Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GPR98	84059	broad.mit.edu	37	5	89938713	89938713	+	Missense_Mutation	SNP	G	G	A			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr5:89938713G>A	ENST00000405460.2	+	13	2504	c.2408G>A	c.(2407-2409)gGg>gAg	p.G803E		NM_032119.3	NP_115495.3	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98	803					cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			NS(4)|breast(7)|central_nervous_system(6)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(3)|kidney(18)|large_intestine(46)|liver(2)|lung(80)|ovary(12)|pancreas(5)|prostate(1)|skin(50)|stomach(7)|upper_aerodigestive_tract(8)|urinary_tract(6)	269		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CGATCAAGGGGGTCCCTTGTT	0.408000													5	99					0	0	1	0	0
CACNG7	59284	broad.mit.edu	37	19	54444804	54444804	+	Missense_Mutation	SNP	C	C	A			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr19:54444804C>A	ENST00000391767.1	+	5	717	c.505C>A	c.(505-507)Cag>Aag	p.Q169K	CACNG7_ENST00000222212.2_Missense_Mutation_p.Q169K|CACNG7_ENST00000391766.1_Missense_Mutation_p.Q169K|CACNG7_ENST00000468076.1_3'UTR			P62955	CCG7_HUMAN	calcium channel, voltage-dependent, gamma subunit 7	169					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			NS(1)|kidney(1)|large_intestine(6)|lung(12)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	23	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		CAGCTCTGAGCAGTATTTTCA	0.547000													7	103					0.00198382	0.00198382	1	1	0
GPC4	2239	broad.mit.edu	37	X	132458207	132458207	+	Missense_Mutation	SNP	G	G	A			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chrX:132458207G>A	ENST00000370828.3	-	3	1201	c.677C>T	c.(676-678)gCg>gTg	p.A226V	GPC4_ENST00000535467.1_Missense_Mutation_p.A156V	NM_001448.2	NP_001439.2	O75487	GPC4_HUMAN	glypican 4	226					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(16)|skin(1)|upper_aerodigestive_tract(1)	28	Acute lymphoblastic leukemia(192;0.000127)					TCCCGCAACCGCTAAGCCTTG	0.463000													3	36					0	0	1	0	0
FAM134C	162427	broad.mit.edu	37	17	40734812	40734812	+	Missense_Mutation	SNP	T	T	C			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr17:40734812T>C	ENST00000309428.5	-	8	882	c.823A>G	c.(823-825)Act>Gct	p.T275A	FAM134C_ENST00000543197.1_Missense_Mutation_p.T80A|FAM134C_ENST00000585894.1_Missense_Mutation_p.T178A	NM_178126.3	NP_835227.1	Q86VR2	F134C_HUMAN	family with sequence similarity 134, member C	275						integral to membrane				endometrium(1)|large_intestine(3)|liver(1)|lung(2)|ovary(1)|prostate(1)|upper_aerodigestive_tract(2)	11		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.134)		CTGGCAACAGTAGAATCGTCC	0.468000													8	123					0	0	1	0	0
RPL32P3	0	broad.mit.edu	37	3	129115943	129115943	+	RNA	SNP	G	G	A			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr3:129115943G>A	ENST00000514355.1	-	0	452																				lung(1)	1						TCTTTTTGACGATCTTGGGCT	0.517000													10	183					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23526964	23526964	+	Silent	SNP	T	T	C			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr5:23526964T>C	ENST00000296682.3	+	11	1949	c.1767T>C	c.(1765-1767)ttT>ttC	p.F589F		NM_020227.2	NP_064612.2	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	589					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(3)|endometrium(15)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(27)|lung(87)|ovary(6)|pancreas(2)|prostate(4)|skin(10)|upper_aerodigestive_tract(11)	172						GGCGGGGCTTTAGCTGGCAGT	0.602000										HNSCC(3;0.000094)			4	93					0	0	1	0	0
HRAS	3265	broad.mit.edu	37	11	533874	533874	+	Missense_Mutation	SNP	T	T	C	rs121913233		TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr11:533874T>C	ENST00000417302.1	-	3	369	c.182A>G	c.(181-183)cAg>cGg	p.Q61R	HRAS_ENST00000468682.2_5'UTR|HRAS_ENST00000311189.7_Missense_Mutation_p.Q61R|HRAS_ENST00000397596.2_Missense_Mutation_p.Q61R|HRAS_ENST00000451590.1_Missense_Mutation_p.Q61R|HRAS_ENST00000397594.1_Missense_Mutation_p.Q61R	NM_176795.3	NP_789765.1	P01112	RASH_HUMAN	Harvey rat sarcoma viral oncogene homolog	61			Q -> K (in follicular thyroid carcinoma samples; somatic mutation; increases transformation of cultured cell lines; dbSNP:rs28933406).|Q -> L (in melanoma; strongly reduced GTP hydrolysis in the presence of RAF1; increases transformation of cultured cell lines).		activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.Q61R(136)|p.Q61L(117)|p.Q61P(3)		adrenal_gland(1)|bone(3)|breast(7)|cervix(23)|endometrium(4)|haematopoietic_and_lymphoid_tissue(12)|kidney(1)|large_intestine(2)|liver(1)|lung(16)|oesophagus(2)|penis(2)|pituitary(10)|prostate(31)|salivary_gland(24)|skin(184)|soft_tissue(38)|stomach(14)|testis(5)|thymus(1)|thyroid(173)|upper_aerodigestive_tract(122)|urinary_tract(225)	901		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	GTACTCCTCCTGGCCGGCGGT	0.597000	Q61L(KNS62_LUNG)|Q61L(KYSE30_OESOPHAGUS)|Q61L(NCIH1915_LUNG)	6	Mis		"""infrequent sarcomas, rare other types"""	"""rhadomyosarcoma, ganglioneuroblastoma, bladder"""			Costello syndrome	HNSCC(11;0.0054)			7	68					0	0	1	0	0
UBASH3A	53347	broad.mit.edu	37	21	43838616	43838616	+	Missense_Mutation	SNP	A	A	T			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr21:43838616A>T	ENST00000319294.6	+	7	975	c.944A>T	c.(943-945)gAg>gTg	p.E315V	UBASH3A_ENST00000291535.6_Missense_Mutation_p.E277V|UBASH3A_ENST00000398367.1_Missense_Mutation_p.E277V	NM_018961.3	NP_061834.1	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing A	315	SH3.					cytosol|nucleus				breast(1)|central_nervous_system(1)|cervix(1)|endometrium(1)|large_intestine(9)|lung(12)|ovary(3)	28						GAAGCCAGCGAGGGCTGGGTG	0.592000													7	86					0	0	1	0	0
BMS1P20	0	broad.mit.edu	37	22	22664639	22664639	+	RNA	SNP	G	G	A	rs9306349	by1000genomes	TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr22:22664639G>A	ENST00000426066.1	+	0	820					NR_027293.1																						CCAGCCTTCTGTAACCCAGTA	0.428000													3	40					0	0	1	0	0
KCNH8	131096	broad.mit.edu	37	3	19492678	19492678	+	Missense_Mutation	SNP	C	C	G			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr3:19492678C>G	ENST00000328405.2	+	10	1873	c.1607C>G	c.(1606-1608)tCt>tGt	p.S536C	KCNH8_ENST00000537696.1_3'UTR	NM_144633.2	NP_653234.2	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H (eag-related), member 8	536						integral to membrane	two-component sensor activity			NS(1)|breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(12)|liver(3)|lung(37)|ovary(3)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	77						GAACTGCGTTCTGACATCACT	0.438000													7	152					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29625875	29625875	+	Missense_Mutation	SNP	T	T	C	rs143761036	by1000genomes	TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr20:29625875T>C	ENST00000278882.3	+	5	499	c.119T>C	c.(118-120)aTc>aCc	p.I40T	FRG1B_ENST00000358464.4_Missense_Mutation_p.I40T|FRG1B_ENST00000439954.2_Missense_Mutation_p.I45T														p.I40T(4)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGTACAGAATCGCCCTGAAA	0.358000													7	114					0	0	1	0	0
SLC16A3	9123	broad.mit.edu	37	17	80194039	80194039	+	Missense_Mutation	SNP	A	A	G			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr17:80194039A>G	ENST00000581287.1	+	1	2477	c.155A>G	c.(154-156)gAg>gGg	p.E52G	SLC16A3_ENST00000392339.1_Missense_Mutation_p.E52G|SLC16A3_ENST00000392341.1_Missense_Mutation_p.E52G|SLC16A3_ENST00000582743.1_Missense_Mutation_p.E52G|SLC16A3_ENST00000584781.1_3'UTR	NM_001206951.1|NM_001206952.1	NP_001193880.1|NP_001193881.1	O15427	MOT4_HUMAN	solute carrier family 16 (monocarboxylate transporter), member 3	52					blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			endometrium(2)|kidney(1)|lung(3)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	9	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	CTCATACAGGAGTTTGGGATC	0.622000													4	108					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12977541	12977541	+	Missense_Mutation	SNP	C	C	T			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr19:12977541C>T	ENST00000251472.4	+	18	2143	c.2104C>T	c.(2104-2106)Cgc>Tgc	p.R702C		NM_014975.2	NP_055790.1	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase 1	702	AGC-kinase C-terminal.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			NS(1)|cervix(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(9)|lung(20)|ovary(5)|prostate(5)|skin(3)	56						CGTGGAAATCCGCCAGTTCTC	0.622000													4	33					0	0	1	0	0
BCL6	604	broad.mit.edu	37	3	187446240	187446240	+	Frame_Shift_Del	DEL	G	G	-			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr3:187446240delG	ENST00000406870.2	-	6	1814	c.1448delC	c.(1447-1449)ccafs	p.P483fs	BCL6_ENST00000450123.2_Frame_Shift_Del_p.P483fs|RP11-211G3.3_ENST00000449623.1_Intron|RP11-211G3.3_ENST00000437407.1_Intron|BCL6_ENST00000232014.4_Frame_Shift_Del_p.P483fs	NM_001706.4	NP_001697.2	P41182	BCL6_HUMAN	B-cell CLL/lymphoma 6	483					negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(5)|kidney(3)|large_intestine(9)|lung(10)|ovary(3)|prostate(4)|skin(1)|upper_aerodigestive_tract(1)	40	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		TGCATGCTGTGGGGACTGAGA	0.617			"""T, Mis"""	"""IG loci, ZNFN1A1, LCP1, PIM1, TFRC, CIITA, NACA, HSPCB, HSPCA, HIST1H4I, IL21R,  POU2AF1, ARHH, EIF4A2, SFRS3"""	"""NHL, CLL"""								2	4	---	---	---	---					
CUL9	23113	broad.mit.edu	37	6	43173002	43173002	+	Splice_Site	DEL	T	T	-			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr6:43173002delT	ENST00000252050.4	+	24	4718	c.4634delT	c.(4633-4635)atg>ag	p.M1545fs	CUL9_ENST00000372647.2_Splice_Site_p.M1545fs|CUL9_ENST00000354495.3_Splice_Site_p.M1435fs	NM_015089.2	NP_055904.1	Q8IWT3	CUL9_HUMAN	cullin 9	1545					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(18)|liver(1)|lung(30)|ovary(5)|prostate(3)|skin(7)|upper_aerodigestive_tract(1)|urinary_tract(4)	92						TGCCCCCAGATGAGTGAGCAG	0.572													16	238	---	---	---	---					
STAG3L2	0	broad.mit.edu	37	7	74300803	74300804	+	RNA	INS	-	-	A			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr7:74300803_74300804insA	ENST00000423186.1	-	0	499							P0CL84	ST3L2_HUMAN								nucleus	binding			breast(1)|central_nervous_system(1)|large_intestine(1)|lung(1)|pancreas(1)	5						TCTTCATACTTAAAAAAAAAAA	0.455													2	4	---	---	---	---					
FOLH1B	219595	broad.mit.edu	37	11	89405323	89405326	+	RNA	DEL	TTTA	TTTA	-	rs34562444		TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr11:89405323_89405326delTTTA	ENST00000532352.1	+	0	1114							Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B						proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(7)|lung(26)|ovary(4)|skin(4)|urinary_tract(2)	48						aattatattgtttatttatttttg	0.230													2	4	---	---	---	---					
SACS	26278	broad.mit.edu	37	13	23906843	23906852	+	Frame_Shift_Del	DEL	AAGGTCACTA	AAGGTCACTA	-			TCGA-EJ-A7NJ-01A-22D-A34U-08	TCGA-EJ-A7NJ-10A-01D-A34X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	eafb824c-0e84-48ec-886f-8c499ac06f94	0fe4914b-4eed-4620-bd08-4a854ee94df6	g.chr13:23906843_23906852delAAGGTCACTA	ENST00000382298.3	-	10	11751_11760	c.11163_11172delTAGTGACCTT	c.(11161-11172)ggtagtgaccttfs	p.GSDL3721fs	SACS_ENST00000382292.3_Frame_Shift_Del_p.GSDL3721fs|SACS_ENST00000402364.1_Frame_Shift_Del_p.GSDL2971fs	NM_014363.4	NP_055178.3	Q9NZJ4	SACS_HUMAN	spastic ataxia of Charlevoix-Saguenay (sacsin)	3721					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			NS(1)|biliary_tract(1)|breast(3)|central_nervous_system(2)|endometrium(22)|haematopoietic_and_lymphoid_tissue(1)|kidney(15)|large_intestine(54)|lung(49)|ovary(7)|pancreas(1)|prostate(4)|skin(10)|stomach(2)|upper_aerodigestive_tract(6)|urinary_tract(11)	189		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CTTGTGGACCAAGGTCACTACCTTCTTGTT	0.386													7	94	---	---	---	---					
