Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AHNAK	0	genome.wustl.edu	37	11	62294600	62294600	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	11	62294600	62294600	T	G	SNP	AHNAK	ENST00000378024	human	ensembl	69_37n	-1	known	missense	c.7289	p.E2430A	0.998	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	106	0	0.00	89	31	25.83	-	-	-
AIM1	0	genome.wustl.edu	37	6	106967352	106967352	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	6	106967352	106967352	G	A	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	+1	known	missense	c.1045	p.E349K	0.003	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	31	0	0.00	15	3	16.67	-	-	-
ANKRD28	0	genome.wustl.edu	37	3	15736712	15736712	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	3	15736712	15736712	C	T	SNP	ANKRD28	ENST00000383777	human	ensembl	69_37n	-1	known	missense	c.1678	p.E560K	1.000	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560	37	0	0.00	36	5	12.20	-	-	-
BCL9L	0	genome.wustl.edu	37	11	118779095	118779095	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	11	118779095	118779095	G	A	SNP	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	missense	c.296	p.A99V	0.985	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	63	0	0.00	37	8	17.78	-	-	-
C2orf82	0	genome.wustl.edu	37	2	233740258	233740258	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	2	233740258	233740258	G	A	SNP	C2orf82	ENST00000449331	human	ensembl	69_37n	+1	putative	missense	c.121	p.A41T	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C2orf82	HGNC	ENSG00000182600	35	0	0.00	25	12	32.43	-	-	-
CD163L1	0	genome.wustl.edu	37	12	7559399	7559399	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	12	7559399	7559399	C	T	SNP	CD163L1	ENST00000313599	human	ensembl	69_37n	-1	known	missense	c.816	p.M272I	0.014	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt,prints_Srcr_rcpt	-	no_errors	CD163L1	HGNC	ENSG00000177675	29	0	0.00	25	6	19.35	-	-	-
CDH1	0	genome.wustl.edu	37	16	68867258	68867258	+	Nonsense_Mutation	SNP	T	T	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	16	68867258	68867258	T	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.2505	p.Y835*	0.988	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	83	0	0.00	28	27	49.09	-	-	-
CHD4	0	genome.wustl.edu	37	12	6710219	6710219	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	12	6710219	6710219	C	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.800	p.G267V	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	61	0	0.00	39	21	35.00	-	-	-
CLK2	0	genome.wustl.edu	37	1	155233769	155233769	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	155233769	155233769	T	C	SNP	CLK2	ENST00000368361	human	ensembl	69_37n	-1	known	missense	c.1289	p.Y430C	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CLK2	HGNC	ENSG00000176444	54	0	0.00	31	35	53.03	-	-	-
CPAMD8	0	genome.wustl.edu	37	19	17062885	17062885	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	17062885	17062885	G	T	SNP	CPAMD8	ENST00000291440	human	ensembl	69_37n	-1	known	missense	c.2543	p.T848N	1.000	pfam_Macroglobln_a2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_errors	CPAMD8	HGNC	ENSG00000160111	54	0	0.00	37	13	25.49	-	-	-
DDX11L9	0	genome.wustl.edu	37	15	102516922	102516922	+	RNA	SNP	A	A	C			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	15	102516922	102516922	A	C	SNP	DDX11L9	ENST00000559159	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DDX11L9	HGNC	ENSG00000248472	10	0	0.00	8	4	33.33	-	-	-
DOCK7	0	genome.wustl.edu	37	1	63090858	63090858	+	RNA	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	63090858	63090858	C	T	SNP	DOCK7	ENST00000464312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641	43	0	0.00	27	4	12.90	-	-	-
EFR3B	0	genome.wustl.edu	37	2	25366673	25366673	+	Silent	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	2	25366673	25366673	G	A	SNP	EFR3B	ENST00000403714	human	ensembl	69_37n	+1	known	silent	c.1992	p.L664	0.999	NULL	superfamily_ARM-type_fold	-	no_errors	EFR3B	HGNC	ENSG00000084710	103	0	0.00	45	15	25.00	-	-	-
ENPP4	0	genome.wustl.edu	37	6	46108830	46108830	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	6	46108830	46108830	C	T	SNP	ENPP4	ENST00000321037	human	ensembl	69_37n	+1	known	missense	c.868	p.H290Y	0.996	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561	33	0	0.00	35	13	27.08	-	-	-
FAM47A	0	genome.wustl.edu	37	X	34149179	34149179	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	X	34149179	34149179	G	T	SNP	FAM47A	ENST00000346193	human	ensembl	69_37n	-1	known	missense	c.1217	p.T406N	0.048	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	107	0	0.00	117	46	28.22	-	-	-
FLAD1	0	genome.wustl.edu	37	1	154956253	154956253	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	154956253	154956253	G	C	SNP	FLAD1	ENST00000292180	human	ensembl	69_37n	+1	known	missense	c.83	p.R28T	0.001	pirsf_FAD_synth_Mopterin-bd	pfam_Mopterin-bd,pfam_PAPS_reduct,superfamily_Mopterin-bd,smart_Mopterin-bd,pirsf_FAD_synth_Mopterin-bd	-	no_errors	FLAD1	HGNC	ENSG00000160688	46	0	0.00	42	10	19.23	-	-	-
FLG	0	genome.wustl.edu	37	1	152283148	152283148	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	152283148	152283148	G	T	SNP	FLG	ENST00000368799	human	ensembl	69_37n	-1	known	nonsense	c.4214	p.S1405*	0.029	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	254	0	0.00	316	53	14.36	-	-	-
FOXA1	0	genome.wustl.edu	37	14	38061222	38061223	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	14	38061222	38061223	TT	-	DEL	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	frame_shift_del	c.767_766	p.N256fs	1.000:1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	67	0	0.00	61	11	15.07	-	-	-
FOXA1	0	genome.wustl.edu	37	14	38061225	38061228	+	Frame_Shift_Del	DEL	TCGA	TCGA	-			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	TCGA	TCGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	14	38061225	38061228	TCGA	-	DEL	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	frame_shift_del	c.764_761	p.F254fs	1.000:1.000:1.000:1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	72	0	0.00	65	11	14.10	-	-	-
GLUL	0	genome.wustl.edu	37	1	182353775	182353775	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	182353775	182353775	T	C	SNP	GLUL	ENST00000311223	human	ensembl	69_37n	-1	known	missense	c.887	p.N296S	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	74	0	0.00	69	10	12.66	-	-	-
GSDMB	0	genome.wustl.edu	37	17	38063216	38063216	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	17	38063216	38063216	A	G	SNP	GSDMB	ENST00000360317	human	ensembl	69_37n	-1	known	missense	c.725	p.L242S	0.094	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMB	HGNC	ENSG00000073605	23	0	0.00	24	7	22.58	-	-	-
KRTAP21-3	0	genome.wustl.edu	37	21	32090972	32090972	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	21	32090972	32090972	A	G	SNP	KRTAP21-3	ENST00000444335	human	ensembl	69_37n	-1	known	missense	c.106	p.Y36H	0.000	NULL	NULL	-	no_errors	KRTAP21-3	HGNC	ENSG00000231068	53	0	0.00	31	15	32.61	-	-	-
LINC00661	0	genome.wustl.edu	37	19	16136382	16136382	+	RNA	SNP	C	C	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	16136382	16136382	C	A	SNP	LINC00661	ENST00000379899	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	LINC00661	HGNC	ENSG00000205396	70	0	0.00	61	14	18.67	-	-	-
LRRC17	0	genome.wustl.edu	37	7	102574414	102574414	+	Silent	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	7	102574414	102574414	G	A	SNP	LRRC17	ENST00000339431	human	ensembl	69_37n	+1	known	silent	c.54	p.L18	0.969	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606	72	0	0.00	58	16	21.62	-	-	-
MARCO	0	genome.wustl.edu	37	2	119735465	119735465	+	Silent	SNP	A	A	G			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	2	119735465	119735465	A	G	SNP	MARCO	ENST00000327097	human	ensembl	69_37n	+1	known	silent	c.720	p.K240	0.990	NULL	pfam_Collagen,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	MARCO	HGNC	ENSG00000019169	39	0	0.00	18	8	30.77	-	-	-
NINJ1	0	genome.wustl.edu	37	9	95887400	95887400	+	RNA	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	9	95887400	95887400	G	A	SNP	NINJ1	ENST00000489274	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NINJ1	HGNC	ENSG00000131669	65	0	0.00	53	23	30.26	-	-	-
NT5C2	0	genome.wustl.edu	37	10	104850710	104850710	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	10	104850710	104850710	T	C	SNP	NT5C2	ENST00000343289	human	ensembl	69_37n	-1	known	missense	c.1255	p.I419V	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5C2	HGNC	ENSG00000076685	29	0	0.00	23	4	14.81	-	-	-
NYNRIN	0	genome.wustl.edu	37	14	24884073	24884073	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	14	24884073	24884073	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	+1	known	missense	c.3118	p.R1040W	1.000	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	57	0	0.00	39	18	31.58	-	-	-
PALB2	0	genome.wustl.edu	37	16	23647523	23647523	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	16	23647523	23647523	C	T	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	missense	c.344	p.G115E	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	103	0	0.00	91	19	17.27	-	-	-
PCDHB2	0	genome.wustl.edu	37	5	140474744	140474744	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	5	140474744	140474744	C	T	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	+1	known	missense	c.370	p.R124W	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	37	0	0.00	35	5	12.50	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	67	0	0.00	47	14	22.95	-	-	-
PRKX	0	genome.wustl.edu	37	X	3592644	3592644	+	Silent	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	X	3592644	3592644	G	A	SNP	PRKX	ENST00000262848	human	ensembl	69_37n	-1	known	silent	c.330	p.I110	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943	99	0	0.00	84	31	26.96	-	-	-
QSER1	0	genome.wustl.edu	37	11	32979425	32979425	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	11	32979425	32979425	G	T	SNP	QSER1	ENST00000399302	human	ensembl	69_37n	+1	known	missense	c.4375	p.A1459S	0.136	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	33	0	0.00	33	4	10.81	-	-	-
RPL36A	0	genome.wustl.edu	37	X	100646803	100646803	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	X	100646803	100646803	G	A	SNP	RPL36A	ENST00000427805	human	ensembl	69_37n	+1	known	missense	c.278	p.R93Q	1.000	pfam_Ribosomal_L44e,superfamily_Ribosomal_zn-bd_dom	pfam_Ribosomal_L44e,superfamily_Ribosomal_zn-bd_dom	-	no_errors	RPL36A	HGNC	ENSG00000241343	72	0	0.00	52	10	16.13	-	-	-
SLC25A41	0	genome.wustl.edu	37	19	6430137	6430137	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	6430137	6430137	C	A	SNP	SLC25A41	ENST00000458275	human	ensembl	69_37n	-1	known	missense	c.497	p.W166L	0.984	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	83	0	0.00	67	17	20.24	-	-	-
SPTBN2	0	genome.wustl.edu	37	11	66466533	66466533	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	11	66466533	66466533	G	T	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.3797	p.A1266E	0.975	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	45	0	0.00	28	17	37.78	-	-	-
SYMPK	0	genome.wustl.edu	37	19	46333417	46333417	+	Silent	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	46333417	46333417	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	silent	c.1644	p.D548	0.086	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	183	0	0.00	149	40	21.16	-	-	-
SYNC	0	genome.wustl.edu	37	1	33160553	33160553	+	Silent	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	1	33160553	33160553	G	A	SNP	SYNC	ENST00000409190	human	ensembl	69_37n	-1	known	silent	c.1146	p.A382	0.467	pfam_F	pfam_F	-	no_errors	SYNC	HGNC	ENSG00000162520	58	0	0.00	44	10	18.52	-	-	-
TAF1B	0	genome.wustl.edu	37	2	10008444	10008444	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	2	10008444	10008444	G	A	SNP	TAF1B	ENST00000263663	human	ensembl	69_37n	+1	known	missense	c.439	p.E147K	0.933	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	31	0	0.00	22	3	12.00	-	-	-
TBC1D22B	0	genome.wustl.edu	37	6	37252159	37252159	+	Silent	SNP	G	G	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	6	37252159	37252159	G	T	SNP	TBC1D22B	ENST00000373491	human	ensembl	69_37n	+1	known	silent	c.720	p.R240	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491	59	0	0.00	33	5	13.16	-	-	-
TBX3	0	genome.wustl.edu	37	12	115118792	115118793	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	12	115118792	115118793	-	CT	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.549_548	p.M184fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	52	0	0.00	39	11	22.00	-	-	-
TNKS	0	genome.wustl.edu	37	8	9627729	9627729	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	8	9627729	9627729	A	G	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	+1	known	missense	c.3854	p.N1285S	1.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	41	0	0.00	24	16	40.00	-	-	-
TRAPPC6B	0	genome.wustl.edu	37	14	39623467	39623467	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	14	39623467	39623467	C	T	SNP	TRAPPC6B	ENST00000330149	human	ensembl	69_37n	-1	novel	missense	c.299	p.R100H	0.936	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd	-	no_errors	TRAPPC6B	HGNC	ENSG00000182400	22	0	0.00	17	4	19.05	-	-	-
USP29	0	genome.wustl.edu	37	19	57640903	57640903	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	19	57640903	57640903	T	C	SNP	USP29	ENST00000254181	human	ensembl	69_37n	+1	known	missense	c.860	p.F287S	0.978	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	57	0	0.00	36	16	30.77	-	-	-
WISP2	0	genome.wustl.edu	37	20	43353470	43353470	+	Silent	SNP	C	C	T			TCGA-A2-A4S2-01A-12D-A25Q-09	TCGA-A2-A4S2-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1452df07-b990-46ec-8b2c-b6a17bd464c3	1196567b-472e-44b1-adfa-ca04fce2438f	20	43353470	43353470	C	T	SNP	WISP2	ENST00000190983	human	ensembl	69_37n	+1	known	silent	c.369	p.C123	0.002	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP2	HGNC	ENSG00000064205	177	0	0.00	137	49	26.34	-	-	-
