Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ARHGEF1	0	genome.wustl.edu	37	19	42396193	42396193	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	19	42396193	42396193	C	T	SNP	ARHGEF1	ENST00000337665	human	ensembl	69_37n	+1	known	missense	c.368	p.A123V	1.000	pfam_Regulat_G_prot_signal-like,superfamily_Regulat_G_prot_signal_superfam	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	72	0	0.00	70	11	13.41	-	-	-
ARHGEF10L	0	genome.wustl.edu	37	1	17964411	17964411	+	Silent	SNP	C	C	A			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	1	17964411	17964411	C	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	+1	known	silent	c.1956	p.L652	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	31	0	0.00	21	4	16.00	-	-	-
ARID2	0	genome.wustl.edu	37	12	46230605	46230605	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	12	46230605	46230605	G	A	SNP	ARID2	ENST00000334344	human	ensembl	69_37n	+1	known	missense	c.854	p.R285Q	1.000	superfamily_ARM-type_fold	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	136	1	0.73	269	39	12.66	-	-	-
CHADL	0	genome.wustl.edu	37	22	41636845	41636846	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	22	41636845	41636846	-	C	INS	CHADL	ENST00000455425	human	ensembl	69_37n	-1	putative	frame_shift_ins	c.54_53	p.F19fs	0.005:0.003	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	CHADL	HGNC	ENSG00000100399	28	0	0.00	26	3	10.34	-	-	-
CHAF1A	0	genome.wustl.edu	37	19	4432011	4432011	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	19	4432011	4432011	G	T	SNP	CHAF1A	ENST00000301280	human	ensembl	69_37n	+1	known	missense	c.2010	p.E670D	0.991	NULL	pfam_CAF1A,pfam_CAF-1_p150	-	no_errors	CHAF1A	HGNC	ENSG00000167670	105	0	0.00	64	8	11.11	-	-	-
CLSTN2	0	genome.wustl.edu	37	3	140251267	140251267	+	Silent	SNP	C	C	T			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	3	140251267	140251267	C	T	SNP	CLSTN2	ENST00000458420	human	ensembl	69_37n	+1	known	silent	c.1446	p.N482	0.984	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	112	0	0.00	124	24	16.22	-	-	-
GPI	0	genome.wustl.edu	37	19	34856187	34856188	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	19	34856187	34856188	-	G	INS	GPI	ENST00000415930	human	ensembl	69_37n	+1	known	frame_shift_ins	c.133_134	p.D46fs	0.460:0.410	NULL	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220	33	0	0.00	9	2	18.18	-	-	-
HECW1	0	genome.wustl.edu	37	7	43590145	43590145	+	Silent	SNP	C	C	T			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	7	43590145	43590145	C	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	+1	known	silent	c.4350	p.R1450	0.091	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	155	0	0.00	138	19	12.03	-	-	-
KCNQ5	0	genome.wustl.edu	37	6	73843189	73843189	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	6	73843189	73843189	G	A	SNP	KCNQ5	ENST00000427928	human	ensembl	69_37n	+1	putative	missense	c.67	p.G23R	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KCNQ5	HGNC	ENSG00000185760	254	0	0.00	124	14	10.14	-	-	-
NF1	0	genome.wustl.edu	37	17	29548939	29548939	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	17	29548939	29548939	G	A	SNP	NF1	ENST00000358273	human	ensembl	69_37n	+1	known	nonsense	c.1713	p.W571*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	46	0	0.00	259	37	12.50	-	-	-
PCLO	0	genome.wustl.edu	37	7	82791690	82791691	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	7	82791690	82791691	-	G	INS	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	frame_shift_ins	c.219_218	p.A74fs	0.999:0.998	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	27	0	0.00	23	3	11.54	-	-	-
SH3PXD2A	0	genome.wustl.edu	37	10	105484097	105484098	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	10	105484097	105484098	-	G	INS	SH3PXD2A	ENST00000369774	human	ensembl	69_37n	-1	known	frame_shift_ins	c.329_328	p.H110fs	1.000:0.989	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957	44	0	0.00	40	5	11.11	-	-	-
SVEP1	0	genome.wustl.edu	37	9	113191597	113191597	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	9	113191597	113191597	G	T	SNP	SVEP1	ENST00000401783	human	ensembl	69_37n	-1	known	missense	c.5633	p.T1878N	0.002	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Growth_fac_rcpt,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	44	0	0.00	83	14	14.43	-	-	-
TEKT1	0	genome.wustl.edu	37	17	6733605	6733605	+	Silent	SNP	T	T	G			TCGA-A2-A04Q-01A-21W-A050-09	TCGA-A2-A04Q-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	02eb17d4-9e9e-4e32-96b0-90ccdda3f167	41482042-a515-4e00-985b-f18952dfcbf3	17	6733605	6733605	T	G	SNP	TEKT1	ENST00000338694	human	ensembl	69_37n	-1	known	silent	c.91	p.R31	0.728	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT1	HGNC	ENSG00000167858	59	0	0.00	96	16	14.29	-	-	-
