Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	69741794	69741794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	AAK1	NM_014911	exon13	c.C1585A	p.Q529K	AATTCTGCATTAG	.	73.0	5.0	65.0	0.0	.	333
AARS	16	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70299543	70299543	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	AARS	NM_001605	exon10	c.T1245C	p.Y415Y	GGTGTCATAGAGG	.	43.0	32.0	127.0	0.0	.	91
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1052055	1052055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ABCA7	NM_019112	exon22	c.G3077A	p.R1026H	TCCTGCGCCGTCA	.	49.0	21.0	61.0	0.0	.	98
ABLIM2	84448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8031435	8031435	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ABLIM2	NM_001130087	exon12	c.C1149T	p.S383S	CCCGAGGCTAACC	.	91.0	23.0	101.0	0.0	.	47
ACAD8	27034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134131002	134131002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ACAD8	NM_014384	exon7	c.A770G	p.N257S	TGGCCAACAGAAT	.	119.0	29.0	112.0	0.0	.	90
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195013010	195013010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ACAP2	NM_012287	exon19	c.T1937A	p.I646N	GCCTGAATAAGTG	.	108.0	39.0	218.0	0.0	.	136
AGXT	189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241813413	241813413	+	Missense_Mutation	SNP	C	C	T	rs180177249		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	AGXT	NM_000030	exon6	c.C614T	p.S205L	TGTACTCGGGCTC	.	45.0	22.0	41.0	0.0	.	90
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135715921	135715921	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	AHI1	NM_001134832	exon22	c.T3102G	p.T1034T	GGTCTGAGTGAAA	.	107.0	36.0	134.0	0.0	.	227
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41547821	41547821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ANK1	NM_001142446	exon34	c.T4151A	p.L1384Q	TTGCGCAGAAACG	.	79.0	37.0	107.0	0.0	.	716
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241463387	241463387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ANKMY1	NM_016552	exon7	c.A1480T	p.S494C	GCAAGCTGTGGGA	.	63.0	18.0	63.0	0.0	.	90
ARHGAP31	57514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	119120710	119120710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ARHGAP31	NM_020754	exon10	c.G1111A	p.G371S	ACCACCGGTGGAT	.	143.0	57.0	199.0	1.0	.	92
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36269405	36269405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ARHGAP33	NM_052948	exon5	c.C310T	p.R104C	GACTTTCGTTCCC	.	38.0	14.0	57.0	0.0	.	229
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27102066	27102066	+	Splice_Site	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ARID1A	NM_139135	exon19	c.4343-2A>T	.	TATTTCAGGAACC	.	30.0	20.0	45.0	0.0	.	584
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23244758	23244758	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ARMC3	NM_173081	exon4	c.C189T	p.L63L	AACCCTCCTTGAA	.	171.0	88.0	213.0	0.0	.	90
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23759654	23759654	+	Missense_Mutation	SNP	C	C	T	rs199574094		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ASAP3	NM_017707	exon22	c.G2239A	p.E747K	CACTCTCGCCCTG	.	52.0	23.0	74.0	0.0	C|0.999;T|0.000	155
ASB15	142685	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	123269106	123269106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ASB15	NM_080928	exon8	c.C1058T	p.A353V	AGACTGCGCTGTA	.	235.0	70.0	214.0	2.0	.	228
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	23980759	23980759	+	Missense_Mutation	SNP	T	T	C	rs201429059		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ATAD2B	NM_017552	exon25	c.A3607G	p.M1203V	TGGTCATAGATAA	.	162.0	49.0	111.0	0.0	.	68
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	89998055	89998055	+	Silent	SNP	G	G	A	rs112647159		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ATP2B1	NM_001001323	exon15	c.C2511T	p.S837S	AACAATGCTTGTA	.	135.0	56.0	187.0	0.0	G|0.500;A|0.500	516
B3GAT2	135152	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	71665601	71665601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	B3GAT2	NM_080742	exon1	c.C532A	p.P178T	CGCCGGGCTGCGC	.	129.0	38.0	113.0	1.0	.	93
BCAS3	54828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59445783	59445783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	BCAS3	NM_001099432	exon24	c.G2566A	p.E856K	ACGGAGGAGGGCC	.	81.0	18.0	78.0	0.0	.	495
BPIFA1	51297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31828158	31828158	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_016583	exon5	c.548delC	p.S183fs	CCCATTCCCCTGG	.	74.0	17.0	79.0	0.0	.	.
C12orf52	84934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113629261	113629261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	C12orf52	NM_032848	exon4	c.G449T	p.G150V	CCAGGGGTAGCCA	.	46.0	16.0	59.0	0.0	.	90
C17orf47	284083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56620661	56620661	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	C17orf47	NM_001038704	exon1	c.T887A	p.L296H	TTATGAAGAGACT	.	189.0	55.0	169.0	0.0	.	135
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47722400	47722400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	C21orf58	NM_058180	exon7	c.A812T	p.Q271L	CCTACCTGCAGGG	.	81.0	57.0	163.0	0.0	.	91
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181701627	181701627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CACNA1E	NM_001205293	exon20	c.C2405A	p.A802E	AGGAGGCGCCGAC	.	188.0	57.0	170.0	0.0	.	95
CACNG8	59283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54485674	54485674	+	Silent	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CACNG8	NM_031895	exon4	c.G849T	p.P283P	CGAGCCGTCGCCG	.	26.0	9.0	22.0	0.0	.	90
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2951897	2951897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CARD11	NM_032415	exon23	c.A3053G	p.Q1018R	GTCTTCTGCCTTC	.	108.0	43.0	84.0	0.0	.	870
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3686347	3686347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CCDC27	NM_152492	exon11	c.C1744A	p.L582I	TCACAGCTCGAGA	.	74.0	26.0	74.0	0.0	.	91
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6292577	6292577	+	Missense_Mutation	SNP	C	C	T	rs201876764		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CCKBR	NM_176875	exon5	c.C1148T	p.A383V	CCTCGGCCTGTGT	.	97.0	30.0	94.0	0.0	.	574
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	65016064	65016064	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	CDH11,NS,carcinoma,-1	CDH11	NM_001797	exon8	c.C1140T	p.P380P	CATAGGGGGCTCA	.	58.0	43.0	125.0	0.0	.	852
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63530135	63530135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CDH7	NM_004361	exon11	c.T1846A	p.C616S	CTCGCCTGTGTCT	.	64.0	28.0	99.0	0.0	.	94
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176016107	176016107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CDHR2	NM_017675	exon22	c.2932delG	p.G978fs	AAGGACGGGGCCA	.	112.0	23.0	95.0	0.0	.	70
CDKN1C	1028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	2906437	2906437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CDKN1C	NM_000076	exon1	c.G283A	p.V95M	CCTGCACCGTCTC	.	54.0	17.0	52.0	0.0	.	838
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105349414	105349414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_001112726	exon8	c.G620C	p.G207A	TCCACGGCTTCCG	.	26.0	13.0	55.0	0.0	.	.
CFI	3426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110685711	110685711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CFI	NM_000204	exon3	c.T464G	p.L155R	AGGTCAAGGCAGG	.	65.0	32.0	60.0	0.0	.	90
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61769252	61769252	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CHD7	NM_017780	exon34	c.A7413G	p.S2471S	TGTCTCAACACCA	.	140.0	70.0	153.0	0.0	.	141
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143043750	143043750	+	Missense_Mutation	SNP	A	A	T	rs199610988	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CLCN1	NM_000083	exon19	c.A2363T	p.Q788L	CAACCCAGGTGAG	.	40.0	10.0	31.0	0.0	A|0.999;C|0.001	156
CNGA4	1262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6261357	6261357	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CNGA4	NM_001037329	exon4	c.C333T	p.R111R	CGTTCGCACCTGG	.	75.0	23.0	75.0	0.0	.	91
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17309125	17309125	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CNTLN	NM_017738	exon8	c.A1216T	p.T406S	AGTGTTACTAATC	.	368.0	153.0	509.0	0.0	.	91
COL26A1	136227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101176396	101176396	+	RNA	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	.	.	.	.	ACATGAGTGAGCG	.	44.0	10.0	55.0	0.0	.	.
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130285713	130285713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	COL6A6	NM_001102608	exon4	c.T1450A	p.W484R	GACAGCTGGGACT	.	90.0	36.0	129.0	0.0	.	76
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70981793	70981793	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	COL9A1	NM_001851	exon14	c.1066-2A>T	.	CGGCCCTAAAAGA	.	388.0	113.0	393.0	0.0	.	94
CPSF2	53981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92609350	92609350	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CPSF2	NM_017437	exon9	c.A852G	p.V284V	TTAGGTAGAATGG	.	165.0	65.0	207.0	0.0	.	92
CRADD	8738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94243784	94243784	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CRADD	NM_003805	exon3	c.A337T	p.S113C	CTCAACAGCTCCC	.	74.0	31.0	92.0	0.0	.	228
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152382364	152382364	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CRNN	NM_016190	exon3	c.A1194T	p.T398T	CGGTACTGTCTCT	.	74.0	16.0	78.0	0.0	.	93
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23548859	23548859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	CST9L	NM_080610	exon1	c.T229C	p.W77R	CCTTCCAGGAATT	.	101.0	25.0	82.0	0.0	.	90
DEAF1	10522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	679715	679715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DEAF1	NM_021008	exon8	c.C1099A	p.Q367K	CGCCCTGGGCCGG	.	29.0	5.0	27.0	0.0	.	90
DIAPH2	1730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	95940062	95940062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DIAPH2	NM_007309	exon1	c.A5C	p.E2A	AGATGGAGCAGCC	.	166.0	73.0	217.0	0.0	.	133
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38158025	38158025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DLEC1	NM_007337	exon28	c.C3938T	p.P1313L	GGCCACCTTTCCC	.	81.0	31.0	96.0	0.0	.	161
DMRTC2	63946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42353305	42353305	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DMRTC2	NM_001040283	exon6	c.736delC	p.P246fs	CAAGGGCCCCCTA	.	67.0	29.0	63.0	0.0	.	90
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84832704	84832704	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DNAH6	NM_001370	exon20	c.A3162T	p.T1054T	CGGCACAGATGAC	.	202.0	71.0	191.0	0.0	.	69
DNAJC2	27000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102953436	102953436	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DNAJC2	NM_014377	exon16	c.G1749A	p.A583A	AGGCACCGCTTCT	.	154.0	57.0	181.0	0.0	.	158
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	111575684	111575684	+	Splice_Site	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DOCK4	NM_014705	exon13	c.978-1G>C	.	TTACACCTATGAA	.	207.0	55.0	207.0	0.0	.	26
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116525912	116525912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DPP10	NM_001178034	exon13	c.T1165A	p.F389I	AAATTCTTTATGA	.	156.0	48.0	182.0	0.0	.	142
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	167096126	167096126	+	Silent	SNP	G	G	C	rs144793075	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	DUSP27	NM_001080426	exon5	c.G1758C	p.L586L	CAGCCTGACAGCC	.	111.0	38.0	92.0	0.0	G|1.000;T|0.000	71
EAF1	85403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15475936	15475936	+	Silent	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	EAF1	NM_033083	exon4	c.T417G	p.P139P	ACCACCTCCACCA	.	75.0	29.0	97.0	0.0	.	90
EFCAB2	84288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	245250660	245250660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	EFCAB2	NM_032328	exon8	c.T487A	p.X163K	GAAAATTAAATGT	.	339.0	79.0	221.0	0.0	.	90
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110897334	110897334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	EGF	NM_001963	exon13	c.A1996T	p.I666F	TCTGTGATTGAAA	.	180.0	108.0	203.0	0.0	.	524
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74191982	74191982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_194278	exon9	c.A2567G	p.Q856R	AGCTTCTGCACCA	.	51.0	20.0	63.0	0.0	.	.
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1192437	1192437	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ERC1	NM_178039	exon3	c.A777C	p.V259V	TTGTGTAGCAGAG	.	70.0	15.0	98.0	0.0	.	660
EVC	2121	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5733299	5733299	+	Missense_Mutation	SNP	G	G	A	rs144897690	byfrequency	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	EVC	NM_153717	exon4	c.G532A	p.V178I	TCCAGCGTCCACT	.	243.0	90.0	229.0	1.0	G|0.997;A|0.003	92
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156590005	156590005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FAM71B	NM_130899	exon2	c.T1271A	p.V424D	TTCCAGACTTCAG	.	95.0	22.0	82.0	0.0	.	96
FANCE	2178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35428340	35428340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FANCE	NM_021922	exon8	c.A1328G	p.E443G	TCTTGGAGCTGCC	.	109.0	32.0	76.0	0.0	.	661
FBN1	2200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48760297	48760297	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FBN1	NM_000138	exon38	c.A4585T	p.T1529S	AGCGGGTATCTAT	.	161.0	65.0	221.0	1.0	.	92
FBXL4	26235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	99374696	99374696	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FBXL4	NM_012160	exon3	c.G169T	p.E57X	CTACTTCTTTGGC	.	86.0	41.0	125.0	0.0	.	227
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121341447	121341447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FBXO40	NM_016298	exon3	c.C1171G	p.P391A	GACCTGCCCAAAT	.	115.0	51.0	159.0	0.0	.	273
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	2904411	2904411	+	Splice_Site	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FKBP4	NM_002014	exon1	c.105+1G>A	.	CTGAAGGTGAGGG	.	135.0	53.0	185.0	0.0	.	226
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29008090	29008090	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FLT1	NM_002019	exon6	c.A679T	p.N227Y	TTGTATTGGCTGC	.	143.0	69.0	213.0	0.0	.	1406
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240286488	240286488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FMN2	NM_020066	exon2	c.T1625C	p.L542P	GAACGCTGTTGGA	.	132.0	35.0	99.0	0.0	.	145
FREM2	341640	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39262723	39262723	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FREM2	NM_207361	exon1	c.A1242C	p.V414V	GGAGGTAGTGGAT	.	89.0	35.0	119.0	1.0	.	100
FSD2	123722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83437679	83437679	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FSD2	NM_001007122	exon9	c.T1506C	p.T502T	CTCCACAGTGTAC	.	75.0	34.0	65.0	0.0	.	90
FZD9	8326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72849306	72849306	+	Silent	SNP	C	C	T	rs144961735		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	FZD9	NM_003508	exon1	c.C969T	p.F323F	CTACTTCGGCATG	.	59.0	18.0	54.0	0.0	C|1.000;T|0.000	1082
G2E3	55632	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31084590	31084590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	G2E3	NM_017769	exon14	c.A1709G	p.E570G	TTTTGGAGAAAAT	.	157.0	62.0	218.0	1.0	.	660
GAK	2580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	887684	887684	+	Nonsense_Mutation	SNP	G	G	T	rs140104121	byfrequency;alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GAK	NM_005255	exon8	c.C855A	p.Y285X	GACCGTGTACTGC	.	123.0	33.0	106.0	0.0	G|0.999;A|0.001	568
GARNL3	84253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130106562	130106562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GARNL3	NM_032293	exon15	c.A1300G	p.K434E	TCACCCAAGTCAG	.	178.0	79.0	230.0	0.0	.	516
GPR141	353345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37780305	37780305	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GPR141	NM_181791	exon1	c.C310G	p.L104V	ACGTTCCTATTCT	.	123.0	36.0	107.0	0.0	.	93
GPR156	165829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119886209	119886209	+	Silent	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GPR156	NM_153002	exon9	c.C2115G	p.A705A	ACTTGGGGCCCGG	.	47.0	16.0	65.0	0.0	.	92
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150349506	150349506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GPR50	NM_004224	exon2	c.C1451A	p.A484D	TCTCTGCTGGCAG	.	57.0	22.0	81.0	0.0	.	176
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89925133	89925133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	GPR98	NM_032119	exon9	c.T1616C	p.L539S	TATCCTTGAGTTT	.	304.0	141.0	190.0	0.0	.	103
HAS2	3037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	122626466	122626466	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HAS2	NM_005328	exon4	c.T1542A	p.V514V	CGTTCCAACAATT	.	115.0	47.0	164.0	2.0	.	236
HAVCR2	84868	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156522415	156522415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HAVCR2	NM_032782	exon5	c.G578T	p.R193L	GAGTCCCGTAAGT	.	169.0	80.0	119.0	1.0	.	90
HEATR4	399671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	73989702	73989702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HEATR4	NM_203309	exon2	c.G155T	p.S52I	TGTGAGCTGAAGA	.	86.0	36.0	125.0	0.0	.	91
HERC2P3	283755	ucsc.edu;bcgsc.ca	37	15	20645799	20645799	+	RNA	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HERC2P3	.	.	.	.	CCACTGCAGGGAG	.	46.0	4.0	65.0	0.0	.	92
HERC6	55008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89329771	89329771	+	Splice_Site	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HERC6	NM_017912	exon11	c.1368+2T>C	.	CCATGGTAATAGC	.	158.0	107.0	402.0	0.0	.	658
HHAT	55733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210591627	210591627	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HHAT	NM_001170587	exon6	c.A817T	p.S273C	ATCTACAGCAGCA	.	186.0	47.0	173.0	0.0	.	92
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75176292	75176292	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HIP1	NM_005338	exon25	c.A2504T	p.Q835L	AGCACCTGAATAG	.	85.0	20.0	81.0	0.0	.	1085
HIST1H2BE	8344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26184113	26184113	+	Silent	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HIST1H2BE	NM_003523	exon1	c.C90G	p.R30R	GAAGCGCAAGCGC	.	160.0	42.0	148.0	0.0	.	90
HMGB2	3148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	174253236	174253236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HMGB2	NM_001130689	exon4	c.G625A	p.E209K	TTTATTCTTCATC	.	138.0	28.0	130.0	0.0	.	650
HPSE2	60495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	100992230	100992230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	HPSE2	NM_001166246	exon2	c.T323A	p.L108H	GGCGAAAGTCCCC	.	227.0	195.0	308.0	0.0	.	91
IL10RA	3587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117860245	117860245	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	IL10RA	NM_001558	exon3	c.A277T	p.S93C	TACCACAGCAATG	.	130.0	39.0	98.0	1.0	.	91
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128249666	128249666	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	IWS1	NM_017969	exon11	c.1930-2A>T	.	GGCAGCTGGGGAA	.	127.0	38.0	113.0	0.0	.	91
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42139617	42139617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	JMJD7-PLA2G4B	NM_005090	exon24	c.A2723G	p.Q908R	AGCTCCAGCCTCG	.	42.0	16.0	60.0	0.0	.	135
KAT2B	8850	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	20156482	20156482	+	Splice_Site	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KAT2B	NM_003884	exon7	c.1150+2T>G	.	AACAGGTAAGTTT	.	83.0	30.0	143.0	0.0	.	228
KCNK3	3777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	26915803	26915803	+	Silent	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KCNK3	NM_002246	exon1	c.G60T	p.L20L	CCTGCTGGTGGGC	.	69.0	20.0	53.0	0.0	.	91
KIAA0226L	80183	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46946076	46946076	+	Missense_Mutation	SNP	C	C	T	rs140036142	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_025113	exon3	c.G535A	p.G179S	AATTACCTTCATC	.	55.0	22.0	76.0	1.0	C|0.995;G|0.005	.
KIAA1191	57179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	175774922	175774922	+	Splice_Site	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KIAA1191	NM_001079685	exon8	c.709+2T>G	.	TGCCTTACCAGAA	.	161.0	44.0	109.0	0.0	.	91
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57963063	57963063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KIF5A	NM_004984	exon10	c.A844T	p.S282C	CGTGACAGCAAAA	.	82.0	35.0	104.0	0.0	.	517
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39311593	39311593	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KIF6	NM_145027	exon23	c.2322-2A>T	.	GGATGCTGGAGGC	.	76.0	28.0	90.0	0.0	.	713
KLHL17	339451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	898282	898282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KLHL17	NM_198317	exon6	c.G1027A	p.V343M	GGGCCTGTGCTTT	.	27.0	12.0	30.0	0.0	.	90
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97512550	97512550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KLHL32	NM_052904	exon5	c.G359T	p.S120I	CGGGCAGTCACCT	.	92.0	33.0	94.0	0.0	.	94
KRT7	3855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52635357	52635357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KRT7	NM_005556	exon5	c.G795T	p.K265N	GGTCAAGGCGCAG	.	57.0	22.0	85.0	0.0	.	90
KRT80	144501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	52579367	52579367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	KRT80	NM_182507	exon2	c.A305T	p.Q102L	AGGGCTTGCACCT	.	14.0	6.0	16.0	0.0	.	226
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136567010	136567010	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	LCT	NM_002299	exon8	c.G2907A	p.L969L	CACCTTCAAAGCT	.	81.0	18.0	108.0	0.0	.	101
LENEP	55891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154966209	154966209	+	Silent	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	LENEP	NM_018655	exon1	c.C126A	p.T42T	GCGGACCCTGAAG	.	61.0	18.0	60.0	0.0	.	68
LEPRE1	64175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43218272	43218272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	LEPRE1	NM_001146289	exon9	c.A1409T	p.Q470L	ACCCGCTGGGAAC	.	108.0	25.0	94.0	0.0	.	94
LRRC4C	57689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	40137430	40137430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	LRRC4C	NM_001258419	exon7	c.C413A	p.T138N	GGGATGGTAGTAA	.	177.0	44.0	153.0	1.0	.	521
MAD1L1	8379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2252879	2252879	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MAD1L1	NM_003550	exon10	c.G954A	p.E318E	CAGTCTCTCCCAG	.	49.0	19.0	46.0	0.0	.	1083
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291161	141291161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MAGEC2	NM_016249	exon3	c.T613A	p.F205I	CACAGAAGTGGTC	.	137.0	60.0	171.0	0.0	.	193
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19284705	19284705	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MAPK7	NM_002749	exon4	c.A1183T	p.I395F	GAGGGCATCCGCC	.	44.0	17.0	95.0	0.0	.	1402
MC4R	4160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	58039130	58039130	+	Silent	SNP	G	G	A	rs142925940		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MC4R	NM_005912	exon1	c.C453T	p.I151I	ATAGAAGATAGTA	.	63.0	20.0	99.0	0.0	G|1.000;A|0.000	522
MDGA1	266727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	37611713	37611713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MDGA1	NM_153487	exon14	c.A2408G	p.Y803C	AACATGTAGTAGC	.	76.0	20.0	63.0	0.0	.	91
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90388402	90388402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MDN1	NM_014611	exon75	c.G12328A	p.E4110K	GCTTCTCCTTCTC	.	107.0	35.0	121.0	0.0	.	100
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131910712	131910712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MED23	NM_015979	exon29	c.C3850A	p.L1284M	TCAGCAGCATGTC	.	142.0	51.0	221.0	0.0	.	24
MERTK	10461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112732991	112732991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MERTK	NM_006343	exon7	c.G1086T	p.M362I	CTGCATGAATGAA	.	141.0	56.0	150.0	0.0	.	1463
MFAP2	4237	hgsc.bcm.edu;broad.mit.edu	37	1	17303663	17303663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MFAP2	NM_002403	exon3	c.T68C	p.L23P	GGGTCCAGGTCAT	.	76.0	4.0	91.0	0.0	.	514
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151873528	151873528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MLL3	NM_170606	exon38	c.C9010G	p.L3004V	TCCCCAGACTGTG	.	154.0	44.0	110.0	0.0	.	1398
MLLT6	4302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36868254	36868254	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MLLT6	NM_005937	exon7	c.G707C	p.R236T	ACGAGAGGGGCCA	.	121.0	55.0	181.0	0.0	.	659
MRPL46	26589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89008827	89008827	+	Missense_Mutation	SNP	G	G	C	rs146169028	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MRPL46	NM_022163	exon2	c.C406G	p.R136G	TTATGCGAGCTCC	.	57.0	22.0	64.0	0.0	G|1.000;A|0.000	90
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9074549	9074549	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MUC16	NM_024690	exon3	c.T12897A	p.I4299I	TGTCTCAATCTCT	.	29.0	23.0	100.0	1.0	.	566
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16682120	16682120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MYO10	NM_012334	exon31	c.C4049T	p.P1350L	GAGTTGGGTCTGA	.	37.0	8.0	27.0	0.0	.	3
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76858873	76858873	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MYO7A	NM_001127179	exon4	c.G162A	p.T54T	CGCAACGCACATC	.	82.0	48.0	91.0	0.0	.	138
MYT1	4661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62837052	62837052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	MYT1	NM_004535	exon6	c.T296A	p.V99E	CTGAGGTGAAGGA	.	103.0	30.0	106.0	1.0	.	704
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45120738	45120738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_001146334	exon5	c.A4382T	p.Y1461F	ACCACATAAGTGT	.	107.0	30.0	100.0	0.0	.	.
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	183866687	183866687	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NCKAP1	NM_205842	exon7	c.T615C	p.H205H	CTTGCTATGGGGT	.	283.0	77.0	252.0	0.0	.	92
NCOR2	9612	broad.mit.edu;mdanderson.org	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	15.0	3.0	12.0	0.0	.	229
NELFB	25920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140160781	140160781	+	Splice_Site	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_015456	exon8	c.1000-2A>G	.	CCCTACAGGACAG	.	94.0	36.0	128.0	0.0	.	.
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	144096937	144096937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NOBOX	NM_001080413	exon6	c.G1067T	p.R356L	TTGGCCCGGCGAT	.	82.0	25.0	90.0	0.0	.	69
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	117655927	117655927	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NOS1	NM_001204218	exon29	c.C4315T	p.R1439X	ACGTTCGCAGGGT	.	144.0	43.0	179.0	0.0	.	154
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89182674	89182674	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NOX4	NM_001143836	exon4	c.A283T	p.R95W	ATCTCCTGGTTCT	.	318.0	107.0	242.0	0.0	.	515
NPSR1	387129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34917718	34917718	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NPSR1	NM_207173	exon9	c.T1056A	p.A352A	GGAGGCTGCGCTA	.	251.0	70.0	232.0	0.0	.	94
NPTX1	4884	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	78450179	78450179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NPTX1	NM_002522	exon1	c.A68T	p.Q23L	AAATCCTGGGCCC	.	40.0	13.0	32.0	0.0	.	90
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131763862	131763862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NUP188	NM_015354	exon35	c.G3898A	p.G1300S	GAGGATGGTGACT	.	30.0	14.0	34.0	0.0	.	207
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3721964	3721964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	NUP98	NM_016320	exon24	c.A3618T	p.L1206F	GTGTTTTAATTTG	.	139.0	34.0	120.0	0.0	.	703
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661505	4661505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR51D1	NM_001004751	exon1	c.T485A	p.L162Q	CTGCCCTGACCAG	.	69.0	24.0	66.0	0.0	.	68
OR51F1	256892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4790465	4790465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR51F1	NM_001004752	exon1	c.T683G	p.L228R	ATTCTGAGGACAG	.	185.0	56.0	167.0	0.0	.	70
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58207528	58207528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR5B12	NM_001004733	exon1	c.T97A	p.Y33N	TGAGGTAGATGAA	.	155.0	40.0	160.0	0.0	.	68
OR5H1	26341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	97851772	97851772	+	Silent	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR5H1	NM_001005338	exon1	c.G231T	p.V77V	CACAGTGACCCCA	.	701.0	250.0	963.0	1.0	.	136
OR6M1	390261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123676307	123676307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR6M1	NM_001005325	exon1	c.A751T	p.S251C	TGTTGCTCCCGTG	.	103.0	34.0	84.0	0.0	.	70
OR8S1	341568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48919696	48919696	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	OR8S1	NM_001005203	exon1	c.A282G	p.V94V	TTCAGTAGAGGGC	.	69.0	29.0	98.0	0.0	.	69
PABPC4L	132430	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	135121211	135121211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_001114734	exon2	c.G1138T	p.V380F	CCTTAACTCTGCT	.	249.0	66.0	241.0	1.0	.	.
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30723268	30723268	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PCDH7	NM_032457	exon1	c.T224A	p.L75Q	AGTACCTGAAGAT	.	61.0	15.0	59.0	0.0	.	229
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140773878	140773878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_014004	exon1	c.C1498T	p.P500S	GGGGCGCCCCTGT	.	184.0	88.0	128.0	0.0	.	.
PCDHGB2	56103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140740665	140740665	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PCDHGB2	NM_018923	exon1	c.A963C	p.A321A	CGAAGCAAAAGAT	.	183.0	39.0	131.0	0.0	.	33
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178494226	178494226	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PDE11A	NM_016953	exon20	c.A2711T	p.K904M	TCCCACTTACTTC	.	243.0	76.0	220.0	0.0	.	93
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	73673351	73673351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PDZRN3	NM_015009	exon1	c.T626G	p.L209R	ATCTGCAGCTCAA	.	15.0	7.0	24.0	0.0	.	232
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73432795	73432795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PDZRN3	NM_015009	exon10	c.C2922A	p.S974R	CTCCTTGCTCCAG	.	44.0	16.0	70.0	0.0	.	232
PEX2	5828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	77895734	77895734	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PEX2	NM_000318	exon4	c.T681A	p.L227L	ACCAGTAAGAGGA	.	65.0	23.0	78.0	0.0	.	91
PEX2	5828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	77895736	77895736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PEX2	NM_000318	exon4	c.C679T	p.L227F	CAGTAAGAGGAAT	.	64.0	22.0	75.0	0.0	.	91
PEX2	5828	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	77895737	77895737	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PEX2	NM_000318	exon4	c.T678A	p.P226P	AGTAAGAGGAATA	.	65.0	23.0	75.0	0.0	.	91
PFKFB1	5207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54982655	54982655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PFKFB1	NM_002625	exon7	c.T569G	p.L190R	TCTTCCAGAACCT	.	78.0	9.0	120.0	0.0	.	131
PFKFB3	5209	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6257273	6257273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PFKFB3	NM_004566	exon3	c.G292T	p.V98F	ATGAAAGTCCGGA	.	40.0	5.0	50.0	0.0	.	117
PGR	5241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	100999049	100999049	+	Silent	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PGR	NM_000926	exon1	c.A753G	p.G251G	GGCTCCTCCTCCA	.	31.0	7.0	41.0	0.0	.	652
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79688417	79688417	+	Silent	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PHIP	NM_017934	exon24	c.G2781C	p.V927V	TTCTCCCACAGCC	.	97.0	47.0	159.0	0.0	.	579
PIP5K1C	23396	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3648626	3648626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PIP5K1C	NM_001195733	exon9	c.A1208T	p.Y403F	CACCTGTAGGACT	.	104.0	48.0	176.0	1.0	.	267
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47886593	47886593	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PKD1L1	NM_138295	exon32	c.A5037T	p.A1679A	GTTCACTGCCTTA	.	327.0	114.0	313.0	0.0	.	145
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51923279	51923279	+	Missense_Mutation	SNP	A	A	T	rs201989004	alternate_allele	TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PKHD1	NM_170724	exon16	c.T1354A	p.Y452N	GGTAGTACATGGC	.	107.0	37.0	52.0	0.0	A|0.999;G|0.000	603
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110471959	110471959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PKHD1L1	NM_177531	exon47	c.A7140C	p.E2380D	GTTTGAAGCAAGA	.	208.0	83.0	278.0	0.0	.	145
PLA2G4E	123745	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	15	42342807	42342807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_001206670	exon1	c.G95C	p.G32A	CTTCTTCCTGACC	.	91.0	44.0	113.0	0.0	.	.
PLD5	200150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242264076	242264076	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PLD5	NM_152666	exon10	c.T1248C	p.F416F	CAGATCAAAAAAT	.	127.0	29.0	91.0	0.0	.	96
PLEKHM1	9842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	43545720	43545720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PLEKHM1	NM_014798	exon5	c.A1163G	p.Q388R	ACAGGCTGCTGTA	.	118.0	39.0	174.0	0.0	.	90
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104206739	104206739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PPP1R13B	NM_015316	exon12	c.C2014T	p.P672S	TGGTGGGGCTGAG	.	32.0	16.0	42.0	0.0	.	227
PPP1R3G	648791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	5086148	5086148	+	Silent	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PPP1R3G	NM_001145115	exon1	c.C429A	p.A143A	CCTGGCCAGCGTG	.	21.0	9.0	23.0	0.0	.	136
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106553643	106553643	+	Silent	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PRDM1	NM_001198	exon5	c.A1608T	p.A536A	CTCAGCAGCGATG	.	122.0	48.0	161.0	0.0	.	862
PRDX4	10549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23693213	23693213	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PRDX4	NM_006406	exon3	c.C466G	p.H156D	TTTACCCATTTGG	.	577.0	228.0	695.0	0.0	.	131
PSKH2	85481	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87076277	87076277	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PSKH2	NM_033126	exon2	c.A769T	p.S257C	ATCCGCTAAGTAA	.	88.0	36.0	119.0	2.0	.	385
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	47846685	47846685	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_001013732	exon3	c.T1895A	p.L632Q	AGGGATAGGGGCC	.	53.0	13.0	50.0	0.0	.	.
PTGIR	5739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47124692	47124692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PTGIR	NM_000960	exon3	c.C1006T	p.P336S	CAGAGGGGGCCCT	.	104.0	49.0	146.0	0.0	.	522
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40944529	40944529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PTPRT	NM_007050	exon12	c.T1973A	p.L658H	GAATCGAGGCTGG	.	180.0	63.0	172.0	0.0	.	664
PVRL1	5818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119508959	119508959	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	PVRL1	NM_203285	exon9	c.1228-2A>T	.	ACAACCTGGAAGA	.	50.0	9.0	35.0	0.0	.	90
RAP1A	5906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112247100	112247100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	RAP1A	NM_001010935	exon7	c.G460A	p.V154I	ATCAATGTTAATG	.	150.0	55.0	99.0	0.0	.	847
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	111693804	111693804	+	Silent	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	REV3L	NM_002912	exon13	c.G5754A	p.K1918K	CCTGGGCTTTTCT	.	72.0	34.0	95.0	0.0	.	294
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	111688372	111688372	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	REV3L	NM_002912	exon14	c.A6619T	p.R2207X	GTTTTCTCTGTAT	.	82.0	37.0	136.0	0.0	.	294
RNF212	285498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1084625	1084625	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	RNF212	NM_194439	exon4	c.T248A	p.I83N	TCTAAAATCTGAA	.	91.0	24.0	84.0	0.0	.	68
RNF6	6049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26789149	26789149	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	RNF6,arm,malignant_melanoma,-2	RNF6	NM_183043	exon5	c.A870T	p.T290T	CCTCACTGTAACA	.	105.0	38.0	127.0	0.0	.	228
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11337476	11337476	+	Splice_Site	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ROCK2	NM_004850	exon28	c.3280-2A>T	.	ATTTGCTATAAGA	.	219.0	61.0	215.0	0.0	.	546
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117686251	117686251	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ROS1	NM_002944	exon20	c.A3090T	p.T1030T	CAGAGATGTTTTG	.	97.0	42.0	144.0	0.0	.	1353
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55533794	55533794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	RP1	NM_006269	exon2	c.C268G	p.H90D	GGCAGGCACAGCA	.	58.0	32.0	104.0	0.0	.	102
RPS6KA2	6196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166862319	166862319	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	RPS6KA2	NM_001006932	exon15	c.A1249T	p.I417F	AGTGGATGTTGTT	.	49.0	25.0	78.0	0.0	.	1405
SAMD9L	219285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92763732	92763732	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SAMD9L	NM_152703	exon5	c.A1553C	p.Q518P	TCTCTCTGCCATA	.	207.0	73.0	189.0	1.0	.	94
SCAF8	22828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155145419	155145419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SCAF8	NM_014892	exon17	c.C1978A	p.P660T	GCATTTCCTGTGT	.	80.0	10.0	85.0	0.0	.	91
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47461017	47461017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SCAP	NM_012235	exon13	c.C1741A	p.P581T	CAGGTGGGAAGAT	.	97.0	35.0	128.0	0.0	.	91
SCNN1G	6340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23197855	23197855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SCNN1G	NM_001039	exon2	c.A263T	p.H88L	AAGTCCACTTCCG	.	28.0	14.0	49.0	0.0	.	158
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83675692	83675692	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SEMA3A	NM_006080	exon6	c.T615G	p.L205L	GTGCCCAAGAGTT	.	219.0	66.0	157.0	0.0	.	156
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115783094	115783094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SEMA6A	NM_020796	exon19	c.C2308T	p.P770S	GGCTGGGCTTCCG	.	82.0	44.0	73.0	0.0	.	92
SERTAD3	29946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40947776	40947776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SERTAD3	NM_013368	exon2	c.T212A	p.L71Q	GGAGCCAGGCGAA	.	38.0	13.0	52.0	0.0	.	90
SESN3	143686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94906456	94906456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SESN3	NM_144665	exon10	c.T1442C	p.L481P	GCATAAAGAAGTT	.	151.0	37.0	132.0	0.0	.	90
SFTPA2	729238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81317058	81317058	+	Silent	SNP	A	A	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	NM_001098668	exon6	c.T654G	p.G218G	TCCCCGACCTGCA	.	322.0	261.0	455.0	1.0	.	.
SIAH1	6477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48395984	48395984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SIAH1	NM_001006610	exon2	c.A449C	p.E150A	CAGAGCTCTTCAT	.	88.0	37.0	136.0	0.0	.	415
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232539296	232539296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SIPA1L2	NM_020808	exon19	c.G4838T	p.C1613F	AGGGTGCAGAAGG	.	97.0	37.0	63.0	0.0	.	95
SLC17A3	10786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25850686	25850686	+	Splice_Site	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC17A3	NM_006632	exon8	c.759+1G>A	.	TACTCACGTCTCT	.	157.0	41.0	160.0	0.0	.	91
SLC1A6	6511	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	15063777	15063777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC1A6	NM_005071	exon8	c.G1462T	p.E488X	TGTCTTCCGTGGG	.	148.0	41.0	199.0	1.0	.	186
SLC25A24	29957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108686249	108686249	+	Silent	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC25A24	NM_013386	exon8	c.A1014G	p.E338E	CAAGCCTTCATGT	.	142.0	27.0	118.0	1.0	.	91
SLC29A4	222962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5336621	5336621	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC29A4	NM_153247	exon7	c.C674G	p.P225R	TGCTGCCCGACGA	.	46.0	10.0	34.0	0.0	.	515
SLC7A8	23428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23635745	23635745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SLC7A8	NM_012244	exon2	c.C156G	p.N52K	GATGATGTTCCCT	.	26.0	11.0	45.0	0.0	.	91
SMG1	23049	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	18887703	18887703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SMG1	NM_015092	exon13	c.G1633T	p.A545S	CATGGGCTACAGC	.	201.0	90.0	270.0	0.0	.	1160
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42185565	42185565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SPTBN5	NM_016642	exon2	c.A26G	p.H9R	CGAATGTGGCCCG	.	48.0	24.0	60.0	0.0	.	91
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53050033	53050033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ST18	NM_014682	exon18	c.C2179A	p.P727T	ATCCTGGTGTTGG	.	114.0	39.0	127.0	0.0	.	95
STAC2	342667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37371219	37371219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	STAC2	NM_198993	exon6	c.G757T	p.G253W	CAGGCCCCTCCTC	.	63.0	20.0	79.0	0.0	.	91
SV2A	9900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149879627	149879627	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	SV2A	NM_014849	exon9	c.A1511T	p.Q504L	TGGATCTGATTCT	.	194.0	51.0	163.0	0.0	.	97
TBC1D28	254272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18541690	18541690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TBC1D28	NM_001039397	exon8	c.G323A	p.G108D	GCCCGGCCCCGCA	.	133.0	54.0	164.0	0.0	.	91
TCN2	6948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31006953	31006953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TCN2	NM_001184726	exon2	c.A160G	p.I54V	CCCAGCATCTATG	.	76.0	29.0	112.0	0.0	.	90
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105890085	105890085	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TGFBRAP1	NM_004257	exon9	c.A1728T	p.P576P	GTCGTCTGGATTA	.	157.0	49.0	149.0	0.0	.	91
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169639734	169639734	+	Silent	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	THBS2	NM_003247	exon8	c.A1089G	p.P363P	AAAGGATGGACTG	.	41.0	17.0	58.0	0.0	.	95
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	166996136	166996136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TLL1	NM_012464	exon17	c.T2295A	p.N765K	TGACAATAAACAT	.	185.0	17.0	171.0	0.0	.	158
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94972248	94972248	+	Silent	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TMCC3	NM_020698	exon3	c.A1053T	p.T351T	GTTGGCTGTCTCA	.	52.0	31.0	88.0	0.0	.	92
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18193874	18193874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TOP3A	NM_004618	exon13	c.A1594T	p.I532F	GACCAATGCCATG	.	28.0	11.0	51.0	0.0	.	228
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103288606	103288606	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TPP2	NM_003291	exon13	c.T1542A	p.N514K	TCAGAATACATCA	.	167.0	61.0	204.0	0.0	.	92
TRERF1	55809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42200563	42200563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TRERF1	NM_033502	exon17	c.A3134G	p.K1045R	CGGGCCTTGGTCA	.	56.0	12.0	36.0	0.0	.	230
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99506413	99506413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TRIM4	NM_033017	exon4	c.T590C	p.M197T	ATTCTCATTCGCT	.	99.0	30.0	88.0	0.0	.	227
TRIM52	84851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180684462	180684462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TRIM52	NM_032765	exon2	c.C847A	p.L283I	TCTGAAGTATTCC	.	223.0	42.0	143.0	0.0	.	90
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	31768760	31768760	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TSHZ3	NM_020856	exon2	c.A1939C	p.S647R	CGCTGCTACATGG	.	48.0	21.0	74.0	0.0	.	232
TSTA3	7264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144698802	144698802	+	Silent	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TSTA3	NM_003313	exon2	c.A81C	p.V27V	ATCTGCTACCACC	.	95.0	43.0	83.0	0.0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179641996	179641996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TTN	NM_001267550	exon27	c.T4694C	p.V1565A	ATATTGACATTTT	.	99.0	22.0	76.0	0.0	.	636
TUBB1	81027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57599165	57599165	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TUBB1	NM_030773	exon4	c.T683A	p.L228Q	ACCACCTAGTGTC	.	101.0	27.0	85.0	0.0	.	227
TUBGCP6	85378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50682173	50682173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	TUBGCP6	NM_020461	exon1	c.C716T	p.A239V	AGGTCCGCATTGT	.	32.0	4.0	51.0	0.0	.	93
UBQLN1	29979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86284174	86284174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	UBQLN1	NM_053067	exon7	c.C1174A	p.Q392K	TGTTTTGCATCAG	.	87.0	32.0	117.0	0.0	.	90
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210818961	210818961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	UNC80	NM_032504	exon47	c.A7226G	p.Q2409R	CCCTACAGGCCCT	.	119.0	31.0	108.0	0.0	.	90
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120189490	120189490	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	USP53	NM_019050	exon13	c.G1203A	p.K401K	GGCAAAGCAGAGA	.	663.0	193.0	682.0	0.0	.	660
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98779401	98779401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	VWA3B	NM_144992	exon8	c.C1076T	p.A359V	TGGTGGCCGAGCC	.	65.0	21.0	49.0	0.0	.	139
WFDC3	140686	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44417609	44417609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	WFDC3	NM_080614	exon3	c.A172C	p.T58P	CTGTGGTGCAGCA	.	92.0	24.0	78.0	1.0	.	90
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207176232	207176232	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZDBF2	NM_020923	exon5	c.A6980T	p.D2327V	CATATGATCTGAG	.	289.0	74.0	309.0	0.0	.	3
ZFP42	132625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	188924650	188924650	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZFP42	NM_174900	exon4	c.C689A	p.S230X	AGAGCTCAAAACT	.	68.0	39.0	50.0	0.0	.	228
ZFP91	80829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58347078	58347078	+	Silent	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZFP91	NM_001197051	exon1	c.G324A	p.K108K	GGGCAAGAAGAGT	.	47.0	12.0	41.0	0.0	.	91
ZFR2	23217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3820200	3820200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZFR2	NM_015174	exon11	c.C1720A	p.P574T	TGGCGGGTGACTC	.	52.0	20.0	84.0	0.0	.	70
ZFYVE20	64145	broad.mit.edu;bcgsc.ca	37	3	15137554	15137554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZFYVE20	NM_022340	exon4	c.C74A	p.S25Y	TAGAAAGACTGCA	.	68.0	6.0	95.0	0.0	.	92
ZMYM4	9202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35884069	35884069	+	Silent	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZMYM4	NM_005095	exon29	c.A4335G	p.K1445K	GAGGAAACGAAAT	.	84.0	28.0	111.0	0.0	.	291
ZNF101	94039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19790802	19790802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF101	NM_033204	exon4	c.A1004G	p.E335G	CTGGAGAAAGACC	.	79.0	33.0	96.0	0.0	.	92
ZNF174	7727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3458764	3458764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF174	NM_003450	exon3	c.G1069A	p.G357R	ACGTGCGGAGAGT	.	77.0	33.0	134.0	0.0	.	90
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44981527	44981527	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF180	NM_013256	exon5	c.A1171C	p.S391R	TCCGGCTGAAGGA	.	82.0	37.0	93.0	0.0	.	92
ZNF609	23060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64967591	64967591	+	Silent	SNP	T	T	G	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF609	NM_015042	exon4	c.T2538G	p.S846S	ATACTCTGACATC	.	34.0	14.0	52.0	1.0	.	92
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58018610	58018610	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF773	NM_198542	exon4	c.G1147C	p.G383R	CACACTGGAGAAA	.	128.0	55.0	222.0	0.0	.	91
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38024278	38024278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	ZNF793	NM_001013659	exon7	c.G211A	p.A71T	GGTGAGGCAGCAT	.	128.0	60.0	135.0	0.0	.	68
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31038966	31038967	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	.	.	.	p.G814L	CTGTCTGGGCAAC	.	133.0	62.0	169.0	0.0	.	.
KAT2B	8850	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	20156480	20156481	+	Splice_Site	DNP	GG	GG	TT	novel		TCGA-LG-A6GG-01A-11D-A30V-10	TCGA-LG-A6GG-10A-01D-A30V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85af03fa-9e34-4b29-8897-d39a1b1773e2	b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5	.	.	.	.	.	.	CAAACAGGTAAGT	.	86.0	30.0	147.0	0.0	.	.
