Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AHNAK2	113146	broad.mit.edu	37	14	105419464	105419464	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr14:105419464C>T	ENST00000333244.5	-	7	2443	c.2324G>A	c.(2323-2325)gGc>gAc	p.G775D	AHNAK2_ENST00000557457.1_Intron	NM_138420.2	NP_612429.2	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	775						nucleus				cervix(4)|endometrium(4)|large_intestine(3)|lung(14)|ovary(2)|prostate(2)|skin(1)|stomach(3)	33		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CAGCTTGGGGCCCTTGAGGTC	0.632000													93	177					0	0	1	0	0
KLHL30	377007	broad.mit.edu	37	2	239049642	239049642	+	Missense_Mutation	SNP	G	G	C			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr2:239049642G>C	ENST00000409223.1	+	2	354	c.247G>C	c.(247-249)Gtg>Ctg	p.V83L	KLHL30_ENST00000305959.4_Missense_Mutation_p.V65L			Q0D2K2	KLH30_HUMAN	kelch-like family member 30	83	BTB.									lung(4)	4		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GGAGCCCGCCGTGGTGGGACA	0.672000													59	136					0	0	1	0	0
CSNK2A1	1457	broad.mit.edu	37	20	470440	470440	+	Missense_Mutation	SNP	T	T	C	rs61730060		TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr20:470440T>C	ENST00000217244.3	-	10	1082	c.707A>G	c.(706-708)cAt>cGt	p.H236R	CSNK2A1_ENST00000400227.3_Missense_Mutation_p.H236R|CSNK2A1_ENST00000349736.5_Missense_Mutation_p.H236R|CSNK2A1_ENST00000400217.2_Missense_Mutation_p.H100R	NM_177559.2	NP_808227.1	P68400	CSK21_HUMAN	casein kinase 2, alpha 1 polypeptide	236	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|NuRD complex|plasma membrane|Sin3 complex	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity	p.H236R(2)		autonomic_ganglia(1)|central_nervous_system(2)|endometrium(1)|large_intestine(4)|lung(5)|ovary(1)|prostate(2)|urinary_tract(1)	17		Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.0969)			ATAATTGTCATGTCCATGGAA	0.373000													3	43					0	0	1	0	0
CTR9	9646	broad.mit.edu	37	11	10800225	10800225	+	Splice_Site	SNP	G	G	C			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr11:10800225G>C	ENST00000361367.2	+	25	3521		c.e25-1			NM_014633.3	NP_055448.1	Q6PD62	CTR9_HUMAN	CTR9, Paf1/RNA polymerase II complex component						histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				breast(4)|central_nervous_system(2)|cervix(1)|endometrium(7)|kidney(3)|large_intestine(7)|lung(12)|ovary(2)|pancreas(1)|stomach(1)	40				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		ATCTTTGCCAGACATCCCAGG	0.448000													13	23					0	0	1	0	0
KLC4	89953	broad.mit.edu	37	6	43038170	43038170	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr6:43038170C>T	ENST00000394056.2	+	8	1453	c.958C>T	c.(958-960)Cgg>Tgg	p.R320W	KLC4_ENST00000347162.5_Missense_Mutation_p.R320W|KLC4_ENST00000259708.3_Missense_Mutation_p.R338W|KLC4_ENST00000394058.1_Missense_Mutation_p.R320W|KLC4_ENST00000453940.2_Missense_Mutation_p.R243W|KLC4_ENST00000479388.1_Missense_Mutation_p.R320W			Q9NSK0	KLC4_HUMAN	kinesin light chain 4	320						cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			endometrium(2)|large_intestine(7)|lung(5)|ovary(1)|pancreas(1)|skin(3)|urinary_tract(4)	23			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			TCTGTGCCAGCGGGCACTGGA	0.557000											OREG0017448	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	47					0	0	1	0	0
OR51I1	390063	broad.mit.edu	37	11	5462694	5462694	+	Silent	SNP	T	T	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr11:5462694T>A	ENST00000380211.1	-	1	50	c.51A>T	c.(49-51)acA>acT	p.T17T	HBG2_ENST00000380252.1_Intron|AC104389.28_ENST00000415970.1_RNA|HBE1_ENST00000380237.1_Intron|HBG2_ENST00000380259.2_Intron	NM_001005288.2	NP_001005288.1	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I, member 1	17					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|endometrium(1)|large_intestine(6)|lung(17)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	30		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGGAATGCCTGTCAGCTGGA	0.522000													26	49					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9069310	9069310	+	Missense_Mutation	SNP	A	A	G			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr19:9069310A>G	ENST00000397910.4	-	3	18339	c.18136T>C	c.(18136-18138)Tct>Cct	p.S6046P		NM_024690.2	NP_078966.2	Q8WXI7	MUC16_HUMAN	mucin 16, cell surface associated	6048	Thr-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						TCCATCATAGATCCAGTAACC	0.458000													45	87					0	0	1	0	0
CHEK2P2	0	broad.mit.edu	37	15	20489434	20489434	+	RNA	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr15:20489434C>T	ENST00000555186.1	+	0	422					NR_038836.1																						CACTGAAGGACCAGATCACCA	0.413000													5	62					0	0	1	0	0
NPIPA5	100288332	broad.mit.edu	37	16	15457701	15457701	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr16:15457701G>A	ENST00000360151.4	-	8	867	c.868C>T	c.(868-870)Ctc>Ttc	p.L290F		NM_001277325.1	NP_001264254.1			nuclear pore complex interacting protein family, member A5									p.L290F(2)									AGGGGAGTGAGCAGACACTCG	0.562000													5	144					0	0	1	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78290635	78290635	+	Missense_Mutation	SNP	C	C	T	rs117285325	by1000genomes	TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr15:78290635C>T	ENST00000409931.3	-	13	2778	c.2707G>A	c.(2707-2709)Gac>Aac	p.D903N	TBC1D2B_ENST00000300584.3_Missense_Mutation_p.R920Q|TBC1D2B_ENST00000492078.1_5'UTR			Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B	0						intracellular	protein binding|Rab GTPase activator activity	p.D903N(3)|p.R920Q(1)		breast(3)|cervix(2)|endometrium(4)|kidney(1)|large_intestine(7)|lung(2)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)	26						GTAGGCGCGTCGGTTCCGGAT	0.617000													3	18					0	0	1	0	0
KIDINS220	57498	broad.mit.edu	37	2	8940605	8940605	+	Silent	SNP	G	G	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr2:8940605G>A	ENST00000256707.3	-	9	1006	c.825C>T	c.(823-825)ggC>ggT	p.G275G	KIDINS220_ENST00000473731.1_Silent_p.G275G|KIDINS220_ENST00000427284.1_Silent_p.G275G|KIDINS220_ENST00000418530.1_Silent_p.G233G|KIDINS220_ENST00000319688.5_Silent_p.G276G	NM_020738.2	NP_065789.1	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate, 220kDa	275					activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(25)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	60	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					CTCTGACAGCGCCAATCAACA	0.373000													5	179					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135487899	135487899	+	Silent	SNP	T	T	C			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chrX:135487899T>C	ENST00000394143.1	+	23	8994	c.8703T>C	c.(8701-8703)taT>taC	p.Y2901Y	GPR112_ENST00000394141.1_Silent_p.Y2696Y|GPR112_ENST00000412101.1_Silent_p.Y2696Y|GPR112_ENST00000370652.1_Silent_p.Y2901Y|GPR112_ENST00000287534.4_Silent_p.Y2654Y	NM_153834.3	NP_722576.3	Q8IZF6	GP112_HUMAN	G protein-coupled receptor 112	2901					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(2)|breast(13)|central_nervous_system(2)|cervix(3)|endometrium(17)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(33)|lung(97)|ovary(5)|pancreas(2)|prostate(4)|skin(10)|upper_aerodigestive_tract(1)|urinary_tract(2)	199	Acute lymphoblastic leukemia(192;0.000127)					TGGTGGCTTATTTTTGCCTCA	0.368000													4	29					0	0	1	0	0
GDE1	51573	broad.mit.edu	37	16	19519049	19519049	+	Missense_Mutation	SNP	T	T	C			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr16:19519049T>C	ENST00000353258.3	-	4	776	c.596A>G	c.(595-597)aAt>aGt	p.N199S		NM_016641.3	NP_057725.1	Q9NZC3	GDE1_HUMAN	glycerophosphodiester phosphodiesterase 1	199	GDPD.				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|glycerophosphoinositol glycerophosphodiesterase activity|metal ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(1)|lung(6)|ovary(2)|prostate(1)	13						GACCACACTATTATTATACAG	0.318000													24	50					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89402162	89402162	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr15:89402162G>A	ENST00000439576.2	+	12	6720	c.6346G>A	c.(6346-6348)Gcc>Acc	p.A2116T	ACAN_ENST00000561243.1_Missense_Mutation_p.A2116T|ACAN_ENST00000352105.7_Missense_Mutation_p.A2116T|ACAN_ENST00000559004.1_Missense_Mutation_p.A2116T	NM_013227.3	NP_037359.3	E7EX88	E7EX88_HUMAN	aggrecan	2116					cell adhesion		hyaluronic acid binding|sugar binding			NS(1)|central_nervous_system(4)|cervix(1)|endometrium(3)|kidney(4)|large_intestine(15)|liver(2)|lung(40)|ovary(2)|prostate(5)|skin(5)|stomach(8)|upper_aerodigestive_tract(1)|urinary_tract(2)	93	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGCATCTGCCGCCCCTGAGGC	0.562000													19	60					0	0	1	0	0
POU2AF1	5450	broad.mit.edu	37	11	111228347	111228347	+	Silent	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr11:111228347C>T	ENST00000393067.3	-	4	793	c.279G>A	c.(277-279)ccG>ccA	p.P93P		NM_006235.2	NP_006226.2	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	93					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			breast(1)|kidney(2)|lung(2)	5		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		GCAGGGTGGCCGGGGTGGGCT	0.627000			T	BCL6	NHL								3	41					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155298502	155298502	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr4:155298502C>T	ENST00000357232.4	-	3	328	c.329G>A	c.(328-330)cGg>cAg	p.R110Q	DCHS2_ENST00000339452.1_Missense_Mutation_p.R716Q	NM_017639.3	NP_060109.2	Q6V1P9	PCD23_HUMAN	dachsous cadherin-related 2		Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(3)|endometrium(8)|kidney(5)|large_intestine(54)|lung(63)|ovary(4)|pancreas(1)|prostate(14)|skin(12)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(2)	176	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AGGGTCGATCCGGAATGCCTG	0.468000													29	59					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42611326	42611326	+	Translation_Start_Site	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr22:42611326C>T	ENST00000359486.3	-	0	122				TCF20_ENST00000335626.4_De_novo_Start_InFrame	NM_005650.1	NP_005641.1	Q9UGU0	TCF20_HUMAN	transcription factor 20 (AR1)						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(7)|large_intestine(13)|lung(22)|ovary(5)|prostate(1)|skin(2)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(5)	66						TTCAGCAGCACAGCAGCAGGC	0.478000													23	56					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46067417	46067417	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr4:46067417C>T	ENST00000295452.4	-	4	673	c.506G>A	c.(505-507)cGa>cAa	p.R169Q		NM_173536.3	NP_775807.2	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma 1	169					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			breast(2)|central_nervous_system(5)|endometrium(3)|kidney(4)|large_intestine(11)|liver(1)|lung(37)|ovary(2)|prostate(5)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	76				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		ATTCCAAATTCGAAGCAGACG	0.323000													21	33					0	0	1	0	0
PDK4	5166	broad.mit.edu	37	7	95217071	95217071	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr7:95217071C>T	ENST00000005178.5	-	8	1035	c.838G>A	c.(838-840)Gtt>Att	p.V280I		NM_002612.3	NP_002603.1	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase, isozyme 4	280	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|liver(1)|lung(4)|skin(1)|upper_aerodigestive_tract(1)	15	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			CCCAAGACAACAATAACCTCT	0.388000													3	34					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70504094	70504094	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr1:70504094C>T	ENST00000310961.5	+	22	2906	c.2488C>T	c.(2488-2490)Cag>Tag	p.Q830*	LRRC7_ENST00000415775.2_Nonsense_Mutation_p.Q109*|LRRC7_ENST00000035383.5_Nonsense_Mutation_p.Q825*			Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	825						centrosome|focal adhesion|nucleolus	protein binding			breast(11)|central_nervous_system(3)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(25)|liver(3)|lung(81)|ovary(9)|pancreas(1)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(2)	162						GGAACTCGAGCAGTCTACACA	0.493000													30	45					0	0	1	0	0
SNX17	9784	broad.mit.edu	37	2	27599352	27599352	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr2:27599352C>T	ENST00000233575.2	+	14	1486	c.1264C>T	c.(1264-1266)Cct>Tct	p.P422S	SNX17_ENST00000542478.1_Missense_Mutation_p.P208S|SNX17_ENST00000543024.1_Missense_Mutation_p.P208S|SNX17_ENST00000537606.1_Missense_Mutation_p.P397S	NM_001267059.1|NM_001267061.1|NM_014748.3	NP_001253988.1|NP_001253990.1|NP_055563.1	Q15036	SNX17_HUMAN	sorting nexin 17	422					cell communication|endosome transport|intracellular protein transport|regulation of endocytosis|signal transduction	cytoplasmic vesicle membrane|cytosol|early endosome|Golgi apparatus	low-density lipoprotein particle receptor binding|phosphatidylinositol binding|protein C-terminus binding			central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(3)|lung(4)|ovary(1)	14	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCAGGAGTCACCTGATGCCAC	0.547000													32	99					0	0	1	0	0
CLEC4A	50856	broad.mit.edu	37	12	8290795	8290795	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr12:8290795G>A	ENST00000229332.5	+	6	873	c.626G>A	c.(625-627)cGt>cAt	p.R209H	CLEC4A_ENST00000360500.3_Missense_Mutation_p.R170H|CLEC4A_ENST00000345999.3_Missense_Mutation_p.R137H|CLEC4A_ENST00000352620.3_Missense_Mutation_p.R176H	NM_016184.3|NM_194447.2|NM_194450.2	NP_057268.1|NP_919429.2|NP_919432.1	Q9UMR7	CLC4A_HUMAN	C-type lectin domain family 4, member A	209	C-type lectin.				cell adhesion|cell surface receptor linked signaling pathway|innate immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity			cervix(1)|endometrium(3)|large_intestine(2)|lung(4)|prostate(1)	11				Kidney(36;0.0915)		CTAAATTTTCGTAAATCACCC	0.433000													9	70					0	0	1	0	0
CHST3	9469	broad.mit.edu	37	10	73767311	73767311	+	Silent	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr10:73767311C>T	ENST00000373115.4	+	3	959	c.522C>T	c.(520-522)ttC>ttT	p.F174F		NM_004273.4	NP_004264.2	Q7LGC8	CHST3_HUMAN	carbohydrate (chondroitin 6) sulfotransferase 3	174					chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity			endometrium(1)|lung(5)	6						CAGTGTCCTTCGAGCCGGGGG	0.647000													6	17					0	0	1	0	0
RAG2	5897	broad.mit.edu	37	11	36615227	36615227	+	Silent	SNP	A	A	G			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr11:36615227A>G	ENST00000311485.3	-	2	653	c.492T>C	c.(490-492)tcT>tcC	p.S164S		NM_000536.3|NM_001243785.1|NM_001243786.1	NP_000527.2|NP_001230714.1|NP_001230715.1	P55895	RAG2_HUMAN	recombination activating gene 2	164					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			breast(1)|endometrium(3)|kidney(1)|large_intestine(1)|lung(18)|ovary(1)|pancreas(2)|prostate(1)|skin(4)	32	all_lung(20;0.226)	all_hematologic(20;0.00756)				TTCTGTGGGTAGAAGGCATGT	0.453000									Familial Hemophagocytic Lymphohistiocytosis				40	63					0	0	1	0	0
CRTC1	23373	broad.mit.edu	37	19	18856727	18856727	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr19:18856727C>T	ENST00000338797.6	+	4	411	c.386C>T	c.(385-387)tCc>tTc	p.S129F	CRTC1_ENST00000601916.1_Missense_Mutation_p.S38F|CRTC1_ENST00000321949.8_Missense_Mutation_p.S113F|CRTC1_ENST00000594658.1_Missense_Mutation_p.S72F	NM_001098482.1	NP_001091952.1	Q6UUV9	CRTC1_HUMAN	CREB regulated transcription coactivator 1	113					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	NS(1)|breast(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(4)|lung(6)|ovary(1)|skin(1)	19						CGGCTCGGCTCCCCACACCGC	0.692000													35	62					0	0	1	0	0
OR5B2	390190	broad.mit.edu	37	11	58190360	58190360	+	Nonsense_Mutation	SNP	G	G	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr11:58190360G>T	ENST00000302581.2	-	1	426	c.375C>A	c.(373-375)tgC>tgA	p.C125*		NM_001005566.2	NP_001005566.1	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B, member 2	125					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.C125C(1)		NS(2)|large_intestine(2)|lung(19)|ovary(3)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	32	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GTAGGGGTTTGCACACTGCTG	0.507000													28	49					1.42536e-11	1.49845e-11	1	1	0
MROH2B	133558	broad.mit.edu	37	5	41048479	41048479	+	Missense_Mutation	SNP	T	T	C			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr5:41048479T>C	ENST00000399564.4	-	16	2081	c.1631A>G	c.(1630-1632)aAa>aGa	p.K544R	MROH2B_ENST00000506092.2_Missense_Mutation_p.K99R	NM_173489.4	NP_775760.3			maestro heat-like repeat family member 2B																		GTCTACCAATTTTGGGTGAAT	0.478000													5	76					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766907	77766907	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr8:77766907G>A	ENST00000521891.2	+	10	8198	c.7750G>A	c.(7750-7752)Gat>Aat	p.D2584N	ZFHX4_ENST00000050961.6_Missense_Mutation_p.D2539N|ZFHX4_ENST00000455469.2_Missense_Mutation_p.D2539N|ZFHX4_ENST00000518282.1_Missense_Mutation_p.D2558N	NM_024721.4	NP_078997.4	Q86UP3	ZFHX4_HUMAN	zinc finger homeobox 4	2539						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(3)|breast(11)|central_nervous_system(1)|endometrium(36)|haematopoietic_and_lymphoid_tissue(2)|kidney(15)|large_intestine(66)|liver(2)|lung(245)|ovary(11)|pancreas(3)|prostate(11)|skin(7)|upper_aerodigestive_tract(13)|urinary_tract(6)	432			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GAAACTAGACGATAAAGAAGA	0.507000										HNSCC(33;0.089)			4	48					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179584367	179584367	+	Missense_Mutation	SNP	G	G	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr2:179584367G>T	ENST00000589042.1	-	82	24076	c.23852C>A	c.(23851-23853)gCc>gAc	p.A7951D	TTN_ENST00000460472.2_Intron|TTN_ENST00000359218.5_Intron|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000342992.6_Missense_Mutation_p.A6707D|TTN_ENST00000342175.6_Intron|TTN_ENST00000591111.1_Missense_Mutation_p.A7634D	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	7634	Ig-like 62.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTCATTTCGGCACAGGGGAT	0.408000													5	117					0.000602214	0.000602214	1	1	0
TGFBI	7045	broad.mit.edu	37	5	135390426	135390426	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr5:135390426C>T	ENST00000442011.2	+	10	1447	c.1286C>T	c.(1285-1287)gCc>gTc	p.A429V	TGFBI_ENST00000305126.8_Missense_Mutation_p.A429V	NM_000358.2	NP_000349.1	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	429	FAS1 3.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(6)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(2)|lung(8)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	32			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCAATTGATGCCCATACAAGG	0.453000													5	333					0	0	1	0	0
SLC41A2	84102	broad.mit.edu	37	12	105198937	105198937	+	Missense_Mutation	SNP	C	C	G			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr12:105198937C>G	ENST00000258538.3	-	10	1842	c.1715G>C	c.(1714-1716)gGa>gCa	p.G572A	SLC41A2_ENST00000549713.1_5'UTR	NM_032148.3	NP_115524.3	Q96JW4	S41A2_HUMAN	solute carrier family 41 (magnesium transporter), member 2	572						integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			breast(1)|endometrium(2)|kidney(3)|large_intestine(2)|lung(6)|ovary(2)|skin(4)|stomach(1)|urinary_tract(1)	22						TTATTAGTCTCCAACATCTCC	0.393000													5	264					0	0	1	0	0
RFXANK	8625	broad.mit.edu	37	19	19309477	19309477	+	Silent	SNP	G	G	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr19:19309477G>A	ENST00000303088.4	+	8	1050	c.576G>A	c.(574-576)acG>acA	p.T192T	RFXANK_ENST00000407360.3_Silent_p.T192T|RFXANK_ENST00000392324.4_Silent_p.T169T|RFXANK_ENST00000456252.3_Silent_p.T170T|RFXANK_ENST00000353145.1_Silent_p.T169T	NM_003721.2	NP_003712.1	O14593	RFXK_HUMAN	regulatory factor X-associated ankyrin-containing protein	192						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			NS(1)|breast(1)|endometrium(1)|lung(8)|ovary(2)|prostate(1)	14			Epithelial(12;0.00228)			ATGGAGGGACGCCACTGCTGT	0.592000													34	61					0	0	1	0	0
AFF2	2334	broad.mit.edu	37	X	148069054	148069054	+	Missense_Mutation	SNP	G	G	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chrX:148069054G>T	ENST00000370460.2	+	20	4260	c.3781G>T	c.(3781-3783)Gat>Tat	p.D1261Y	AFF2_ENST00000370457.5_Missense_Mutation_p.D1226Y|AFF2_ENST00000342251.3_Missense_Mutation_p.D1228Y|AFF2_ENST00000286437.5_Missense_Mutation_p.D902Y	NM_001169123.1|NM_002025.3	NP_001162594.1|NP_002016.2	P51816	AFF2_HUMAN	AF4/FMR2 family, member 2	1261					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			breast(5)|central_nervous_system(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(29)|liver(2)|lung(39)|ovary(4)|pancreas(5)|prostate(1)|skin(7)|upper_aerodigestive_tract(1)|urinary_tract(1)	109	Acute lymphoblastic leukemia(192;6.56e-05)					TGAACACTGGGATATGGCCGA	0.478000													46	23					1.19451e-25	1.28882e-25	1	1	0
OR4S1	256148	broad.mit.edu	37	11	48328501	48328501	+	Missense_Mutation	SNP	A	A	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr11:48328501A>T	ENST00000319988.1	+	1	727	c.727A>T	c.(727-729)Atc>Ttc	p.I243F		NM_001004725.1	NP_001004725.1	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S, member 1	243					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(1)|large_intestine(4)|lung(12)|ovary(1)|skin(3)	21						CTCACACGTAATCACTGTCCT	0.453000													41	93					0	0	1	0	0
RAP2B	5912	broad.mit.edu	37	3	152880765	152880765	+	Missense_Mutation	SNP	C	C	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr3:152880765C>A	ENST00000323534.2	+	1	737	c.283C>A	c.(283-285)Ccc>Acc	p.P95T		NM_002886.2	NP_002877.2	P61225	RAP2B_HUMAN	RAP2B, member of RAS oncogene family	95					Rap protein signal transduction|regulation of protein tyrosine kinase activity	recycling endosome membrane	GTP binding|GTPase activity			NS(1)|kidney(1)|large_intestine(1)|lung(3)|prostate(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0628)|Lung(72;0.11)			GGACATCAAGCCCATGCGGGA	0.612000													4	92					0.00024832	0.000254528	1	1	0
TTN	7273	broad.mit.edu	37	2	179623770	179623770	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr2:179623770G>A	ENST00000589042.1	-	44	10468	c.10244C>T	c.(10243-10245)aCg>aTg	p.T3415M	TTN_ENST00000460472.2_Missense_Mutation_p.T3369M|TTN_ENST00000359218.5_Missense_Mutation_p.T3369M|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000342992.6_Missense_Mutation_p.T3415M|TTN-AS1_ENST00000590773.1_RNA|TTN-AS1_ENST00000610005.1_RNA|TTN_ENST00000342175.6_Missense_Mutation_p.T3369M|TTN_ENST00000591111.1_Missense_Mutation_p.T3415M|TTN-AS1_ENST00000578746.1_RNA|TTN_ENST00000360870.5_Missense_Mutation_p.T3415M	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	3128	Ig-like 20.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCAACAAACGTGTAAGTTCC	0.383000													19	52					0	0	1	0	0
LRRC8B	23507	broad.mit.edu	37	1	90048354	90048354	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr1:90048354C>T	ENST00000330947.2	+	5	505	c.145C>T	c.(145-147)Cag>Tag	p.Q49*	LRRC8B_ENST00000439853.1_Nonsense_Mutation_p.Q49*|LRRC8B_ENST00000358200.4_Nonsense_Mutation_p.Q49*	NM_001134476.1	NP_001127948.1	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member B	49						integral to membrane				breast(1)|central_nervous_system(1)|endometrium(6)|kidney(5)|large_intestine(2)|lung(5)|ovary(2)|prostate(2)|skin(1)|urinary_tract(1)	26		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		CCAGCTGACGCAGAGCAGGGT	0.507000													5	87					0	0	1	0	0
AC007040.8	0	broad.mit.edu	37	2	71283122	71283123	+	RNA	INS	-	-	T	rs35074164		TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr2:71283122_71283123insT	ENST00000434990.1	-	0	61																											GGCACCACCCCCAGGAGTGGTG	0.530													4	7	---	---	---	---					
USP17L17	100287327	broad.mit.edu	37	4	9245880	9245880	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr4:9245880delC	ENST00000511568.1	+	1	276	c.276delC	c.(274-276)aacfs	p.N92fs		NM_001256857.1	NP_001243786.1			ubiquitin specific peptidase 17-like family member 17																		GCTACGTGAACGCTTCCTTGC	0.572													3	3	---	---	---	---					
PKHD1L1	93035	broad.mit.edu	37	8	110464996	110464996	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr8:110464996delG	ENST00000378402.5	+	43	6661	c.6557delG	c.(6556-6558)tggfs	p.W2186fs		NM_177531.4	NP_803875.2	Q86WI1	PKHL1_HUMAN	polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1	2186	G8 1.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			NS(4)|breast(13)|central_nervous_system(6)|cervix(1)|endometrium(19)|kidney(17)|large_intestine(34)|lung(122)|ovary(11)|pancreas(3)|prostate(9)|skin(3)|stomach(4)|upper_aerodigestive_tract(13)|urinary_tract(4)	263			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AATTTCTCATGGGGGGGAAAA	0.388										HNSCC(38;0.096)			2	4	---	---	---	---					
ZFPM1	161882	broad.mit.edu	37	16	88593283	88593283	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr16:88593283delC	ENST00000319555.3	+	5	786	c.464delC	c.(463-465)gccfs	p.A155fs	RP11-21B21.4_ENST00000563243.1_RNA	NM_153813.2	NP_722520.2	Q8IX07	FOG1_HUMAN	zinc finger protein, FOG family member 1	155					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|transcription factor binding|zinc ion binding			central_nervous_system(1)|ovary(2)|urinary_tract(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0478)		CTGCCCCAGGCCCTGACTGAG	0.677													2	4	---	---	---	---					
hsa-mir-6080	0	broad.mit.edu	37	17	62750914	62750914	+	RNA	DEL	T	T	-			TCGA-HC-A6HY-01A-11D-A31L-08	TCGA-HC-A6HY-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	87d9162b-d9e0-48d2-817d-7a3fd2ab5cfe	69ff5580-dfde-4556-8960-ff3975b593be	g.chr17:62750914delT	ENST00000400873.3	-	0	1841					NR_026899.1																						CTGATTATGCttttttttttg	0.433													2	4	---	---	---	---					
