Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
mirmap16	mature.16.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	stdout.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirmap16	mature.16.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	READ.miRseq_mature_RPM_log2.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirmap16	mature.16.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	READ.miRseq_mature_RPM.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirmap16	mature.16.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	stderr.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirfile	READ.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_READ.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	stdout.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirfile	READ.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_READ.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	READ.miRseq_mature_RPM_log2.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirfile	READ.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_READ.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	READ.miRseq_mature_RPM.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirfile	READ.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_READ.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.2015040200.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	stderr.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirmapcurrent	mature.21.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	stdout.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirmapcurrent	mature.21.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	READ.miRseq_mature_RPM_log2.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirmapcurrent	mature.21.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	READ.miRseq_mature_RPM.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
mirmapcurrent	mature.21.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:20	miRseq_Mature_Preprocess_2015040200	stderr.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_READ.miRseq_Mature_Preprocess.Level_3.2015040200.0.0	yes
