Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VPS53	55275	broad.mit.edu	37	17	465966	465966	+	Missense_Mutation	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr17:465966C>T	ENST00000437048.2	-	14	1479	c.1333G>A	c.(1333-1335)Gat>Aat	p.D445N	VPS53_ENST00000446250.2_Missense_Mutation_p.D247N|VPS53_ENST00000574029.1_Intron|VPS53_ENST00000576149.1_5'UTR|VPS53_ENST00000571805.1_Missense_Mutation_p.D445N|VPS53_ENST00000291074.5_Missense_Mutation_p.D416N|VPS53_ENST00000401468.3_Missense_Mutation_p.D168N	NM_001128159.2	NP_001121631.1	Q5VIR6	VPS53_HUMAN	vacuolar protein sorting 53 homolog (S. cerevisiae)	445					protein transport	endosome membrane|Golgi apparatus				breast(1)|endometrium(4)|large_intestine(5)|lung(8)|prostate(1)	19				UCEC - Uterine corpus endometrioid carcinoma (25;0.0265)		ACAAACCGATCTATCAGCTCT	0.458000													4	64					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102822797	102822797	+	Missense_Mutation	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr11:102822797C>T	ENST00000260302.3	-	5	771	c.743G>A	c.(742-744)gGc>gAc	p.G248D	MMP13_ENST00000340273.4_Missense_Mutation_p.G248D	NM_002427.3	NP_002418.1	P45452	MMP13_HUMAN	matrix metallopeptidase 13 (collagenase 3)	248					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding	p.G248D(1)		NS(1)|breast(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(15)|ovary(2)|skin(1)|stomach(1)	27		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GTGGCTTTTGCCGGTGTAGGT	0.448000													4	197					0	0	1	0	0
WDR44	54521	broad.mit.edu	37	X	117532360	117532360	+	Missense_Mutation	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chrX:117532360G>A	ENST00000254029.3	+	8	1596	c.1201G>A	c.(1201-1203)Gca>Aca	p.A401T	WDR44_ENST00000371822.5_Missense_Mutation_p.A376T|WDR44_ENST00000371825.3_Missense_Mutation_p.A401T	NM_019045.4	NP_061918.3	Q5JSH3	WDR44_HUMAN	WD repeat domain 44	401						cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				breast(4)|endometrium(2)|kidney(1)|large_intestine(4)|lung(16)|ovary(1)|pancreas(1)|prostate(1)|stomach(2)|upper_aerodigestive_tract(1)	33						TAATGACGCGGCACAGTCAGA	0.363000													3	45					0	0	1	0	0
TEX9	374618	broad.mit.edu	37	15	56680674	56680674	+	Missense_Mutation	SNP	C	C	G			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr15:56680674C>G	ENST00000558083.2	+	4	373	c.43C>G	c.(43-45)Ctg>Gtg	p.L15V	TEX9_ENST00000537232.1_Missense_Mutation_p.L15V|TEX9_ENST00000561221.2_Missense_Mutation_p.L90V|TEX9_ENST00000352903.2_Missense_Mutation_p.L90V			Q8N6V9	TEX9_HUMAN	testis expressed 9	90										cervix(1)|kidney(1)|large_intestine(4)|lung(6)|prostate(1)|skin(1)	14				all cancers(107;0.0394)|GBM - Glioblastoma multiforme(80;0.056)		CTGTAGAGGTCTGTTACCATC	0.308000													17	110					0	0	1	0	0
RPF1	80135	broad.mit.edu	37	1	84948626	84948626	+	Missense_Mutation	SNP	T	T	C			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr1:84948626T>C	ENST00000370654.5	+	3	329	c.314T>C	c.(313-315)aTt>aCt	p.I105T	RPF1_ENST00000370656.1_Missense_Mutation_p.I105T	NM_025065.6	NP_079341.2	Q9H9Y2	RPF1_HUMAN	ribosome production factor 1 homolog (S. cerevisiae)	105					rRNA processing|translation	nucleolus	aminoacyl-tRNA ligase activity|ATP binding|rRNA binding			breast(2)|endometrium(1)|kidney(3)|large_intestine(5)|lung(2)|prostate(1)	14						CCCAAGACCATTGACAACCAG	0.338000													3	38					0	0	1	0	0
INTS4L2	0	broad.mit.edu	37	7	65154327	65154327	+	RNA	SNP	T	T	C			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr7:65154327T>C	ENST00000430126.2	+	0	811																											GCTGTACTAATGTTTCAACCA	0.363000													4	42					0	0	1	0	0
IKBKB	3551	broad.mit.edu	37	8	42171853	42171853	+	Missense_Mutation	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr8:42171853C>T	ENST00000520810.1	+	9	892	c.706C>T	c.(706-708)Cgg>Tgg	p.R236W	IKBKB_ENST00000416505.2_Missense_Mutation_p.R177W|IKBKB_ENST00000379708.3_Missense_Mutation_p.R13W|IKBKB_ENST00000522147.1_Intron|IKBKB_ENST00000520835.1_Missense_Mutation_p.R234W	NM_001556.2	NP_001547.1	O14920	IKKB_HUMAN	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	236	Protein kinase.				anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(4)|lung(1)|ovary(2)|skin(1)	8	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	TTCAAAAGTGCGGCAGAAGAG	0.423000													4	125					0	0	1	0	0
TRUB1	142940	broad.mit.edu	37	10	116698112	116698112	+	Missense_Mutation	SNP	A	A	C			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr10:116698112A>C	ENST00000298746.3	+	1	161	c.100A>C	c.(100-102)Acc>Ccc	p.T34P		NM_139169.4	NP_631908.1	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase family member 1	34					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding	p.T34P(1)		breast(2)|kidney(2)|large_intestine(1)|lung(5)|urinary_tract(2)	12		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		AATGGCTGCGACCCCGTCAGC	0.637000													5	7					0	0	1	0	0
RP11-156P1.3	0	broad.mit.edu	37	17	45128792	45128792	+	RNA	SNP	G	G	T	rs143713325	by1000genomes	TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr17:45128792G>T	ENST00000575173.1	-	0	418																											AATTCAGGTTGTCAGAATGCA	0.373000													4	73					0.00909568	0.00909568	1	1	0
STAG1	10274	broad.mit.edu	37	3	136062803	136062803	+	Missense_Mutation	SNP	A	A	C			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr3:136062803A>C	ENST00000383202.2	-	30	3573	c.3317T>G	c.(3316-3318)aTt>aGt	p.I1106S	STAG1_ENST00000236698.5_Missense_Mutation_p.I1106S|STAG1_ENST00000536929.1_Missense_Mutation_p.I690S|STAG1_ENST00000434713.2_Missense_Mutation_p.I846S	NM_005862.2	NP_005853.2	Q8WVM7	STAG1_HUMAN	stromal antigen 1	1106					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			NS(2)|breast(4)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(16)|lung(16)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	58						AGGAGTCTGAATCATGGTGTC	0.507000													9	71					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713773	142713773	+	RNA	SNP	C	C	G			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr1:142713773C>G	ENST00000610091.1	-	0	1885																											TCTTTTTCCACATTGTCATTT	0.284000													5	101					0	0	1	0	0
TDP1	55775	broad.mit.edu	37	14	90429610	90429610	+	Missense_Mutation	SNP	C	C	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr14:90429610C>A	ENST00000335725.4	+	3	402	c.152C>A	c.(151-153)gCc>gAc	p.A51D	TDP1_ENST00000555880.1_Missense_Mutation_p.A51D|TDP1_ENST00000555565.1_Intron|TDP1_ENST00000393454.2_Missense_Mutation_p.A51D|TDP1_ENST00000393452.3_Missense_Mutation_p.A51D|TDP1_ENST00000357382.3_5'UTR	NM_018319.3	NP_060789.2	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	51					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			NS(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(10)|ovary(3)|prostate(1)|urinary_tract(1)	25		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		TGTTCCGAGGCCCAGAAAGCT	0.488000								Repair of DNA-protein crosslinks					4	57					2.56e-06	2.67636e-06	1	1	0
OLFML2B	25903	broad.mit.edu	37	1	161967655	161967655	+	Silent	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr1:161967655C>T	ENST00000294794.3	-	6	1857	c.1434G>A	c.(1432-1434)acG>acA	p.T478T	OLFML2B_ENST00000367940.2_Silent_p.T479T	NM_015441.1	NP_056256.1	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B	478										breast(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(11)|lung(22)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	48	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			CGGGGCTCAGCGTGGGGCTGG	0.562000													13	195					0	0	1	0	0
MYPOP	339344	broad.mit.edu	37	19	46393884	46393884	+	Silent	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr19:46393884C>T	ENST00000322217.5	-	3	1283	c.1197G>A	c.(1195-1197)ccG>ccA	p.P399P		NM_001012643.2	NP_001012661.1	Q86VE0	MYPOP_HUMAN	Myb-related transcription factor, partner of profilin	399						nucleus	DNA binding			large_intestine(2)|lung(1)|skin(1)	4						GTAGATTTCACGGAGATTTCC	0.642000													3	43					0	0	1	0	0
ADCY6	112	broad.mit.edu	37	12	49170258	49170258	+	Silent	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr12:49170258G>A	ENST00000307885.4	-	6	2182	c.1488C>T	c.(1486-1488)tcC>tcT	p.S496S	ADCY6_ENST00000552090.1_5'UTR|ADCY6_ENST00000357869.3_Silent_p.S496S|ADCY6_ENST00000550422.1_Silent_p.S496S	NM_015270.3	NP_056085.1	O43306	ADCY6_HUMAN	adenylate cyclase 6	496					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding			breast(1)|endometrium(6)|kidney(1)|large_intestine(2)|lung(16)|prostate(1)|skin(1)|urinary_tract(1)	29						TCACATCATTGGACCACACAT	0.647000													5	36					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103017289	103017289	+	Silent	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr7:103017289G>A	ENST00000306312.3	-	19	2268	c.2007C>T	c.(2005-2007)gaC>gaT	p.D669D	SLC26A5_ENST00000393723.1_Silent_p.D639D|SLC26A5_ENST00000354356.4_Silent_p.D102D|SLC26A5_ENST00000393729.1_Silent_p.D632D|SLC26A5_ENST00000393730.1_Silent_p.D637D|SLC26A5_ENST00000339444.6_Silent_p.D669D|SLC26A5_ENST00000432958.2_Silent_p.D637D|SLC26A5_ENST00000393727.1_Silent_p.D671D|SLC26A5_ENST00000356767.4_Intron|SLC26A5_ENST00000393735.2_Intron	NM_198999.2	NP_945350.1	P58743	S26A5_HUMAN	solute carrier family 26 (anion exchanger), member 5	669	STAS.				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			endometrium(5)|kidney(2)|large_intestine(9)|lung(15)|ovary(1)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(5)	43						ATATACCGACGTCTCCATATT	0.308000													4	108					0	0	1	0	0
FANK1	92565	broad.mit.edu	37	10	127693527	127693527	+	Missense_Mutation	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr10:127693527C>T	ENST00000368695.1	+	7	718	c.596C>T	c.(595-597)gCt>gTt	p.A199V	FANK1_ENST00000477963.1_3'UTR|FANK1_ENST00000368693.1_Missense_Mutation_p.A205V	NM_145235.3	NP_660278.3	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains 1	205						cytoplasm|nucleus				central_nervous_system(1)|cervix(1)|endometrium(1)|large_intestine(6)|lung(10)|ovary(1)|urinary_tract(1)	21		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				TCTTGGCAGGCTAGAGACCTG	0.532000													8	92					0	0	1	0	0
TUBBP5	0	broad.mit.edu	37	9	141070139	141070139	+	RNA	SNP	C	C	T	rs143443709	by1000genomes	TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr9:141070139C>T	ENST00000503395.1	+	0	1219																		p.L85F(2)									CGGGCAGGTCCTCAGGCCAGA	0.667000													4	62					0	0	1	0	0
TLE1	7088	broad.mit.edu	37	9	84202651	84202651	+	Missense_Mutation	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr9:84202651C>T	ENST00000376499.3	-	17	2986	c.1922G>A	c.(1921-1923)aGg>aAg	p.R641K		NM_005077.3	NP_005068.2	Q04724	TLE1_HUMAN	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	641					negative regulation of Wnt receptor signaling pathway|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway		transcription factor binding			NS(1)|endometrium(5)|kidney(2)|large_intestine(2)|lung(11)|ovary(1)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	29						GTCCCAGGACCTGACTGTGTT	0.597000													5	62					0	0	1	0	0
OR4C6	219432	broad.mit.edu	37	11	55432865	55432865	+	Missense_Mutation	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr11:55432865G>A	ENST00000314259.3	+	1	252	c.223G>A	c.(223-225)Gtt>Att	p.V75I		NM_001004704.1	NP_001004704.1	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C, member 6	75					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(4)|lung(49)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	71						CTCATCTGTCGTTGCCCCCAA	0.448000													7	118					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19666747	19666747	+	Missense_Mutation	SNP	G	G	C			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr21:19666747G>C	ENST00000284885.3	-	21	2359	c.2326C>G	c.(2326-2328)Ctg>Gtg	p.L776V		NM_002772.2	NP_002763	P98073	ENTK_HUMAN	transmembrane protease, serine 15	776					proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			NS(1)|breast(2)|cervix(1)|endometrium(4)|kidney(7)|large_intestine(19)|lung(36)|ovary(6)|prostate(3)|skin(5)|upper_aerodigestive_tract(1)	85						TGAGCTGCCAGTTTTTTTCCA	0.423000													10	121					0	0	1	0	0
NCAPD3	23310	broad.mit.edu	37	11	134029950	134029950	+	Missense_Mutation	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr11:134029950C>T	ENST00000534548.2	-	29	3768	c.3704G>A	c.(3703-3705)cGa>cAa	p.R1235Q		NM_015261.2	NP_056076.1	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	1235					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			NS(1)|breast(3)|central_nervous_system(2)|cervix(2)|endometrium(10)|kidney(5)|large_intestine(9)|liver(1)|lung(28)|ovary(3)|prostate(4)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	71	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		GAGCTCATCTCGGTAATCCTG	0.488000													10	73					0	0	1	0	0
RP11-156P1.3	0	broad.mit.edu	37	17	45128812	45128812	+	RNA	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr17:45128812C>T	ENST00000575173.1	-	0	418																											AGTCCTGTTTCTGTGTGGATT	0.373000													3	48					0	0	1	0	0
AKR1B15	441282	broad.mit.edu	37	7	134252993	134252993	+	Silent	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr7:134252993G>A	ENST00000457545.2	+	4	494	c.234G>A	c.(232-234)gaG>gaA	p.E78E	AKR1B15_ENST00000423958.1_Silent_p.E50E	NM_001080538.2	NP_001074007.2	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	78							oxidoreductase activity			endometrium(1)|kidney(3)|large_intestine(2)|lung(10)|ovary(1)|urinary_tract(1)	18						ATTTCTATGAGAATCAACATG	0.478000													12	89					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35770839	35770839	+	Missense_Mutation	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr3:35770839C>T	ENST00000187397.4	+	15	1726	c.1270C>T	c.(1270-1272)Cgc>Tgc	p.R424C	ARPP21_ENST00000417925.1_Missense_Mutation_p.R390C|ARPP21_ENST00000458225.1_Missense_Mutation_p.R390C|ARPP21_ENST00000337271.5_Missense_Mutation_p.R370C|ARPP21_ENST00000444190.1_Missense_Mutation_p.R370C	NM_016300.4	NP_057384.2	Q9UBL0	ARP21_HUMAN	cAMP-regulated phosphoprotein, 21kDa	424						cytoplasm	nucleic acid binding			cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(12)|lung(31)|ovary(3)|prostate(4)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	61						ATCGCTGTCCCGCACCCATCC	0.552000													3	44					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139263143	139263143	+	Silent	SNP	C	C	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr8:139263143C>A	ENST00000395297.1	-	6	653	c.483G>T	c.(481-483)ctG>ctT	p.L161L		NM_015912.3	NP_056996.2	Q49AJ0	F135B_HUMAN	family with sequence similarity 135, member B	161								p.L161L(2)		NS(3)|breast(9)|endometrium(21)|kidney(5)|large_intestine(28)|liver(1)|lung(135)|ovary(9)|pancreas(1)|prostate(7)|skin(9)|stomach(1)|upper_aerodigestive_tract(8)|urinary_tract(1)	238	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AGATCACAGACAGGTGGAAAT	0.597000										HNSCC(54;0.14)			19	87					2.35188e-11	2.51597e-11	1	1	0
LAMA4	3910	broad.mit.edu	37	6	112430676	112430676	+	Silent	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr6:112430676G>A	ENST00000230538.7	-	39	5833	c.5436C>T	c.(5434-5436)agC>agT	p.S1812S	LAMA4_ENST00000389463.4_Silent_p.S1805S|LAMA4_ENST00000424408.2_Silent_p.S1805S|LAMA4_ENST00000522006.1_Silent_p.S1805S	NM_001105206.2	NP_001098676.2	Q16363	LAMA4_HUMAN	laminin, alpha 4	1812	Laminin G-like 5.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			NS(1)|breast(6)|central_nervous_system(2)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(18)|lung(42)|ovary(4)|pancreas(1)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(8)	100		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		TTACGGCGCCGCTGACCAGGG	0.532000													3	52					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43816202	43816202	+	Missense_Mutation	SNP	C	C	T			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr15:43816202C>T	ENST00000382031.1	+	5	3276	c.3245C>T	c.(3244-3246)tCa>tTa	p.S1082L	MAP1A_ENST00000300231.5_Missense_Mutation_p.S844L|MAP1A_ENST00000399453.1_Missense_Mutation_p.S844L			P78559	MAP1A_HUMAN	microtubule-associated protein 1A	844						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			breast(5)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(11)|liver(2)|lung(19)|ovary(5)|pancreas(3)|prostate(2)|skin(6)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	66		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	TTTGCCACATCAGTGGCTGAG	0.532000													5	37					0	0	1	0	0
IGHV4-59	0	broad.mit.edu	37	14	107083278	107083278	+	RNA	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr14:107083278G>A	ENST00000455737.1	-	0	365																											ATACACGGCCGTGTCCGCAGC	0.587000													4	226					0	0	1	0	0
WASH3P	0	broad.mit.edu	37	15	102516473	102516473	+	RNA	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr15:102516473G>A	ENST00000557932.1	+	0	1421																				central_nervous_system(1)|endometrium(6)|kidney(11)|prostate(5)|stomach(1)|urinary_tract(1)	25						ATCCTAGGGGGCTCCATGACA	0.642000													4	68					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713774	142713774	+	RNA	SNP	A	A	G			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr1:142713774A>G	ENST00000610091.1	-	0	1884																											CTTTTTCCACATTGTCATTTT	0.284000													5	102					0	0	1	0	0
KRT16	3868	broad.mit.edu	37	17	39767650	39767650	+	Nonsense_Mutation	SNP	G	G	A			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr17:39767650G>A	ENST00000301653.4	-	3	782	c.718C>T	c.(718-720)Cag>Tag	p.Q240*		NM_005557.3	NP_005548.2	P08779	K1C16_HUMAN	keratin 16	240	Coil 1B.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			NS(1)|central_nervous_system(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(2)|lung(9)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	23		Breast(137;0.000307)				CCTTCGATCTGCATCTCCAGG	0.637000													13	98					0	0	1	0	0
RP5-884C9.2	0	broad.mit.edu	37	1	38546374	38546377	+	RNA	DEL	CTTA	CTTA	-			TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr1:38546374_38546377delCTTA	ENST00000432922.1	+	0	301																											CTTTGAAAGGCTTACTTTCAAAAC	0.363													3	4	---	---	---	---					
IGHJ6	0	broad.mit.edu	37	14	106329450	106329451	+	RNA	INS	-	-	ACC	rs74454466	by1000genomes	TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr14:106329450_106329451insACC	ENST00000390560.2	-	0	17_18																											CAGACGTCCATGTAGTAGTAGT	0.540													7	92	---	---	---	---					
TBC1D3P2	0	broad.mit.edu	37	17	60347260	60347260	+	RNA	DEL	T	T	-	rs71816198		TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr17:60347260delT	ENST00000581291.1	-	0	581																				breast(2)|kidney(1)|lung(2)	5						CTCTGAATGATTTTTTTTTTT	0.448													4	8	---	---	---	---					
ANKRD20A11P	0	broad.mit.edu	37	21	15347257	15347258	+	RNA	INS	-	-	A	rs80199214		TCGA-KK-A8I7-01A-21D-A364-08	TCGA-KK-A8I7-11A-12D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ad18700a-4894-4c51-9d92-68514c853b0c	7e2e1f2f-9929-485e-8b8f-cb092a7e3b1c	g.chr21:15347257_15347258insA	ENST00000344693.5	-	0	736					NR_027270.1																						ACCCTGCACAGAAAAAAAGTTG	0.307													4	7	---	---	---	---					
