	176.0	2.0	.	226
SOWAHA	134548	ucsc.edu;bcgsc.ca	37	5	132150924	132150924	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_175873	exon1	c.T1611C	p.P537P	GGGGCCTTTAGCT	.	50.0	5.0	54.0	0.0	.	.
SPAG17	200162	ucsc.edu;bcgsc.ca	37	1	118727771	118727771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPAG17	NM_206996	exon1	c.A10G	p.K4E	CCTTCTTGGGTGC	.	47.0	4.0	46.0	0.0	.	158
SPTA1	6708	broad.mit.edu;bcgsc.ca	37	1	158619678	158619678	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPTA1	NM_003126	exon25	c.G3537T	p.L1179L	ACTGCCCAGCAGC	.	178.0	14.0	89.0	1.0	.	142
SREBF1	6720	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17716721	17716721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SREBF1	NM_001005291	exon19	c.C3265T	p.R1089C	GACTGCGGTCGAG	.	24.0	10.0	28.0	0.0	.	91
ST6GALNAC2	10610	ucsc.edu;bcgsc.ca	37	17	74562309	74562309	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ST6GALNAC2	NM_006456	exon9	c.C1002A	p.S334S	GTGGTCGGAAAAT	.	65.0	6.0	46.0	0.0	.	90
STARD3NL	83930	broad.mit.edu;bcgsc.ca	37	7	38253999	38253999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STARD3NL	NM_032016	exon3	c.G267A	p.M89I	GGTGATGCAGTAT	.	100.0	6.0	71.0	0.0	.	91
STARD5	80765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81615246	81615246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STARD5	NM_181900	exon2	c.G143T	p.G48V	AGGTTCCCTGGAA	.	74.0	43.0	69.0	0.0	.	91
SUCNR1	56670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151598552	151598552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SUCNR1	NM_033050	exon3	c.G221T	p.C74F	TTCTGTGCACCCT	.	162.0	59.0	142.0	0.0	.	711
SUSD5	26032	ucsc.edu;bcgsc.ca	37	3	33195198	33195198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SUSD5	NM_015551	exon5	c.A926G	p.E309G	TCCACCTCCTTTT	.	42.0	5.0	56.0	0.0	.	24
TAF1	6872	broad.mit.edu;bcgsc.ca	37	X	70597452	70597452	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAF1	NM_004606	exon6	c.775-1G>T	.	GTTCTAGGTGTTA	.	228.0	12.0	224.0	0.0	.	900
TBC1D10B	26000	ucsc.edu;bcgsc.ca	37	16	30380803	30380803	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_015527	exon1	c.C702A	p.T234T	AGCTGGGGTCACG	.	22.0	5.0	32.0	0.0	.	.
TEX11	56159	hgsc.bcm.edu;bcgsc.ca	37	X	70053381	70053383	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TEX11	NM_001003811	exon9	c.631_633del	p.211_211del	CCTCATCAACATA	.	173.0	63.0	178.0	0.0	.	178
TFCP2L1	29842	ucsc.edu;bcgsc.ca	37	2	121995248	121995248	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFCP2L1	NM_014553	exon10	c.T954C	p.L318L	GCGGTGAAGCCAC	.	30.0	4.0	39.0	0.0	.	93
TFDP2	7029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	141678612	141678612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFDP2	NM_001178139	exon11	c.G955T	p.G319X	ACATTCCCATCCG	.	60.0	26.0	68.0	0.0	.	226
TFDP2	7029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141678613	141678613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFDP2	NM_001178139	exon11	c.G954T	p.M318I	CATTCCCATCCGC	.	60.0	28.0	71.0	0.0	.	226
THSD7A	221981	broad.mit.edu;bcgsc.ca	37	7	11675947	11675947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	THSD7A	NM_015204	exon2	c.G832T	p.G278W	TCTTCCCGCGTCT	.	140.0	7.0	101.0	0.0	.	71
TKT	7086	ucsc.edu;bcgsc.ca	37	3	53259913	53259913	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TKT	NM_001258028	exon15	c.G1755T	p.V585V	CTCGCCCACTACT	.	36.0	4.0	42.0	0.0	.	92
TMED4	222068	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44621075	44621075	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMED4	NM_182547	exon3	c.G360A	p.R120R	AGCCATCCTGGTA	.	18.0	10.0	25.0	0.0	.	90
TMEM218	219854	hgsc.bcm.edu;ucsc.edu	37	11	124972140	124972140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM218	NM_001258243	exon4	c.G103A	p.G35R	CCATCCCGCGGGG	.	11.0	11.0	25.0	0.0	.	68
TNMD	64102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99854571	99854571	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNMD	NM_022144	exon7	c.C811A	p.R271R	TGCCGTCGAGGCA	.	61.0	18.0	81.0	0.0	.	130
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72189531	72189532	+	Splice_Site	INS	-	-	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNPO1	NM_002270	exon18	c.2143+1->T	.	GTATAGGTATGAA	.	74.0	35.0	81.0	0.0	.	228
TNRC6B	23112	ucsc.edu;bcgsc.ca	37	22	40660919	40660919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNRC6B	NM_001162501	exon5	c.A685G	p.S229G	GAGAAGAGCACTC	.	28.0	4.0	39.0	0.0	.	22
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	51.0	39.0	83.0	0.0	C|1.000;|0.000	70225
TRAM2	9697	ucsc.edu;bcgsc.ca	37	6	52373071	52373071	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRAM2	NM_012288	exon6	c.G516T	p.L172L	TGCGTGCAGCCAG	.	32.0	4.0	23.0	0.0	.	90
TRIM22	10346	ucsc.edu;bcgsc.ca	37	11	5718574	5718574	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIM22	NM_001199573	exon3	c.519+1G>A	.	TGGAAGGCAGGAG	.	50.0	5.0	39.0	0.0	.	90
TRPC6	7225	ucsc.edu;bcgsc.ca	37	11	101342954	101342954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRPC6	NM_004621	exon8	c.C2119A	p.L707I	CATAAAGAACGTA	.	30.0	4.0	57.0	0.0	.	93
TRPM2	7226	ucsc.edu;bcgsc.ca	37	21	45837840	45837840	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRPM2	NM_003307	exon21	c.G3177A	p.T1059T	GCACACGGACCAG	.	19.0	4.0	28.0	0.0	.	92
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3048495	3048495	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TULP3	NM_003324	exon11	c.A1214T	p.Q405L	TCATGCAGTTTGG	.	124.0	51.0	150.0	0.0	.	226
TULP4	56995	bcgsc.ca;mdanderson.org	37	6	158923495	158923495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TULP4	NM_020245	exon13	c.G2800T	p.V934F	AAGAAGGTCCCTC	.	36.0	17.0	43.0	2.0	.	91
UBN1	29855	ucsc.edu;bcgsc.ca	37	16	4925031	4925031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBN1	NM_001079514	exon15	c.A2620G	p.K874E	TCTCACAAGACCC	.	20.0	4.0	17.0	0.0	.	92
USH2A	7399	ucsc.edu;bcgsc.ca	37	1	216462747	216462747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USH2A	NM_007123	exon11	c.A1846G	p.N616D	CACAGTTCCTTCC	.	38.0	4.0	57.0	0.0	.	115
VPS51	738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64878964	64878964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_013265	exon10	c.C2254G	p.L752V	CACTTGCTGCTGG	.	73.0	28.0	83.0	0.0	.	.
VWA3A	146177	ucsc.edu;bcgsc.ca	37	16	22132937	22132937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWA3A	NM_173615	exon14	c.A1355G	p.E452G	TCCATGAGGTAAT	.	47.0	4.0	51.0	0.0	.	1
VWA5A	4013	ucsc.edu;bcgsc.ca	37	11	124013226	124013226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWA5A	NM_014622	exon16	c.G2101T	p.A701S	GATCTAGCCAAGA	.	42.0	4.0	68.0	0.0	.	92
VWF	7450	broad.mit.edu;bcgsc.ca	37	12	6161738	6161738	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWF	NM_000552	exon16	c.A2157G	p.E719E	GATGTCTTCTGGC	.	66.0	5.0	115.0	0.0	.	163
WDR78	79819	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	67292730	67292730	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR78	NM_024763	exon16	c.2113-1G>A	.	TGGACCCTAGAAA	.	183.0	83.0	159.0	1.0	.	92
WDR90	197335	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	712780	712780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR90	NM_145294	exon34	c.C4247T	p.T1416M	CGGGCACGCTGTG	.	31.0	11.0	49.0	0.0	.	92
XPNPEP2	7512	ucsc.edu;bcgsc.ca	37	X	128896688	128896688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	XPNPEP2	NM_003399	exon19	c.A1682T	p.D561V	ATAAGGATGGAGA	.	33.0	4.0	44.0	0.0	.	130
ZBTB40	9923	ucsc.edu;bcgsc.ca	37	1	22839460	22839460	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZBTB40	NM_001083621	exon13	c.T2505C	p.P835P	GAAGCCTTTCTCC	.	40.0	5.0	24.0	0.0	.	91
ZDHHC16	84287	broad.mit.edu;bcgsc.ca	37	10	99213323	99213323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZDHHC16	NM_198043	exon6	c.G593T	p.R198L	ACCATCGGTACTT	.	97.0	8.0	194.0	0.0	.	91
ZFP36	7538	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39899108	39899108	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFP36	NM_003407	exon2	c.C768A	p.C256X	CTGTTGCCCCTCC	.	67.0	24.0	71.0	1.0	.	227
ZFYVE1	53349	ucsc.edu;bcgsc.ca	37	14	73460001	73460001	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFYVE1	NM_021260	exon4	c.T1053C	p.P351P	GGCTTCAGGGAAA	.	41.0	4.0	55.0	0.0	.	91
ZNF518A	9849	broad.mit.edu;ucsc.edu	37	10	97918109	97918109	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF518A	.	.	.	.	AACAACCAATTAG	.	53.0	7.0	68.0	0.0	.	23
ZNF546	339327	ucsc.edu;bcgsc.ca	37	19	40520384	40520384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF546	NM_178544	exon7	c.C1207T	p.H403Y	GTTCAACATCAGA	.	43.0	4.0	45.0	0.0	.	155
ZNF638	27332	ucsc.edu;bcgsc.ca	37	2	71577282	71577282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF638	NM_014497	exon2	c.G1198A	p.D400N	CATGCTGATGCCC	.	37.0	4.0	48.0	0.0	.	94
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88963115	88963115	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF804B	NM_181646	exon4	c.A819G	p.T273T	AGATACACACCTT	.	109.0	54.0	119.0	0.0	.	101
ZRANB3	84083	ucsc.edu;bcgsc.ca	37	2	136029433	136029433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZRANB3	NM_032143	exon10	c.A1111G	p.S371G	AAACACTTCCATC	.	37.0	4.0	31.0	0.0	.	658
