Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SBF1	6305	broad.mit.edu	37	22	50898528	50898528	+	Missense_Mutation	SNP	C	C	T			TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr22:50898528C>T	ENST00000380817.3	-	26	3527	c.3344G>A	c.(3343-3345)cGc>cAc	p.R1115H	SBF1_ENST00000390679.3_Missense_Mutation_p.R1115H|SBF1_ENST00000348911.6_Missense_Mutation_p.R1116H	NM_002972.2	NP_002963.2	O95248	MTMR5_HUMAN	SET binding factor 1						protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity			breast(1)|central_nervous_system(2)|endometrium(6)|kidney(8)|large_intestine(3)|lung(18)|ovary(3)|skin(1)|upper_aerodigestive_tract(1)	43		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CATGGTCATGCGGTCGGAGGG	0.677000													4	43					0	0	1	0	0
OBP2A	29991	broad.mit.edu	37	9	138440527	138440527	+	Missense_Mutation	SNP	T	T	C	rs2590501	by1000genomes	TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr9:138440527T>C	ENST00000340780.3	+	5	469	c.427T>C	c.(427-429)Tgg>Cgg	p.W143R	OBP2A_ENST00000371776.1_Intron|OBP2A_ENST00000539850.1_Intron|OBP2A_ENST00000342114.4_Missense_Mutation_p.L98S			Q9NY56	OBP2A_HUMAN	odorant binding protein 2A	0					response to stimulus|sensory perception of smell	extracellular region	odorant binding|transporter activity			endometrium(1)|large_intestine(4)|lung(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	11				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		GTCCCCACCTTGGCTCACCTG	0.597000													4	40					0	0	1	0	0
SDHAP1	0	broad.mit.edu	37	3	195690192	195690192	+	RNA	SNP	C	C	T	rs112207499	by1000genomes	TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr3:195690192C>T	ENST00000427841.1	-	0	2303					NR_003264.2																						CTGTCATCACCGCATCTTGTC	0.438000													5	15					0	0	1	0	0
WBP11P1	0	broad.mit.edu	37	18	30092418	30092418	+	RNA	SNP	C	C	A	rs76638541	by1000genomes	TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr18:30092418C>A	ENST00000567636.1	+	0	793					NR_003558.1																						TTGGCCCTCCCCCTGGTCCAC	0.552000													5	84					3.59834e-05	3.74827e-05	1	1	0
OBP2A	29991	broad.mit.edu	37	9	138440525	138440525	+	Missense_Mutation	SNP	C	C	G	rs2590500	by1000genomes	TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr9:138440525C>G	ENST00000340780.3	+	5	467	c.425C>G	c.(424-426)cCt>cGt	p.P142R	OBP2A_ENST00000371776.1_Intron|OBP2A_ENST00000539850.1_Intron|OBP2A_ENST00000342114.4_Silent_p.T97T			Q9NY56	OBP2A_HUMAN	odorant binding protein 2A	0					response to stimulus|sensory perception of smell	extracellular region	odorant binding|transporter activity			endometrium(1)|large_intestine(4)|lung(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	11				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		CTGTCCCCACCTTGGCTCACC	0.597000													4	38					0	0	1	0	0
TRGV5	0	broad.mit.edu	37	7	38389455	38389455	+	RNA	SNP	G	G	C			TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr7:38389455G>C	ENST00000390344.2	-	0	168																											TGGAAGGAAAGGGACCAGATG	0.562000													4	35					0	0	1	0	0
CCDC114	93233	broad.mit.edu	37	19	48807367	48807367	+	Silent	SNP	C	C	A	rs28582401	by1000genomes	TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr19:48807367C>A	ENST00000315396.7	-	7	1267	c.585G>T	c.(583-585)ctG>ctT	p.L195L		NM_144577.3	NP_653178.3	Q96M63	CC114_HUMAN	coiled-coil domain containing 114	195										cervix(2)|endometrium(3)|kidney(1)|large_intestine(5)|lung(5)|ovary(1)|pancreas(1)|prostate(3)|skin(2)|stomach(1)	24		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		CGCGCTCCCGCAGCAAGCCCA	0.682000													5	55					5.9392e-07	6.45565e-07	1	1	0
EN1	2019	broad.mit.edu	37	2	119604526	119604528	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr2:119604526_119604528delTGC	ENST00000295206.6	-	1	726_728	c.216_218delGCA	c.(214-219)ccgcac>ccc	p.H73del		NM_001426.3	NP_001417.3	Q05925	HME1_HUMAN	engrailed homeobox 1	73					skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			endometrium(1)|large_intestine(2)|lung(4)|skin(1)|upper_aerodigestive_tract(1)	9						tggggggaggtgcgggtggtggg	0.773													2	4	---	---	---	---					
TRAV9-2	0	broad.mit.edu	37	14	22409533	22409539	+	RNA	DEL	CTCTCTC	CTCTCTC	-	rs57759840		TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr14:22409533_22409539delCTCTCTC	ENST00000390441.2	+	0	102																											ctctctctctctctctctTTTTTTTTT	0.415													3	3	---	---	---	---					
LA16c-306E5.3	0	broad.mit.edu	37	16	3546140	3546141	+	RNA	INS	-	-	A	rs74546027		TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chr16:3546140_3546141insA	ENST00000574423.2	+	0	111																											gactccgtctcaaaaaaaaaaa	0.559													2	4	---	---	---	---					
RP13-228J13.1	0	broad.mit.edu	37	X	154578865	154578865	+	RNA	DEL	G	G	-	rs150846040	by1000genomes	TCGA-KC-A4BO-01A-61D-A257-08	TCGA-KC-A4BO-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	488dd6cb-687e-4246-bd35-d45f3c5fadf1	785ea44e-05df-43df-8acc-c0fda6852721	g.chrX:154578865delG	ENST00000412436.1	-	0	98				RP13-228J13.5_ENST00000453508.1_RNA|RP13-228J13.1_ENST00000444722.1_RNA																							TTTTCTCTCTGTTTTTTTTTT	0.418													3	3	---	---	---	---					
