stddata__2015_04_02 Samples Report
- Overview
+ Introduction
- Summary

There were 159 redactions, 3166 replicate aliquots, 23 blacklisted aliquots, and 685 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF
ACC 92 92 90 0 80 0 79 0 80 46 90 0
BLCA 412 393 410 112 412 0 408 0 409 127 130 395
BRCA 1098 1080 1089 19 1081 526 1093 0 1078 410 977 0
CESC 307 304 295 0 307 0 304 0 307 173 194 0
CHOL 36 36 36 0 36 0 36 0 36 30 35 0
COAD 460 453 450 69 457 153 457 0 406 331 154 367
COADREAD 631 624 615 104 622 222 623 0 549 461 223 489
DLBC 58 47 48 0 48 0 28 0 47 33 0 0
ESCA 185 174 184 32 185 0 184 0 184 126 0 0
FPPP 38 38 0 0 0 0 0 0 22 0 0 0
GBM 613 592 577 0 420 540 160 565 0 214 290 290
GBMLGG 1129 1067 1090 52 936 567 676 565 512 472 576 803
HNSC 528 522 522 108 528 0 520 0 523 212 279 508
KICH 113 110 66 0 66 0 66 0 66 0 66 66
KIPAN 973 914 883 0 892 88 889 0 873 661 644 678
KIRC 537 533 528 0 535 72 533 0 516 454 417 451
KIRP 323 271 289 0 291 16 290 0 291 207 161 161
LAML 200 200 197 0 194 0 179 0 188 0 197 0
LGG 516 475 513 52 516 27 516 0 512 258 286 513
LIHC 377 363 370 0 377 0 371 0 372 0 198 0
LUAD 585 521 516 120 578 32 515 0 513 181 230 542
LUSC 504 495 501 0 503 154 501 0 478 195 178 0
MESO 87 77 87 0 87 0 86 0 87 0 0 0
OV 602 591 586 0 594 574 296 570 453 412 316 469
PAAD 185 174 184 0 184 0 178 0 178 106 146 0
PCPG 179 179 175 0 179 0 179 0 179 80 178 0
PRAD 499 489 492 115 498 0 497 0 494 352 425 0
READ 171 171 165 35 165 69 166 0 143 130 69 122
SARC 260 250 256 0 260 0 258 0 258 221 0 0
SKCM 470 447 469 118 470 0 468 0 448 204 343 366
STAD 443 438 442 107 443 0 274 0 442 264 289 0
STES 628 612 626 139 628 0 458 0 626 390 289 0
TGCT 150 133 150 0 150 0 150 0 150 118 149 0
THCA 503 501 501 98 503 0 501 0 502 222 402 0
THYM 124 122 123 0 124 0 120 0 124 90 0 0
UCEC 560 537 540 106 547 54 545 0 538 200 248 0
UCS 57 57 56 0 57 0 57 0 56 48 57 0
UVM 80 80 80 0 80 0 80 0 80 12 80 0
Totals 11352 10945 10987 1091 10955 2217 10095 1135 10160 5456 6584 4250
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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