Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC30A8	169026	broad.mit.edu	37	8	118175681	118175681	+	Silent	SNP	C	C	T			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr8:118175681C>T	ENST00000427715.2	+	9	1028	c.594C>T	c.(592-594)gcC>gcT	p.A198A	SLC30A8_ENST00000521243.1_Silent_p.A198A|SLC30A8_ENST00000456015.2_Silent_p.A247A|SLC30A8_ENST00000519688.1_Silent_p.A198A	NM_001172813.1|NM_001172815.1	NP_001166284.1|NP_001166286.1	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 (zinc transporter), member 8	247					insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			breast(1)|endometrium(2)|large_intestine(9)|liver(2)|lung(18)|ovary(2)|pancreas(2)|skin(5)	41	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			ATAAAATAGCCGACCCAATCT	0.383000													5	44					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85521642	85521642	+	Missense_Mutation	SNP	G	G	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr12:85521642G>A	ENST00000393217.2	+	18	4101	c.4040G>A	c.(4039-4041)cGt>cAt	p.R1347H		NM_001079910.1	NP_001073379.1	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1347	IQ 2.									breast(1)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(21)|liver(1)|lung(28)|ovary(5)|prostate(1)|skin(8)|stomach(2)|upper_aerodigestive_tract(2)	83				GBM - Glioblastoma multiforme(134;0.212)		TCATACTGGCGTGGTTACCTC	0.388000													6	82					0	0	1	0	0
RASA4B	100271927	broad.mit.edu	37	7	102136604	102136604	+	Missense_Mutation	SNP	C	C	T	rs746316		TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr7:102136604C>T	ENST00000465829.1	-	11	1124	c.1054G>A	c.(1054-1056)Gtg>Atg	p.V352M	RASA4B_ENST00000306682.6_Missense_Mutation_p.V280M|RASA4B_ENST00000541662.1_Missense_Mutation_p.V352M|RP11-514P8.8_ENST00000481893.1_RNA					RAS p21 protein activator 4B									p.V352M(1)		skin(1)	1						AAAGACTCCACGGACTTTGAG	0.542000													4	53					0	0	1	0	0
MSH2	4436	broad.mit.edu	37	2	47637343	47637343	+	Silent	SNP	A	A	G			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr2:47637343A>G	ENST00000406134.1	+	3	539	c.477A>G	c.(475-477)agA>agG	p.R159R	MSH2_ENST00000233146.2_Silent_p.R159R|MSH2_ENST00000543555.1_Silent_p.R93R			P43246	MSH2_HUMAN	mutS homolog 2	159					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.0?(2)|p.?(1)		NS(1)|breast(4)|central_nervous_system(2)|cervix(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(9)|kidney(5)|large_intestine(50)|lung(18)|ovary(5)|prostate(2)|skin(3)|small_intestine(1)|stomach(2)|urinary_tract(1)	112		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ATGGCCAGAGACAGGTTGGAG	0.443000			"""D, Mis, N, F, S"""		"""colorectal, endometrial, ovarian"""	"""colorectal, endometrial, ovarian"""		Mismatch excision repair (MMR)	Turcot syndrome;Muir-Torre syndrome;Lynch syndrome;Constitutional Mismatch Repair Deficiency Syndrome				16	155					0	0	1	0	0
ZNF727	442319	broad.mit.edu	37	7	63529386	63529386	+	Missense_Mutation	SNP	T	T	G			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr7:63529386T>G	ENST00000550760.3	+	2	300	c.121T>G	c.(121-123)Ttc>Gtc	p.F41V	RP11-3N2.13_ENST00000445978.1_RNA	NM_001159522.1	NP_001152994.1	A8MUV8	ZN727_HUMAN	zinc finger protein 727	41	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.F41V(1)		endometrium(3)|kidney(2)|skin(1)|stomach(1)|urinary_tract(1)	8						CGGAAACCTGTTCTCCTTGGG	0.383000													3	10					0	0	1	0	0
FANK1	92565	broad.mit.edu	37	10	127585218	127585218	+	Missense_Mutation	SNP	C	C	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr10:127585218C>A	ENST00000368693.1	+	1	111	c.7C>A	c.(7-9)Ccc>Acc	p.P3T	FANK1_ENST00000449042.2_5'UTR|FANK1_ENST00000368695.1_5'UTR			Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains 1	3						cytoplasm|nucleus				central_nervous_system(1)|cervix(1)|endometrium(1)|large_intestine(6)|lung(10)|ovary(1)|urinary_tract(1)	21		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				GACCATGGAGCCCCAGAGTAA	0.761000													3	14					0.115264	0.117884	1	1	0
ANKRD20A5P	0	broad.mit.edu	37	18	14179412	14179412	+	RNA	SNP	A	A	G			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr18:14179412A>G	ENST00000581935.1	+	0	317																				lung(3)	3						GTTCGGCTTCAGGAGCCGCAG	0.607000													4	9					0	0	1	0	0
PCDHB7	0	broad.mit.edu	37	5	140554081	140554081	+	Missense_Mutation	SNP	C	C	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr5:140554081C>A	ENST00000231137.3	+	1	1839	c.1665C>A	c.(1663-1665)aaC>aaA	p.N555K		NM_018940.2	NP_061763.1	Q9Y5E2	PCDB7_HUMAN		555	Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(2)|breast(2)|central_nervous_system(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(20)|lung(54)|ovary(5)|prostate(7)|skin(7)|upper_aerodigestive_tract(4)|urinary_tract(1)	119			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGACGCCAACGACAACTCGC	0.726000													9	49					0.00621372	0.00681993	1	1	0
COL19A1	1310	broad.mit.edu	37	6	70639450	70639450	+	Missense_Mutation	SNP	G	G	C			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr6:70639450G>C	ENST00000322773.4	+	6	626	c.524G>C	c.(523-525)gGc>gCc	p.G175A		NM_001858.4	NP_001849.2	Q14993	COJA1_HUMAN	collagen, type XIX, alpha 1	175	TSP N-terminal.				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			breast(4)|central_nervous_system(3)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(5)|kidney(4)|large_intestine(8)|lung(54)|ovary(3)|prostate(2)|skin(10)|upper_aerodigestive_tract(4)|urinary_tract(2)	109						CACAAACTTGGCATTAGTATA	0.408000													7	55					0	0	1	0	0
RP11-156P1.3	0	broad.mit.edu	37	17	45128792	45128792	+	RNA	SNP	G	G	T	rs143713325	by1000genomes	TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr17:45128792G>T	ENST00000575173.1	-	0	418																											AATTCAGGTTGTCAGAATGCA	0.373000													4	30					0.00909568	0.00974537	1	1	0
DIDO1	11083	broad.mit.edu	37	20	61513251	61513251	+	Missense_Mutation	SNP	C	C	T			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr20:61513251C>T	ENST00000266070.4	-	16	4382	c.4057G>A	c.(4057-4059)Ggg>Agg	p.G1353R	DIDO1_ENST00000395343.1_Missense_Mutation_p.G1353R	NM_033081.2	NP_149072.2	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1	1353					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			NS(6)|breast(5)|central_nervous_system(1)|cervix(3)|endometrium(6)|kidney(1)|large_intestine(17)|lung(39)|ovary(8)|prostate(3)|skin(7)|stomach(2)|upper_aerodigestive_tract(1)	99	Breast(26;5.68e-08)					GCCGGCACCCCGTCCTCTGCT	0.577000													7	83					0	0	1	0	0
PCDH20	64881	broad.mit.edu	37	13	61986869	61986869	+	Missense_Mutation	SNP	T	T	C			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr13:61986869T>C	ENST00000409186.1	-	5	3468	c.1363A>G	c.(1363-1365)Acc>Gcc	p.T455A	PCDH20_ENST00000409204.4_Missense_Mutation_p.T455A			Q8N6Y1	PCD20_HUMAN	protocadherin 20	428	Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|central_nervous_system(2)|endometrium(3)|kidney(4)|large_intestine(14)|liver(1)|lung(23)|ovary(5)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	58		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		TCTCTTATGGTGAAAAACGCA	0.413000													10	93					0	0	1	0	0
FYCO1	79443	broad.mit.edu	37	3	46009701	46009701	+	Silent	SNP	A	A	G			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr3:46009701A>G	ENST00000296137.2	-	8	1330	c.1125T>C	c.(1123-1125)gcT>gcC	p.A375A	FYCO1_ENST00000535325.1_Silent_p.A375A	NM_024513.3	NP_078789.2	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	375					transport	integral to membrane	metal ion binding|protein binding			NS(4)|breast(3)|central_nervous_system(1)|endometrium(11)|kidney(2)|large_intestine(9)|lung(17)|prostate(4)|skin(2)|upper_aerodigestive_tract(1)	54				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		CCTTCTGCTGAGCCATGGCTA	0.577000													5	115					0	0	1	0	0
EHBP1	23301	broad.mit.edu	37	2	63175612	63175612	+	Missense_Mutation	SNP	T	T	C			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr2:63175612T>C	ENST00000263991.5	+	14	2218	c.1736T>C	c.(1735-1737)gTt>gCt	p.V579A	EHBP1_ENST00000405015.3_Missense_Mutation_p.V544A|EHBP1_ENST00000405289.1_Missense_Mutation_p.V544A|EHBP1_ENST00000431489.1_Missense_Mutation_p.V544A|EHBP1_ENST00000354487.3_Missense_Mutation_p.V544A	NM_015252.3	NP_056067.2	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1	579						cytoplasm|membrane				biliary_tract(1)|breast(3)|cervix(1)|endometrium(4)|kidney(4)|large_intestine(8)|lung(22)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	47	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			AACAGTTCTGTTGATCAAGAA	0.403000													5	54					0	0	1	0	0
RP11-423O2.5	0	broad.mit.edu	37	1	142803543	142803543	+	RNA	SNP	C	C	T			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr1:142803543C>T	ENST00000423385.1	-	0	1422																											TGTTGGAATTCCTGATGAATC	0.269000													5	94					0	0	1	0	0
ARAF	369	broad.mit.edu	37	X	47428273	47428273	+	Silent	SNP	G	G	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chrX:47428273G>A	ENST00000377045.4	+	11	1427	c.1233G>A	c.(1231-1233)cgG>cgA	p.R411R		NM_001256196.1|NM_001654.4	NP_001243125.1|NP_001645.1	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene homolog	411	Protein kinase.				intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			biliary_tract(1)|endometrium(4)|large_intestine(7)|liver(2)|lung(11)|ovary(2)|skin(1)|urinary_tract(1)	29					Adenosine triphosphate(DB00171)	ACGTGGCCCGGCAGACTGCCC	0.637000											OREG0019759	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	1					0	0	1	0	0
AQR	9716	broad.mit.edu	37	15	35189761	35189761	+	Splice_Site	SNP	G	G	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr15:35189761G>A	ENST00000156471.5	-	21	2614	c.2389C>T	c.(2389-2391)Cgt>Tgt	p.R797C		NM_014691.2	NP_055506.1	O60306	AQR_HUMAN	aquarius intron-binding spliceosomal factor	797						catalytic step 2 spliceosome	RNA binding			breast(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(10)|lung(18)|ovary(1)|prostate(6)|skin(4)|upper_aerodigestive_tract(2)	57		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		TAAAATTACCGTTTGGGTTGA	0.343000													5	49					0	0	1	0	0
C10orf118	55088	broad.mit.edu	37	10	115887293	115887293	+	Missense_Mutation	SNP	G	G	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr10:115887293G>A	ENST00000369287.3	-	14	2586	c.2320C>T	c.(2320-2322)Cgg>Tgg	p.R774W	C10orf118_ENST00000543782.1_Missense_Mutation_p.R372W	NM_018017.2	NP_060487.2	Q7Z3E2	CJ118_HUMAN	chromosome 10 open reading frame 118	774										NS(1)|autonomic_ganglia(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(5)|lung(9)|ovary(2)	24		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		TCATTTTTCCGGGCATGTGCT	0.383000													5	57					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104063362	104063362	+	Missense_Mutation	SNP	A	A	G			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr12:104063362A>G	ENST00000388887.2	+	21	2420	c.2216A>G	c.(2215-2217)cAg>cGg	p.Q739R		NM_017564.9	NP_060034.9	Q8WWQ8	STAB2_HUMAN	stabilin 2	739	EGF-like 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			NS(4)|breast(7)|central_nervous_system(1)|cervix(1)|endometrium(15)|kidney(11)|large_intestine(26)|lung(77)|ovary(10)|pancreas(1)|prostate(5)|skin(14)|stomach(2)	174						GACTGCAACCAGTGTCCAGGA	0.433000													5	44					0	0	1	0	0
SLC46A3	283537	broad.mit.edu	37	13	29284911	29284911	+	Missense_Mutation	SNP	C	C	T	rs139317940	byFrequency	TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr13:29284911C>T	ENST00000266943.6	-	4	1499	c.1130G>A	c.(1129-1131)cGt>cAt	p.R377H	SLC46A3_ENST00000380814.4_Missense_Mutation_p.R377H	NM_001135919.1|NM_181785.3	NP_001129391.1|NP_861450.1	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3	377					transmembrane transport	integral to membrane				central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(2)|prostate(1)|skin(1)	15		Lung SC(185;0.0367)		all cancers(112;0.159)		TTCAGTCGAACGAACCACTTT	0.383000													4	51					0	0	1	0	0
WTAP	9589	broad.mit.edu	37	6	160157288	160157288	+	Splice_Site	SNP	A	A	T			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr6:160157288A>T	ENST00000358372.4	+	2	1749		c.e2-1		WTAP_ENST00000337387.4_Splice_Site|WTAP_ENST00000494513.1_Splice_Site|SOD2_ENST00000546087.1_Intron	NM_001270531.1|NM_004906.4	NP_001257460.1|NP_004897.2	Q15007	FL2D_HUMAN	Wilms tumor 1 associated protein						cell cycle|mRNA processing|RNA splicing	nuclear membrane|nucleolus				central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(3)|lung(6)|prostate(2)|skin(1)|urinary_tract(1)	18		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.75e-18)|BRCA - Breast invasive adenocarcinoma(81;5.93e-06)		TTTTTTTTTTAGGATTCAAGA	0.318000													4	102					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860790	16860790	+	Missense_Mutation	SNP	G	G	C			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr19:16860790G>C	ENST00000524140.2	+	6	1755	c.1337G>C	c.(1336-1338)cGc>cCc	p.R446P	NWD1_ENST00000379808.3_Missense_Mutation_p.R446P|NWD1_ENST00000552788.1_Missense_Mutation_p.R446P|NWD1_ENST00000549814.1_Missense_Mutation_p.R446P|NWD1_ENST00000523826.1_Missense_Mutation_p.R240P|NWD1_ENST00000339803.6_Missense_Mutation_p.R311P	NM_001007525.3	NP_001007526.3	Q149M9	NWD1_HUMAN	NACHT and WD repeat domain containing 1	446	NACHT.						ATP binding			NS(3)|breast(2)|cervix(1)|endometrium(8)|large_intestine(17)|lung(18)|ovary(2)|pancreas(3)|prostate(5)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	67						GACTCTGTCCGCCATGCTCGG	0.592000													5	38					0	0	1	0	0
LCE4A	199834	broad.mit.edu	37	1	152681746	152681746	+	Missense_Mutation	SNP	C	C	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr1:152681746C>A	ENST00000368777.1	+	2	451	c.195C>A	c.(193-195)caC>caA	p.H65Q	LCE4A_ENST00000335535.3_Missense_Mutation_p.H65Q			Q5TA78	LCE4A_HUMAN	late cornified envelope 4A	65	Cys-rich.				keratinization					endometrium(1)|kidney(1)|large_intestine(2)|lung(5)|skin(1)	10	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.116)			ACCACAGACACCATAGGTCCC	0.622000													6	54					0.00116845	0.0013145	1	1	0
FAM171B	165215	broad.mit.edu	37	2	187626300	187626300	+	Missense_Mutation	SNP	C	C	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr2:187626300C>A	ENST00000304698.5	+	8	1434	c.1231C>A	c.(1231-1233)Cat>Aat	p.H411N		NM_177454.3	NP_803237.3	Q6P995	F171B_HUMAN	family with sequence similarity 171, member B	411						integral to membrane	DNA binding			NS(1)|breast(6)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(10)|lung(22)|ovary(6)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	54						ACACATAAATCATATCAGTAC	0.383000													12	96					0.0167234	0.0175012	1	1	0
ITGA2	3673	broad.mit.edu	37	5	52360743	52360743	+	Splice_Site	SNP	G	G	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr5:52360743G>A	ENST00000296585.5	+	14	1747	c.1604G>A	c.(1603-1605)gGc>gAc	p.G535D		NM_002203.3	NP_002194.2	P17301	ITA2_HUMAN	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	535					axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			breast(3)|central_nervous_system(2)|endometrium(5)|kidney(3)|large_intestine(8)|liver(1)|lung(18)|pancreas(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	47		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				CTTTGCAAGGGCATTTTGGGT	0.448000													6	61					0	0	1	0	0
HNRNPH2	3188	broad.mit.edu	37	X	100667605	100667605	+	Missense_Mutation	SNP	A	A	G			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chrX:100667605A>G	ENST00000316594.5	+	2	707	c.629A>G	c.(628-630)tAt>tGt	p.Y210C		NM_001032393.2|NM_001199973.1|NM_001199974.1|NM_019597.4	NP_001027565.1|NP_001186902.1|NP_001186903.1|NP_062543.1	P55795	HNRH2_HUMAN	heterogeneous nuclear ribonucleoprotein H2 (H')	210					nuclear mRNA splicing, via spliceosome	actin cytoskeleton|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			breast(3)|large_intestine(2)|lung(6)|skin(1)	12						CCAGGTCCCTATGATAGGCCG	0.552000													4	24					0	0	1	0	0
PCNA	5111	broad.mit.edu	37	20	5099414	5099414	+	Splice_Site	SNP	C	C	T	rs112672560		TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr20:5099414C>T	ENST00000379160.3	-	3	562		c.e3+1		PCNA_ENST00000379143.5_Splice_Site	NM_002592.2	NP_002583.1	P12004	PCNA_HUMAN	proliferating cell nuclear antigen						cell proliferation|DNA strand elongation involved in DNA replication|mismatch repair|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|positive regulation of deoxyribonuclease activity|regulation of DNA replication|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair|translesion synthesis	cytoplasm|DNA replication factor C complex|microtubule cytoskeleton|nuclear replication fork|nucleoplasm|PCNA complex|PCNA-p21 complex	dinucleotide insertion or deletion binding|DNA polymerase processivity factor activity|MutLalpha complex binding|purine-specific mismatch base pair DNA N-glycosylase activity			endometrium(2)|kidney(1)|large_intestine(4)|lung(2)	9						GTACGACTTACTTGGTGCTTC	0.413000								DNA polymerases (catalytic subunits)					17	204					0	0	1	0	0
SUZ12P	0	broad.mit.edu	37	17	29061941	29061941	+	RNA	SNP	T	T	C	rs112064181	by1000genomes	TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr17:29061941T>C	ENST00000582557.1	+	0	861																											TAGATTTCTTTGAACTCGGAA	0.303000													6	110					0	0	1	0	0
DFNB59	494513	broad.mit.edu	37	2	179320876	179320876	+	Missense_Mutation	SNP	C	C	T	rs111706634		TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr2:179320876C>T	ENST00000409117.3	+	4	903	c.547C>T	c.(547-549)Cgg>Tgg	p.R183W	DFNB59_ENST00000375129.4_Missense_Mutation_p.R183W|DFNB59_ENST00000605419.1_3'UTR	NM_001042702.3	NP_001036167.1	Q0ZLH3	PJVK_HUMAN	deafness, autosomal recessive 59	183			R -> W (in DFNB59).		sensory perception of sound					breast(2)|endometrium(3)|kidney(2)|large_intestine(2)|lung(8)|upper_aerodigestive_tract(1)	18			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			GGAAGCAATGCGGGTAAACCA	0.443000													3	22					0	0	1	0	0
STIL	6491	broad.mit.edu	37	1	47746429	47746429	+	Silent	SNP	C	C	T			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr1:47746429C>T	ENST00000360380.3	-	13	2064	c.1701G>A	c.(1699-1701)ccG>ccA	p.P567P	STIL_ENST00000337817.5_Silent_p.P567P|STIL_ENST00000243182.6_Silent_p.P567P|STIL_ENST00000371877.3_Silent_p.P567P|STIL_ENST00000396221.2_Silent_p.P567P	NM_001282936.1	NP_001269865.1	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus	567					cell proliferation|multicellular organismal development	centrosome|cytosol				central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(9)|lung(14)|pancreas(1)|skin(1)|upper_aerodigestive_tract(3)	36		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				GTTGGGACTGCGGGGCAAGAG	0.433000													4	71					0	0	1	0	0
RAP1A	5906	broad.mit.edu	37	1	112240073	112240073	+	Missense_Mutation	SNP	T	T	C			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr1:112240073T>C	ENST00000369709.3	+	4	316	c.137T>C	c.(136-138)gTc>gCc	p.V46A	RAP1A_ENST00000494982.1_3'UTR|RAP1A_ENST00000436150.2_Missense_Mutation_p.V46A|RAP1A_ENST00000356415.1_Missense_Mutation_p.V46A|RAP1A_ENST00000545460.1_Missense_Mutation_p.V46A	NM_002884.2	NP_002875.1	P62834	RAP1A_HUMAN	RAP1A, member of RAS oncogene family	46					activation of MAPKK activity|blood coagulation|energy reserve metabolic process|nerve growth factor receptor signaling pathway|regulation of insulin secretion	cytosol|plasma membrane	GTP binding|GTPase activity			endometrium(1)|large_intestine(2)|lung(3)	6		all_cancers(81;6.79e-06)|all_epithelial(167;2.42e-05)|all_lung(203;0.000105)|Lung NSC(277;0.00021)		Lung(183;0.0183)|Colorectal(144;0.0418)|LUSC - Lung squamous cell carcinoma(189;0.0966)|all cancers(265;0.098)|Epithelial(280;0.0981)|COAD - Colon adenocarcinoma(174;0.141)		CAAGTTGAAGTCGATTGCCAA	0.363000													5	66					0	0	1	0	0
MFSD6L	162387	broad.mit.edu	37	17	8702014	8702014	+	Missense_Mutation	SNP	G	G	C			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr17:8702014G>C	ENST00000329805.4	-	1	653	c.425C>G	c.(424-426)gCc>gGc	p.A142G		NM_152599.3	NP_689812.3	Q8IWD5	MFS6L_HUMAN	major facilitator superfamily domain containing 6-like	142						integral to membrane				central_nervous_system(1)|endometrium(1)|kidney(3)|large_intestine(1)|lung(7)|skin(4)	17						AGTCCTCTTGGCTGGGTGGCT	0.587000													5	61					0	0	1	0	0
SLC4A7	9497	broad.mit.edu	37	3	27453211	27453211	+	Missense_Mutation	SNP	T	T	C			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr3:27453211T>C	ENST00000295736.5	-	12	1731	c.1661A>G	c.(1660-1662)aAt>aGt	p.N554S	SLC4A7_ENST00000454389.1_Missense_Mutation_p.N563S|SLC4A7_ENST00000425128.2_Missense_Mutation_p.N546S|SLC4A7_ENST00000388777.4_Missense_Mutation_p.N104S|SLC4A7_ENST00000440156.1_Missense_Mutation_p.N550S|SLC4A7_ENST00000435667.2_Missense_Mutation_p.N439S|SLC4A7_ENST00000446700.1_Missense_Mutation_p.N546S|SLC4A7_ENST00000428386.1_Missense_Mutation_p.N430S|SLC4A7_ENST00000455077.1_Missense_Mutation_p.N435S|SLC4A7_ENST00000437179.1_Missense_Mutation_p.N435S|SLC4A7_ENST00000445684.1_Missense_Mutation_p.N550S	NM_003615.4	NP_003606.3	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate cotransporter, member 7	554						apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			NS(2)|breast(3)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(12)|lung(9)|ovary(4)|skin(1)	38						GGTAGATCCATTGTGAAACAC	0.413000													6	20					0	0	1	0	0
KRTAP4-6	81871	broad.mit.edu	37	17	39296674	39296674	+	Silent	SNP	G	G	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr17:39296674G>A	ENST00000345847.4	-	1	65	c.66C>T	c.(64-66)cgC>cgT	p.R22R		NM_030976.1	NP_112238.1	Q9BYQ5	KRA46_HUMAN	keratin associated protein 4-6	22	29 X 5 AA repeats of C-C-[IRQVEL]-[SPTR]- [STVQRCP].					keratin filament				endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|lung(1)|prostate(1)|urinary_tract(1)	9						AGCAGCTGGGGCGGCAGCAGG	0.632000													4	33					0	0	1	0	0
KRTAP4-6	81871	broad.mit.edu	37	17	39296626	39296626	+	Silent	SNP	G	G	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr17:39296626G>A	ENST00000345847.4	-	1	113	c.114C>T	c.(112-114)ccC>ccT	p.P38P		NM_030976.1	NP_112238.1	Q9BYQ5	KRA46_HUMAN	keratin associated protein 4-6	38	29 X 5 AA repeats of C-C-[IRQVEL]-[SPTR]- [STVQRCP].					keratin filament				endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|lung(1)|prostate(1)|urinary_tract(1)	9						CACAGCAGCTGGGGCGGCAGC	0.667000													3	41					0	0	1	0	0
SLC9C2	284525	broad.mit.edu	37	1	173542454	173542454	+	Missense_Mutation	SNP	T	T	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr1:173542454T>A	ENST00000367714.3	-	9	1335	c.913A>T	c.(913-915)Att>Ttt	p.I305F	SLC9C2_ENST00000466087.1_5'UTR|SLC9C2_ENST00000536496.1_Missense_Mutation_p.I203F|RP3-436N22.3_ENST00000431459.1_RNA	NM_178527.3	NP_848622.2	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member C2 (putative)	305					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity										GATGAAAAAATTCTTAAGAAC	0.269000													6	47					0	0	1	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566931	45566931	+	Missense_Mutation	SNP	A	A	C			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr18:45566931A>C	ENST00000588982.1	-	3	1049	c.548T>G	c.(547-549)aTc>aGc	p.I183S	ZBTB7C_ENST00000332053.2_Missense_Mutation_p.I183S|ZBTB7C_ENST00000535628.2_Missense_Mutation_p.I183S|ZBTB7C_ENST00000590800.1_Missense_Mutation_p.I183S|ZBTB7C_ENST00000586438.1_Missense_Mutation_p.I183S			A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	183						intracellular	nucleic acid binding|zinc ion binding			endometrium(8)|kidney(1)|large_intestine(7)|lung(3)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	23						GTGGCAGCTGATGTCCTGGGG	0.562000													5	55					0	0	1	0	0
SIRPB1	10326	broad.mit.edu	37	20	1592193	1592193	+	Silent	SNP	C	C	T			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr20:1592193C>T	ENST00000279477.7	-	2	307	c.243G>A	c.(241-243)caG>caA	p.Q81Q	SIRPB1_ENST00000381596.1_5'UTR|SIRPB1_ENST00000568365.1_Silent_p.Q81Q|SIRPB1_ENST00000381603.3_Intron|SIRPB1_ENST00000381605.4_Intron|RP4-576H24.4_ENST00000564763.1_Intron	NM_001135844.2	NP_001129316.1	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1	81	Ig-like V-type.				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			central_nervous_system(2)|kidney(2)|large_intestine(4)|lung(16)|ovary(1)|prostate(4)|skin(1)|upper_aerodigestive_tract(1)	31						GGCCTTCTTTCTGATTGTAGA	0.522000													3	18					0	0	1	0	0
SPOP	8405	broad.mit.edu	37	17	47696431	47696431	+	Missense_Mutation	SNP	C	C	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr17:47696431C>A	ENST00000393331.3	-	7	862	c.392G>T	c.(391-393)tGg>tTg	p.W131L	SPOP_ENST00000503676.1_Missense_Mutation_p.W131L|SPOP_ENST00000347630.2_Missense_Mutation_p.W131L|SPOP_ENST00000393328.2_Missense_Mutation_p.W131L|SPOP_ENST00000504102.1_Missense_Mutation_p.W131L	NM_001007226.1|NM_001007227.1	NP_001007227.1|NP_001007228.1	O43791	SPOP_HUMAN	speckle-type POZ protein	131	MATH.|Required for nuclear localization.				mRNA processing	nucleus	protein binding			endometrium(18)|kidney(1)|large_intestine(3)|liver(1)|lung(4)|ovary(3)|prostate(33)	63						CTTGAATCCCCAGTCTTTGCC	0.453000										Prostate(2;0.17)			5	79					0.217242	0.217242	1	1	0
C5orf38	153571	broad.mit.edu	37	5	2755214	2755214	+	Silent	SNP	G	G	A			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr5:2755214G>A	ENST00000397835.4	+	3	405	c.405G>A	c.(403-405)gcG>gcA	p.A135A	C5orf38_ENST00000334000.3_3'UTR			Q86SI9	CEI_HUMAN	chromosome 5 open reading frame 38	0						extracellular region				endometrium(2)|large_intestine(1)|lung(1)	4				GBM - Glioblastoma multiforme(108;0.205)		GAGGCCGAGCGCGAGGAACAG	0.657000													9	53					0	0	1	0	0
SEMA3C	10512	broad.mit.edu	37	7	80418784	80418784	+	Missense_Mutation	SNP	C	C	G			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr7:80418784C>G	ENST00000265361.3	-	12	1753	c.1192G>C	c.(1192-1194)Gtc>Ctc	p.V398L	SEMA3C_ENST00000544525.1_Missense_Mutation_p.V416L|SEMA3C_ENST00000419255.2_Missense_Mutation_p.V398L	NM_006379.3	NP_006370.1	Q99985	SEM3C_HUMAN	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	398	Sema.				immune response|response to drug	membrane	receptor activity			NS(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(17)|ovary(1)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	34						ATAAAAGTGACAACATCATCT	0.388000													3	31					0	0	1	0	0
PRRC2C	23215	broad.mit.edu	37	1	171493968	171493968	+	Frame_Shift_Del	DEL	A	A	-			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr1:171493968delA	ENST00000367742.3	+	10	1306	c.1064delA	c.(1063-1065)caafs	p.Q355fs	PRRC2C_ENST00000338920.4_Frame_Shift_Del_p.Q353fs|PRRC2C_ENST00000476522.1_3'UTR|PRRC2C_ENST00000426496.2_Frame_Shift_Del_p.Q353fs|PRRC2C_ENST00000392078.3_Frame_Shift_Del_p.Q355fs			Q9Y520	PRC2C_HUMAN	proline-rich coiled-coil 2C	353							protein C-terminus binding										AGTGAGGATCAAGGTTCAAAA	0.328													2	4	---	---	---	---					
LINC00969	0	broad.mit.edu	37	3	195400918	195400919	+	RNA	INS	-	-	T	rs55992531	by1000genomes	TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr3:195400918_195400919insT	ENST00000445430.1	+	0	1454																											AGTCttttttctttttttttga	0.525													4	3	---	---	---	---					
AC011516.2	0	broad.mit.edu	37	19	22803277	22803277	+	RNA	DEL	C	C	-			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr19:22803277delC	ENST00000598042.1	-	0	115																											GTGCAGGGGTCCAGAGCCATT	0.597													2	4	---	---	---	---					
ACPT	93650	broad.mit.edu	37	19	51293714	51293716	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chr19:51293714_51293716delCTG	ENST00000270593.1	+	1	43_45	c.43_45delCTG	c.(43-45)ctgdel	p.L20del	ACPT_ENST00000270594.3_In_Frame_Del_p.L20del	NM_033068.2	NP_149059.1	Q9BZG2	PPAT_HUMAN	acid phosphatase, testicular	20						integral to membrane	acid phosphatase activity			central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|lung(6)|skin(3)	11		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TGGACCTCTCctgctgctgctgc	0.709													2	4	---	---	---	---					
RNA5-8SP6	0	broad.mit.edu	37	Y	10037863	10037863	+	RNA	DEL	C	C	-			TCGA-X4-A8KS-01A-12D-A364-08	TCGA-X4-A8KS-10A-01D-A362-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	82e2c88f-f5dd-441d-8a01-80d89c3f693d	a1004109-c2d6-4bb6-8dc9-d41d46ba165a	g.chrY:10037863delC	ENST00000515896.1	+	0	100																											ATCGACACTTCGAACGCACTT	0.552													2	4	---	---	---	---					
