Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA2	0	genome.wustl.edu	37	9	139912699	139912699	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	9	139912699	139912699	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	69_37n	-1	known	missense	c.1924	p.A642T	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331	56	0	0.00	144	30	17.24	-	-	-
ALS2	0	genome.wustl.edu	37	2	202645634	202645634	+	RNA	SNP	C	C	G			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	2	202645634	202645634	C	G	SNP	ALS2	ENST00000462747	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.322	-	-	-	no_errors	ALS2	HGNC	ENSG00000003393	8	0	0.00	12	19	61.29	-	-	-
ANKRD20A4	0	genome.wustl.edu	37	9	69390020	69390020	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	9	69390020	69390020	T	A	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	+1	known	missense	c.574	p.S192T	0.002	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	11	0	0.00	17	10	37.04	-	-	-
ARHGAP29	0	genome.wustl.edu	37	1	94668512	94668512	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	94668512	94668512	C	A	SNP	ARHGAP29	ENST00000260526	human	ensembl	69_37n	-1	known	nonsense	c.916	p.E306*	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	52	0	0.00	57	20	25.97	-	-	-
BTAF1	0	genome.wustl.edu	37	10	93768598	93768598	+	Missense_Mutation	SNP	T	T	G			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	10	93768598	93768598	T	G	SNP	BTAF1	ENST00000265990	human	ensembl	69_37n	+1	known	missense	c.3826	p.W1276G	1.000	pfam_SNF2_N,superfamily_ARM-type_fold,smart_Helicase_ATP-bd	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564	39	0	0.00	33	24	42.11	-	-	-
COL4A2	0	genome.wustl.edu	37	13	111077189	111077189	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	13	111077189	111077189	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	+1	known	missense	c.289	p.G97R	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	31	0	0.00	61	14	18.67	-	-	-
CRELD2	0	genome.wustl.edu	37	22	50315537	50315537	+	RNA	SNP	A	A	G			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	22	50315537	50315537	A	G	SNP	CRELD2	ENST00000498354	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CRELD2	HGNC	ENSG00000184164	10	0	0.00	1	12	92.31	-	-	-
DEXI	0	genome.wustl.edu	37	16	11023406	11023406	+	RNA	SNP	G	G	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	16	11023406	11023406	G	T	SNP	DEXI	ENST00000469379	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.114	-	-	-	no_errors	DEXI	HGNC	ENSG00000182108	8	0	0.00	1	4	80.00	-	-	-
DGCR5	0	genome.wustl.edu	37	22	18978260	18978260	+	RNA	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	22	18978260	18978260	G	A	SNP	DGCR5	ENST00000438934	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.350	-	-	-	no_errors	DGCR5	HGNC	ENSG00000237517	56	0	0.00	124	21	14.48	-	-	-
DNAH2	0	genome.wustl.edu	37	17	7646583	7646583	+	Missense_Mutation	SNP	T	T	C			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	7646583	7646583	T	C	SNP	DNAH2	ENST00000082259	human	ensembl	69_37n	+1	known	missense	c.2273	p.L758P	0.000	NULL	pfam_Dynein_heavy_dom-1	-	no_errors	DNAH2	HGNC	ENSG00000183914	49	0	0.00	36	5	12.20	-	-	-
DPY19L3	0	genome.wustl.edu	37	19	32959574	32959574	+	RNA	SNP	T	T	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	19	32959574	32959574	T	A	SNP	DPY19L3	ENST00000592178	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	DPY19L3	HGNC	ENSG00000178904	25	0	0.00	16	9	36.00	-	-	-
ERCC6	0	genome.wustl.edu	37	10	50732557	50732557	+	Missense_Mutation	SNP	G	G	C			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	10	50732557	50732557	G	C	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.919	p.P307A	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	58	0	0.00	68	52	43.33	-	-	-
ERCC6	0	genome.wustl.edu	37	10	50732756	50732756	+	Silent	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	10	50732756	50732756	G	A	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	silent	c.720	p.I240	0.915	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	45	0	0.00	93	65	41.14	-	-	-
FAM123C	0	genome.wustl.edu	37	2	131519756	131519756	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	2	131519756	131519756	G	T	SNP	FAM123C	ENST00000321420	human	ensembl	69_37n	+1	known	missense	c.111	p.W37C	0.010	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123C	HGNC	ENSG00000178171	34	0	0.00	45	14	23.73	-	-	-
FRMPD4	0	genome.wustl.edu	37	X	12722603	12722603	+	Missense_Mutation	SNP	A	A	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	X	12722603	12722603	A	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	+1	known	missense	c.1196	p.K399M	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	39	0	0.00	61	10	14.08	-	-	-
GAS2	0	genome.wustl.edu	37	11	22777476	22777476	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	11	22777476	22777476	G	A	SNP	GAS2	ENST00000278187	human	ensembl	69_37n	+1	known	missense	c.700	p.G234R	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,smart_GAS2_dom	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2	HGNC	ENSG00000148935	41	0	0.00	83	28	25.00	-	-	-
HAS1	0	genome.wustl.edu	37	19	52217306	52217306	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	19	52217306	52217306	G	A	SNP	HAS1	ENST00000222115	human	ensembl	69_37n	-1	known	missense	c.1111	p.R371W	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509	37	0	0.00	53	20	27.40	-	-	-
HECW1	0	genome.wustl.edu	37	7	43482155	43482155	+	Silent	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	7	43482155	43482155	C	T	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	+1	known	silent	c.972	p.G324	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	33	0	0.00	83	20	19.42	-	-	-
HMCN1	0	genome.wustl.edu	37	1	186057750	186057750	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	186057750	186057750	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	missense	c.9590	p.S3197L	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	26	0	0.00	58	19	24.68	-	-	-
HMCN1	0	genome.wustl.edu	37	1	186092173	186092173	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	186092173	186092173	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	missense	c.12320	p.P4107L	0.001	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	39	0	0.00	73	27	27.00	-	-	-
HSD17B11	0	genome.wustl.edu	37	4	88258484	88258484	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	4	88258484	88258484	G	A	SNP	HSD17B11	ENST00000358290	human	ensembl	69_37n	-1	known	nonsense	c.847	p.Q283*	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B11	HGNC	ENSG00000198189	44	0	0.00	66	8	10.81	-	-	-
KIAA0100	0	genome.wustl.edu	37	17	26965606	26965606	+	Silent	SNP	G	G	C			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	26965606	26965606	G	C	SNP	KIAA0100	ENST00000005905	human	ensembl	69_37n	-1	known	silent	c.1284	p.V428	1.000	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	36	0	0.00	71	17	19.32	-	-	-
LBR	0	genome.wustl.edu	37	1	225599097	225599097	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	225599097	225599097	C	T	SNP	LBR	ENST00000272163	human	ensembl	69_37n	-1	known	missense	c.1130	p.R377Q	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815	22	0	0.00	53	20	27.40	-	-	-
LINC00523	0	genome.wustl.edu	37	14	101138230	101138230	+	RNA	SNP	A	A	C			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	14	101138230	101138230	A	C	SNP	LINC00523	ENST00000360899	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00523	HGNC	ENSG00000196273	25	0	0.00	43	5	10.42	-	-	-
LUZP1	0	genome.wustl.edu	37	1	23418607	23418607	+	Silent	SNP	T	T	C			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	23418607	23418607	T	C	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	silent	c.2148	p.E716	0.050	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	47	0	0.00	55	18	24.66	-	-	-
MRPL45	0	genome.wustl.edu	37	17	36478436	36478436	+	Nonsense_Mutation	SNP	T	T	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	36478436	36478436	T	A	SNP	MRPL45	ENST00000312513	human	ensembl	69_37n	+1	known	nonsense	c.879	p.Y293*	0.998	NULL	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	-	no_errors	MRPL45	HGNC	ENSG00000174100	25	0	0.00	570	137	19.35	-	-	-
MSX1	0	genome.wustl.edu	37	4	4864485	4864485	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	4	4864485	4864485	G	A	SNP	MSX1	ENST00000382723	human	ensembl	69_37n	+1	known	missense	c.527	p.R176Q	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	MSX1	HGNC	ENSG00000163132	24	0	0.00	63	12	16.00	-	-	-
MUC5AC	0	genome.wustl.edu	37	11	1156604	1156604	+	Silent	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	11	1156604	1156604	C	T	SNP	MUC5AC	ENST00000534821	human	ensembl	69_37n	+1	known	silent	c.621	p.T207	0.989	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out	-	no_stop_codon:bad_bp_length_for_coding_region	MUC5AC	HGNC	ENSG00000215182	27	0	0.00	42	6	12.50	-	-	-
OR4C15	0	genome.wustl.edu	37	11	55322053	55322054	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	11	55322053	55322054	-	T	INS	OR4C15	ENST00000314644	human	ensembl	69_37n	+1	known	frame_shift_ins	c.271_272	p.G92fs	0.000:0.008	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	98	0	0.00	148	22	12.94	-	-	-
POLRMT	0	genome.wustl.edu	37	19	629640	629640	+	Missense_Mutation	SNP	A	A	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	19	629640	629640	A	T	SNP	POLRMT	ENST00000588649	human	ensembl	69_37n	-1	known	missense	c.767	p.L256H	0.007	NULL	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821	36	0	0.00	40	16	28.57	-	-	-
RPRD2	0	genome.wustl.edu	37	1	150444409	150444409	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	150444409	150444409	A	G	SNP	RPRD2	ENST00000539519	human	ensembl	69_37n	+1	known	missense	c.2767	p.S923G	0.994	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD2	HGNC	ENSG00000163125	23	0	0.00	59	11	15.71	-	-	-
RUNX1T1	0	genome.wustl.edu	37	8	92998437	92998437	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	8	92998437	92998437	G	A	SNP	RUNX1T1	ENST00000521751	human	ensembl	69_37n	-1	known	missense	c.293	p.T98M	0.034	pfam_NHR2	pfam_NHR2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RUNX1T1	HGNC	ENSG00000079102	42	0	0.00	122	24	16.44	-	-	-
RYR3	0	genome.wustl.edu	37	15	34151848	34151848	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	15	34151848	34151848	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	+1	known	missense	c.14215	p.G4739S	1.000	pfam_Ion_trans_dom	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	106	0	0.00	147	32	17.88	-	-	-
SDHAP1	0	genome.wustl.edu	37	3	195686739	195686739	+	RNA	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	3	195686739	195686739	C	T	SNP	SDHAP1	ENST00000427149	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.653	-	-	-	no_errors	SDHAP1	HGNC	ENSG00000185485	20	0	0.00	14	4	22.22	-	-	-
SLC44A5	0	genome.wustl.edu	37	1	75685020	75685020	+	Silent	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	1	75685020	75685020	C	T	SNP	SLC44A5	ENST00000370855	human	ensembl	69_37n	-1	known	silent	c.1188	p.A396	0.993	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968	37	0	0.00	76	11	12.64	-	-	-
SOCS6	0	genome.wustl.edu	37	18	67993118	67993118	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	18	67993118	67993118	C	T	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	+1	known	missense	c.1214	p.S405F	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	20	0	0.00	49	8	14.04	-	-	-
SOCS6	0	genome.wustl.edu	37	18	67993262	67993262	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	18	67993262	67993262	C	T	SNP	SOCS6	ENST00000397942	human	ensembl	69_37n	+1	known	missense	c.1358	p.S453F	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677	27	0	0.00	67	8	10.67	-	-	-
TBC1D3P2	0	genome.wustl.edu	37	17	60342145	60342145	+	RNA	SNP	T	T	C			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	60342145	60342145	T	C	SNP	TBC1D3P2	ENST00000581291	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.054	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755	15	0	0.00	6	8	57.14	-	-	-
TCF25	0	genome.wustl.edu	37	16	89952461	89952461	+	Missense_Mutation	SNP	T	T	C			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	16	89952461	89952461	T	C	SNP	TCF25	ENST00000565404	human	ensembl	69_37n	+1	putative	missense	c.400	p.W134R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TCF25	HGNC	ENSG00000141002	36	0	0.00	41	12	22.22	-	-	-
THBS1	0	genome.wustl.edu	37	15	39874437	39874437	+	Silent	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	15	39874437	39874437	C	T	SNP	THBS1	ENST00000260356	human	ensembl	69_37n	+1	known	silent	c.111	p.T37	0.057	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801	23	0	0.00	35	6	14.63	-	-	-
TMCC1	0	genome.wustl.edu	37	3	129389467	129389467	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	3	129389467	129389467	C	T	SNP	TMCC1	ENST00000393238	human	ensembl	69_37n	-1	known	missense	c.1217	p.G406E	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	35	0	0.00	61	14	18.67	-	-	-
TMEM14B	0	genome.wustl.edu	37	6	10750060	10750060	+	RNA	SNP	G	G	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	6	10750060	10750060	G	A	SNP	TMEM14B	ENST00000492297	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210	38	0	0.00	30	22	42.31	-	-	-
TNK2	0	genome.wustl.edu	37	3	195603552	195603552	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	3	195603552	195603552	G	T	SNP	TNK2	ENST00000411741	human	ensembl	69_37n	-1	novel	missense	c.56	p.P19H	0.002	NULL	pfam_GTPase_binding,superfamily_SH3_domain	-	no_start_codon:no_stop_codon	TNK2	HGNC	ENSG00000061938	18	0	0.00	20	17	45.95	-	-	-
TP53	0	genome.wustl.edu	37	17	7579409	7579410	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	17	7579409	7579410	AG	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.278_277	p.L93fs	1.000:1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	43	0	0.00	7	10	55.56	-	-	-
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007	117	0	0.00	122	95	43.58	-	-	-
WAS	0	genome.wustl.edu	37	X	48547822	48547822	+	Silent	SNP	C	C	T			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	X	48547822	48547822	C	T	SNP	WAS	ENST00000376701	human	ensembl	69_37n	+1	known	silent	c.1452	p.S484	0.951	superfamily_WASP_C	pfam_EVH1,pfam_PAK_box_Rho-bd,pfam_WH2_dom,superfamily_WASP_C,smart_EVH1,smart_PAK_box_Rho-bd,smart_WH2_dom,pfscan_PAK_box_Rho-bd,pfscan_EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285	52	0	0.00	55	27	32.93	-	-	-
ZFP91	0	genome.wustl.edu	37	11	58384773	58384773	+	Missense_Mutation	SNP	G	G	C			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	11	58384773	58384773	G	C	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	+1	known	missense	c.1307	p.G436A	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	27	0	0.00	33	5	13.16	-	-	-
ZNF208	0	genome.wustl.edu	37	19	22155166	22155166	+	Missense_Mutation	SNP	T	T	G			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	19	22155166	22155166	T	G	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.2670	p.K890N	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	32	0	0.00	59	16	21.33	-	-	-
ZNF703	0	genome.wustl.edu	37	8	37556061	37556061	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A2KD-01A-31D-A21Q-09	TCGA-A7-A2KD-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f8d373ee-1874-4d50-93ce-baea3d91bcf3	534d0ac4-dc2f-427f-911f-1b7b2a003306	8	37556061	37556061	T	A	SNP	ZNF703	ENST00000331569	human	ensembl	69_37n	+1	known	missense	c.1642	p.Y548N	1.000	NULL	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF703	HGNC	ENSG00000183779	29	0	0.00	42	15	26.32	-	-	-
