Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PASD1	139135	broad.mit.edu	37	X	150828276	150828276	+	Missense_Mutation	SNP	C	C	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chrX:150828276C>G	ENST00000370357.4	+	10	1054	c.809C>G	c.(808-810)aCa>aGa	p.T270R		NM_173493.2	NP_775764.2	Q8IV76	PASD1_HUMAN	PAS domain containing 1	270						nucleus	signal transducer activity			breast(2)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(3)|liver(1)|lung(25)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	48	Acute lymphoblastic leukemia(192;6.56e-05)					TGCTCCAGTACAGTTTTCCTG	0.403000													4	37					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17015110	17015110	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr19:17015110C>T	ENST00000443236.1	-	32	4349	c.4318G>A	c.(4318-4320)Gtg>Atg	p.V1440M		NM_015692.2	NP_056507.2	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain containing 8	1393						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			breast(11)|central_nervous_system(3)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(17)|lung(14)|ovary(7)|pancreas(2)|prostate(4)|skin(5)	82						GCGGCAGCCACGTCACCCAGC	0.632000													6	45					0	0	1	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274416	39274416	+	Missense_Mutation	SNP	C	C	T	rs408579	by1000genomes	TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr17:39274416C>T	ENST00000391413.2	-	1	190	c.152G>A	c.(151-153)aGg>aAg	p.R51K		NM_033059.3	NP_149048.2	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	51	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament		p.R51K(1)		endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|lung(8)|prostate(5)|skin(1)	33		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GCACTGGGGCCTGCAGCAGCT	0.672000													4	92					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr20:29628245G>A	ENST00000278882.3	+	6	627	c.247G>A	c.(247-249)Gcc>Acc	p.A83T	FRG1B_ENST00000439954.2_Missense_Mutation_p.A88T|FRG1B_ENST00000358464.4_Missense_Mutation_p.A83T														p.A83T(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GGCTTTGTTGGCCTCAAATAG	0.353000													4	142					0	0	1	0	0
SPARCL1	8404	broad.mit.edu	37	4	88403694	88403694	+	Missense_Mutation	SNP	T	T	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr4:88403694T>C	ENST00000418378.1	-	9	2121	c.1550A>G	c.(1549-1551)gAc>gGc	p.D517G	SPARCL1_ENST00000282470.6_Missense_Mutation_p.D517G|SPARCL1_ENST00000503414.1_Missense_Mutation_p.D392G	NM_001128310.1	NP_001121782.1	Q14515	SPRL1_HUMAN	SPARC-like 1 (hevin)	517					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			breast(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(7)|ovary(1)|skin(2)|stomach(2)	21				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		CACTTCAAAGTCCGTACAAGT	0.408000													7	38					0	0	1	0	0
UBTF	7343	broad.mit.edu	37	17	42293035	42293035	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr17:42293035G>A	ENST00000302904.4	-	5	953	c.461C>T	c.(460-462)cCg>cTg	p.P154L	UBTF_ENST00000529383.1_Missense_Mutation_p.P154L|UBTF_ENST00000537550.1_5'UTR|UBTF_ENST00000343638.5_Missense_Mutation_p.P154L|UBTF_ENST00000393606.3_Missense_Mutation_p.P154L|UBTF_ENST00000436088.1_Missense_Mutation_p.P154L|UBTF_ENST00000527034.1_Missense_Mutation_p.P154L|CTB-175E5.7_ENST00000586560.1_RNA|UBTF_ENST00000526094.1_Missense_Mutation_p.P154L|UBTF_ENST00000533177.1_Missense_Mutation_p.P154L			P17480	UBF1_HUMAN	upstream binding transcription factor, RNA polymerase I	154					positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding			breast(1)|central_nervous_system(2)|endometrium(1)|large_intestine(9)|lung(10)|ovary(1)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	29		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		CTTCTTCTCCGGAAGCTCCTT	0.557000													14	136					0	0	1	0	0
ZNF480	147657	broad.mit.edu	37	19	52825756	52825756	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr19:52825756G>A	ENST00000595962.1	+	5	1319	c.1253G>A	c.(1252-1254)cGa>cAa	p.R418Q	ZNF480_ENST00000490272.1_3'UTR|CTD-2525I3.6_ENST00000594379.1_RNA|ZNF480_ENST00000335090.6_Missense_Mutation_p.R341Q|ZNF480_ENST00000334564.7_Missense_Mutation_p.R375Q	NM_144684.2	NP_653285.2	Q8WV37	ZN480_HUMAN	zinc finger protein 480	418					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			endometrium(2)|kidney(1)|large_intestine(3)|lung(4)|prostate(1)|upper_aerodigestive_tract(1)	12				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GCACGACATCGAAGAATTCAT	0.373000													13	89					0	0	1	0	0
CPPED1	55313	broad.mit.edu	37	16	12875121	12875121	+	Silent	SNP	T	T	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr16:12875121T>C	ENST00000381774.4	-	2	450	c.210A>G	c.(208-210)caA>caG	p.Q70Q	CPPED1_ENST00000433677.2_Silent_p.Q70Q|CPPED1_ENST00000261660.4_Silent_p.Q70Q	NM_018340.2	NP_060810.2	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain containing 1	70							hydrolase activity|metal ion binding			cervix(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(10)|skin(1)|urinary_tract(1)	18						CCTGGACGGCTTGCTCAGTTA	0.572000													4	38					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027375	37027375	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chrX:37027375C>T	ENST00000358047.3	+	1	944	c.892C>T	c.(892-894)Cct>Tct	p.P298S		NM_001013736.2	NP_001013758.1	Q5HY64	FA47C_HUMAN	family with sequence similarity 47, member C	298										breast(4)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|lung(63)|ovary(6)|pancreas(1)|prostate(6)|skin(8)|upper_aerodigestive_tract(4)|urinary_tract(1)	120						CCATCGGGAGCCTCCTGAGAC	0.592000													15	57					0	0	1	0	0
NR2F2	7026	broad.mit.edu	37	15	96875647	96875647	+	Missense_Mutation	SNP	C	C	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr15:96875647C>G	ENST00000394166.3	+	1	1702	c.313C>G	c.(313-315)Cgc>Ggc	p.R105G	NR2F2_ENST00000421109.2_Intron	NM_021005.3	NP_066285.1	P24468	COT2_HUMAN	nuclear receptor subfamily 2, group F, member 2	105					lipid metabolic process|negative regulation of cyclin-dependent protein kinase activity|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment	nucleus	ligand-regulated transcription factor activity|protein homodimerization activity|retinoic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity|zinc ion binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(6)|liver(2)|lung(3)|ovary(2)|urinary_tract(1)	17	Lung NSC(78;0.0186)|Melanoma(26;0.0195)|all_lung(78;0.0297)		OV - Ovarian serous cystadenocarcinoma(32;0.0856)			CTTCTTCAAGCGCAGCGTGCG	0.612000													3	31					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593016	96593016	+	Missense_Mutation	SNP	C	C	A	rs79307257	by1000genomes	TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr2:96593016C>A	ENST00000456556.1	-	28	1969	c.1885G>T	c.(1885-1887)Gat>Tat	p.D629Y						ankyrin repeat domain 36C									p.D629Y(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						GAAACAGAATCTTTCTCATCA	0.318000													5	58					0.014758	0.014758	1	1	0
SELPLG	0	broad.mit.edu	37	12	109017473	109017473	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:109017473G>A	ENST00000388962.3	-	3	740	c.581C>T	c.(580-582)aCt>aTt	p.T194I	SELPLG_ENST00000228463.6_Missense_Mutation_p.T220I|SELPLG_ENST00000550948.1_Missense_Mutation_p.T204I	NM_003006.4	NP_002997.2	Q14242	SELPL_HUMAN	selectin P ligand	204	12 X 10 AA tandem repeats.				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(3)|prostate(3)|skin(1)	12						TGCTGGTGCAGTGGTCTGTGC	0.612000													11	42					0	0	1	0	0
LPPR4	0	broad.mit.edu	37	1	99772408	99772408	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr1:99772408G>A	ENST00000370185.3	+	7	2631	c.2134G>A	c.(2134-2136)Gaa>Aaa	p.E712K	LPPR4_ENST00000457765.1_Missense_Mutation_p.E654K|LPPR4_ENST00000370184.1_Missense_Mutation_p.E554K	NM_014839.4	NP_055654.2	Q7Z2D5	LPPR4_HUMAN		712							phosphatidate phosphatase activity			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(17)|lung(39)|ovary(3)|prostate(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	72		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		AGAGGGCAGCGAAATTGGCTC	0.522000													4	37					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117977596	117977596	+	Missense_Mutation	SNP	T	T	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:117977596T>G	ENST00000425217.1	-	10	1582	c.1528A>C	c.(1528-1530)Agt>Cgt	p.S510R	KSR2_ENST00000302438.5_Missense_Mutation_p.S236R|KSR2_ENST00000339824.5_Missense_Mutation_p.S539R|KSR2_ENST00000545002.1_5'UTR	NM_173598.4	NP_775869.3	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	539	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			NS(1)|breast(3)|central_nervous_system(2)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(12)|lung(25)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	67	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGCGTGGCACTAGGAGGGAGG	0.642000													8	65					0	0	1	0	0
NEK1	4750	broad.mit.edu	37	4	170482702	170482702	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr4:170482702C>A	ENST00000439128.2	-	15	1835	c.1195G>T	c.(1195-1197)Gaa>Taa	p.E399*	NEK1_ENST00000507142.1_Nonsense_Mutation_p.E399*|NEK1_ENST00000511633.1_Nonsense_Mutation_p.E399*|NEK1_ENST00000512193.1_Intron|NEK1_ENST00000510533.1_Nonsense_Mutation_p.E399*	NM_012224.2	NP_036356.1	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	399					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(1)|breast(3)|endometrium(3)|kidney(2)|large_intestine(13)|lung(18)|ovary(2)|prostate(2)|stomach(1)	45		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		TTTATTCTTTCCAACTTTGGG	0.333000													6	43					0.00198382	0.00209403	1	1	0
RAF1	5894	broad.mit.edu	37	3	12632413	12632413	+	Silent	SNP	T	T	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr3:12632413T>G	ENST00000251849.4	-	12	1693	c.1254A>C	c.(1252-1254)gcA>gcC	p.A418A	RAF1_ENST00000542177.1_Silent_p.A337A|RAF1_ENST00000534997.1_Silent_p.A203A|RAF1_ENST00000442415.2_Silent_p.A438A	NM_002880.3	NP_002871.1	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog 1	418	Protein kinase.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|RAF1/DAZL(2)|SRGAP3/RAF1(6)	biliary_tract(1)|endometrium(4)|kidney(3)|large_intestine(9)|liver(1)|lung(7)|ovary(1)|pancreas(1)|prostate(2)|stomach(2)|upper_aerodigestive_tract(1)	32					Sorafenib(DB00398)	GGGTCACAATTGCCAGGTTGT	0.532000			T	SRGAP3	pilocytic astrocytoma				Noonan syndrome				11	99					0	0	1	0	0
PDZRN3	23024	broad.mit.edu	37	3	73450103	73450103	+	Silent	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr3:73450103C>T	ENST00000263666.4	-	5	1338	c.1224G>A	c.(1222-1224)caG>caA	p.Q408Q	PDZRN3_ENST00000535920.1_Silent_p.Q130Q|PDZRN3_ENST00000466780.1_Silent_p.Q65Q|PDZRN3_ENST00000462146.2_Silent_p.Q65Q|PDZRN3_ENST00000466348.1_5'UTR|PDZRN3_ENST00000479530.1_Silent_p.Q125Q	NM_015009.1	NP_055824.1	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	408							ubiquitin-protein ligase activity|zinc ion binding			breast(2)|central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(13)|lung(31)|ovary(4)|pancreas(2)|prostate(2)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	69		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TGTCCATCTCCTGATGGATGT	0.438000													14	98					0	0	1	0	0
CDK12	51755	broad.mit.edu	37	17	37667841	37667841	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr17:37667841G>A	ENST00000447079.4	+	8	2759	c.2726G>A	c.(2725-2727)gGa>gAa	p.G909E	CDK12_ENST00000430627.2_Missense_Mutation_p.G909E	NM_015083.1|NM_016507.2	NP_055898.1|NP_057591.2	Q9NYV4	CDK12_HUMAN	cyclin-dependent kinase 12	909	Protein kinase.				mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			NS(4)|breast(3)|endometrium(5)|kidney(4)|large_intestine(11)|lung(23)|ovary(11)|prostate(4)|skin(2)|urinary_tract(3)	70						CTACTGCTAGGAGAGGAACGT	0.398000			"""Mis, N, F"""		serous ovarian					TCGA Ovarian(9;0.13)			8	54					0	0	1	0	0
BMS1P20	0	broad.mit.edu	37	22	22663087	22663087	+	RNA	SNP	A	A	G	rs1054158		TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr22:22663087A>G	ENST00000426066.1	+	0	526					NR_027293.1																						GCTGCCACATAAGTTGTCCTT	0.303000													3	21					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24446015	24446015	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr6:24446015C>T	ENST00000230036.1	-	19	1975	c.1865G>A	c.(1864-1866)gGg>gAg	p.G622E		NM_001503.3	NP_001494.2	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific phospholipase D1	622						extracellular region	glycosylphosphatidylinositol phospholipase D activity			breast(3)|endometrium(5)|kidney(1)|large_intestine(11)|lung(8)|ovary(2)|prostate(1)|urinary_tract(1)	32						ATACACCCTCCCAAGGCTCTT	0.537000													8	103					0	0	1	0	0
OR8S1	341568	broad.mit.edu	37	12	48920026	48920026	+	Silent	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:48920026C>T	ENST00000310194.1	+	1	612	c.612C>T	c.(610-612)ctC>ctT	p.L204L	OR8S1_ENST00000551654.1_Intron	NM_001005203.2	NP_001005203.2	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S, member 1	204					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(11)|skin(4)	22						GCTCCACTCTCCTACATGGGC	0.507000													8	67					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	T	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr20:29628243T>C	ENST00000278882.3	+	6	625	c.245T>C	c.(244-246)tTg>tCg	p.L82S	FRG1B_ENST00000439954.2_Missense_Mutation_p.L87S|FRG1B_ENST00000358464.4_Missense_Mutation_p.L82S														p.L82S(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGGCTTTGTTGGCCTCAAAT	0.363000													4	141					0	0	1	0	0
LCMT2	9836	broad.mit.edu	37	15	43621413	43621413	+	Silent	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr15:43621413G>A	ENST00000305641.5	-	1	1390	c.1275C>T	c.(1273-1275)ctC>ctT	p.L425L	LCMT2_ENST00000544735.1_Silent_p.L4L|LCMT2_ENST00000567039.1_3'UTR	NM_014793.4	NP_055608.2	O60294	LCMT2_HUMAN	leucine carboxyl methyltransferase 2	425					tRNA processing		methyltransferase activity|protein binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(2)|liver(1)|lung(9)|skin(1)|urinary_tract(1)	20		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.1e-07)	L-Leucine(DB00149)	GACTCTCTGAGAGTCTTGTCA	0.488000													9	86					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593000	96593000	+	Missense_Mutation	SNP	A	A	G	rs111976783		TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr2:96593000A>G	ENST00000456556.1	-	28	1985	c.1901T>C	c.(1900-1902)aTa>aCa	p.I634T						ankyrin repeat domain 36C									p.I634T(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TTCTGTGGCTATATTTGAAAC	0.338000													5	56					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974801	49974801	+	Missense_Mutation	SNP	T	T	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr11:49974801T>A	ENST00000555099.1	+	1	859	c.827T>A	c.(826-828)aTa>aAa	p.I276K		NM_001001955.2	NP_001001955.2	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C, member 13	276					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			autonomic_ganglia(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(24)|ovary(2)|prostate(2)|skin(6)|upper_aerodigestive_tract(1)	43						TACACTATGATAACTTCTATG	0.358000													8	69					0	0	1	0	0
AK5	26289	broad.mit.edu	37	1	77763264	77763264	+	Missense_Mutation	SNP	G	G	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr1:77763264G>C	ENST00000344720.5	+	4	1384	c.358G>C	c.(358-360)Ggt>Cgt	p.G120R	AK5_ENST00000317704.4_3'UTR|AK5_ENST00000354567.2_Missense_Mutation_p.G146R	NM_012093.3	NP_036225.2	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5	146					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(27)|prostate(1)|skin(2)|stomach(1)	40						AAGTGGAAAGGGTACTCAGAG	0.388000													17	101					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117723067	117723067	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:117723067G>A	ENST00000317775.6	-	7	2046	c.1361C>T	c.(1360-1362)gCc>gTc	p.A454V	NOS1_ENST00000338101.4_Missense_Mutation_p.A454V|NOS1_ENST00000344089.3_3'UTR	NM_000620.4|NM_001204218.1	NP_000611.1|NP_001191147.1	P29475	NOS1_HUMAN	nitric oxide synthase 1 (neuronal)	454					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			NS(1)|breast(1)|central_nervous_system(3)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(17)|large_intestine(21)|lung(43)|ovary(3)|pancreas(1)|prostate(6)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	117	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTTGTTGGTGGCATACTTGAC	0.552000													3	32					0	0	1	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73205333	73205333	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr4:73205333G>A	ENST00000286657.4	-	5	775	c.739C>T	c.(739-741)Cgc>Tgc	p.R247C		NM_014243.2	NP_055058.2	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1 motif, 3	247	Poly-Arg.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding	p.R247C(1)		NS(1)|breast(2)|cervix(1)|endometrium(5)|kidney(6)|large_intestine(21)|lung(33)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	76			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGTCTGCGGCGTCTCATTGTT	0.483000													24	197					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593025	96593025	+	Missense_Mutation	SNP	C	C	T	rs75189823	by1000genomes	TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr2:96593025C>T	ENST00000456556.1	-	28	1960	c.1876G>A	c.(1876-1878)Gat>Aat	p.D626N						ankyrin repeat domain 36C									p.D626N(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TCTTTCTCATCACTTGTAGCC	0.318000													5	57					0	0	1	0	0
CDK12	51755	broad.mit.edu	37	17	37618973	37618973	+	Nonsense_Mutation	SNP	A	A	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr17:37618973A>T	ENST00000447079.4	+	1	682	c.649A>T	c.(649-651)Aaa>Taa	p.K217*	CDK12_ENST00000430627.2_Nonsense_Mutation_p.K217*	NM_015083.1|NM_016507.2	NP_055898.1|NP_057591.2	Q9NYV4	CDK12_HUMAN	cyclin-dependent kinase 12	217					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			NS(4)|breast(3)|endometrium(5)|kidney(4)|large_intestine(11)|lung(23)|ovary(11)|prostate(4)|skin(2)|urinary_tract(3)	70						GGACAGCCCAAAACGGAGATC	0.502000			"""Mis, N, F"""		serous ovarian					TCGA Ovarian(9;0.13)			11	98					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027275	37027275	+	Missense_Mutation	SNP	G	G	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chrX:37027275G>T	ENST00000358047.3	+	1	844	c.792G>T	c.(790-792)gaG>gaT	p.E264D		NM_001013736.2	NP_001013758.1	Q5HY64	FA47C_HUMAN	family with sequence similarity 47, member C	264										breast(4)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|lung(63)|ovary(6)|pancreas(1)|prostate(6)|skin(8)|upper_aerodigestive_tract(4)|urinary_tract(1)	120						AGCCTCCCGAGACTGGAGTGT	0.612000													9	58					0.00829132	0.00851541	1	1	0
ZSCAN30	100101467	broad.mit.edu	37	18	32833679	32833679	+	Missense_Mutation	SNP	T	T	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr18:32833679T>C	ENST00000420878.3	-	5	1675	c.1220A>G	c.(1219-1221)cAc>cGc	p.H407R	ZNF397_ENST00000592264.1_Intron|ZNF397_ENST00000355632.4_Intron|ZNF397_ENST00000589420.1_Intron|ZSCAN30_ENST00000333206.5_Missense_Mutation_p.H407R|ZNF397_ENST00000261333.6_Intron	NM_001166012.1	NP_001159484.1	Q86W11	ZSC30_HUMAN	zinc finger and SCAN domain containing 30	407					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(5)|lung(3)|urinary_tract(1)	9						ATCTCCAGTGTGAATTTTCTT	0.433000													3	67					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6500486	6500486	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr1:6500486delG	ENST00000377828.1	+	3	829	c.661delG	c.(661-663)gtcfs	p.V221fs		NM_031475.2	NP_113663.2	B1AK53	ESPN_HUMAN	espin	221					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding			NS(1)|breast(2)|cervix(1)|kidney(1)|large_intestine(2)|lung(7)|ovary(1)|prostate(1)|skin(1)	17	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		CCACAGCCCAGTCATCGTGTG	0.756													2	4	---	---	---	---					
RPTN	126638	broad.mit.edu	37	1	152128169	152128172	+	Frame_Shift_Del	DEL	TGTC	TGTC	-			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr1:152128169_152128172delTGTC	ENST00000316073.3	-	3	1467_1470	c.1403_1406delGACA	c.(1402-1407)agacaafs	p.RQ468fs		NM_001122965.1	NP_001116437.1	Q6XPR3	RPTN_HUMAN	repetin	468	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding			breast(2)|central_nervous_system(1)|endometrium(14)|kidney(2)|large_intestine(1)|lung(32)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	59						ACTCTGGCCTTGTCTGTCTGTCTG	0.500													8	1029	---	---	---	---					
RP11-242J7.1	0	broad.mit.edu	37	4	185536410	185536413	+	RNA	DEL	TTTG	TTTG	-	rs146473442		TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr4:185536410_185536413delTTTG	ENST00000522554.1	-	0	292																											CAAAGCCGATtttgtttgtttgtt	0.451													11	5	---	---	---	---					
RP11-525A16.4	0	broad.mit.edu	37	10	112210759	112210759	+	RNA	DEL	A	A	-			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr10:112210759delA	ENST00000609514.1	-	0	69																											GATGCAGaagaaaaaaaaaaa	0.413													2	4	---	---	---	---					
FNBP4	23360	broad.mit.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	GGTGGT	-	rs59413596		TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr11:47788664_47788669delGGTGGT	ENST00000263773.5	-	1	184_189	c.172_177delACCACC	c.(172-177)accaccdel	p.TT58del	FNBP4_ENST00000534003.1_5'UTR	NM_015308.2	NP_056123.2	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	58								p.T58_T59delTT(3)		NS(1)|breast(2)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(6)|lung(12)|ovary(3)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	44						CAGTCACCGCGGTGGTGGTGGTCGTC	0.748													3	5	---	---	---	---					
CHD4	1108	broad.mit.edu	37	12	6711145	6711147	+	In_Frame_Del	DEL	TCC	TCC	-	rs71584865	byFrequency	TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:6711145_6711147delTCC	ENST00000309577.6	-	4	580_582	c.417_419delGGA	c.(415-420)gaggat>gat	p.E139del	CHD4_ENST00000357008.2_In_Frame_Del_p.E139del|CHD4_ENST00000544040.1_In_Frame_Del_p.E132del|CHD4_ENST00000544484.1_In_Frame_Del_p.E136del			Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	139	Poly-Asp.		E -> D (in dbSNP:rs1639122).		chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ATCATCATCAtcctcctcctcct	0.453													7	57	---	---	---	---					
RNASEH2B	79621	broad.mit.edu	37	13	51530586	51530587	+	Frame_Shift_Ins	INS	-	-	A	rs75254367		TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr13:51530586_51530587insA	ENST00000336617.3	+	11	1314_1315	c.915_916insA	c.(916-918)aaafs	p.K306fs	RNASEH2B_ENST00000495244.2_3'UTR|RNASEH2B_ENST00000422660.1_Intron	NM_024570.3	NP_078846.2	Q5TBB1	RNH2B_HUMAN	ribonuclease H2, subunit B	306					RNA catabolic process	nucleus|ribonuclease H2 complex				endometrium(2)|liver(1)|lung(1)|upper_aerodigestive_tract(1)	5		Acute lymphoblastic leukemia(7;1.03e-07)|Breast(56;0.00122)|Lung NSC(96;0.00143)|Prostate(109;0.0047)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;9e-08)		GGGTAAAAAATAAAAAAAAAAT	0.297													4	8	---	---	---	---					
ZIC5	85416	broad.mit.edu	37	13	100623637	100623637	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr13:100623637delT	ENST00000267294.4	-	1	526	c.293delA	c.(292-294)cagfs	p.Q98fs		NM_033132.3	NP_149123.2	Q96T25	ZIC5_HUMAN	Zic family member 5	98					cell differentiation	nucleus	DNA binding|zinc ion binding			endometrium(3)|kidney(1)|lung(2)|prostate(1)|skin(2)	9	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CGTGCTCGCCTGGGCCATGTG	0.771													2	4	---	---	---	---					
SNHG14	0	broad.mit.edu	37	15	25465467	25465469	+	RNA	DEL	GAA	GAA	-			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr15:25465467_25465469delGAA	ENST00000424208.1	+	0	3039				SNHG14_ENST00000453082.2_RNA	NR_003305.1																						TGGTGAGACCGAAGAAGACTTGC	0.581													9	4	---	---	---	---					
