Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACVR2B	0	genome.wustl.edu	37	3	38519699	38519699	+	Silent	SNP	C	C	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	38519699	38519699	C	T	SNP	ACVR2B	ENST00000352511	human	ensembl	69_37n	+1	known	silent	c.438	p.I146	0.363	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2B	HGNC	ENSG00000114739	25	0	0.00	33	14	29.17	-	-	-
ATXN1	0	genome.wustl.edu	37	6	16306707	16306707	+	Silent	SNP	C	C	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	6	16306707	16306707	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	silent	c.2301	p.A767	0.012	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	78	0	0.00	96	12	11.11	-	-	-
ATXN3	0	genome.wustl.edu	37	14	92562444	92562444	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	14	92562444	92562444	G	A	SNP	ATXN3	ENST00000545170	human	ensembl	69_37n	-1	known	missense	c.227	p.S76F	1.000	pfam_Josephin,pfscan_Josephin,prints_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3	HGNC	ENSG00000066427	60	0	0.00	17	4	19.05	-	-	-
CTNNA1	0	genome.wustl.edu	37	5	138264934	138264934	+	Splice_Site	SNP	G	G	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	5	138264934	138264934	G	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	+1	known	splice_site	c.1900-1	e13-1	1.000	-	-	-	no_errors	CTNNA1	HGNC	ENSG00000044115	39	0	0.00	46	15	24.59	-	-	-
ERG	0	genome.wustl.edu	37	21	39755519	39755519	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	39755519	39755519	G	T	SNP	ERG	ENST00000398919	human	ensembl	69_37n	-1	known	missense	c.1267	p.P423T	1.000	NULL	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERG	HGNC	ENSG00000157554	53	0	0.00	35	6	14.63	-	-	-
GYPA	0	genome.wustl.edu	37	4	145035868	145035868	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	4	145035868	145035868	A	-	DEL	GYPA	ENST00000360771	human	ensembl	69_37n	-1	known	frame_shift_del	c.410	p.L137fs	0.001	pfam_Glycophorin,pirsf_Glycophorin	pfam_Glycophorin,pirsf_Glycophorin	-	no_errors	GYPA	HGNC	ENSG00000170180	74	0	0.00	8	2	20.00	-	-	-
ITPR3	0	genome.wustl.edu	37	6	33631568	33631568	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	6	33631568	33631568	C	G	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	+1	known	missense	c.1059	p.C353W	1.000	pfam_MIR,superfamily_MIR,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	30	0	0.00	77	21	21.21	-	-	-
KRTAP10-7	0	genome.wustl.edu	37	21	46020889	46020889	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	46020889	46020889	T	A	SNP	KRTAP10-7	ENST00000380102	human	ensembl	69_37n	+1	known	missense	c.368	p.V123D	0.009	NULL	NULL	-	no_errors	KRTAP10-7	HGNC	ENSG00000205441	43	0	0.00	33	16	32.65	-	-	-
KRTAP19-2	0	genome.wustl.edu	37	21	31859634	31859634	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	31859634	31859634	A	T	SNP	KRTAP19-2	ENST00000334055	human	ensembl	69_37n	-1	known	missense	c.34	p.F12I	0.013	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP19-2	HGNC	ENSG00000186965	63	0	0.00	29	19	38.78	-	-	-
NRK	0	genome.wustl.edu	37	X	105132399	105132399	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	X	105132399	105132399	G	A	SNP	NRK	ENST00000428173	human	ensembl	69_37n	+1	known	missense	c.365	p.R122Q	0.954	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	NRK	HGNC	ENSG00000123572	134	1	0.74	40	7	14.89	-	-	-
PIK3C2B	0	genome.wustl.edu	37	1	204438798	204438798	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	1	204438798	204438798	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.133	p.E45K	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	50	0	0.00	10	19	65.52	-	-	-
PLCH1	0	genome.wustl.edu	37	3	155232586	155232586	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	155232586	155232586	C	A	SNP	PLCH1	ENST00000340059	human	ensembl	69_37n	-1	known	nonsense	c.1522	p.E508*	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	76	0	0.00	17	5	22.73	-	-	-
PLD5	0	genome.wustl.edu	37	1	242451687	242451687	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	1	242451687	242451687	G	T	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.472	p.H158N	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	84	0	0.00	18	24	57.14	-	-	-
RGMA	0	genome.wustl.edu	37	15	93588269	93588269	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	15	93588269	93588269	C	T	SNP	RGMA	ENST00000329082	human	ensembl	69_37n	-1	known	missense	c.1312	p.A438T	0.000	NULL	pfam_RGM_N,pfam_RGM_C	-	no_errors	RGMA	HGNC	ENSG00000182175	8	0	0.00	12	6	31.58	-	-	-
SMARCA1	0	genome.wustl.edu	37	X	128631871	128631871	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	X	128631871	128631871	A	T	SNP	SMARCA1	ENST00000371122	human	ensembl	69_37n	-1	known	missense	c.1455	p.S485R	1.000	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ATPase_nucl-remodel_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Homeodomain-like,superfamily_ATPase_nucl-remodel_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	82	0	0.00	19	10	34.48	-	-	-
STXBP2	0	genome.wustl.edu	37	19	7712614	7712614	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	19	7712614	7712614	C	G	SNP	STXBP2	ENST00000441779	human	ensembl	69_37n	+1	known	missense	c.1733	p.S578C	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944	58	0	0.00	39	16	28.57	-	-	-
TRRAP	0	genome.wustl.edu	37	7	98527687	98527687	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	7	98527687	98527687	C	T	SNP	TRRAP	ENST00000456197	human	ensembl	69_37n	+1	novel	nonsense	c.2395	p.R799*	0.999	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRRAP	HGNC	ENSG00000196367	62	0	0.00	20	12	37.50	-	-	-
UNC13D	0	genome.wustl.edu	37	17	73836636	73836636	+	Silent	SNP	C	C	T			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	17	73836636	73836636	C	T	SNP	UNC13D	ENST00000412096	human	ensembl	69_37n	-1	known	silent	c.705	p.K235	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,pfam_Munc13_subgr_dom-2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	UNC13D	HGNC	ENSG00000092929	64	0	0.00	23	12	34.29	-	-	-
ZBTB38	0	genome.wustl.edu	37	3	141164333	141164333	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	141164333	141164333	G	A	SNP	ZBTB38	ENST00000321464	human	ensembl	69_37n	+1	known	missense	c.3106	p.E1036K	0.998	pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	27	0	0.00	27	17	38.64	-	-	-
ZNF629	0	genome.wustl.edu	37	16	30793176	30793176	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	16	30793176	30793176	T	C	SNP	ZNF629	ENST00000262525	human	ensembl	69_37n	-1	known	missense	c.2473	p.S825G	0.855	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870	36	0	0.00	44	10	18.52	-	-	-
