Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANK1	0	genome.wustl.edu	37	8	41551422	41551422	+	Missense_Mutation	SNP	C	C	T			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	8	41551422	41551422	C	T	SNP	ANK1	ENST00000396942	human	ensembl	69_37n	-1	known	missense	c.3526	p.V1176I	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ankyrin_rpt,smart_ZU5,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	14	0	0.00	20	6	23.08	-	-	-
BCKDHA	0	genome.wustl.edu	37	19	41903744	41903744	+	Silent	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	41903744	41903744	G	A	SNP	BCKDHA	ENST00000269980	human	ensembl	69_37n	+1	known	silent	c.12	p.A4	0.101	NULL	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098	16	0	0.00	13	47	77.05	-	-	-
BMX	0	genome.wustl.edu	37	X	15554529	15554529	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	X	15554529	15554529	G	A	SNP	BMX	ENST00000342014	human	ensembl	69_37n	+1	known	missense	c.1201	p.D401N	0.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom	-	no_errors	BMX	HGNC	ENSG00000102010	51	0	0.00	19	12	38.71	-	-	-
CCDC106	0	genome.wustl.edu	37	19	56160842	56160842	+	Silent	SNP	C	C	T			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	56160842	56160842	C	T	SNP	CCDC106	ENST00000308964	human	ensembl	69_37n	+1	known	silent	c.205	p.L69	1.000	NULL	NULL	-	no_errors	CCDC106	HGNC	ENSG00000173581	76	0	0.00	18	104	84.55	-	-	-
CGNL1	0	genome.wustl.edu	37	15	57754042	57754042	+	Silent	SNP	T	T	C			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	15	57754042	57754042	T	C	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	+1	known	silent	c.2355	p.Y785	0.362	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	140	0	0.00	45	7	13.21	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16945452	16945452	+	RNA	SNP	C	C	T			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	16945452	16945452	C	T	SNP	CROCCP2	ENST00000412962	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	53	0	0.00	58	10	14.71	-	-	-
DCAF8L1	0	genome.wustl.edu	37	X	27998516	27998516	+	Missense_Mutation	SNP	G	G	C			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	X	27998516	27998516	G	C	SNP	DCAF8L1	ENST00000441525	human	ensembl	69_37n	-1	known	missense	c.936	p.F312L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372	126	0	0.00	47	32	40.51	-	-	-
ENAM	0	genome.wustl.edu	37	4	71508638	71508638	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	4	71508638	71508638	G	-	DEL	ENAM	ENST00000396073	human	ensembl	69_37n	+1	known	frame_shift_del	c.1495	p.G499fs	1.000	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	43	0	0.00	11	2	15.38	-	-	-
ESF1	0	genome.wustl.edu	37	20	13750669	13750669	+	Splice_Site	DEL	T	T	-			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	20	13750669	13750669	T	-	DEL	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	splice_site_del	c.1404-2	e6-2	0.998	-	-	-	no_errors	ESF1	HGNC	ENSG00000089048	72	0	0.00	14	2	12.50	-	-	-
FAM71A	0	genome.wustl.edu	37	1	212799630	212799630	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	212799630	212799630	G	A	SNP	FAM71A	ENST00000294829	human	ensembl	69_37n	+1	known	missense	c.1411	p.D471N	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	44	0	0.00	39	23	37.10	-	-	-
GANC	0	genome.wustl.edu	37	15	42619578	42619578	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	15	42619578	42619578	G	A	SNP	GANC	ENST00000318010	human	ensembl	69_37n	+1	known	missense	c.1438	p.D480N	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANC	HGNC	ENSG00000214013	193	0	0.00	69	48	41.03	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115955	8115956	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	10	8115955	8115956	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1304_1305	p.S437fs	1.000:0.921	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	34	0	0.00	26	21	44.68	-	-	-
HYOU1	0	genome.wustl.edu	37	11	118917361	118917361	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	11	118917361	118917361	G	A	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.2749	p.R917W	0.796	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	78	0	0.00	20	35	62.50	-	-	-
KIF1A	0	genome.wustl.edu	37	2	241684897	241684897	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	2	241684897	241684897	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	69_37n	-1	known	missense	c.3412	p.P1138S	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,prints_Kinesin_motor_dom,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294	22	0	0.00	59	32	35.16	-	-	-
MAP4K1	0	genome.wustl.edu	37	19	39092118	39092118	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	39092118	39092118	G	A	SNP	MAP4K1	ENST00000591921	human	ensembl	69_37n	-1	novel	missense	c.605	p.S202F	1.000	NULL	pfam_Citron,smart_Citron	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MAP4K1	HGNC	ENSG00000104814	31	0	0.00	118	21	15.11	-	-	-
MCCC1	0	genome.wustl.edu	37	3	182812366	182812367	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	3	182812366	182812367	-	A	INS	MCCC1	ENST00000265594	human	ensembl	69_37n	-1	known	frame_shift_ins	c.117_116	p.M39fs	0.969:0.660	superfamily_PreATP-grasp_fold	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070	126	0	0.00	61	30	32.97	-	-	-
MTOR	0	genome.wustl.edu	37	1	11300583	11300583	+	Silent	SNP	G	G	C			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	11300583	11300583	G	C	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.1563	p.L521	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	46	0	0.00	46	41	47.13	-	-	-
NTRK2	0	genome.wustl.edu	37	9	87635261	87635261	+	Silent	SNP	C	C	T			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	9	87635261	87635261	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	69_37n	+1	known	silent	c.2313	p.Y771	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053	36	0	0.00	17	9	34.62	-	-	-
PLCE1	0	genome.wustl.edu	37	10	96076406	96076406	+	Missense_Mutation	SNP	C	C	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	10	96076406	96076406	C	A	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	+1	known	missense	c.6235	p.P2079T	0.995	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	35	0	0.00	27	6	18.18	-	-	-
PTPRH	0	genome.wustl.edu	37	19	55707989	55707989	+	Missense_Mutation	SNP	C	C	G			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	55707989	55707989	C	G	SNP	PTPRH	ENST00000376350	human	ensembl	69_37n	-1	known	missense	c.2158	p.G720R	0.001	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031	12	0	0.00	20	34	62.96	-	-	-
RASGRP4	0	genome.wustl.edu	37	19	38910824	38910824	+	Silent	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	19	38910824	38910824	G	A	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	silent	c.456	p.T152	0.045	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	52	0	0.00	98	16	13.91	-	-	-
RFNG	0	genome.wustl.edu	37	17	80008605	80008605	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	17	80008605	80008605	G	A	SNP	RFNG	ENST00000310496	human	ensembl	69_37n	-1	known	missense	c.352	p.R118C	1.000	pfam_Fringe-like,pirsf_Fringe	pfam_Fringe-like,pirsf_Fringe	-	no_errors	RFNG	HGNC	ENSG00000169733	11	0	0.00	36	23	38.33	-	-	-
RP1L1	0	genome.wustl.edu	37	8	10466300	10466300	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	8	10466300	10466300	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	nonsense	c.5308	p.Q1770*	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	90	0	0.00	61	43	41.35	-	-	-
THUMPD2	0	genome.wustl.edu	37	2	39997226	39997226	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	2	39997226	39997226	T	-	DEL	THUMPD2	ENST00000505747	human	ensembl	69_37n	-1	known	frame_shift_del	c.296	p.N99fs	0.984	NULL	pfam_RNA_methylase_dom,pfam_Methyltransf_11,pfam_THUMP,pfam_Small_mtfrase_dom,pfam_UbiE/COQ5_MeTrFase,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD2	HGNC	ENSG00000138050	58	0	0.00	15	2	11.76	-	-	-
TTC7B	0	genome.wustl.edu	37	14	91156023	91156023	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	14	91156023	91156023	G	A	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.811	p.R271W	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	104	0	0.00	56	16	22.22	-	-	-
WNT4	0	genome.wustl.edu	37	1	22446727	22446727	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	1	22446727	22446727	G	A	SNP	WNT4	ENST00000290167	human	ensembl	69_37n	-1	known	missense	c.872	p.T291M	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt4	-	no_errors	WNT4	HGNC	ENSG00000162552	21	0	0.00	24	14	36.84	-	-	-
XRCC2	0	genome.wustl.edu	37	7	152345989	152345989	+	Missense_Mutation	SNP	G	G	A			TCGA-A1-A0SQ-01A-21D-A142-09	TCGA-A1-A0SQ-10B-01W-A187-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9055ddce-a0ff-4980-af86-c07f949acbc3	88e47f34-a818-4ad9-ab74-66a1fe307ad4	7	152345989	152345989	G	A	SNP	XRCC2	ENST00000359321	human	ensembl	69_37n	-1	known	missense	c.581	p.T194M	0.999	pfam_DNA_recomb/repair_Rad51_C,pfscan_DNA_recomb_RecA/RadB_ATP-bd	pfam_DNA_recomb/repair_Rad51_C,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC2	HGNC	ENSG00000196584	36	0	0.00	28	15	34.88	-	-	-
