Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SRRM1	10250	ucsc.edu	37	1	24978030	24978030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SRRM1-93	NM_005839	exon6	c.G652A	p.E218K	AAGAAGGAAAAAA	.	97	1	94	1	.	9	9	0	0	0
MAST2	23139	bcgsc.ca	37	1	46493460	46493460	+	Missense_Mutation	SNP	T	T	G	rs1707336	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	MAST2-581	NM_015112	exon17	c.T1977G	p.I659M	CAAAATTGGCCTC	.	217	6	197	0	G|0.475;N|0.000	10	10	0	0	0
HIST2H3D	653604	broad.mit.edu	37	1	149784860	149784861	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	HIST2H3D-22	NM_001123375	exon1	c.376_377del	p.126_126del	GCCAACTGGATGT	.	611	11	315	0	.	0	0	0	0	0
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	DENND4B-69	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	113	6	63	0	.	5	5	0	0	0
FRMD4A	55691	hgsc.bcm.edu	37	10	13699100	13699100	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	FRMD4A-229	NM_018027	exon22	c.C2489A	p.S830X	TACTGCGAGCTGG	.	28	20	5	0	.	0	0	0	0	0
STAM	8027	broad.mit.edu	37	10	17730077	17730077	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	STAM-154	NM_003473	exon5	c.G349C	p.D117H	TGGACAGATGAAT	.	117	4	120	0	.	5	5	0	0	0
IDE	3416	broad.mit.edu	37	10	94268534	94268534	+	Silent	SNP	G	G	T	rs201815833	alternate_allele	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	IDE-92	NM_004969	exon7	c.C1011A	p.L337L	CCCAATGAGATGA	.	109	5	111	0	.	16	16	0	0	0
ERLIN1	10613	bcgsc.ca	37	10	101912064	101912064	+	Missense_Mutation	SNP	T	T	C	rs2862954	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_006459	exon11	c.A871G	p.I291V	AAGCAATGGCCTG	.	180	6	150	1	A|0.005;C|0.270	24	24	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	MUC2-90	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC	.	132	4	86	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1271221	1271221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_002458	exon31	c.A13111G	p.T4371A	AAGGCCACCACGA	.	549	23	462	0	.	0	0	0	0	0
SYT8	90019	bcgsc.ca	37	11	1858262	1858262	+	Missense_Mutation	SNP	C	C	T	rs484955	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SYT8-91	NM_138567	exon8	c.C908T	p.T303M	AGGGCACGGCGGC	.	121	8	189	1	C|0.863;T|0.137	0	0	0	0	0
PGAP2	27315	broad.mit.edu	37	11	3845156	3845156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PGAP2-90	NM_001256236	exon5	c.A563G	p.E188G	GCGGGGAGGTGCC	.	81	30	20	3	.	10	10	0	0	0
PTPRJ	5795	bcgsc.ca	37	11	48166267	48166267	+	Missense_Mutation	SNP	G	G	C	rs4752904	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PTPRJ-541	NM_002843	exon13	c.G2616C	p.E872D	GTATGAGGATTTC	.	112	5	133	1	G|0.569;C|0.431	0	0	0	0	0
ATN1	1822	hgsc.bcm.edu;ucsc.edu	37	12	7045900	7045900	+	Silent	SNP	G	G	A	rs142238167	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ATN1-139	NM_001007026	exon5	c.G1470A	p.Q490Q	GCAGCAGCAGCAG	.	209	18	118	0	G|0.985;A|0.015	252	247	5	0	0
ATN1	1822	ucsc.edu	37	12	7045906	7045906	+	Silent	SNP	G	G	A	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ATN1-139	NM_001007026	exon5	c.G1476A	p.Q492Q	GCAGCAGCAGCAG	.	195	27	98	0	.	364	361	3	0	0
ATN1	1822	hgsc.bcm.edu	37	12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	rs199988271	alternate_allele	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	194	20	81	0	G|0.999;A|0.001	344	344	0	0	0
TAS2R46	259292	hgsc.bcm.edu	37	12	11214495	11214510	+	Frame_Shift_Del	DEL	TAGTATCACCAGAACA	TAGTATCACCAGAACA	-	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	TAGTATCACCAGAACA	TAGTATCACCAGAACA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TAS2R46-1	NM_176887	exon1	c.384_399del	p.128_133del	CCCCAATAGTATC	.	231	0	125	0	.	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	373	38	252	37	G|0.998;A|0.002	1150	386	764	0	0
FAM186A	121006	broad.mit.edu	37	12	50744753	50744753	+	Silent	SNP	T	T	C	rs10506292	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	FAM186A-68	NM_001145475	exon4	c.A5862G	p.K1954K	CAATCTTTTCTTA	.	116	4	69	0	T|0.350;C|0.650	0	0	0	0	0
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51072495	51072495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	DIP2B-95	NM_173602	exon8	c.A950G	p.E317G	AGCCGGAGGGACG	.	240	25	136	0	.	12	10	2	0	0
WSCD2	9671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108589790	108589790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	WSCD2-136	NM_014653	exon2	c.G181T	p.G61C	GCTGAGGGTGCTG	.	339	74	173	1	.	1	1	0	0	0
TAOK3	51347	broad.mit.edu	37	12	118610311	118610311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TAOK3-933	NM_016281	exon17	c.G1850A	p.R617Q	ATTTTCCGCTTGA	.	494	10	264	0	.	56	54	2	0	0
FZD10	11211	broad.mit.edu	37	12	130647553	130647553	+	Missense_Mutation	SNP	C	C	A	rs200800452		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	FZD10-658	NM_007197	exon1	c.C66A	p.S22R	CATCAGCTCCATG	.	244	17	71	1	.	0	0	0	0	0
RNF17	56163	broad.mit.edu	37	13	25367256	25367256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	RNF17-228	NM_001184993	exon10	c.G1012T	p.D338Y	TGTTACGATACAT	.	126	3	103	0	.	0	0	0	0	0
FRY	10129	bcgsc.ca	37	13	32811974	32811974	+	Missense_Mutation	SNP	C	C	T	rs73169136	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	FRY-142	NM_023037	exon44	c.C6269T	p.A2090V	TCCAGGCACAGCT	.	211	7	149	0	C|0.990;T|0.010	10	10	0	0	0
RNASE4	6038	bcgsc.ca	37	14	21167576	21167576	+	Missense_Mutation	SNP	A	A	T	rs3748338	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	RNASE4-514	NM_002937	exon2	c.A46T	p.T16S	CTGCTGACCCTGC	.	57	4	59	0	A|0.887;N|0.000	2	2	0	0	0
ANKRD34C	390616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	79587017	79587017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_001146341	exon2	c.C1391T	p.P464L	TCCTGCCGCCTTT	.	84	6	73	0	.	0	0	0	0	0
C15orf37	283687	bcgsc.ca	37	15	80216532	80216532	+	RNA	SNP	A	A	T	rs2733101	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	.	.	.	.	TAACCGATGCCTA	.	122	5	90	0	A|0.380;T|0.620	0	0	0	0	0
KREMEN2	79412	hgsc.bcm.edu	37	16	3017992	3017992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KREMEN2-659	NM_172229	exon9	c.T1360C	p.S454P	CAGAGCTCCCTGC	.	9	5	0	0	.	4	1	3	0	0
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	RRN3-91	NM_018427	exon1	c.C31T	p.P11S	CTCCCGGCAAACG	.	407	11	88	2	G|0.997;A|0.003	27	27	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	RRN3-91	NM_018427	exon1	c.C25T	p.R9C	GCAAACGCGTGTG	.	382	11	80	2	G|0.997;A|0.003	21	21	0	0	0
C16orf88	400506	broad.mit.edu	37	16	19722724	19722724	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	C16orf88-68	NM_001012991	exon3	c.957delA	p.K319fs	GTTGCCTTTTTTT	.	333	8	155	0	.	0	0	0	0	0
SEZ6L2	26470	hgsc.bcm.edu;ucsc.edu	37	16	29884982	29884982	+	Missense_Mutation	SNP	C	C	T	rs146085461		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SEZ6L2-92	NM_001243332	exon13	c.G2173A	p.V725I	AGCCAACGGGGAA	.	117	53	18	0	C|1.000;T|0.000	38	9	29	0	0
DHODH	1723	bcgsc.ca	37	16	72042682	72042682	+	Missense_Mutation	SNP	A	A	C	rs3213422	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	DHODH-227	NM_001361	exon1	c.A19C	p.K7Q	CACCTGAAAGTGA	.	493	11	187	0	A|0.433;C|0.567	0	0	0	0	0
TBC1D26	353149	broad.mit.edu	37	17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G	rs202131240		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TBC1D26-90	NM_178571	exon7	c.A296G	p.Y99C	GAGTATACAAAGT	.	208	4	191	0	.	0	0	0	0	0
KRT12	3859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39021191	39021191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KRT12-91	NM_000223	exon3	c.G674A	p.R225H	CCCTGGCGCAGGG	.	131	56	94	0	.	0	0	0	0	0
KLHL10	317719	broad.mit.edu;bcgsc.ca	37	17	40004254	40004254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KLHL10-227	NM_152467	exon5	c.C1522T	p.R508C	ACTTGGCGCACAA	.	393	9	323	1	.	0	0	0	0	0
ENOSF1	55556	broad.mit.edu	37	18	683362	683362	+	Missense_Mutation	SNP	G	G	A	rs142662421	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ENOSF1-91	NM_202758	exon11	c.C823T	p.R275C	CCCAGCGCTGGTT	.	252	5	231	0	G|0.999;A|0.001	37	37	0	0	0
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24951320	24951320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	NCOA1-228	NM_147223	exon14	c.C2861T	p.A954V	ACAGAGCTCTGGG	.	64	27	64	0	.	24	13	11	0	0
ST6GAL2	84620	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	107423245	107423245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ST6GAL2-191	NM_032528	exon6	c.G1479T	p.Q493H	CAGGCGCTGCACC	.	159	32	120	1	.	0	0	0	0	0
FAM171B	165215	ucsc.edu	37	2	187559047	187559047	+	Silent	SNP	G	G	A	rs73979342		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	FAM171B-141	NM_177454	exon1	c.G147A	p.Q49Q	GCAGCAGCAACAA	.	135	16	88	0	G|0.500;A|0.500	29	18	11	0	0
SLC23A2	9962	hgsc.bcm.edu	37	20	4850569	4850569	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SLC23A2-92	NM_203327	exon12	c.1233delC	p.P411fs	GTGGATGGGGGGG	.	405	11	183	2	.	0	0	0	0	0
RBM12	10137	ucsc.edu	37	20	34240740	34240740	+	Silent	SNP	A	A	G	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	RBM12-93	NM_001198840	exon2	c.T2505C	p.P835P	TGGGCCAGGGCCG	.	41	6	23	0	.	27	27	0	0	0
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31495743	31495743	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SMTN-154	NM_001207017	exon20	c.C2719T	p.Q907X	GACATCCAGAACT	.	150	8	118	0	.	1	1	0	0	0
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37462261	37462261	+	Silent	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TMPRSS6-292	NM_153609	exon18	c.G2295A	p.P765P	CACCAGCGGACCA	.	185	47	88	0	.	0	0	0	0	0
NBEAL2	23218	broad.mit.edu	37	3	47043602	47043602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	NBEAL2-69	NM_015175	exon31	c.G4975A	p.E1659K	GCTGCAGAGCGCT	.	73	3	35	0	.	4	4	0	0	0
PLXND1	23129	bcgsc.ca	37	3	129285429	129285429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PLXND1-90	NM_015103	exon23	c.C4132A	p.L1378I	AGTTGAGGGTCTG	.	79	4	63	0	.	30	30	0	0	0
MUC4	4585	bcgsc.ca	37	3	195505805	195505805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	MUC4-90	NM_018406	exon2	c.T12646G	p.S4216A	ATGCTGAGGAAGT	.	646	34	306	8	.	0	0	0	0	0
UGT2B15	7366	bcgsc.ca	37	4	69536084	69536084	+	Missense_Mutation	SNP	A	A	C	rs1902023	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	UGT2B15-46	NM_001076	exon1	c.T253G	p.Y85D	CCAAATAATTTTT	.	289	10	294	2	A|0.468;C|0.532	0	0	0	0	0
ADH1A	124	ucsc.edu	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ADH1A-227	NM_000667	exon6	c.G759A	p.E253E	TAGCACCTCCTGG	.	404	15	282	16	.	1788	1	1785	1	1
PCDHB3	56132	ucsc.edu	37	5	140482342	140482342	+	Silent	SNP	T	T	C	rs17844403	bycluster;byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PCDHB3-92	NM_018937	exon1	c.T2109C	p.F703F	CCTCTTTTCGGTG	.	67	9	11	0	T|0.997;C|0.003	34	10	24	0	0
PRRC2A	7916	broad.mit.edu	37	6	31597341	31597358	+	In_Frame_Del	DEL	AGCAGCAGCAGCACCAGT	AGCAGCAGCAGCACCAGT	-	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PRRC2A-156	NM_004638	exon14	c.1973_1990del	p.658_664del	TGAAGCAGCAGCA	.	6	4	4	0	.	0	0	0	0	0
LAMA2	3908	bcgsc.ca	37	6	129722453	129722453	+	Missense_Mutation	SNP	C	C	A	rs56173620	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	LAMA2-162	NM_000426	exon38	c.C5530A	p.R1844S	GCCAACCGTCTTG	.	88	4	67	0	C|0.989;A|0.011	0	0	0	0	0
POU5F1B	5462	bcgsc.ca	37	8	128428621	128428621	+	Silent	SNP	C	C	A	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_001159542	exon1	c.C510A	p.I170I	GCTCATCCTGGGG	.	30	4	45	0	.	0	0	0	0	0
GNAQ	2776	broad.mit.edu	37	9	80646047	80646047	+	Silent	SNP	G	G	A	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	GNAQ-3808	NM_002072	exon1	c.C105T	p.D35D	GCGGGCGTCCCGC	.	100	10	18	0	.	4	4	0	0	0
COL15A1	1306	ucsc.edu	37	9	101748114	101748114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	COL15A1-96	NM_001855	exon3	c.G368A	p.R123Q	GCCTGCGGCTCTC	.	140	2	113	0	.	64	34	30	0	0
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114195628	114195628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KIAA0368-68	NM_001080398	exon9	c.A1267G	p.I423V	CTTCTATGAATTT	.	152	8	120	0	.	14	14	0	0	0
TNMD	64102	broad.mit.edu	37	X	99854070	99854070	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TNMD-130	NM_022144	exon6	c.635delA	p.E212fs	CCAACGAAAAAAA	.	458	7	226	0	.	0	0	0	0	0
CAPN6	827	bcgsc.ca	37	X	110494841	110494841	+	Missense_Mutation	SNP	C	C	G	rs12013711	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	CAPN6-195	NM_014289	exon6	c.G829C	p.V277L	TATACACCTTCTC	.	288	8	154	0	C|0.723;0|0.021	0	0	0	0	0
PGRMC1	10857	broad.mit.edu	37	X	118370384	118370384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PGRMC1-130	NM_006667	exon1	c.G58T	p.G20W	AGCGGCGGGCTGC	.	139	5	29	0	.	43	43	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346616	39346617	+	In_Frame_Ins	INS	-	-	AGCCTAGCTGTGGGTCCAGCTGCTGCC	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_001190460	exon1	c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC	p.Q160delinsQPSCGSSCCQ	TGCTGCCAGCCTT	.	227	0	106	0	.	0	0	0	0	0
