Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD11	0	genome.wustl.edu	37	16	89349106	89349106	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	16	89349106	89349106	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	69_37n	-1	known	missense	c.3844	p.E1282K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	86	0	0.00	46	15	24.59	-	-	-
ARHGEF2	0	genome.wustl.edu	37	1	155921009	155921009	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	155921009	155921009	C	T	SNP	ARHGEF2	ENST00000368315	human	ensembl	69_37n	-1	known	missense	c.2317	p.E773K	0.879	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584	11	0	0.00	17	5	22.73	-	-	-
ATP9A	0	genome.wustl.edu	37	20	50273503	50273503	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	20	50273503	50273503	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	69_37n	-1	known	missense	c.1480	p.V494I	0.992	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP9A	HGNC	ENSG00000054793	101	0	0.00	92	31	25.20	-	-	-
BMP15	0	genome.wustl.edu	37	X	50659301	50659301	+	Silent	SNP	T	T	C			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	50659301	50659301	T	C	SNP	BMP15	ENST00000252677	human	ensembl	69_37n	+1	known	silent	c.873	p.C291	0.931	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP15	HGNC	ENSG00000130385	127	1	0.78	80	30	27.27	-	-	-
CACNB1	0	genome.wustl.edu	37	17	37347809	37347809	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	37347809	37347809	G	T	SNP	CACNB1	ENST00000394303	human	ensembl	69_37n	-1	known	missense	c.209	p.S70Y	1.000	pfam_VDCC_L_bsu	pfam_Guanylate_kin,pfam_VDCC_L_bsu,superfamily_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191	124	0	0.00	61	9	12.86	-	-	-
CHST9	0	genome.wustl.edu	37	18	24497058	24497058	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	18	24497058	24497058	T	G	SNP	CHST9	ENST00000284224	human	ensembl	69_37n	-1	known	missense	c.497	p.N166T	0.030	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080	226	0	0.00	78	73	48.03	-	-	-
CTNNA2	0	genome.wustl.edu	37	2	80136851	80136851	+	Silent	SNP	C	C	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	80136851	80136851	C	T	SNP	CTNNA2	ENST00000361291	human	ensembl	69_37n	+1	known	silent	c.1086	p.R362	0.309	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	35	0	0.00	22	5	18.52	-	-	-
DROSHA	0	genome.wustl.edu	37	5	31526807	31526807	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	5	31526807	31526807	A	C	SNP	DROSHA	ENST00000344624	human	ensembl	69_37n	-1	known	missense	c.233	p.F78C	1.000	NULL	pfam_RNase_III_dom,pfam_Ds-RNA-bd,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360	61	0	0.00	42	15	26.32	-	-	-
FARP2	0	genome.wustl.edu	37	2	242312707	242312707	+	Splice_Site	SNP	T	T	A			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	242312707	242312707	T	A	SNP	FARP2	ENST00000264042	human	ensembl	69_37n	+1	known	splice_site	c.183+2	e1+2	1.000	-	-	-	no_errors	FARP2	HGNC	ENSG00000006607	93	0	0.00	76	32	29.09	-	-	-
HIST1H3B	0	genome.wustl.edu	37	6	26031937	26031937	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	6	26031937	26031937	C	T	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.352	p.V118M	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	68	0	0.00	63	15	19.23	-	-	-
KCNJ6	0	genome.wustl.edu	37	21	39087178	39087178	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	21	39087178	39087178	C	A	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	missense	c.282	p.L94F	0.977	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	160	0	0.00	148	19	11.38	-	-	-
KIAA2026	0	genome.wustl.edu	37	9	5921255	5921255	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	9	5921255	5921255	G	T	SNP	KIAA2026	ENST00000399933	human	ensembl	69_37n	-1	novel	missense	c.4741	p.Q1581K	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	317	1	0.31	194	89	31.45	-	-	-
KIR2DL1	0	genome.wustl.edu	37	19	55284926	55284926	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	19	55284926	55284926	G	A	SNP	KIR2DL1	ENST00000336077	human	ensembl	69_37n	+1	known	missense	c.212	p.R71H	0.000	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL1	HGNC	ENSG00000125498	479	0	0.00	258	98	27.53	-	-	-
LGR4	0	genome.wustl.edu	37	11	27393924	27393924	+	Silent	SNP	A	A	C			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	11	27393924	27393924	A	C	SNP	LGR4	ENST00000379214	human	ensembl	69_37n	-1	known	silent	c.1401	p.A467	1.000	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	191	1	0.52	75	17	18.48	-	-	-
MTR	0	genome.wustl.edu	37	1	237015858	237015858	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	237015858	237015858	C	T	SNP	MTR	ENST00000366577	human	ensembl	69_37n	+1	known	missense	c.1733	p.S578F	1.000	pfam_Pterin-binding,superfamily_Dihydropteroate_synth-like,pirsf_MetH,pfscan_Pterin-binding,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	69	0	0.00	98	16	14.04	-	-	-
MTR	0	genome.wustl.edu	37	1	237023136	237023136	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	237023136	237023136	C	A	SNP	MTR	ENST00000366577	human	ensembl	69_37n	+1	known	missense	c.1957	p.Q653K	0.644	pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	127	0	0.00	113	18	13.74	-	-	-
MYH13	0	genome.wustl.edu	37	17	10248682	10248682	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	10248682	10248682	C	T	SNP	MYH13	ENST00000252172	human	ensembl	69_37n	-1	known	missense	c.1421	p.S474N	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH13	HGNC	ENSG00000006788	270	0	0.00	128	138	51.49	-	-	-
NOTCH3	0	genome.wustl.edu	37	19	15281551	15281551	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	19	15281551	15281551	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	missense	c.4822	p.A1608T	0.999	pfam_Notch_NODP_dom,pirsf_Notch	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	17	0	0.00	10	10	47.62	-	-	-
PHRF1	0	genome.wustl.edu	37	11	608503	608514	+	In_Frame_Del	DEL	GGACGCGCTCTG	GGACGCGCTCTG	-			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	GGACGCGCTCTG	GGACGCGCTCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	11	608503	608514	GGACGCGCTCTG	-	DEL	PHRF1	ENST00000264555	human	ensembl	69_37n	+1	known	in_frame_del	c.3047_3058	p.GTRS1020in_frame_del	0.000:0.000:0.000:0.003:0.000:0.010:0.008:0.000:0.404:0.408:0.000:0.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	12	0	0.00	12	6	33.33	-	-	-
PPEF1	0	genome.wustl.edu	37	X	18800500	18800500	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	18800500	18800500	G	T	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	+1	known	nonsense	c.742	p.E248*	1.000	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	278	0	0.00	123	41	23.98	-	-	-
RHOQ	0	genome.wustl.edu	37	2	46803351	46803351	+	Silent	SNP	A	A	G			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	46803351	46803351	A	G	SNP	RHOQ	ENST00000238738	human	ensembl	69_37n	+1	known	silent	c.327	p.E109	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOQ	HGNC	ENSG00000119729	152	1	0.65	89	42	32.06	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037842	10037842	+	RNA	SNP	A	A	G			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	Y	10037842	10037842	A	G	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	18	0	0.00	14	4	22.22	-	-	-
SMYD2	0	genome.wustl.edu	37	1	214491454	214491454	+	Silent	SNP	A	A	G			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	1	214491454	214491454	A	G	SNP	SMYD2	ENST00000366957	human	ensembl	69_37n	+1	known	silent	c.381	p.K127	0.043	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD2	HGNC	ENSG00000143499	180	0	0.00	69	78	53.06	-	-	-
SOS1	0	genome.wustl.edu	37	2	39281877	39281877	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	2	39281877	39281877	T	C	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	missense	c.598	p.T200A	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	188	0	0.00	116	37	24.03	-	-	-
STAG2	0	genome.wustl.edu	37	X	123195704	123195704	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	X	123195704	123195704	G	T	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	+1	known	nonsense	c.1618	p.G540*	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	154	0	0.00	81	34	29.57	-	-	-
TCOF1	0	genome.wustl.edu	37	5	149776147	149776149	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	5	149776147	149776149	AAG	-	DEL	TCOF1	ENST00000451292	human	ensembl	69_37n	+1	known	in_frame_del	c.4195_4197	p.K1402in_frame_del	1.000:1.000:1.000	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	35	0	0.00	42	5	10.64	-	-	-
TP53	0	genome.wustl.edu	37	17	7578253	7578253	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0SX-01A-12D-A099-09	TCGA-A2-A0SX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b54bc31e-bdcc-4ad5-998e-5a9c542f83bb	ee7f21d0-efa1-4d19-9b82-03e1a90432b4	17	7578253	7578253	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.596	p.G199V	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	212	0	0.00	74	69	47.59	-	-	-
