Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KRT4	3851	broad.mit.edu	37	12	53201525	53201525	+	Nonsense_Mutation	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr12:53201525G>A	ENST00000293774.4	-	7	1741	c.1471C>T	c.(1471-1473)Cga>Tga	p.R491*	KRT4_ENST00000458244.2_Nonsense_Mutation_p.R397*|KRT4_ENST00000551956.1_Nonsense_Mutation_p.R417*			B4DRS2	B4DRS2_HUMAN	keratin 4	417						keratin filament	structural molecule activity			endometrium(3)|kidney(4)|large_intestine(6)|lung(8)|ovary(4)|prostate(2)|skin(2)	29						CGCAGCATTCGTGCCAGCTCC	0.602000													34	56					0	0	1	0	0
AP4B1	10717	broad.mit.edu	37	1	114438637	114438637	+	Missense_Mutation	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr1:114438637G>A	ENST00000369569.1	-	9	1814	c.1534C>T	c.(1534-1536)Cgg>Tgg	p.R512W	AP4B1-AS1_ENST00000419536.1_RNA|AP4B1_ENST00000462591.1_5'UTR|AP4B1_ENST00000369567.1_Missense_Mutation_p.R344W|AP4B1_ENST00000256658.4_Missense_Mutation_p.R512W	NM_001253852.1	NP_001240781.1	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1 subunit	512					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			breast(2)|central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(2)|lung(9)|ovary(3)|prostate(3)	25	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCTCGGTCCCGTACAGCCATA	0.423000													6	46					0	0	1	0	0
POC1B	282809	broad.mit.edu	37	12	89885713	89885713	+	Splice_Site	SNP	T	T	G			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr12:89885713T>G	ENST00000393179.4	-	2	675	c.62A>C	c.(61-63)aAa>aCa	p.K21T	POC1B_ENST00000378528.2_Splice_Site_p.K21T|POC1B_ENST00000313546.3_Splice_Site_p.K151T|POC1B_ENST00000541909.1_Splice_Site_p.K21T|POC1B_ENST00000549035.1_Splice_Site_p.K109T|POC1B_ENST00000549504.1_Splice_Site_p.K21T					POC1 centriolar protein B											endometrium(1)|kidney(1)|large_intestine(4)|lung(5)|ovary(1)|prostate(1)|urinary_tract(1)	14						TTGCACTTACTTGGCACAGCG	0.403000													19	100					0	0	1	0	0
SPOP	8405	broad.mit.edu	37	17	47696432	47696432	+	Missense_Mutation	SNP	A	A	C			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr17:47696432A>C	ENST00000393331.3	-	7	861	c.391T>G	c.(391-393)Tgg>Ggg	p.W131G	SPOP_ENST00000347630.2_Missense_Mutation_p.W131G|SPOP_ENST00000504102.1_Missense_Mutation_p.W131G|SPOP_ENST00000503676.1_Missense_Mutation_p.W131G|SPOP_ENST00000393328.2_Missense_Mutation_p.W131G	NM_001007226.1|NM_001007227.1	NP_001007227.1|NP_001007228.1	O43791	SPOP_HUMAN	speckle-type POZ protein	131	MATH.|Required for nuclear localization.				mRNA processing	nucleus	protein binding	p.W131G(2)|p.W131R(1)		endometrium(18)|kidney(1)|large_intestine(3)|liver(1)|lung(4)|ovary(3)|prostate(33)	63						TTGAATCCCCAGTCTTTGCCT	0.458000										Prostate(2;0.17)			45	98					0	0	1	0	0
TRBV6-1	0	broad.mit.edu	37	7	142028343	142028343	+	RNA	SNP	C	C	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr7:142028343C>T	ENST00000390353.2	+	0	134																											GTCACTCAGACCCCAAAATTC	0.522000													23	86					0	0	1	0	0
ANKRD30BP2	0	broad.mit.edu	37	21	14414844	14414844	+	RNA	SNP	T	T	C	rs148060711	by1000genomes	TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr21:14414844T>C	ENST00000507941.1	+	0	95																											ACTGGGCCTGTGCCAATGGCC	0.433000													5	94					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31317789	31317789	+	Missense_Mutation	SNP	C	C	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr5:31317789C>T	ENST00000265071.2	+	11	1905	c.1640C>T	c.(1639-1641)gCg>gTg	p.A547V	CDH6_ENST00000514738.1_Missense_Mutation_p.A492V	NM_004932.3	NP_004923.1	P55285	CADH6_HUMAN	cadherin 6, type 2, K-cadherin (fetal kidney)	547	Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			NS(3)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(9)|lung(42)|ovary(4)|prostate(6)|skin(7)|upper_aerodigestive_tract(2)|urinary_tract(1)	77						GACAACACGGCGGGAATCTTA	0.418000													12	122					0	0	1	0	0
GBF1	8729	broad.mit.edu	37	10	104126872	104126872	+	Missense_Mutation	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr10:104126872G>A	ENST00000369983.3	+	20	2721	c.2461G>A	c.(2461-2463)Gat>Aat	p.D821N		NM_001199378.1|NM_001199379.1|NM_004193.2	NP_001186307.1|NP_001186308.1|NP_004184.1	Q92538	GBF1_HUMAN	golgi brefeldin A resistant guanine nucleotide exchange factor 1	821	SEC7.				COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(14)|kidney(8)|large_intestine(15)|lung(19)|ovary(1)|pancreas(1)|prostate(3)|upper_aerodigestive_tract(3)|urinary_tract(2)	71		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		TGCCAATAGCGATGCCTGCTT	0.483000													6	216					0	0	1	0	0
GDF10	2662	broad.mit.edu	37	10	48429072	48429072	+	Missense_Mutation	SNP	C	C	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr10:48429072C>T	ENST00000224605.2	-	2	1079	c.814G>A	c.(814-816)Gga>Aga	p.G272R		NM_004962.3	NP_004953.1	P55107	BMP3B_HUMAN	growth differentiation factor 10	272					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(4)|lung(20)|skin(1)	31						TCGGGGTCTCCGGCAGGGAAG	0.692000													3	6					0	0	1	0	0
PDXDC2P	0	broad.mit.edu	37	16	70065826	70065826	+	RNA	SNP	T	T	C	rs3169319	by1000genomes	TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr16:70065826T>C	ENST00000531894.1	-	0	796					NR_003610.1													p.M209V(4)									GATCCAAACATAGTGTTACAG	0.453000													4	91					0	0	1	0	0
FGD2	221472	broad.mit.edu	37	6	36993603	36993603	+	Silent	SNP	A	A	G			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr6:36993603A>G	ENST00000274963.8	+	14	1665	c.1494A>G	c.(1492-1494)gaA>gaG	p.E498E		NM_173558.3	NP_775829.2	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	498					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			central_nervous_system(1)|endometrium(6)|large_intestine(5)|lung(7)|ovary(1)|pancreas(1)|prostate(3)|upper_aerodigestive_tract(1)	25						ACCGGGCCGAACTGAAATACG	0.622000													6	48					0	0	1	0	0
CORO2B	10391	broad.mit.edu	37	15	69011503	69011503	+	Missense_Mutation	SNP	C	C	G			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr15:69011503C>G	ENST00000543950.1	+	10	1440	c.1086C>G	c.(1084-1086)gaC>gaG	p.D362E	CORO2B_ENST00000261861.5_Missense_Mutation_p.D362E|CORO2B_ENST00000566799.1_Missense_Mutation_p.D367E|CORO2B_ENST00000540068.1_Missense_Mutation_p.D362E	NM_001190457.1	NP_001177386.1	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	367					actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			kidney(3)|large_intestine(13)|lung(11)|ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(3)	36						ACCAGGAAGACATTTACCCAA	0.572000													8	90					0	0	1	0	0
NEIL1	79661	broad.mit.edu	37	15	75646183	75646183	+	Silent	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr15:75646183G>A	ENST00000564784.1	+	7	1451	c.822G>A	c.(820-822)cgG>cgA	p.R274R	NEIL1_ENST00000569035.1_Silent_p.R274R|NEIL1_ENST00000355059.4_Silent_p.R274R			Q96FI4	NEIL1_HUMAN	nei endonuclease VIII-like 1 (E. coli)	274					base-excision repair|negative regulation of nuclease activity|nucleotide-excision repair|response to oxidative stress	cytoplasm|nucleus	damaged DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|protein C-terminus binding|zinc ion binding	p.R274R(1)		breast(2)|endometrium(2)|large_intestine(4)|lung(4)|ovary(1)	13						TGCAGGACCGGCATGGCCGTA	0.617000								Base excision repair (BER), DNA glycosylases					4	136					0	0	1	0	0
SAP18	10284	broad.mit.edu	37	13	21721465	21721465	+	Missense_Mutation	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr13:21721465G>A	ENST00000382533.4	+	4	542	c.503G>A	c.(502-504)cGc>cAc	p.R168H	SAP18_ENST00000607003.1_Missense_Mutation_p.R149H	NM_005870.4	NP_005861.2	O00422	SAP18_HUMAN	Sin3A-associated protein, 18kDa	149					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|plasma membrane	protein binding|transcription corepressor activity	p.R149H(1)		kidney(1)|large_intestine(1)|lung(4)	6		all_cancers(29;2.16e-20)|all_epithelial(30;2.97e-18)|all_lung(29;4.58e-16)|Lung SC(185;0.0262)|Breast(139;0.147)		all cancers(112;9.79e-05)|Epithelial(112;0.000292)|OV - Ovarian serous cystadenocarcinoma(117;0.00276)|Lung(94;0.0941)		CCTTCAGGGCGCATGAGACCA	0.403000													4	143					0	0	1	0	0
COQ5	84274	broad.mit.edu	37	12	120966916	120966916	+	Nonsense_Mutation	SNP	C	C	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr12:120966916C>T	ENST00000288532.6	-	1	69	c.29G>A	c.(28-30)tGg>tAg	p.W10*	COQ5_ENST00000445328.2_Nonsense_Mutation_p.W10*	NM_032314.3	NP_115690.3	Q5HYK3	COQ5_HUMAN	coenzyme Q5 homolog, methyltransferase (S. cerevisiae)	10					ubiquinone biosynthetic process	mitochondrion	methyltransferase activity			breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(8)|ovary(1)|prostate(1)|urinary_tract(3)	20	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCAATAGCTCCATAGAGCACA	0.662000													5	22					0	0	1	0	0
CHD3	1107	broad.mit.edu	37	17	7804250	7804250	+	Missense_Mutation	SNP	A	A	G			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr17:7804250A>G	ENST00000380358.4	+	19	3237	c.3236A>G	c.(3235-3237)aAt>aGt	p.N1079S	CHD3_ENST00000330494.7_Missense_Mutation_p.N1020S|CHD3_ENST00000358181.4_Missense_Mutation_p.N1020S	NM_001005271.2	NP_001005271.2	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1020	Helicase C-terminal.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(2)|central_nervous_system(1)|cervix(2)|endometrium(11)|kidney(6)|large_intestine(13)|liver(2)|lung(14)|ovary(1)|pancreas(1)|prostate(7)|skin(3)|urinary_tract(2)	65		Prostate(122;0.202)				TCGCTGCTTAATATCATGATG	0.473000													41	79					0	0	1	0	0
ANXA6	309	broad.mit.edu	37	5	150510817	150510817	+	Missense_Mutation	SNP	G	G	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr5:150510817G>T	ENST00000354546.5	-	11	997	c.770C>A	c.(769-771)gCt>gAt	p.A257D	ANXA6_ENST00000356496.5_Missense_Mutation_p.A257D|ANXA6_ENST00000521512.1_Intron|ANXA6_ENST00000377751.5_Intron|ANXA6_ENST00000523714.1_Missense_Mutation_p.A225D	NM_001155.4	NP_001146.2	P08133	ANXA6_HUMAN	annexin A6	257						melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding			endometrium(2)|kidney(1)|lung(9)	12		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAGCCTTTCAGCAAAATATTC	0.527000													4	136					0.0215528	0.0220213	1	1	0
NCOR1	9611	broad.mit.edu	37	17	15964819	15964819	+	Missense_Mutation	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr17:15964819G>A	ENST00000268712.3	-	37	6034	c.5777C>T	c.(5776-5778)aCc>aTc	p.T1926I	NCOR1_ENST00000395851.1_Intron|NCOR1_ENST00000395857.3_Missense_Mutation_p.T510I	NM_006311.3	NP_006302.2	O75376	NCOR1_HUMAN	nuclear receptor corepressor 1	1926	Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			NS(2)|breast(13)|central_nervous_system(2)|cervix(3)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(17)|lung(26)|ovary(1)|prostate(7)|skin(2)|upper_aerodigestive_tract(6)|urinary_tract(10)	107				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TGCAGTAATGGTAGTCTTCCC	0.478000													5	275					0	0	1	0	0
PTCD3	55037	broad.mit.edu	37	2	86354404	86354404	+	Missense_Mutation	SNP	C	C	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr2:86354404C>A	ENST00000254630.7	+	13	1138	c.1072C>A	c.(1072-1074)Cgt>Agt	p.R358S		NM_017952.5	NP_060422.4	Q96EY7	PTCD3_HUMAN	pentatricopeptide repeat domain 3	358						mitochondrion	protein binding			NS(1)|breast(2)|endometrium(3)|kidney(4)|large_intestine(4)|lung(6)|ovary(1)|prostate(1)	22						ACAGGTTTTACGTGAAATGAA	0.448000													32	73					2.42023e-17	2.84377e-17	1	1	0
MAP1B	4131	broad.mit.edu	37	5	71492635	71492635	+	Silent	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr5:71492635G>A	ENST00000296755.7	+	5	3751	c.3453G>A	c.(3451-3453)gaG>gaA	p.E1151E		NM_005909.3	NP_005900.2	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1151						microtubule|microtubule associated complex	structural molecule activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(42)|liver(1)|lung(28)|ovary(1)|pancreas(1)|prostate(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	104		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		ACAATGAAGAGACGGAGTCCC	0.453000													4	39					0	0	1	0	0
TOX4	9878	broad.mit.edu	37	14	21955847	21955847	+	Missense_Mutation	SNP	A	A	G			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr14:21955847A>G	ENST00000405508.1	+	4	589	c.313A>G	c.(313-315)Acc>Gcc	p.T105A	TOX4_ENST00000262709.3_Missense_Mutation_p.T105A|TOX4_ENST00000494242.1_3'UTR|TOX4_ENST00000448790.2_Missense_Mutation_p.T82A			O94842	TOX4_HUMAN	TOX high mobility group box family member 4	105						chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			large_intestine(8)|lung(4)|ovary(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	18	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		TGGGGGCTTGACCATGGTAAG	0.547000													21	56					0	0	1	0	0
NBN	4683	broad.mit.edu	37	8	90965618	90965618	+	Missense_Mutation	SNP	A	A	G			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr8:90965618A>G	ENST00000265433.3	-	11	1853	c.1699T>C	c.(1699-1701)Ttc>Ctc	p.F567L	NBN_ENST00000409330.1_Missense_Mutation_p.F485L	NM_002485.4	NP_002476.2	O60934	NBN_HUMAN	nibrin	567					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator|DNA duplex unwinding|double-strand break repair via homologous recombination|meiosis|mitotic cell cycle G1/S transition checkpoint|mitotic cell cycle G2/M transition DNA damage checkpoint|positive regulation of kinase activity|positive regulation of protein autophosphorylation|regulation of DNA-dependent DNA replication initiation|telomere maintenance	Mre11 complex|nuclear chromosome, telomeric region|nuclear inclusion body|nucleolus|nucleoplasm	protein N-terminus binding|transcription factor binding			autonomic_ganglia(1)|central_nervous_system(3)|endometrium(4)|kidney(3)|large_intestine(2)|lung(7)|prostate(2)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	27			BRCA - Breast invasive adenocarcinoma(11;0.0344)			GTGTCCTTGAATAACTGTTCC	0.348000								Homologous recombination					17	133					0	0	1	0	0
ALG5	29880	broad.mit.edu	37	13	37567800	37567800	+	Missense_Mutation	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr13:37567800G>A	ENST00000239891.3	-	4	361	c.295C>T	c.(295-297)Cct>Tct	p.P99S	ALG5_ENST00000413537.2_Missense_Mutation_p.P99S|ALG5_ENST00000496689.1_5'UTR|ALG5_ENST00000443765.1_Intron	NM_013338.4	NP_037470.1	Q9Y673	ALG5_HUMAN	ALG5, dolichyl-phosphate beta-glucosyltransferase	99					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate beta-glucosyltransferase activity|oligosaccharyl transferase activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(3)|stomach(1)|upper_aerodigestive_tract(1)	11		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)		all cancers(112;5.79e-07)|Epithelial(112;1.81e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00785)|BRCA - Breast invasive adenocarcinoma(63;0.0127)|GBM - Glioblastoma multiforme(144;0.0472)		GTGAACGCAGGATCTCGTTTC	0.313000													7	117					0	0	1	0	0
PRRT2	112476	broad.mit.edu	37	16	29825109	29825109	+	Missense_Mutation	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr16:29825109G>A	ENST00000300797.6	+	2	908	c.734G>A	c.(733-735)cGc>cAc	p.R245H	PRRT2_ENST00000567659.1_Missense_Mutation_p.R245H|PRRT2_ENST00000567551.1_3'UTR|AC009133.20_ENST00000569039.1_RNA|PRRT2_ENST00000358758.7_Missense_Mutation_p.R245H			Q7Z6L0	PRRT2_HUMAN	proline-rich transmembrane protein 2	245					response to biotic stimulus	integral to membrane				central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(3)|ovary(1)|upper_aerodigestive_tract(1)	8						AGCCTGAGCCGCCACCCCAGC	0.637000													7	30					0	0	1	0	0
MAN2B1	4125	broad.mit.edu	37	19	12760801	12760801	+	Missense_Mutation	SNP	G	G	C			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr19:12760801G>C	ENST00000456935.2	-	18	2233	c.2193C>G	c.(2191-2193)agC>agG	p.S731R	MAN2B1_ENST00000221363.4_Missense_Mutation_p.S730R	NM_000528.3|NM_001173498.1	NP_000519.2|NP_001166969.1	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	731					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|lung(10)|ovary(4)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	33						TGTCAAAACGGCTGATGACCT	0.592000													6	183					0	0	1	0	0
FGB	2244	broad.mit.edu	37	4	155490938	155490938	+	Missense_Mutation	SNP	G	G	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr4:155490938G>T	ENST00000302068.4	+	7	1294	c.1231G>T	c.(1231-1233)Gac>Tac	p.D411Y	FGB_ENST00000509493.1_Missense_Mutation_p.D192Y|FGB_ENST00000502545.1_Intron	NM_005141.4	NP_005132.2	P02675	FIBB_HUMAN	fibrinogen beta chain	411	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|liver(2)|lung(22)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	34	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	GTATGACAGAGACAATGACGG	0.428000													14	58					2.62699e-14	3.01143e-14	1	1	0
FRG1B	0	broad.mit.edu	37	20	29625905	29625905	+	Missense_Mutation	SNP	T	T	C	rs137871677	by1000genomes	TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr20:29625905T>C	ENST00000278882.3	+	5	529	c.149T>C	c.(148-150)cTt>cCt	p.L50P	FRG1B_ENST00000439954.2_Missense_Mutation_p.L55P|FRG1B_ENST00000358464.4_Missense_Mutation_p.L50P														p.L50P(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GGAAAATATCTTGGTATAAAT	0.333000													4	94					0	0	1	0	0
MAP2K4	6416	broad.mit.edu	37	17	11958264	11958264	+	Missense_Mutation	SNP	G	G	C			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr17:11958264G>C	ENST00000415385.3	+	3	260	c.207G>C	c.(205-207)agG>agC	p.R69S	MAP2K4_ENST00000353533.5_Missense_Mutation_p.R58S	NM_001281435.1	NP_001268364.1	P45985	MP2K4_HUMAN	mitogen-activated protein kinase kinase 4	58					cellular response to mechanical stimulus|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|JUN kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.0?(10)|p.?(1)		NS(1)|biliary_tract(2)|breast(22)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(26)|lung(15)|ovary(8)|pancreas(11)|skin(3)|stomach(2)|testis(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	100		all_cancers(5;0.0413)|Breast(5;0.000625)|all_epithelial(5;0.00978)|all_lung(20;0.0449)|Lung NSC(33;0.163)		Epithelial(2;4.12e-09)|all cancers(2;6.86e-07)|BRCA - Breast invasive adenocarcinoma(2;8.74e-07)|Colorectal(4;5.32e-05)|COAD - Colon adenocarcinoma(4;0.0039)|READ - Rectum adenocarcinoma(10;0.0681)		CTACAGCAAGGTTTACTCTGA	0.348000			"""D, Mis, N"""		"""pancreatic, breast, colorectal"""								5	51					0	0	1	0	0
CFHR2	3080	broad.mit.edu	37	1	196928040	196928040	+	Nonsense_Mutation	SNP	G	G	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr1:196928040G>T	ENST00000367415.5	+	5	743	c.643G>T	c.(643-645)Gaa>Taa	p.E215*	CFHR2_ENST00000476712.2_Nonsense_Mutation_p.E199*|CFHR2_ENST00000496448.1_3'UTR|CFHR2_ENST00000367421.3_Nonsense_Mutation_p.E215*	NM_005666.2	NP_005657.1	P36980	FHR2_HUMAN	complement factor H-related 2		Sushi 4.					extracellular region				large_intestine(2)|ovary(1)|skin(3)	6						AGAAATTATGGAAAAATATAA	0.284000													9	45					1.76689e-08	1.97724e-08	1	1	0
KRT6C	286887	broad.mit.edu	37	12	52865005	52865005	+	Missense_Mutation	SNP	G	G	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr12:52865005G>T	ENST00000252250.6	-	5	1035	c.988C>A	c.(988-990)Ctg>Atg	p.L330M		NM_173086.4	NP_775109.2	P48668	K2C6C_HUMAN	keratin 6C	330	Linker 12.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			cervix(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(6)|ovary(3)|prostate(2)|skin(2)	23				BRCA - Breast invasive adenocarcinoma(357;0.0828)		ATGCTGTCCAGGTCCAGGTTG	0.562000													4	159					0.184627	0.184627	1	1	0
RP11-114H24.7	0	broad.mit.edu	37	15	78212618	78212618	+	RNA	SNP	A	A	G			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr15:78212618A>G	ENST00000565869.1	+	0	111				RP11-114H24.2_ENST00000567226.1_RNA																							TGTAACCGCCACTGGAGGACC	0.562000													3	27					0	0	1	0	0
CASC4	113201	broad.mit.edu	37	15	44630467	44630467	+	Missense_Mutation	SNP	C	C	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr15:44630467C>T	ENST00000299957.6	+	6	1053	c.754C>T	c.(754-756)Cct>Tct	p.P252S	CASC4_ENST00000345795.2_Missense_Mutation_p.P252S|CASC4_ENST00000360824.3_3'UTR	NM_138423.3	NP_612432.2	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4	252						integral to membrane				NS(1)|breast(1)|endometrium(2)|large_intestine(3)|lung(7)|ovary(1)|urinary_tract(2)	17		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		TGCAGGGATGCCTGGAATAGA	0.338000													3	34					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2886875	2886875	+	Silent	SNP	C	C	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr8:2886875C>T	ENST00000602557.1	-	52	8379	c.7824G>A	c.(7822-7824)acG>acA	p.T2608T	CSMD1_ENST00000542608.1_Silent_p.T2607T|CSMD1_ENST00000520002.1_Silent_p.T2608T|CSMD1_ENST00000602723.1_Silent_p.T2608T|CSMD1_ENST00000537824.1_Silent_p.T2607T|CSMD1_ENST00000400186.3_Silent_p.T2608T			Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1	2608	Sushi 16.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTATGTTCCACGTCCCATTGG	0.522000													10	36					0	0	1	0	0
ZNF507	22847	broad.mit.edu	37	19	32844700	32844700	+	Missense_Mutation	SNP	G	G	A			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr19:32844700G>A	ENST00000311921.4	+	2	1156	c.964G>A	c.(964-966)Gtg>Atg	p.V322M	ZNF507_ENST00000544431.1_Missense_Mutation_p.V322M|ZNF507_ENST00000355898.5_Missense_Mutation_p.V322M	NM_001136156.1|NM_014910.4	NP_001129628.1|NP_055725.2	Q8TCN5	ZN507_HUMAN	zinc finger protein 507						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(2)|breast(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(10)|ovary(1)|pancreas(1)|skin(2)|urinary_tract(1)	31	Esophageal squamous(110;0.162)					TGGGCCATCAGTGCAAGTGCA	0.498000													36	189					0	0	1	0	0
ZNRD1-AS1	0	broad.mit.edu	37	6	29977342	29977342	+	RNA	SNP	A	A	T	rs116382006	by1000genomes	TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr6:29977342A>T	ENST00000376797.3	-	0	731				ZNRD1-AS1_ENST00000420251.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA|HLA-J_ENST00000462773.1_RNA|ZNRD1-AS1_ENST00000448093.1_RNA																							TGGGACTGAGAGGCAAGATTT	0.438000													3	73					0	0	1	0	0
CLN8	2055	broad.mit.edu	37	8	1728426	1728426	+	Missense_Mutation	SNP	C	C	G			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr8:1728426C>G	ENST00000331222.4	+	3	801	c.554C>G	c.(553-555)tCc>tGc	p.S185C	CLN8_ENST00000523237.1_3'UTR	NM_018941.3	NP_061764.2	Q9UBY8	CLN8_HUMAN	ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	185	TLC.				cell death|ceramide biosynthetic process|cholesterol metabolic process|lipid transport|negative regulation of proteolysis|phospholipid metabolic process	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to membrane				central_nervous_system(1)|endometrium(3)|kidney(4)|large_intestine(4)|lung(7)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	24		Ovarian(12;0.0563)|Colorectal(14;0.0815)|Hepatocellular(245;0.0831)		BRCA - Breast invasive adenocarcinoma(11;7.67e-05)|READ - Rectum adenocarcinoma(644;0.0913)		GCGGGCTGGTCCGAGTCTCTG	0.463000													13	59					0	0	1	0	0
CDCA2	157313	broad.mit.edu	37	8	25340925	25340925	+	Missense_Mutation	SNP	A	A	T			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr8:25340925A>T	ENST00000330560.3	+	9	1520	c.1043A>T	c.(1042-1044)aAc>aTc	p.N348I	CDCA2_ENST00000380665.3_Missense_Mutation_p.N333I|CDCA2_ENST00000521098.2_3'UTR	NM_152562.2	NP_689775.2	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	348					cell division|mitosis	cytoplasm|nucleus				breast(3)|cervix(1)|endometrium(3)|kidney(7)|large_intestine(7)|lung(10)|ovary(1)|prostate(3)	35		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		GAACACTGTAACAACCTCTAT	0.323000													31	60					0	0	1	0	0
CTNNAL1	8727	broad.mit.edu	37	9	111714527	111714527	+	Missense_Mutation	SNP	G	G	C			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr9:111714527G>C	ENST00000374595.4	-	14	1876	c.1797C>G	c.(1795-1797)aaC>aaG	p.N599K	CTNNAL1_ENST00000374594.1_5'UTR|CTNNAL1_ENST00000325580.6_Missense_Mutation_p.N515K|CTNNAL1_ENST00000325551.4_Missense_Mutation_p.N599K			Q9UBT7	CTNL1_HUMAN	catenin (cadherin-associated protein), alpha-like 1	599					cell adhesion|Rho protein signal transduction	actin cytoskeleton|cytosol|plasma membrane	cadherin binding|structural molecule activity			cervix(1)|endometrium(2)|kidney(1)|large_intestine(9)|lung(5)|ovary(1)|prostate(4)|urinary_tract(2)	25				STAD - Stomach adenocarcinoma(157;0.0768)		TACTGGACATGTTCCGTCCAT	0.358000													24	53					0	0	1	0	0
INTS7	25896	broad.mit.edu	37	1	212115191	212115193	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr1:212115191_212115193delTGC	ENST00000366994.3	-	20	2966_2968	c.2862_2864delGCA	c.(2860-2865)cagcaa>caa	p.954_955QQ>Q	INTS7_ENST00000366993.3_In_Frame_Del_p.940_941QQ>Q|INTS7_ENST00000366992.3_In_Frame_Del_p.934_935QQ>Q|INTS7_ENST00000469606.1_5'UTR|INTS7_ENST00000440600.2_In_Frame_Del_p.905_906QQ>Q	NM_001199811.1|NM_001199812.1|NM_015434.3	NP_001186740.1|NP_001186741.1|NP_056249.1	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	954	Gln-rich.				snRNA processing	integrator complex	protein binding			NS(1)|breast(1)|kidney(1)|large_intestine(8)|lung(6)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	20				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		GGCATTGCGTTGCTGCTGCTGCT	0.443													7	189	---	---	---	---					
COL26A1	136227	broad.mit.edu	37	7	101188813	101188813	+	RNA	DEL	G	G	-	rs60933561		TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr7:101188813delG	ENST00000313669.7	+	0	1048				COL26A1_ENST00000528707.1_RNA|COL26A1_ENST00000397927.3_RNA	NM_133457.2	NP_597714.2			collagen, type XXVI, alpha 1																		GCTGAGCTACGCTGTGTTCTG	0.622													11	15	---	---	---	---					
TPP1	1200	broad.mit.edu	37	11	6636110	6636111	+	Frame_Shift_Ins	INS	-	-	C			TCGA-Y6-A8TL-01A-21D-A377-08	TCGA-Y6-A8TL-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4f907297-ae7b-4418-8f9c-44dec3b16e05	bd88704d-1edf-4179-a293-d9823e1d7945	g.chr11:6636110_6636111insC	ENST00000533371.1	-	11	1606_1607	c.808_809insG	c.(808-810)gcafs	p.A270fs	TPP1_ENST00000299427.6_Frame_Shift_Ins_p.A513fs			O14773	TPP1_HUMAN	tripeptidyl peptidase I	513					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity			breast(2)|central_nervous_system(1)|endometrium(2)|large_intestine(6)|lung(9)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	23		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		AAAGAGTCCTGCCCCATGCTGC	0.540													120	314	---	---	---	---					
