Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANGPT1	0	genome.wustl.edu	37	8	108297075	108297075	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	8	108297075	108297075	C	A	SNP	ANGPT1	ENST00000517746	human	ensembl	69_37n	-1	known	missense	c.1040	p.G347V	1.000	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT1	HGNC	ENSG00000154188	102	0	0.00	80	34	29.57	-	-	-
ANKRD32	0	genome.wustl.edu	37	5	94027917	94027917	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	5	94027917	94027917	C	T	SNP	ANKRD32	ENST00000265140	human	ensembl	69_37n	+1	known	missense	c.2651	p.S884L	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302	79	0	0.00	71	38	34.86	-	-	-
C4orf29	0	genome.wustl.edu	37	4	128951784	128951784	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	4	128951784	128951784	G	C	SNP	C4orf29	ENST00000398965	human	ensembl	69_37n	+1	known	missense	c.1198	p.G400R	1.000	pfam_DUF2048	pfam_DUF2048	-	no_errors	C4orf29	HGNC	ENSG00000164074	99	0	0.00	90	12	11.76	-	-	-
CKAP2L	0	genome.wustl.edu	37	2	113514535	113514535	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	2	113514535	113514535	G	T	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.413	p.P138H	0.017	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	174	0	0.00	128	76	37.25	-	-	-
DIAPH1	0	genome.wustl.edu	37	5	140903779	140903787	+	In_Frame_Del	DEL	CACCTGTCT	CACCTGTCT	-			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	CACCTGTCT	CACCTGTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	5	140903779	140903787	CACCTGTCT	-	DEL	DIAPH1	ENST00000253811	human	ensembl	69_37n	-1	known	in_frame_del	c.3595_3587	p.ETG1196in_frame_del	1.000:0.994:1.000:1.000:0.164:1.000:1.000:1.000:1.000	smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_FH2_actin-bd,superfamily_tRNA-bd_arm,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH1	HGNC	ENSG00000131504	64	0	0.00	60	18	23.08	-	-	-
FAAH	0	genome.wustl.edu	37	1	46872015	46872015	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	1	46872015	46872015	T	C	SNP	FAAH	ENST00000243167	human	ensembl	69_37n	+1	known	missense	c.926	p.V309A	1.000	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480	36	0	0.00	47	7	12.96	-	-	-
FGF13	0	genome.wustl.edu	37	X	137793117	137793117	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	X	137793117	137793117	G	T	SNP	FGF13	ENST00000315930	human	ensembl	69_37n	-1	known	missense	c.49	p.R17S	1.000	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF,prints_GF_heparin-bd	-	no_errors	FGF13	HGNC	ENSG00000129682	94	0	0.00	109	60	35.50	-	-	-
GREM1	0	genome.wustl.edu	37	15	33023223	33023223	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	15	33023223	33023223	G	C	SNP	GREM1	ENST00000300177	human	ensembl	69_37n	+1	known	missense	c.332	p.R111P	1.000	pfam_DAN,smart_Cys_knot_C,pirsf_Gremlin_precursor	pfam_DAN,smart_Cys_knot_C,pirsf_Gremlin_precursor	-	no_errors	GREM1	HGNC	ENSG00000166923	23	0	0.00	43	11	20.37	-	-	-
MATN2	0	genome.wustl.edu	37	8	98900392	98900392	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	8	98900392	98900392	G	A	SNP	MATN2	ENST00000254898	human	ensembl	69_37n	+1	known	missense	c.64	p.E22K	0.387	NULL	pfam_VWF_A,pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	29	0	0.00	28	12	30.00	-	-	-
MYO18B	0	genome.wustl.edu	37	22	26291174	26291174	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	22	26291174	26291174	T	A	SNP	MYO18B	ENST00000335473	human	ensembl	69_37n	+1	known	missense	c.4595	p.L1532H	0.993	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	37	0	0.00	30	27	47.37	-	-	-
MYOM3	0	genome.wustl.edu	37	1	24409111	24409111	+	Silent	SNP	G	G	A			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	1	24409111	24409111	G	A	SNP	MYOM3	ENST00000330966	human	ensembl	69_37n	-1	known	silent	c.2067	p.T689	0.020	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	MYOM3	HGNC	ENSG00000142661	25	0	0.00	39	13	25.00	-	-	-
NCOR1	0	genome.wustl.edu	37	17	15984026	15984027	+	Frame_Shift_Ins	INS	-	-	AGGC			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	17	15984026	15984027	-	AGGC	INS	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3193_3192	p.Y1064fs	0.999:0.529	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	152	0	0.00	68	48	41.38	-	-	-
NKAP	0	genome.wustl.edu	37	X	119077497	119077497	+	Silent	SNP	C	C	T			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	X	119077497	119077497	C	T	SNP	NKAP	ENST00000371410	human	ensembl	69_37n	-1	known	silent	c.72	p.S24	0.001	NULL	pfam_DUF926	-	no_errors	NKAP	HGNC	ENSG00000101882	24	0	0.00	23	13	36.11	-	-	-
OR4F6	0	genome.wustl.edu	37	15	102346617	102346617	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	15	102346617	102346617	G	T	SNP	OR4F6	ENST00000328882	human	ensembl	69_37n	+1	known	missense	c.695	p.G232V	0.002	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140	255	0	0.00	181	97	34.89	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	134	0	0.00	87	40	31.25	-	-	-
PPARG	0	genome.wustl.edu	37	3	12447485	12447485	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	3	12447485	12447485	C	G	SNP	PPARG	ENST00000287820	human	ensembl	69_37n	+1	known	missense	c.724	p.L242V	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170	70	0	0.00	63	28	30.77	-	-	-
TNRC6B	0	genome.wustl.edu	37	22	40661511	40661511	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	22	40661511	40661511	G	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	+1	known	missense	c.1277	p.G426V	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	77	0	0.00	73	28	27.72	-	-	-
ZNF90	0	genome.wustl.edu	37	19	20228851	20228855	+	Frame_Shift_Del	DEL	ATAAG	ATAAG	-			TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	ATAAG	ATAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	19	20228851	20228855	ATAAG	-	DEL	ZNF90	ENST00000418063	human	ensembl	69_37n	+1	known	frame_shift_del	c.488_492	p.I165fs	0.010:0.012:0.000:0.000:0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	112	0	0.00	91	27	22.69	-	-	-
